CotAD_03549, CotAD_03549_BGI-AD1_v1.0 (mRNA) Gossypium hirsutum

Transcript Overview
NameCotAD_03549
Unique NameCotAD_03549_BGI-AD1_v1.0
TypemRNA
OrganismGossypium hirsutum (Upland Cotton)
Sequence length237
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
At_chr9chromosomeAt_chr9:41966283..41966643 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
bhhbL0001Gossypium barbadense (AD2) '3-79' genome HAU_v1Gossypium barbadense
bhhbL0003Gossypium barbadense (AD2) '3-79' genome HAU_v1Gossypium barbadense
bhhbL2618Gossypium barbadense (AD2) '3-79' genome HAU_v1Gossypium barbadense
hbhbR0657Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
hbhbR0700Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
hbhbR0704Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
hbhbR0755Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
hbhnR0807Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
hbhnR0838Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
hbhnR0858Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
hbhnR0988Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
hbhnR1046Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
hbhzR0669Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
hbhzR0701Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
hbhzR0722Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
hbhzR0896Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
hbhzR1027Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
hbhgsR0555Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
hbhgsR0583Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
hbhgsR0604Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
hbhgsR0753Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
hbtoR0556Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
hbtoR0583Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
hbtoR0606Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
hbtoR0747Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
gdhbL0015Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
gdhbL1152Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
gdhbL1721Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
gdhbL1740Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
gdhbL3040Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
gdhbL3050Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
gdhbL4347Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
gdhbL4350Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
gdhbL5514Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
hbtwR0691Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
hbtwR0731Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
hbtwR0750Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
hbtwR0765Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
hbtwR0868Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
hbtwR0913Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
hbuhR0552Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
hbuhR0574Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
hbuhR0594Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
hbuhR0738Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
hbndmR0691Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
hbndmR0725Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
hbndmR0747Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
hbndmR0763Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
hbndmR0881Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
hbndmR0927Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
hbjmbR0674Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
hbjmbR0679Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
hbjmbR0711Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
hbjmbR0733Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
hbjmbR0807Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
hbjmbR0907Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
hbjmbR1038Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
hbpscR0662Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
hbpscR0693Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
hbpscR0714Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
hbpscR0844Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
hbpscR0847Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
hbpscR0884Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
hbpscR1014Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
hbhpfR0625Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum
hbhpfR0654Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum
hbhpfR0674Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum
hbhpfR0838Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum

Orthologs
Gene/TranscriptAssemblySpecies
rna-gnl|WGS:VKDL|Gobar.A01G240600.1Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
rna-gnl|WGS_VKGI|Godar.A01G258900.1Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CotAD_03549_BGI-AD1_v1.0-CDS-At_chr9_BGI-AD1_v1.0-1448072452:41966283..41966384CotAD_03549_BGI-AD1_v1.0-CDS-At_chr9_BGI-AD1_v1.0-1448072452:41966283..41966384Gossypium hirsutumCDS
CotAD_03549_BGI-AD1_v1.0-CDS-At_chr9_BGI-AD1_v1.0-1448072452:41966509..41966643CotAD_03549_BGI-AD1_v1.0-CDS-At_chr9_BGI-AD1_v1.0-1448072452:41966509..41966643Gossypium hirsutumCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CotAD_03549CotAD_03549_BGI-AD1_v1.0-proteinGossypium hirsutumpolypeptide
CotAD_03549_BGI-AD1_v1.0CotAD_03549_BGI-AD1_v1.0Gossypium hirsutumpolypeptide


Homology
[Close]
BLAST of CotAD_03549 vs. ExPASy Swiss-Prot
Match: RR31_ARATH (30S ribosomal protein S31, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS31 PE=1 SV=1)

