Cotton_D_gene_10034574, Cotton_D_gene_10034574 (mRNA) Gossypium raimondii

Transcript Overview
NameCotton_D_gene_10034574
Unique NameCotton_D_gene_10034574-BGI-CGP_v1.0
TypemRNA
OrganismGossypium raimondii (Gossypium raimondii)
Sequence length1394
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr8chromosomeChr8:25665642..25667035 +Gossypium raimondii (D5) 'D5-3' genome BGI-CGP-draft_v1n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
hbrbL1195Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
hbrbL2833Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
hbrbL3530Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
abrbL0284Gossypium arboreum (A2) 'SXY1' genome CGP-BGI_v2_a1Gossypium arboreum
abrbL0735Gossypium arboreum (A2) 'SXY1' genome CGP-BGI_v2_a1Gossypium arboreum
rbrbL125Gossypium raimondii (D5) 'D5-3' genome BGI-CGP-draft_v1Gossypium raimondii
hnrbL0859Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
hnrbL1595Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
hnrbL2439Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
hnrbL3063Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
gbrbL1256Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
gbrbL2235Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
gbrbL3168Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
gbrbL4042Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
ghrbL1232Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
ghrbL2167Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
ghrbL3067Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
ghrbL3918Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
hzrbL1322Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
hzrbL2319Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
hzrbL3281Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
hzrbL4171Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
bzrbL1311Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
bzrbL2303Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
bzrbL3275Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
bzrbL4169Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
grbrbL1102Gossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
grbrbL1956Gossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
gaurbL0988Gossypium australe (G2) genome CRI_v1.1Gossypium australe
gaurbL1548Gossypium australe (G2) genome CRI_v1.1Gossypium australe
dtrbL0161Gossypium thurberi (D1-35) genome ISU_v1Gossypium thurberi
dtrbL1554Gossypium thurberi (D1-35) genome ISU_v1Gossypium thurberi
awrbL1173Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
awrbL2056Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
rbtwR0786Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
rbtwR0828Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
rbtwR0909Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
rbtwR0962Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
dqirbL0045Gossypium lobatum (D7) genome ISU_v1Gossypium lobatum
dqirbL0556Gossypium lobatum (D7) genome ISU_v1Gossypium lobatum
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Cotton_D_gene_10034574_CDS_1Cotton_D_gene_10034574_CDS_1-BGI-CGP_v1.0Gossypium raimondiiCDS
Cotton_D_gene_10034574_CDS_2Cotton_D_gene_10034574_CDS_2-BGI-CGP_v1.0Gossypium raimondiiCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Cotton_D_gene_10034574Cotton_D_gene_10034574-BGI-CGP_v1.0Gossypium raimondiipolypeptide


Homology
[Close]
BLAST of Cotton_D_gene_10034574 vs. Malus x Domestica v1.0
Match: MDP0000580739 (MDP0000580739)

HSP 1 Score: 55.4546 bits (132), Expect = 3.645e-8
Identity = 35/127 (27.56%), Postives = 67/127 (52.76%), Query Frame = 1 
Query:   45 KPVVSR-------IALLDSRYKKYQDACIGTVEATLSSGMAMVTLFPNFTMSLQDLNLLDALKVQIQIIGAEMVESAVTTTLHYQIVYRV--QDHAFKLSNQGFEDSLLISVNTREESHCVHVPKQI 162
            KP+  R       + L D+R+  + D+ +G VE++L +G      FP+ T+SL D ++  AL + I+  G +++E      L Y+I Y+V   +  F+   +  +D  L+ + T +E+  + +P+ I
Sbjct:  107 KPLTRRGLNTSILLCLRDARFXDFSDSILGMVESSLCNGPIHFDCFPDLTISLSDPHMXKALTLNIKTSGYKVLEGTQPLALIYRIYYKVTGTNMNFQALTKSPKDHTLL-IQTDQENANIKIPRTI 232
[Close]
BLAST of Cotton_D_gene_10034574 vs. Prunus Persica v1.0
Match: ppa016797m ()

HSP 1 Score: 58.9214 bits (141), Expect = 1.773e-9
Identity = 38/116 (32.76%), Postives = 62/116 (53.45%), Query Frame = 1 
Query:   51 IALLDSRYKKYQDACIGTVEATLSSGMAMVTLFPNFTMSLQDLNLLDALKVQIQIIGAEMVESAVTTTLHYQIVYRVQD----HAFKLSNQGFEDSLLISVNTREESHCVHVPKQI 162
            + + D R++K+ D+ +G VE+TL  G      F NF+++L D+N+L AL + IQ  G +M   +    + Y++ Y+V +     A  L ++G E +L     T  E   V VPK I
Sbjct:   31 LCVRDGRHRKFPDSLLGIVESTLGKGSIYFNWFSNFSIALSDINILKALTLNIQTWGYDMDPGSQNLVIIYRVSYKVINTVCRKAKDLDSKG-ETTLF---QTNIEKSNVAVPKMI 142
[Close]
BLAST of Cotton_D_gene_10034574 vs. Prunus Persica v1.0
Match: ppa021024m ()

HSP 1 Score: 55.0694 bits (131), Expect = 2.539e-8
Identity = 36/116 (31.03%), Postives = 60/116 (51.72%), Query Frame = 1 
Query:   51 IALLDSRYKKYQDACIGTVEATLSSGMAMVTLFPNFTMSLQDLNLLDALKVQIQIIGAEMVESAVTTTLHYQIVYRVQD----HAFKLSNQGFEDSLLISVNTREESHCVHVPKQI 162
            + + D R +K+ D+ +G V +TL  G      FPNF+++L D+N+L AL + IQ    +M   +    + Y++ Y+V +     A  L ++G  ++ L   N   E   V VPK I
Sbjct:   85 LCVRDGRLRKFTDSLLGIVGSTLGEGPIYFNCFPNFSVALSDINVLKALTLNIQTQDYDMDPRSQNLAIIYRVSYKVMNIVCPKAKDLDSKG--ETTLFQTNL--EKSNVAVPKMI 196
[Close]
BLAST of Cotton_D_gene_10034574 vs. Populus trichicarpa v2.0
Match: POPTR_0005s18370.1 ()

HSP 1 Score: 146.747 bits (369), Expect = 9.410e-36
Identity = 72/143 (50.35%), Postives = 95/143 (66.43%), Query Frame = 1 
Query:   34 RLALNYHGTVEKPVVSRIALLDSRYKKYQDACIGTVEATLSSGMAMVTLFPNFTMSLQDLNLLDALKVQIQIIGAEMVESAVTTTLHYQIVYRVQDHAFKLSNQGFEDSLLISVNTREESHCVHVPKQIPKQXXXXXXXXXWV 176
            RLAL+YHG    PV +R+ALLD+RY +YQ ACIG++E TL+ G  +VT +PNF M+L D  L   LKVQ+QIIGA+ V      TLHYQ+ YRVQ+HAF L      D+LLI+V+T + + C HVP+QI K+         W+
Sbjct:  137 RLALSYHGQKGLPVAARLALLDTRYLEYQHACIGSLETTLNCGTVVVTFYPNFNMALDDPQLHHFLKVQLQIIGADQVLDTYQATLHYQMAYRVQNHAFDLVLPVTNDALLITVDTNQRATCTHVPRQILKENLLKLLPSSWI 279
[Close]
BLAST of Cotton_D_gene_10034574 vs. Populus trichicarpa v2.0
Match: POPTR_0009s00900.1 ()