HSP 1 Score: 51.6026 bits (122), Expect = 6.551e-9
Identity = 35/45 (77.78%), Postives = 42/45 (93.33%), Query Frame = 0 
Query:   34 EARPRDKKKGRGPPRVPVPPSPPRKDKFDDDEKIKIEIDESLFTS 78
             ARPR+K KGRGP RVPVPP+PPRKDKF++DEKIKI+IDESLF++
Sbjct:   74 NARPRNKSKGRGPERVPVPPAPPRKDKFENDEKIKIDIDESLFSN 118
[Close]
BLAST of CotAD_03549 vs. Araport11
Match: gnl|BL_ORD_ID|18244 (AT2G38140.1 | plastid-specific ribosomal protein 4 | Chr2:15980948-15981459 FORWARD LENGTH=118 | 201606)

HSP 1 Score: 51.6026 bits (122), Expect = 6.806e-10
Identity = 35/45 (77.78%), Postives = 42/45 (93.33%), Query Frame = 0 
Query:   34 EARPRDKKKGRGPPRVPVPPSPPRKDKFDDDEKIKIEIDESLFTS 78
             ARPR+K KGRGP RVPVPP+PPRKDKF++DEKIKI+IDESLF++
Sbjct:   74 NARPRNKSKGRGPERVPVPPAPPRKDKFENDEKIKIDIDESLFSN 118
[Close]
BLAST of CotAD_03549 vs. NCBI nr
Match: gi|1347683742|gb|PPR86558.1| (hypothetical protein GOBAR_AA34137 [Gossypium barbadense])

HSP 1 Score: 113.62 bits (283), Expect = 2.435e-31
Identity = 74/78 (94.87%), Postives = 76/78 (97.44%), Query Frame = 0 
Query:    1 MLFGFKIKAREKPGKSVIHTLKIPYPPISSNRQEARPRDKKKGRGPPRVPVPPSPPRKDKFDDDEKIKIEIDESLFTS 78
            MLFGFKIKAREKPGKS IHTLK PYPPISSNRQEARPR+KKKGRGPPRVPVPPSPPRKDKFDDDEKIKIEIDESLFT+
Sbjct:    1 MLFGFKIKAREKPGKSAIHTLKTPYPPISSNRQEARPREKKKGRGPPRVPVPPSPPRKDKFDDDEKIKIEIDESLFTT 78
[Close]
BLAST of CotAD_03549 vs. NCBI nr
Match: gi|1201318550|gb|OVA17635.1| (hypothetical protein BVC80_1835g1 [Macleaya cordata])

HSP 1 Score: 78.9518 bits (193), Expect = 3.775e-17
Identity = 36/45 (80.00%), Postives = 42/45 (93.33%), Query Frame = 0 
Query:   34 EARPRDKKKGRGPPRVPVPPSPPRKDKFDDDEKIKIEIDESLFTS 78
             ARPR+KKKGRGPPRVP+ PSPP+KDKFDD+E +KI+IDESLFTS
Sbjct:   78 NARPRNKKKGRGPPRVPIAPSPPKKDKFDDNEIVKIDIDESLFTS 122
[Close]
BLAST of CotAD_03549 vs. NCBI nr
Match: gi|1201300066|gb|OVA02663.1| (hypothetical protein BVC80_9093g2 [Macleaya cordata])

HSP 1 Score: 77.0258 bits (188), Expect = 1.005e-16
Identity = 35/45 (77.78%), Postives = 42/45 (93.33%), Query Frame = 0 
Query:   34 EARPRDKKKGRGPPRVPVPPSPPRKDKFDDDEKIKIEIDESLFTS 78
             ARPR+KKKGRGPPRVP+ PSPP+KDKFDD+E +KI+IDESLF+S
Sbjct:   54 NARPRNKKKGRGPPRVPIAPSPPKKDKFDDNEIVKIDIDESLFSS 98
[Close]
BLAST of CotAD_03549 vs. NCBI nr
Match: gi|1147596624|ref|XP_020102219.1| (30S ribosomal protein S31, chloroplastic [Ananas comosus])

HSP 1 Score: 75.485 bits (184), Expect = 1.223e-15
Identity = 35/44 (79.55%), Postives = 39/44 (88.64%), Query Frame = 0 
Query:   34 EARPRDKKKGRGPPRVPVPPSPPRKDKFDDDEKIKIEIDESLFT 77
             ARPRDKKKGRGPPR P+PPS PRKD+FDD E +KIEIDESLF+
Sbjct:   88 NARPRDKKKGRGPPRAPMPPSAPRKDRFDDGEIVKIEIDESLFS 131
[Close]
BLAST of CotAD_03549 vs. NCBI nr
Match: gi|1338470670|gb|PON92641.1| (30S ribosomal protein [Trema orientalis])

HSP 1 Score: 74.3294 bits (181), Expect = 2.171e-15
Identity = 34/44 (77.27%), Postives = 41/44 (93.18%), Query Frame = 0 
Query:   34 EARPRDKKKGRGPPRVPVPPSPPRKDKFDDDEKIKIEIDESLFT 77
             ARPR+K KGRGPPR+PVP +PP+KDKFD+DEKIKI+IDESLF+
Sbjct:   72 NARPRNKNKGRGPPRLPVPQAPPKKDKFDNDEKIKIDIDESLFS 115
[Close]
BLAST of CotAD_03549 vs. NCBI nr
Match: gi|567873473|ref|XP_006429326.1| (30S ribosomal protein S31, chloroplastic [Citrus clementina] >gi|557531383|gb|ESR42566.1| hypothetical protein CICLE_v10013049mg [Citrus clementina])

HSP 1 Score: 75.0998 bits (183), Expect = 2.387e-15
Identity = 34/45 (75.56%), Postives = 40/45 (88.89%), Query Frame = 0 
Query:   34 EARPRDKKKGRGPPRVPVPPSPPRKDKFDDDEKIKIEIDESLFTS 78
             ARPRDKKKGRGPPRV  PP+PPRKD+FDD EKI I++DESLF++
Sbjct:  100 NARPRDKKKGRGPPRVTAPPAPPRKDRFDDGEKIHIDLDESLFSN 144
[Close]
BLAST of CotAD_03549 vs. NCBI nr
Match: gi|568854761|ref|XP_006480988.1| (PREDICTED: 30S ribosomal protein S31, chloroplastic [Citrus sinensis])

HSP 1 Score: 74.7146 bits (182), Expect = 3.062e-15
Identity = 34/45 (75.56%), Postives = 40/45 (88.89%), Query Frame = 0 
Query:   34 EARPRDKKKGRGPPRVPVPPSPPRKDKFDDDEKIKIEIDESLFTS 78
             ARPRDKKKGRGPPRV  PP+PPRKD+FDD EKI I++DESLF++
Sbjct:  100 NARPRDKKKGRGPPRVTAPPAPPRKDRFDDGEKIHIDLDESLFSN 144
[Close]
BLAST of CotAD_03549 vs. NCBI nr
Match: gi|1227896613|ref|XP_021895733.1| (30S ribosomal protein S31, chloroplastic [Carica papaya])

HSP 1 Score: 73.559 bits (179), Expect = 4.155e-15
Identity = 34/43 (79.07%), Postives = 39/43 (90.70%), Query Frame = 0 
Query:   34 EARPRDKKKGRGPPRVPVPPSPPRKDKFDDDEKIKIEIDESLF 76
             ARPRDKKKGRGPPR+PVP SPP+ D+F+DDEK+KIEIDESL 
Sbjct:   76 NARPRDKKKGRGPPRIPVPSSPPKLDRFEDDEKVKIEIDESLL 118
[Close]
BLAST of CotAD_03549 vs. NCBI nr
Match: gi|1338420097|gb|PON43538.1| (30S ribosomal protein [Parasponia andersonii])