HSP 1 Score: 143.28 bits (360), Expect = 1.049e-34
Identity = 71/151 (47.02%), Postives = 96/151 (63.58%), Query Frame = 1 
Query:   34 RLALNYHGTVEKPVVSRIALLDSRYK-------KYQDACIGTVEATLSSGMAMVTLFPNFTMSLQDLNLLDALKVQIQIIGAEMVESAVTTTLHYQIVYRVQDHAFKLSNQGFEDSLLISVNTREESHCVHVPKQIPKQXXXXXXXXXWVN 177
            RLAL+YHG    PV +R+ALLD+RY        +YQ ACIG+++ TL+ G  +VT +PNF M+L D  L + LKVQ+QI GA+ V      TLHYQ+ YRVQ+HAF L      D+LLI+V+T + + C HVP+QIPK+         W+ 
Sbjct:  137 RLALSYHGRKGLPVAARLALLDTRYPLLDTRYLEYQHACIGSLQTTLNCGTVVVTFYPNFNMALDDPQLHNFLKVQLQITGADQVLDTYQATLHYQMAYRVQNHAFDLVLPITNDALLITVDTNQRATCTHVPRQIPKEDLQKLLPSSWIT 287
[Close]
BLAST of Cotton_D_gene_10034574 vs. Populus trichicarpa v2.0
Match: POPTR_0011s07150.1 ()

HSP 1 Score: 119.398 bits (298), Expect = 1.720e-27
Identity = 56/101 (55.45%), Postives = 73/101 (72.28%), Query Frame = 1 
Query:   34 RLALNYHGTVEKPVVSRIALLDSRYKKYQDACIGTVEATLSSGMAMVTLFPNFTMSLQDLNLLDALKVQIQIIGAEMVESAVTTTLHYQIVYRVQDHAFKL 134
            RLAL+YHG    PV +++ALLD+RY +YQ ACIG+++ TL  GM +VT +PNF M+L D  L + LKVQ+QI GA+ V      TLHYQ+ YRVQ+HAF L
Sbjct:   88 RLALSYHGRKGLPVAAQLALLDTRYLEYQHACIGSLKTTLDCGMVVVTFYPNFNMALDDPQLHNFLKVQLQITGADQVLDTYQATLHYQMAYRVQNHAFDL 188
[Close]
BLAST of Cotton_D_gene_10034574 vs. Populus trichicarpa v2.0
Match: POPTR_0005s17220.1 ()

HSP 1 Score: 58.5362 bits (140), Expect = 3.573e-9
Identity = 30/104 (28.85%), Postives = 60/104 (57.69%), Query Frame = 1 
Query:   51 IALLDSRYKKYQDACIGTVEATLSSGMAMVTLFPNFTMSLQDLNLLDALKVQIQIIGAEMVESAVTTTLHYQIVYRV------QDHAFKLSNQGFEDSLLISVN 148
            + L D+R++ +QD+   ++E++L +G      +PN T+ L+D N+L ++ +QI+     M+E ++   L ++I Y+V        H F+ S +G  ++LL+  N
Sbjct:   39 VVLKDARFQNFQDSLFSSIESSLCTGPIFFYCYPNLTIPLKDRNILQSMILQIKTYNYNMLEGSIPVALIFKIRYKVMFSTFASKHKFQ-SQKG--ETLLLQTN 139
[Close]
BLAST of Cotton_D_gene_10034574 vs. Populus trichicarpa v2.0
Match: POPTR_0017s09990.1 ()

HSP 1 Score: 53.5286 bits (127), Expect = 9.566e-8
Identity = 26/80 (32.50%), Postives = 55/80 (68.75%), Query Frame = 1 
Query:   53 LLDSRYKKYQDACIGTVEATLSSGMAMVTLFPNFTMSLQDLNLLDALKVQIQIIGAEMVESAVTTTLHYQIVYRVQDHAF 132
            L D+R++ +QD+ + ++E+++ SG+     +PN T+SL+D N+L ++++QI+    +M+E +++  L ++I Y+V   AF
Sbjct:   26 LRDARFQNFQDSLLSSIESSICSGLVSFDCYPNITISLKDKNILQSMQLQIKTHNYDMLEGSISIALIFKIHYKVMFSAF 105
[Close]
BLAST of Cotton_D_gene_10034574 vs. Populus trichicarpa v2.0
Match: POPTR_0010s00240.1 ()

HSP 1 Score: 51.6026 bits (122), Expect = 4.516e-7
Identity = 25/80 (31.25%), Postives = 46/80 (57.50%), Query Frame = 1 
Query:   53 LLDSRYKKYQDACIGTVEATLSSGMAMVTLFPNFTMSLQDLNLLDALKVQIQIIGAEMVESAVTTTLHYQIVYRVQDHAF 132
            L D+R+  +QD+ +  +E +L S +     +PN T+SL D N+L ++ +QI+     M+E ++   L ++I Y+    AF
Sbjct:   59 LRDARFHNFQDSLLSFIEFSLCSSLVSFDCYPNLTISLIDKNILQSMLLQIKTHKYNMLEGSIFVALIFKIHYKAMFSAF 138
[Close]
BLAST of Cotton_D_gene_10034574 vs. Populus trichicarpa v2.0
Match: POPTR_0011s03170.1 ()

HSP 1 Score: 50.8322 bits (120), Expect = 7.964e-7
Identity = 35/106 (33.02%), Postives = 64/106 (60.38%), Query Frame = 1 
Query:   31 IYKRLALNY---HGTVEKPVVSRIALL-DSRYKKYQDACIGTVEATLSSGMAMVTLFPNFTMSLQDLNLLDALKVQIQIIGAEMVESAVTTTLHYQIVYRVQDHAF 132
            + K LA NY   H  +E    S +A+L D+R++ +QD+ + ++E++L SG      +PN T+SL+D N+L ++ +QI+    +M+E ++   L ++I Y+    AF
Sbjct:   92 LQKHLARNYKYIHVGLEGLNTSILAVLRDARFQNFQDSLLSSIESSLYSGPVSFDCYPNITISLKDKNILQSMLLQIKTHNYDMLEGSILVALIFKIHYKAMFSAF 197
[Close]
BLAST of Cotton_D_gene_10034574 vs. ExPASy TrEMBL
Match: A0A068VNF6_COFCA (Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00003190001 PE=4 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.003e-49
Identity = 81/143 (56.64%), Postives = 108/143 (75.52%), Query Frame = 0 
Query:   34 RLALNYHGTVEKPVVSRIALLDSRYKKYQDACIGTVEATLSSGMAMVTLFPNFTMSLQDLNLLDALKVQIQIIGAEMVESAVTTTLHYQIVYRVQDHAFKLSNQGFEDSLLISVNTREESHCVHVPKQIPKQELLKLLLEKWV 176
            R++L+YHG    PVV+R+ALLD+R+ +YQ ACI TVE TL++G   VTLFPNF MSL D +LLDALKVQ+QI+GA+ V+ A+  TLHYQ+VYRVQ+HA  L   G ED+LLI V+ +  + C+HVP+QI K  L++LL   W+
Sbjct:  123 RISLSYHGRKGLPVVARVALLDTRFTQYQHACIATVETTLNAGTVFVTLFPNFNMSLADPHLLDALKVQVQIVGADQVQDAIAATLHYQMVYRVQNHALDLKVLGSEDALLIQVDEKNSTSCIHVPRQISKSNLVQLLPNSWI 265
[Close]
BLAST of Cotton_D_gene_10034574 vs. ExPASy TrEMBL
Match: A0A068VIF9_COFCA (Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00003291001 PE=4 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.557e-47
Identity = 81/143 (56.64%), Postives = 109/143 (76.22%), Query Frame = 0 
Query:   34 RLALNYHGTVEKPVVSRIALLDSRYKKYQDACIGTVEATLSSGMAMVTLFPNFTMSLQDLNLLDALKVQIQIIGAEMVESAVTTTLHYQIVYRVQDHAFKLSNQGFEDSLLISVNTREESHCVHVPKQIPKQELLKLLLEKWV 176
            R++L++HG    P+V+RIALLD+R+K+YQ ACI T E TL++G   VTLFPNF MSL D +LL+ALKVQ+QIIGAE V  ++  TLHYQ+VYRVQ+HA  L+  G E++LLI V+ +  + C HVP+QI KQEL++LL   W+
Sbjct:  124 RISLSFHGRKGLPIVARIALLDTRFKQYQHACIATTETTLNAGTVFVTLFPNFNMSLADPHLLEALKVQVQIIGAEQVSDSIAATLHYQMVYRVQNHALDLAIPGGENALLIRVDEKNGASCSHVPRQISKQELIQLLPNDWI 266
[Close]
BLAST of Cotton_D_gene_10034574 vs. ExPASy TrEMBL
Match: A0A061FTM0_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_012065 PE=4 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.971e-47
Identity = 82/145 (56.55%), Postives = 107/145 (73.79%), Query Frame = 0 
Query:   34 RLALNYHGTVEKPVVSRIALLDSRYKKYQDACIGTVEATLSSGMAMVTLFPNFTMSLQDLNLLDALKVQIQIIGAEMVESAVTTTLHYQIVYRVQDHAFKLS--NQGFEDSLLISVNTREESHCVHVPKQIPKQELLKLLLEKWV 176
            RLALNYHG   + VV+ +ALLDSRY KY+ ACIGTVE TL++   +VTLFPN+TM+L D NLL ALKVQ+QII A  +  A+  TLHYQ+VY+VQDHAF LS       D+L++++N  +   C  VPK+IP+++L KLL EKW+
Sbjct:  129 RLALNYHGREGQSVVAHMALLDSRYIKYEHACIGTVEDTLNTKTLIVTLFPNYTMALCDPNLLSALKVQVQIIRAPQIPFAIIATLHYQMVYKVQDHAFNLSKIQTNLNDALVLAINISQALICSFVPKRIPREDLAKLLPEKWI 273
[Close]
BLAST of Cotton_D_gene_10034574 vs. ExPASy TrEMBL
Match: A0A068VML4_COFCA (Uncharacterized protein (Fragment) OS=Coffea canephora OX=49390 GN=GSCOC_T00002405001 PE=4 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 3.528e-47
Identity = 82/143 (57.34%), Postives = 108/143 (75.52%), Query Frame = 0 
Query:   34 RLALNYHGTVEKPVVSRIALLDSRYKKYQDACIGTVEATLSSGMAMVTLFPNFTMSLQDLNLLDALKVQIQIIGAEMVESAVTTTLHYQIVYRVQDHAFKLSNQGFEDSLLISVNTREESHCVHVPKQIPKQELLKLLLEKWV 176
            R++L++HG    PVV+RIALLD R+K+YQ ACI T E TL++G   VTLFPNF MSL + +LL+ALKVQ+QIIGAE V  A+  TLHYQ+VYRVQ+HA  L+  G E++LLI V+ +  + C HVP+QI KQEL++LL   W+
Sbjct:  110 RISLSFHGRKGLPVVARIALLDIRFKQYQHACIATTETTLNAGTIFVTLFPNFNMSLAEPHLLEALKVQVQIIGAEQVLDAIAATLHYQMVYRVQNHALDLAIPGGENALLIRVDEKNGASCTHVPRQISKQELIQLLPNDWI 252
[Close]
BLAST of Cotton_D_gene_10034574 vs. ExPASy TrEMBL
Match: X2G0D8_9VIRU (Movement protein OS=Aristotelia chilensis virus 1 OX=1476980 PE=4 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 8.215e-47
Identity = 81/144 (56.25%), Postives = 106/144 (73.61%), Query Frame = 0 
Query:   34 RLALNYHGTVEKPVVSRIALLDSRYKKYQDACIGTVEATLSSGMAMVTLFPNFTMSLQDLNLLDALKVQIQIIGAEMVESAVTTTLHYQIVYRVQDHAFKLS-NQGFEDSLLISVNTREESHCVHVPKQIPKQELLKLLLEKWV 176
            RLAL +HG    P+ SRIALLDSR+ +YQ ACIGT+E TL++G   VTLFPNF M L+D +LL ALKVQ+QI+GA  V+     TLHYQ+VYRVQ+HA  L+  +G ED+LLI+V++     C HVPKQIP+ EL+K++   W+