HSP 1 Score: 73.559 bits (179), Expect = 4.173e-15
Identity = 34/44 (77.27%), Postives = 40/44 (90.91%), Query Frame = 0 
Query:   34 EARPRDKKKGRGPPRVPVPPSPPRKDKFDDDEKIKIEIDESLFT 77
             ARPR+K KGRGPPRVPVP +PP+KDKFD+DEKIKI+IDESL +
Sbjct:   72 NARPRNKNKGRGPPRVPVPQAPPKKDKFDNDEKIKIDIDESLLS 115
[Close]
BLAST of CotAD_03549 vs. NCBI nr
Match: gi|1315957205|dbj|GAY50668.1| (hypothetical protein CUMW_128490 [Citrus unshiu])

HSP 1 Score: 73.559 bits (179), Expect = 4.507e-15
Identity = 34/45 (75.56%), Postives = 40/45 (88.89%), Query Frame = 0 
Query:   34 EARPRDKKKGRGPPRVPVPPSPPRKDKFDDDEKIKIEIDESLFTS 78
             ARPRDKKKGRGPPRV  PP+PPRKD+FDD EKI I++DESLF++
Sbjct:   69 NARPRDKKKGRGPPRVTAPPAPPRKDRFDDGEKIHIDLDESLFSN 113
[Close]
BLAST of CotAD_03549 vs. ExPASy TrEMBL
Match: A0A2P5W665_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA34137 PE=4 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 2.046e-31
Identity = 74/78 (94.87%), Postives = 76/78 (97.44%), Query Frame = 0 
Query:    1 MLFGFKIKAREKPGKSVIHTLKIPYPPISSNRQEARPRDKKKGRGPPRVPVPPSPPRKDKFDDDEKIKIEIDESLFTS 78
            MLFGFKIKAREKPGKS IHTLK PYPPISSNRQEARPR+KKKGRGPPRVPVPPSPPRKDKFDDDEKIKIEIDESLFT+
Sbjct:    1 MLFGFKIKAREKPGKSAIHTLKTPYPPISSNRQEARPREKKKGRGPPRVPVPPSPPRKDKFDDDEKIKIEIDESLFTT 78
[Close]
BLAST of CotAD_03549 vs. ExPASy TrEMBL
Match: A0A200R4M0_9MAGN (Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_1835g1 PE=4 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.171e-17
Identity = 36/45 (80.00%), Postives = 42/45 (93.33%), Query Frame = 0 
Query:   34 EARPRDKKKGRGPPRVPVPPSPPRKDKFDDDEKIKIEIDESLFTS 78
             ARPR+KKKGRGPPRVP+ PSPP+KDKFDD+E +KI+IDESLFTS
Sbjct:   78 NARPRNKKKGRGPPRVPIAPSPPKKDKFDDNEIVKIDIDESLFTS 122
[Close]
BLAST of CotAD_03549 vs. ExPASy TrEMBL
Match: A0A200PWR1_9MAGN (Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_9093g2 PE=4 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.443e-17
Identity = 35/45 (77.78%), Postives = 42/45 (93.33%), Query Frame = 0 
Query:   34 EARPRDKKKGRGPPRVPVPPSPPRKDKFDDDEKIKIEIDESLFTS 78
             ARPR+KKKGRGPPRVP+ PSPP+KDKFDD+E +KI+IDESLF+S
Sbjct:   54 NARPRNKKKGRGPPRVPIAPSPPKKDKFDDNEIVKIDIDESLFSS 98
[Close]
BLAST of CotAD_03549 vs. ExPASy TrEMBL
Match: A0A1D1ZK81_9ARAE (30S ribosomal protein S31, chloroplastic OS=Anthurium amnicola OX=1678845 GN=RPS31 PE=4 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.392e-15
Identity = 35/44 (79.55%), Postives = 39/44 (88.64%), Query Frame = 0 
Query:   34 EARPRDKKKGRGPPRVPVPPSPPRKDKFDDDEKIKIEIDESLFT 77
             ARPRDKKKGRGPPR  VPPSPP+KD+FDD E +KIEIDESLF+
Sbjct:   97 NARPRDKKKGRGPPRALVPPSPPKKDRFDDGEIVKIEIDESLFS 140
[Close]
BLAST of CotAD_03549 vs. ExPASy TrEMBL
Match: A0A2P5F4B8_TREOI (30S ribosomal protein OS=Trema orientale OX=63057 GN=TorRG33x02_115010 PE=4 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.824e-15