Sbjct:  146 RLALTFHGRKGLPISSRIALLDSRFLEYQHACIGTIETTLNAGTVFVTLFPNFNMPLKDPHLLTALKVQVQIVGATQVQETFGATLHYQLVYRVQNHALDLAVPKGTEDALLINVDSTHVPSCTHVPKQIPRSELVKIIPASWI 289
[Close]
BLAST of Cotton_D_gene_10034574 vs. ExPASy TrEMBL
Match: A0A068V6T9_COFCA (Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00018881001 PE=4 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.197e-46
Identity = 82/143 (57.34%), Postives = 108/143 (75.52%), Query Frame = 0 
Query:   34 RLALNYHGTVEKPVVSRIALLDSRYKKYQDACIGTVEATLSSGMAMVTLFPNFTMSLQDLNLLDALKVQIQIIGAEMVESAVTTTLHYQIVYRVQDHAFKLSNQGFEDSLLISVNTREESHCVHVPKQIPKQELLKLLLEKWV 176
            R++L++HG    PVV+RIALLD+R+K+YQ ACI T E TL++G   VTLFPNF MSL D +LL+ALKVQ+QIIGAE V  A+  TLH Q+VYRVQ+HA  L+  G E++LLI V+ +  + C HVP+QI KQEL++LL   W+
Sbjct:   97 RISLSFHGRKGLPVVARIALLDTRFKQYQHACIATTETTLNAGTVFVTLFPNFNMSLVDPHLLEALKVQVQIIGAEQVSDAIAATLHDQMVYRVQNHALDLAIPGGENALLIRVDEKNGASCTHVPRQISKQELIQLLPNDWI 239
[Close]
BLAST of Cotton_D_gene_10034574 vs. ExPASy TrEMBL
Match: A0A068VD73_COFCA (Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00003547001 PE=4 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.289e-46
Identity = 77/143 (53.85%), Postives = 107/143 (74.83%), Query Frame = 0 
Query:   34 RLALNYHGTVEKPVVSRIALLDSRYKKYQDACIGTVEATLSSGMAMVTLFPNFTMSLQDLNLLDALKVQIQIIGAEMVESAVTTTLHYQIVYRVQDHAFKLSNQGFEDSLLISVNTREESHCVHVPKQIPKQELLKLLLEKWV 176
            R++L++HG    PVV+R+ALLD+R+K+YQ ACI T E TL+ G+  VTLFPNF MSL D +LLDALKV++QIIG E V  A+  TLHYQ+VYR+++HA  L+  G E++LLI ++ +  + C HVP+QI K EL++LL   W+
Sbjct:  124 RISLSFHGRKGLPVVARVALLDTRFKQYQHACIATTETTLNVGIVFVTLFPNFNMSLADPHLLDALKVKVQIIGVEQVSDAIAATLHYQMVYRIKNHALDLTIPGGENALLIRIDEKNSASCTHVPRQITKSELIQLLPNSWI 266
[Close]
BLAST of Cotton_D_gene_10034574 vs. ExPASy TrEMBL
Match: A0A068VL04_COFCA (Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00008106001 PE=4 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 2.594e-46
Identity = 81/152 (53.29%), Postives = 109/152 (71.71%), Query Frame = 0 
Query:   34 RLALNYHGTVEKPVVSRIALLDSRYKKYQDACIGTVEATLSSGMAMVTLFPNFTMSLQDLNLLDALKVQIQIIGAEMVESAVTTTLHYQIVYRVQDHAFKLSNQGFEDSLLISVNTREESHCVHVPKQIPKQELLKLLLEKWVNVQDVRHLF 185
            R++L++HG    PVV+R+ALLD+R+K+YQ ACI T E TL++G   VTLFPNF MSL D +LL+ALKVQ+QIIGAE V  A+  TLHYQ+VYRVQ+HA  L+  G E++LLI V+ +  + C HVP+QI KQ+    +   +  VQD+   F
Sbjct:  123 RISLSFHGRKGLPVVARVALLDTRFKQYQHACIATTETTLNAGTVFVTLFPNFNMSLADPHLLEALKVQVQIIGAEQVSDAIAATLHYQMVYRVQNHALDLAIPGGENALLIRVDEKNGASCTHVPRQISKQDF--KISSSFYYVQDIIKYF 272
[Close]
BLAST of Cotton_D_gene_10034574 vs. ExPASy TrEMBL
Match: A0A068VLL0_COFCA (Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00006931001 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.328e-45
Identity = 80/143 (55.94%), Postives = 108/143 (75.52%), Query Frame = 0 
Query:   34 RLALNYHGTVEKPVVSRIALLDSRYKKYQDACIGTVEATLSSGMAMVTLFPNFTMSLQDLNLLDALKVQIQIIGAEMVESAVTTTLHYQIVYRVQDHAFKLSNQGFEDSLLISVNTREESHCVHVPKQIPKQELLKLLLEKWV 176
            R++L++HG    P+V+RIALLD+R+K+YQ ACI T E TL++G   VTLFPNF MSL D +LL+ALKVQ+QIIGAE V  ++  TLHYQ+VY VQ+HA  L+  G E++LLI V+ +  + C HVP+QI KQEL++LL   W+
Sbjct:  124 RISLSFHGRKGLPIVARIALLDTRFKQYQHACIATTETTLNAGTVFVTLFPNFNMSLADPHLLEALKVQVQIIGAEQVSDSIAATLHYQMVYCVQNHALDLAIPGGENALLIRVDEKNGASCSHVPRQISKQELIQLLPTDWI 266
[Close]
BLAST of Cotton_D_gene_10034574 vs. ExPASy TrEMBL
Match: A0A068VFE4_COFCA (Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00000032001 PE=4 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 3.193e-45
Identity = 82/144 (56.94%), Postives = 109/144 (75.69%), Query Frame = 0 
Query:   34 RLALNYHGTVEKPVVSRIALLDSRYKKYQDACIGTVEATLSSGMAMVTLFPNFTMSLQDLNLLDALKVQIQIIGAEMVESAVTTTLHYQ-IVYRVQDHAFKLSNQGFEDSLLISVNTREESHCVHVPKQIPKQELLKLLLEKWV 176
            R++L++HG    PVV+RIALLD+R+K+YQ ACI T E TL++G   VTLFPNF MSL D +LL+ALKVQ+QIIGAE V  A+  TLHYQ +VYRVQ++A  L+  G E++LLI V+ +  + C HVP+QI KQEL++LL   W+
Sbjct:  124 RISLSFHGRKGLPVVARIALLDTRFKQYQHACIATTETTLNAGTVFVTLFPNFNMSLADPHLLEALKVQVQIIGAEQVSDAIAATLHYQMMVYRVQNYALDLAIPGGENALLIRVDEKNGASCPHVPRQISKQELIQLLPNDWI 267
[Close]
BLAST of Cotton_D_gene_10034574 vs. NCBI nr
Match: gi|823136436|ref|XP_012467980.1| (PREDICTED: uncharacterized protein LOC105786190 [Gossypium raimondii])