Identity = 34/44 (77.27%), Postives = 41/44 (93.18%), Query Frame = 0 
Query:   34 EARPRDKKKGRGPPRVPVPPSPPRKDKFDDDEKIKIEIDESLFT 77
             ARPR+K KGRGPPR+PVP +PP+KDKFD+DEKIKI+IDESLF+
Sbjct:   72 NARPRNKNKGRGPPRLPVPQAPPKKDKFDNDEKIKIDIDESLFS 115
[Close]
BLAST of CotAD_03549 vs. ExPASy TrEMBL
Match: V4SZ82_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10013049mg PE=4 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.005e-15
Identity = 34/45 (75.56%), Postives = 40/45 (88.89%), Query Frame = 0 
Query:   34 EARPRDKKKGRGPPRVPVPPSPPRKDKFDDDEKIKIEIDESLFTS 78
             ARPRDKKKGRGPPRV  PP+PPRKD+FDD EKI I++DESLF++
Sbjct:  100 NARPRDKKKGRGPPRVTAPPAPPRKDRFDDGEKIHIDLDESLFSN 144
[Close]
BLAST of CotAD_03549 vs. ExPASy TrEMBL
Match: A0A2P5B416_PARAD (30S ribosomal protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_273110 PE=4 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.506e-15
Identity = 34/44 (77.27%), Postives = 40/44 (90.91%), Query Frame = 0 
Query:   34 EARPRDKKKGRGPPRVPVPPSPPRKDKFDDDEKIKIEIDESLFT 77
             ARPR+K KGRGPPRVPVP +PP+KDKFD+DEKIKI+IDESL +
Sbjct:   72 NARPRNKNKGRGPPRVPVPQAPPKKDKFDNDEKIKIDIDESLLS 115
[Close]
BLAST of CotAD_03549 vs. ExPASy TrEMBL
Match: A0A2H5PEA1_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_128490 PE=4 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.786e-15
Identity = 34/45 (75.56%), Postives = 40/45 (88.89%), Query Frame = 0 
Query:   34 EARPRDKKKGRGPPRVPVPPSPPRKDKFDDDEKIKIEIDESLFTS 78
             ARPRDKKKGRGPPRV  PP+PPRKD+FDD EKI I++DESLF++
Sbjct:   69 NARPRDKKKGRGPPRVTAPPAPPRKDRFDDGEKIHIDLDESLFSN 113
[Close]
BLAST of CotAD_03549 vs. ExPASy TrEMBL
Match: A0A2N9EZM1_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS12058 PE=4 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 5.922e-15
Identity = 35/44 (79.55%), Postives = 39/44 (88.64%), Query Frame = 0 
Query:   34 EARPRDKKKGRGPPRVPVPPSPPRKDKFDDDEKIKIEIDESLFT 77
             ARPR+K KGRGPP+VPV PSPPRKDKF+DDE IKIEIDESL +
Sbjct:   76 NARPRNKNKGRGPPKVPVTPSPPRKDKFEDDEVIKIEIDESLLS 119
[Close]
BLAST of CotAD_03549 vs. ExPASy TrEMBL
Match: A0A2Z7C661_9LAMI (Uncharacterized protein OS=Dorcoceras hygrometricum OX=472368 GN=F511_23843 PE=4 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 6.638e-14
Identity = 33/45 (73.33%), Postives = 37/45 (82.22%), Query Frame = 0 
Query:   34 EARPRDKKKGRGPPRVPVPPSPPRKDKFDDDEKIKIEIDESLFTS 78
             ARP+DK KGRGPPRV  PP PPRKDK+DD + IKIEIDESLF +
Sbjct:   69 NARPKDKSKGRGPPRVAAPPLPPRKDKYDDGDVIKIEIDESLFAN 113
The following BLAST results are available for this feature:
BLAST of CotAD_03549 vs. ExPASy Swiss-Prot
Analysis Date: 2019-06-10 (BLASTp of BGI-CGP AD1 genome protein v1.0 vs Uniprot Swiss-Prot)
Total hits: 1
Match NameE-valueIdentityDescription
RR31_ARATH6.551e-977.7830S ribosomal protein S31, chloroplastic OS=Arabid... [more]