HSP 1 Score: 179.874 bits (455), Expect = 2.180e-53
Identity = 86/101 (85.15%), Postives = 92/101 (91.09%), Query Frame = 0 
Query:   77 MAMVTLFPNFTMSLQDLNLLDALKVQIQIIGAEMVESAVTTTLHYQIVYRVQDHAFKLSNQGFEDSLLISVNTREESHCVHVPKQIPKQELLKLLLEKWVN 177
            MAMVTLFPNFTMSLQD NL+DALK+QIQII AEM+ESAVT TLHYQIVYRVQDHAFKLSNQG +DSL+ISVNT+EE HCVHVPKQIPKQELLKL  EK V 
Sbjct:    1 MAMVTLFPNFTMSLQDPNLMDALKIQIQIIEAEMIESAVTATLHYQIVYRVQDHAFKLSNQGSKDSLIISVNTKEEPHCVHVPKQIPKQELLKLFPEKCVT 101
[Close]
BLAST of Cotton_D_gene_10034574 vs. NCBI nr
Match: gi|823257644|ref|XP_012461495.1| (PREDICTED: uncharacterized protein LOC105781506 [Gossypium raimondii])

HSP 1 Score: 171.785 bits (434), Expect = 8.963e-50
Identity = 85/98 (86.73%), Postives = 89/98 (90.82%), Query Frame = 0 
Query:   79 MVTLFPNFTMSLQDLNLLDALKVQIQIIGAEMVESAVTTTLHYQIVYRVQDHAFKLSNQGFEDSLLISVNTREESHCVHVPKQIPKQELLKLLLEKWV 176
            MVTLFPNFTMSLQD NLLDALKVQIQIIGA+MVES VT TLHYQIVYRVQDHAFKLS+ G EDSLLI VNT+EES+CVHVPKQIPKQELLK L E WV
Sbjct:    1 MVTLFPNFTMSLQDPNLLDALKVQIQIIGAKMVESVVTATLHYQIVYRVQDHAFKLSHHGSEDSLLIYVNTKEESYCVHVPKQIPKQELLKFLPEMWV 98
[Close]
BLAST of Cotton_D_gene_10034574 vs. NCBI nr
Match: gi|661872280|emb|CDP21233.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 176.792 bits (447), Expect = 1.194e-49
Identity = 81/143 (56.64%), Postives = 108/143 (75.52%), Query Frame = 0 
Query:   34 RLALNYHGTVEKPVVSRIALLDSRYKKYQDACIGTVEATLSSGMAMVTLFPNFTMSLQDLNLLDALKVQIQIIGAEMVESAVTTTLHYQIVYRVQDHAFKLSNQGFEDSLLISVNTREESHCVHVPKQIPKQELLKLLLEKWV 176
            R++L+YHG    PVV+R+ALLD+R+ +YQ ACI TVE TL++G   VTLFPNF MSL D +LLDALKVQ+QI+GA+ V+ A+  TLHYQ+VYRVQ+HA  L   G ED+LLI V+ +  + C+HVP+QI K  L++LL   W+
Sbjct:  123 RISLSYHGRKGLPVVARVALLDTRFTQYQHACIATVETTLNAGTVFVTLFPNFNMSLADPHLLDALKVQVQIVGADQVQDAIAATLHYQMVYRVQNHALDLKVLGSEDALLIQVDEKNSTSCIHVPRQISKSNLVQLLPNSWI 265
[Close]
BLAST of Cotton_D_gene_10034574 vs. NCBI nr
Match: gi|661874669|emb|CDP20491.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 175.637 bits (444), Expect = 1.854e-47
Identity = 81/143 (56.64%), Postives = 109/143 (76.22%), Query Frame = 0 
Query:   34 RLALNYHGTVEKPVVSRIALLDSRYKKYQDACIGTVEATLSSGMAMVTLFPNFTMSLQDLNLLDALKVQIQIIGAEMVESAVTTTLHYQIVYRVQDHAFKLSNQGFEDSLLISVNTREESHCVHVPKQIPKQELLKLLLEKWV 176
            R++L++HG    P+V+RIALLD+R+K+YQ ACI T E TL++G   VTLFPNF MSL D +LL+ALKVQ+QIIGAE V  ++  TLHYQ+VYRVQ+HA  L+  G E++LLI V+ +  + C HVP+QI KQEL++LL   W+
Sbjct:  124 RISLSFHGRKGLPIVARIALLDTRFKQYQHACIATTETTLNAGTVFVTLFPNFNMSLADPHLLEALKVQVQIIGAEQVSDSIAATLHYQMVYRVQNHALDLAIPGGENALLIRVDEKNGASCSHVPRQISKQELIQLLPNDWI 266
[Close]
BLAST of Cotton_D_gene_10034574 vs. NCBI nr
Match: gi|508773464|gb|EOY20720.1| (Uncharacterized protein TCM_012065 [Theobroma cacao])

HSP 1 Score: 166.007 bits (419), Expect = 2.346e-47
Identity = 82/145 (56.55%), Postives = 107/145 (73.79%), Query Frame = 0 
Query:   34 RLALNYHGTVEKPVVSRIALLDSRYKKYQDACIGTVEATLSSGMAMVTLFPNFTMSLQDLNLLDALKVQIQIIGAEMVESAVTTTLHYQIVYRVQDHAFKLS--NQGFEDSLLISVNTREESHCVHVPKQIPKQELLKLLLEKWV 176
            RLALNYHG   + VV+ +ALLDSRY KY+ ACIGTVE TL++   +VTLFPN+TM+L D NLL ALKVQ+QII A  +  A+  TLHYQ+VY+VQDHAF LS       D+L++++N  +   C  VPK+IP+++L KLL EKW+
Sbjct:  129 RLALNYHGREGQSVVAHMALLDSRYIKYEHACIGTVEDTLNTKTLIVTLFPNYTMALCDPNLLSALKVQVQIIRAPQIPFAIIATLHYQMVYKVQDHAFNLSKIQTNLNDALVLAINISQALICSFVPKRIPREDLAKLLPEKWI 273
[Close]
BLAST of Cotton_D_gene_10034574 vs. NCBI nr
Match: gi|661864854|emb|CDP22020.1| (unnamed protein product, partial [Coffea canephora])

HSP 1 Score: 172.17 bits (435), Expect = 4.200e-47
Identity = 82/143 (57.34%), Postives = 108/143 (75.52%), Query Frame = 0 
Query:   34 RLALNYHGTVEKPVVSRIALLDSRYKKYQDACIGTVEATLSSGMAMVTLFPNFTMSLQDLNLLDALKVQIQIIGAEMVESAVTTTLHYQIVYRVQDHAFKLSNQGFEDSLLISVNTREESHCVHVPKQIPKQELLKLLLEKWV 176
            R++L++HG    PVV+RIALLD R+K+YQ ACI T E TL++G   VTLFPNF MSL + +LL+ALKVQ+QIIGAE V  A+  TLHYQ+VYRVQ+HA  L+  G E++LLI V+ +  + C HVP+QI KQEL++LL   W+
Sbjct:  110 RISLSFHGRKGLPVVARIALLDIRFKQYQHACIATTETTLNAGTIFVTLFPNFNMSLAEPHLLEALKVQVQIIGAEQVLDAIAATLHYQMVYRVQNHALDLAIPGGENALLIRVDEKNGASCTHVPRQISKQELIQLLPNDWI 252
[Close]
BLAST of Cotton_D_gene_10034574 vs. NCBI nr
Match: gi|597569520|gb|AHN13809.1| (movement protein [Aristotelia chilensis virus 1])

HSP 1 Score: 174.096 bits (440), Expect = 9.779e-47
Identity = 81/144 (56.25%), Postives = 106/144 (73.61%), Query Frame = 0 
Query:   34 RLALNYHGTVEKPVVSRIALLDSRYKKYQDACIGTVEATLSSGMAMVTLFPNFTMSLQDLNLLDALKVQIQIIGAEMVESAVTTTLHYQIVYRVQDHAFKLS-NQGFEDSLLISVNTREESHCVHVPKQIPKQELLKLLLEKWV 176
            RLAL +HG    P+ SRIALLDSR+ +YQ ACIGT+E TL++G   VTLFPNF M L+D +LL ALKVQ+QI+GA  V+     TLHYQ+VYRVQ+HA  L+  +G ED+LLI+V++     C HVPKQIP+ EL+K++   W+
Sbjct:  146 RLALTFHGRKGLPISSRIALLDSRFLEYQHACIGTIETTLNAGTVFVTLFPNFNMPLKDPHLLTALKVQVQIVGATQVQETFGATLHYQLVYRVQNHALDLAVPKGTEDALLINVDSTHVPSCTHVPKQIPRSELVKIIPASWI 289
[Close]
BLAST of Cotton_D_gene_10034574 vs. NCBI nr
Match: gi|661879773|emb|CDP16520.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 173.326 bits (438), Expect = 1.425e-46
Identity = 82/143 (57.34%), Postives = 108/143 (75.52%), Query Frame = 0 
Query:   34 RLALNYHGTVEKPVVSRIALLDSRYKKYQDACIGTVEATLSSGMAMVTLFPNFTMSLQDLNLLDALKVQIQIIGAEMVESAVTTTLHYQIVYRVQDHAFKLSNQGFEDSLLISVNTREESHCVHVPKQIPKQELLKLLLEKWV 176
            R++L++HG    PVV+RIALLD+R+K+YQ ACI T E TL++G   VTLFPNF MSL D +LL+ALKVQ+QIIGAE V  A+  TLH Q+VYRVQ+HA  L+  G E++LLI V+ +  + C HVP+QI KQEL++LL   W+
Sbjct:   97 RISLSFHGRKGLPVVARIALLDTRFKQYQHACIATTETTLNAGTVFVTLFPNFNMSLVDPHLLEALKVQVQIIGAEQVSDAIAATLHDQMVYRVQNHALDLAIPGGENALLIRVDEKNGASCTHVPRQISKQELIQLLPNDWI 239
[Close]
BLAST of Cotton_D_gene_10034574 vs. NCBI nr
Match: gi|661877674|emb|CDP18514.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 169.859 bits (429), Expect = 1.534e-46
Identity = 77/143 (53.85%), Postives = 107/143 (74.83%), Query Frame = 0 
Query:   34 RLALNYHGTVEKPVVSRIALLDSRYKKYQDACIGTVEATLSSGMAMVTLFPNFTMSLQDLNLLDALKVQIQIIGAEMVESAVTTTLHYQIVYRVQDHAFKLSNQGFEDSLLISVNTREESHCVHVPKQIPKQELLKLLLEKWV 176
            R++L++HG    PVV+R+ALLD+R+K+YQ ACI T E TL+ G+  VTLFPNF MSL D +LLDALKV++QIIG E V  A+  TLHYQ+VYR+++HA  L+  G E++LLI ++ +  + C HVP+QI K EL++LL   W+
Sbjct:  124 RISLSFHGRKGLPVVARVALLDTRFKQYQHACIATTETTLNVGIVFVTLFPNFNMSLADPHLLDALKVKVQIIGVEQVSDAIAATLHYQMVYRIKNHALDLTIPGGENALLIRIDEKNSASCTHVPRQITKSELIQLLPNSWI 266
[Close]
BLAST of Cotton_D_gene_10034574 vs. NCBI nr
Match: gi|661872161|emb|CDP21259.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 166.392 bits (420), Expect = 3.088e-46
Identity = 81/152 (53.29%), Postives = 109/152 (71.71%), Query Frame = 0 
Query:   34 RLALNYHGTVEKPVVSRIALLDSRYKKYQDACIGTVEATLSSGMAMVTLFPNFTMSLQDLNLLDALKVQIQIIGAEMVESAVTTTLHYQIVYRVQDHAFKLSNQGFEDSLLISVNTREESHCVHVPKQIPKQELLKLLLEKWVNVQDVRHLF 185
            R++L++HG    PVV+R+ALLD+R+K+YQ ACI T E TL++G   VTLFPNF MSL D +LL+ALKVQ+QIIGAE V  A+  TLHYQ+VYRVQ+HA  L+  G E++LLI V+ +  + C HVP+QI KQ+    +   +  VQD+   F
Sbjct:  123 RISLSFHGRKGLPVVARVALLDTRFKQYQHACIATTETTLNAGTVFVTLFPNFNMSLADPHLLEALKVQVQIIGAEQVSDAIAATLHYQMVYRVQNHALDLAIPGGENALLIRVDEKNGASCTHVPRQISKQDF--KISSSFYYVQDIIKYF 272
[Close]
BLAST of Cotton_D_gene_10034574 vs. ExPASy Swiss-Prot
Match: POLG_PVCV1 (Genome polyprotein OS=Petunia vein clearing virus (isolate Shepherd) OX=492094 PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 9.640e-42
Identity = 73/156 (46.79%), Postives = 108/156 (69.23%), Query Frame = 0 
Query:   34 RLALNYHGTVEKPVVSRIALLDSRYKKYQDACIGTVEATLSSGMAMVTLFPNFTMSLQDLNLLDALKVQIQIIGAEMVESAVTTTLHYQIVYRVQDHAFKLSNQGFEDSLLISVNTRE-ESHCVHVPKQIPKQELLKLLLEKWV-NVQDVRHLFMP 187
            ++AL YHG   +PVV+R+ALLD+RY +YQ A +GT E TL++G   +TLFPNFTMSL D NL  ALK+Q+QI GA + + ++  TLHYQI +RVQ+HA  L+  G E++L + ++     + C  VP+Q+ K++L+K+L + WV N + +R    P
Sbjct:  131 KIALTYHGRKGQPVVARLALLDTRYLEYQHANLGTAEITLNAGTVFITLFPNFTMSLSDANLSTALKIQVQIQGAPLTKDSIQATLHYQIAWRVQNHAMDLTLPGGEEALFLKIDAGSGATQCTQVPRQLSKEDLIKILPDSWVTNYEKLREPEEP 286
[Close]
BLAST of Cotton_D_gene_10034574 vs. ExPASy Swiss-Prot
Match: POLG_PVCV2 (Genome polyprotein OS=Petunia vein clearing virus (isolate Hohn) OX=492095 PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.067e-41
Identity = 70/144 (48.61%), Postives = 103/144 (71.53%), Query Frame = 0 
Query:   34 RLALNYHGTVEKPVVSRIALLDSRYKKYQDACIGTVEATLSSGMAMVTLFPNFTMSLQDLNLLDALKVQIQIIGAEMVESAVTTTLHYQIVYRVQDHAFKLSNQGFEDSLLISVNT-REESHCVHVPKQIPKQELLKLLLEKWV 176
            ++AL YHG   +PVV+R+ALLD+RY +YQ A +GT E TL++G   +TLFPNFTMSL D NL  ALK+Q+QI GA + + ++  TLHYQI +RVQ+HA  L+  G E++L + ++     + C  VP+Q+ K++L+K+L + WV
Sbjct:  132 KIALTYHGRKGQPVVARLALLDTRYLEYQHANLGTAEITLNAGTVFITLFPNFTMSLSDANLSTALKIQVQIQGAPLTKDSIQATLHYQIAWRVQNHAMDLTLPGGEEALFLKIDAGNGATQCTQVPRQLSKEDLIKILPDSWV 275
The following BLAST results are available for this feature:
BLAST of Cotton_D_gene_10034574 vs. Malus x Domestica v1.0
Analysis Date: 2012-11-01 (BLASTx of BGI-CGP D genome v1.0 vs Malus x domestica Genome v1.0)
Total hits: 1
Match NameE-valueIdentityDescription
MDP00005807393.645e-827.56MDP0000580739[more]
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BLAST of Cotton_D_gene_10034574 vs. Prunus Persica v1.0
Analysis Date: 2012-11-01 (BLASTx of BGI-CGP D genome v1.0 vs Prunus persica Genome v1.0)
Total hits: 2
Match NameE-valueIdentityDescription
ppa016797m1.773e-932.76[more]
ppa021024m2.539e-831.03[more]
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BLAST of Cotton_D_gene_10034574 vs. Populus trichicarpa v2.0
Analysis Date: 2012-11-01 (BLASTx of BGI-CGP D genome v1.0 vs Populus Genome v2.0)
Total hits: 7
Match NameE-valueIdentityDescription
POPTR_0005s18370.19.410e-3650.35[more]
POPTR_0009s00900.11.049e-3447.02[more]
POPTR_0011s07150.11.720e-2755.45[more]
POPTR_0005s17220.13.573e-928.85[more]
POPTR_0017s09990.19.566e-832.50[more]
POPTR_0010s00240.14.516e-731.25[more]
POPTR_0011s03170.17.964e-733.02[more]
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BLAST of Cotton_D_gene_10034574 vs. ExPASy TrEMBL
Analysis Date: 2019-06-26 (BLASTx of BGI-CGP D genome v1.0 vs Uniprot TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
A0A068VNF6_COFCA1.003e-4956.64Uncharacterized protein OS=Coffea canephora OX=493... [more]
A0A068VIF9_COFCA1.557e-4756.64Uncharacterized protein OS=Coffea canephora OX=493... [more]
A0A061FTM0_THECC1.971e-4756.55Uncharacterized protein OS=Theobroma cacao OX=3641... [more]
A0A068VML4_COFCA3.528e-4757.34Uncharacterized protein (Fragment) OS=Coffea canep... [more]
X2G0D8_9VIRU8.215e-4756.25Movement protein OS=Aristotelia chilensis virus 1 ... [more]
A0A068V6T9_COFCA1.197e-4657.34Uncharacterized protein OS=Coffea canephora OX=493... [more]
A0A068VD73_COFCA1.289e-4653.85Uncharacterized protein OS=Coffea canephora OX=493... [more]
A0A068VL04_COFCA2.594e-4653.29Uncharacterized protein OS=Coffea canephora OX=493... [more]
A0A068VLL0_COFCA1.328e-4555.94Uncharacterized protein OS=Coffea canephora OX=493... [more]
A0A068VFE4_COFCA3.193e-4556.94Uncharacterized protein OS=Coffea canephora OX=493... [more]
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BLAST of Cotton_D_gene_10034574 vs. NCBI nr
Analysis Date: 2019-06-28 (BLASTx of BGI-CGP D genome v1.0 vs NCBI nr)
Total hits: 10
Match NameE-valueIdentityDescription
gi|823136436|ref|XP_012467980.1|2.180e-5385.15PREDICTED: uncharacterized protein LOC105786190 [G... [more]
gi|823257644|ref|XP_012461495.1|8.963e-5086.73PREDICTED: uncharacterized protein LOC105781506 [G... [more]
gi|661872280|emb|CDP21233.1|1.194e-4956.64unnamed protein product [Coffea canephora][more]
gi|661874669|emb|CDP20491.1|1.854e-4756.64unnamed protein product [Coffea canephora][more]
gi|508773464|gb|EOY20720.1|2.346e-4756.55Uncharacterized protein TCM_012065 [Theobroma caca... [more]
gi|661864854|emb|CDP22020.1|4.200e-4757.34unnamed protein product, partial [Coffea canephora... [more]
gi|597569520|gb|AHN13809.1|9.779e-4756.25movement protein [Aristotelia chilensis virus 1][more]
gi|661879773|emb|CDP16520.1|1.425e-4657.34unnamed protein product [Coffea canephora][more]
gi|661877674|emb|CDP18514.1|1.534e-4653.85unnamed protein product [Coffea canephora][more]
gi|661872161|emb|CDP21259.1|3.088e-4653.29unnamed protein product [Coffea canephora][more]
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BLAST of Cotton_D_gene_10034574 vs. ExPASy Swiss-Prot
Analysis Date: 2019-06-28 (BLASTx of BGI-CGP D genome v1.0 vs UniProt Swiss-Prot)
Total hits: 2
Match NameE-valueIdentityDescription
POLG_PVCV19.640e-4246.79Genome polyprotein OS=Petunia vein clearing virus ... [more]
POLG_PVCV22.067e-4148.61Genome polyprotein OS=Petunia vein clearing virus ... [more]
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BLAST of Cotton_D_gene_10034574 vs. TAIR10
Analysis Date: 2019-06-26 (BLASTx of BGI-CGP D genome v1.0 vs Araport11)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan analysis of Gossypium raimondii D Genome v1.0 (BGI-CGP)
Date Performed: 2012-11-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001022Tobamoviral movement proteinPFAMPF01107MPcoord: 49..134
score: 1
NoneNo IPR availableSEGsegsegcoord: 166..174
score