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BLAST of CotAD_03549 vs. Araport11
Analysis Date: 2019-06-10 (BLASTp of BGI-CGP AD1 genome protein v1.0 vs Araport11)
Total hits: 1
Match NameE-valueIdentityDescription
gnl|BL_ORD_ID|182446.806e-1077.78AT2G38140.1 | plastid-specific ribosomal protein 4... [more]
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BLAST of CotAD_03549 vs. NCBI nr
Analysis Date: 2019-06-10 (BLASTp of BGI-CGP AD1 genome protein v1.0 vs NCBI nr)
Total hits: 10
Match NameE-valueIdentityDescription
gi|1347683742|gb|PPR86558.1|2.435e-3194.87hypothetical protein GOBAR_AA34137 [Gossypium barb... [more]
gi|1201318550|gb|OVA17635.1|3.775e-1780.00hypothetical protein BVC80_1835g1 [Macleaya cordat... [more]
gi|1201300066|gb|OVA02663.1|1.005e-1677.78hypothetical protein BVC80_9093g2 [Macleaya cordat... [more]
gi|1147596624|ref|XP_020102219.1|1.223e-1579.5530S ribosomal protein S31, chloroplastic [Ananas c... [more]
gi|1338470670|gb|PON92641.1|2.171e-1577.2730S ribosomal protein [Trema orientalis][more]
gi|567873473|ref|XP_006429326.1|2.387e-1575.5630S ribosomal protein S31, chloroplastic [Citrus c... [more]
gi|568854761|ref|XP_006480988.1|3.062e-1575.56PREDICTED: 30S ribosomal protein S31, chloroplasti... [more]
gi|1227896613|ref|XP_021895733.1|4.155e-1579.0730S ribosomal protein S31, chloroplastic [Carica p... [more]
gi|1338420097|gb|PON43538.1|4.173e-1577.2730S ribosomal protein [Parasponia andersonii][more]
gi|1315957205|dbj|GAY50668.1|4.507e-1575.56hypothetical protein CUMW_128490 [Citrus unshiu][more]
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BLAST of CotAD_03549 vs. ExPASy TrEMBL
Analysis Date: 2019-06-10 (BLASTp of BGI-CGP AD1 genome protein v1.0 vs Uniprot TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
A0A2P5W665_GOSBA2.046e-3194.87Uncharacterized protein OS=Gossypium barbadense OX... [more]
A0A200R4M0_9MAGN3.171e-1780.00Uncharacterized protein OS=Macleaya cordata OX=568... [more]
A0A200PWR1_9MAGN8.443e-1777.78Uncharacterized protein OS=Macleaya cordata OX=568... [more]
A0A1D1ZK81_9ARAE1.392e-1579.5530S ribosomal protein S31, chloroplastic OS=Anthur... [more]
A0A2P5F4B8_TREOI1.824e-1577.2730S ribosomal protein OS=Trema orientale OX=63057 ... [more]
V4SZ82_9ROSI2.005e-1575.56Uncharacterized protein OS=Citrus clementina OX=85... [more]
A0A2P5B416_PARAD3.506e-1577.2730S ribosomal protein OS=Parasponia andersonii OX=... [more]
A0A2H5PEA1_CITUN3.786e-1575.56Uncharacterized protein OS=Citrus unshiu OX=55188 ... [more]
A0A2N9EZM1_FAGSY5.922e-1579.55Uncharacterized protein OS=Fagus sylvatica OX=2893... [more]
A0A2Z7C661_9LAMI6.638e-1473.33Uncharacterized protein OS=Dorcoceras hygrometricu... [more]
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Sequences
The following sequences are available for this feature:

mRNA sequence

>CotAD_03549_BGI-AD1_v1.0 ID=CotAD_03549_BGI-AD1_v1.0; Name=CotAD_03549; organism=Gossypium hirsutum; type=mRNA; length=237bp
ATGCTTTTTGGTTTCAAGATAAAGGCGAGGGAAAAGCCTGGAAAGAGCGT
GATCCATACGCTCAAAATACCATATCCTCCCATCTCTTCTAATAGACAAG
AGGCAAGGCCTAGGGACAAGAAGAAGGGGAGAGGGCCACCAAGGGTGCCA
GTTCCACCATCACCACCGAGAAAAGATAAGTTTGATGATGATGAGAAGAT
AAAAATTGAAATTGATGAATCCCTTTTTACTAGTTAA
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protein sequence of CotAD_03549_BGI-AD1_v1.0

>CotAD_03549_BGI-AD1_v1.0 ID=CotAD_03549_BGI-AD1_v1.0; Name=CotAD_03549_BGI-AD1_v1.0; organism=Gossypium hirsutum; type=polypeptide; length=78bp
MLFGFKIKAREKPGKSVIHTLKIPYPPISSNRQEARPRDKKKGRGPPRVP
VPPSPPRKDKFDDDEKIKIEIDESLFTS
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mRNA from alignment at At_chr9:41966283..41966643+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CotAD_03549_BGI-AD1_v1.0 ID=CotAD_03549_BGI-AD1_v1.0; Name=CotAD_03549; organism=Gossypium hirsutum; type=mRNA; length=361bp; location=Sequence derived from: At_chr9:41966283..41966643+ (Gossypium hirsutum
ATGCTTTTTGGTTTCAAGATAAAGGCGAGGGAAAAGCCTGGAAAGAGCGT
GATCCATACGCTCAAAATACCATATCCTCCCATCTCTTCTAATAGACAAG
AGGTACAATGATAATTCTAAATCCAAAGATAAACCGAAGTGCTATTGTTA
TTATTAGTTCCCATTGTTGGTTAAACTTGATAGATTTTGATTTTGTTTTA
TATATATGCATAATGAAATTGAATAGGCAAGGCCTAGGGACAAGAAGAAG
GGGAGAGGGCCACCAAGGGTGCCAGTTCCACCATCACCACCGAGAAAAGA
TAAGTTTGATGATGATGAGAAGATAAAAATTGAAATTGATGAATCCCTTT
TTACTAGTTAA
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Coding sequence (CDS) from alignment at At_chr9:41966283..41966643+

>CotAD_03549_BGI-AD1_v1.0 ID=CotAD_03549_BGI-AD1_v1.0; Name=CotAD_03549; organism=Gossypium hirsutum; type=CDS; length=237bp; location=Sequence derived from: At_chr9:41966283..41966643+ (Gossypium hirsutum
ATGCTTTTTGGTTTCAAGATAAAGGCGAGGGAAAAGCCTGGAAAGAGCGT
GATCCATACGCTCAAAATACCATATCCTCCCATCTCTTCTAATAGACAAG
AGGCAAGGCCTAGGGACAAGAAGAAGGGGAGAGGGCCACCAAGGGTGCCA
GTTCCACCATCACCACCGAGAAAAGATAAGTTTGATGATGATGAGAAGAT
AAAAATTGAAATTGATGAATCCCTTTTTACTAGTTAA
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