Sequences
The following sequences are available for this feature:

mRNA sequence

>Cotton_D_gene_10034574-BGI-CGP_v1.0 ID=Cotton_D_gene_10034574-BGI-CGP_v1.0; Name=Cotton_D_gene_10034574; organism=Gossypium raimondii; type=mRNA; length=1394bp
ATGCTCATGGACATTTTTCCTACTAGTAGAAATAAGGGACTTTATACTTT
TAATAGGAGAAAAGGTGGGTTTCTGGTAGGTGGAGTAGGGATTTACAAGA
GGTAGGTCTGTTGCCTTGACATTTTCTTCTTCTGTAAAATATTCTACTTC
ATACAAGGAGGAAATATTTTTTGCAGTATGAGACTTTAAAGGAAAACTCG
GTAAAGTTACAGGAGCTTTGGAAGTAGAAGTTCTGGAAGTGATCATGTTT
CGCACACTTCCCTTCCTTCTGAGTTTGGGCTTTTCATATGAAAGAAAATC
TAAGAGTTGCTAGCTCTGATACCAAATATGTAGGGGAGCTTGAAGATGGG
ATATCCAGAATTAATGGATCATAACAGCAGGTATGCAATGCCAAAACTTA
GGCCCTTTTCCTCTTTTGGTCGTTTAATAGGTACTGCCTTTTAACTGTTA
ATACCATTAACCCAGAGTACTTCTCCAATCTCACCTAGATTTAGCATCCC
TGTCTAAGCTTAGTTTTTGATGTGCAGGGTCCATTGAATGGCAAGCACAG
AGCATACTTCTAAACTCATGGGAGATTTTCTTTTATTGATATTCCTTTAT
CAGAGAGGAAGAGAAACAGAGAGATTTAGAAAGACATGATTTTTAGAACT
CACTAAATTTTTTTTTTCAATTTTTCTACTTACAACTGAGGATTTAAGCT
CCTTATATAAGAGGAAAAAGTCACAGAAACAGATAAGAAGGAATCTACTT
TTACAAAGTGAAAGGCATAAAGCTAGACAAAAACTAAACAAGATACTCTT
GAAATTCCTTCGAACTTCCCGCAAGAATGGAGTCAGCATGGATATTCTCA
TATCCATTTTGGTGCGATTAGATTAGCCCTCAACTATCATGGAACTGTTG
AGAAACCAGTTGTTTCCAGAATTGCTCTCCTTGATTCTAGATACAAAAAA
TACCAGGATGCTTGTATTGGTACAGTGGAAGCAACACTAAGCTCAGGAAT
GGCCATGGTGACGTTATTCCCAAATTTCACCATGTCTTTACAAGATCTCA
ATCTCCTTGATGCTCTAAAAGTCCAGATTCAGATCATTGGAGCAGAGATG
GTGGAATCAGCAGTAACGACGACCTTGCATTACCAGATTGTATATAGAGT
TCAAGATCATGCTTTCAAGTTATCAAATCAAGGATTTGAGGATTCTCTTC
TCATTTCAGTTAATACTAGAGAAGAATCTCATTGCGTACATGTGCCAAAA
CAGATCCCAAAACAAGAGTTGCTCAAGCTCTTGCTAGAAAAATGGGTTAA
TGTGCAAGATGTGCGACACCTTTTCATGCCCAATTGCTACAATACCAAAG
ATATGCTTCTAGATAATGTATTTTTATGGAATTGTTTGGTTTAA
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protein sequence of Cotton_D_gene_10034574

>Cotton_D_gene_10034574-BGI-CGP_v1.0 ID=Cotton_D_gene_10034574-BGI-CGP_v1.0; Name=Cotton_D_gene_10034574; organism=Gossypium raimondii; type=polypeptide; length=207bp
MLMDIFPTSRNKGLYTFNRRKGGFLVGGVGIYKRLALNYHGTVEKPVVSR
IALLDSRYKKYQDACIGTVEATLSSGMAMVTLFPNFTMSLQDLNLLDALK
VQIQIIGAEMVESAVTTTLHYQIVYRVQDHAFKLSNQGFEDSLLISVNTR
EESHCVHVPKQIPKQELLKLLLEKWVNVQDVRHLFMPNCYNTKDMLLDNV
FLWNCLV
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mRNA from alignment at Chr8:25665642..25667035+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Cotton_D_gene_10034574-BGI-CGP_v1.0 ID=Cotton_D_gene_10034574-BGI-CGP_v1.0; Name=Cotton_D_gene_10034574; organism=Gossypium raimondii; type=mRNA; length=1394bp; location=Sequence derived from: Chr8:25665642..25667035+ (Gossypium raimondii
ATGCTCATGGACATTTTTCCTACTAGTAGAAATAAGGGACTTTATACTTT
TAATAGGAGAAAAGGTGGGTTTCTGGTAGGTGGAGTAGGGATTTACAAGA
GGTAGGTCTGTTGCCTTGACATTTTCTTCTTCTGTAAAATATTCTACTTC
ATACAAGGAGGAAATATTTTTTGCAGTATGAGACTTTAAAGGAAAACTCG
GTAAAGTTACAGGAGCTTTGGAAGTAGAAGTTCTGGAAGTGATCATGTTT
CGCACACTTCCCTTCCTTCTGAGTTTGGGCTTTTCATATGAAAGAAAATC
TAAGAGTTGCTAGCTCTGATACCAAATATGTAGGGGAGCTTGAAGATGGG
ATATCCAGAATTAATGGATCATAACAGCAGGTATGCAATGCCAAAACTTA
GGCCCTTTTCCTCTTTTGGTCGTTTAATAGGTACTGCCTTTTAACTGTTA
ATACCATTAACCCAGAGTACTTCTCCAATCTCACCTAGATTTAGCATCCC
TGTCTAAGCTTAGTTTTTGATGTGCAGGGTCCATTGAATGGCAAGCACAG
AGCATACTTCTAAACTCATGGGAGATTTTCTTTTATTGATATTCCTTTAT
CAGAGAGGAAGAGAAACAGAGAGATTTAGAAAGACATGATTTTTAGAACT
CACTAAATTTTTTTTTTCAATTTTTCTACTTACAACTGAGGATTTAAGCT
CCTTATATAAGAGGAAAAAGTCACAGAAACAGATAAGAAGGAATCTACTT
TTACAAAGTGAAAGGCATAAAGCTAGACAAAAACTAAACAAGATACTCTT
GAAATTCCTTCGAACTTCCCGCAAGAATGGAGTCAGCATGGATATTCTCA
TATCCATTTTGGTGCGATTAGATTAGCCCTCAACTATCATGGAACTGTTG
AGAAACCAGTTGTTTCCAGAATTGCTCTCCTTGATTCTAGATACAAAAAA
TACCAGGATGCTTGTATTGGTACAGTGGAAGCAACACTAAGCTCAGGAAT
GGCCATGGTGACGTTATTCCCAAATTTCACCATGTCTTTACAAGATCTCA
ATCTCCTTGATGCTCTAAAAGTCCAGATTCAGATCATTGGAGCAGAGATG
GTGGAATCAGCAGTAACGACGACCTTGCATTACCAGATTGTATATAGAGT
TCAAGATCATGCTTTCAAGTTATCAAATCAAGGATTTGAGGATTCTCTTC
TCATTTCAGTTAATACTAGAGAAGAATCTCATTGCGTACATGTGCCAAAA
CAGATCCCAAAACAAGAGTTGCTCAAGCTCTTGCTAGAAAAATGGGTTAA
TGTGCAAGATGTGCGACACCTTTTCATGCCCAATTGCTACAATACCAAAG
ATATGCTTCTAGATAATGTATTTTTATGGAATTGTTTGGTTTAA
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Coding sequence (CDS) from alignment at Chr8:25665642..25667035+

>Cotton_D_gene_10034574-BGI-CGP_v1.0 ID=Cotton_D_gene_10034574-BGI-CGP_v1.0; Name=Cotton_D_gene_10034574; organism=Gossypium raimondii; type=CDS; length=624bp; location=Sequence derived from: Chr8:25665642..25667035+ (Gossypium raimondii
ATGCTCATGGACATTTTTCCTACTAGTAGAAATAAGGGACTTTATACTTT
TAATAGGAGAAAAGGTGGGTTTCTGGTAGGTGGAGTAGGGATTTACAAGA
GATTAGCCCTCAACTATCATGGAACTGTTGAGAAACCAGTTGTTTCCAGA
ATTGCTCTCCTTGATTCTAGATACAAAAAATACCAGGATGCTTGTATTGG
TACAGTGGAAGCAACACTAAGCTCAGGAATGGCCATGGTGACGTTATTCC
CAAATTTCACCATGTCTTTACAAGATCTCAATCTCCTTGATGCTCTAAAA
GTCCAGATTCAGATCATTGGAGCAGAGATGGTGGAATCAGCAGTAACGAC
GACCTTGCATTACCAGATTGTATATAGAGTTCAAGATCATGCTTTCAAGT
TATCAAATCAAGGATTTGAGGATTCTCTTCTCATTTCAGTTAATACTAGA
GAAGAATCTCATTGCGTACATGTGCCAAAACAGATCCCAAAACAAGAGTT
GCTCAAGCTCTTGCTAGAAAAATGGGTTAATGTGCAAGATGTGCGACACC
TTTTCATGCCCAATTGCTACAATACCAAAGATATGCTTCTAGATAATGTA
TTTTTATGGAATTGTTTGGTTTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR001022Tobamoviral movement protein
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: Biological Process
TermDefinition
GO:0006810transport