Cotton_D_gene_10009039, Cotton_D_gene_10009039 (mRNA) Gossypium raimondii
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Cotton_D_gene_10009039 vs. ExPASy TrEMBL
Match: A0A2P5YUP5_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA01246 PE=4 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 3.429e-12 Identity = 37/82 (45.12%), Postives = 49/82 (59.76%), Query Frame = 0 Query: 1 MNFGQSMFNVGNTYWRIIATSNDWQSASDSRLFDNYTRRDDVLLTMSTGEETSNTTDVGGSENEDGNESDADPVQKISANSS 82 M+ G SMF+ GNTYW I + + WQS S ++ RRDDVL STGE TS TD GG + +ESD DP Q++ + + Sbjct: 104 MHLGGSMFDAGNTYWEITSIYSAWQSTSSWGRYEMPRRRDDVLPMTSTGEGTSYITDDGGLD----DESDVDPPQELGRDGT 181
BLAST of Cotton_D_gene_10009039 vs. ExPASy TrEMBL
Match: A0A2P5YJY7_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA04697 PE=4 SV=1) HSP 1 Score: 63.929 bits (154), Expect = 2.601e-11 Identity = 31/50 (62.00%), Postives = 38/50 (76.00%), Query Frame = 0 Query: 28 SDSRLFDNYTRRDDVLLTMSTGEETSNTTDVGGSENEDGNESDADPVQKI 77 +D + FD+YTRRDDVL T S E TSN DVG SEN +G ESDADP+Q++ Sbjct: 16 TDFKHFDDYTRRDDVLPTTSIDEGTSNKIDVGESENNEGTESDADPIQEV 65
BLAST of Cotton_D_gene_10009039 vs. ExPASy TrEMBL
Match: A0A2P5YNB2_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA03538 PE=4 SV=1) HSP 1 Score: 65.855 bits (159), Expect = 8.678e-11 Identity = 37/82 (45.12%), Postives = 47/82 (57.32%), Query Frame = 0 Query: 1 MNFGQSMFNVGNTYWRIIATSNDWQSASDSRLFDNYTRRDDVLLTMSTGEETSNTTDVGGSENEDGNESDADPVQKISANSS 82 M+ G SMF+ GNTYW T + WQS S+ ++ RRDDVL STGE TS D G E +ESD DP Q+ S + + Sbjct: 104 MHLGGSMFDAGNTYWGTTLTYSAWQSTSNWGCYETPIRRDDVLPMTSTGEGTSYVADDG----ELDDESDVDPPQEPSRDGT 181
BLAST of Cotton_D_gene_10009039 vs. ExPASy TrEMBL
Match: A0A2P5YBD7_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA07723 PE=4 SV=1) HSP 1 Score: 65.855 bits (159), Expect = 1.021e-10 Identity = 37/78 (47.44%), Postives = 47/78 (60.26%), Query Frame = 0 Query: 1 MNFGQSMFNVGNTYWRIIATSNDWQSASDSRLFDNYTRRDDVLLTMSTGEETSNTTDVGGSENEDGNESDADPVQKIS 78 M+ SMF+VGNTYW + +TS+ WQS SD R + RR DVL T ST E T GS+ +ESDADP Q+ + Sbjct: 63 MHLSGSMFDVGNTYWGMTSTSSGWQSTSDWRRCETSIRRGDVLPTTSTSEGTLYIAHDDGSD----DESDADPPQEAT 136
BLAST of Cotton_D_gene_10009039 vs. ExPASy TrEMBL
Match: A0A2P5XXT3_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA12480 PE=4 SV=1) HSP 1 Score: 65.0846 bits (157), Expect = 1.541e-10 Identity = 32/53 (60.38%), Postives = 38/53 (71.70%), Query Frame = 0 Query: 1 MNFGQSMFNVGNTYWRIIATSNDWQSASDSRLFDNYTRRDDVLLTMSTGEETS 53 M+ SMF+VGNTYW + +TS+ WQSASD R + TRRDDVL T ST E TS Sbjct: 108 MHLSGSMFDVGNTYWGMTSTSSGWQSASDWRCCETSTRRDDVLPTTSTSEGTS 160
BLAST of Cotton_D_gene_10009039 vs. ExPASy TrEMBL
Match: A0A2P5W7J0_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA33626 PE=4 SV=1) HSP 1 Score: 64.6994 bits (156), Expect = 2.281e-10 Identity = 36/73 (49.32%), Postives = 44/73 (60.27%), Query Frame = 0 Query: 1 MNFGQSMFNVGNTYWRIIATSNDWQSASDSRLFDNYTRRDDVLLTMSTGEETSNTTDVGGSENEDGNESDADP 73 M+ SMF+ GNTYW + + ++ WQS SD R + RRDDVL T STGE T GS+ NESDADP Sbjct: 1 MHLSWSMFDAGNTYWGMTSINSGWQSTSDWRRCETSIRRDDVLPTTSTGEGTFYVAHDDGSD----NESDADP 69
BLAST of Cotton_D_gene_10009039 vs. ExPASy TrEMBL
Match: A0A2P5YXP3_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA00267 PE=4 SV=1) HSP 1 Score: 64.3142 bits (155), Expect = 3.616e-10 Identity = 37/78 (47.44%), Postives = 47/78 (60.26%), Query Frame = 0 Query: 1 MNFGQSMFNVGNTYWRIIATSNDWQSASDSRLFDNYTRRDDVLLTMSTGEETSNTTDVGGSENEDGNESDADPVQKIS 78 M+ MF+ GNTYW + +TS+ WQS SD R + RRDDVL T STG+ T GS+ NESDADP ++ S Sbjct: 25 MHLSGLMFDAGNTYWGMTSTSSGWQSTSDWRRCETSIRRDDVLPTKSTGKRTFYVAHDDGSD----NESDADPPREAS 98
BLAST of Cotton_D_gene_10009039 vs. ExPASy TrEMBL
Match: A0A2P5YXM5_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA00245 PE=4 SV=1) HSP 1 Score: 63.929 bits (154), Expect = 3.878e-10 Identity = 34/73 (46.58%), Postives = 45/73 (61.64%), Query Frame = 0 Query: 1 MNFGQSMFNVGNTYWRIIATSNDWQSASDSRLFDNYTRRDDVLLTMSTGEETSNTTDVGGSENEDGNESDADP 73 M+ G S F++GN YW + +TS+ WQS SD ++ RRDDVLL ST E TS D GGS +E +S +P Sbjct: 76 MHLGSSKFDIGNIYWGMTSTSSGWQSTSDWGHYETSRRRDDVLLMTSTSEGTSFVADDGGSNDESDVDSPREP 148
BLAST of Cotton_D_gene_10009039 vs. ExPASy TrEMBL
Match: A0A2P5YN02_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA03616 PE=4 SV=1) HSP 1 Score: 59.6918 bits (143), Expect = 1.235e-8 Identity = 33/82 (40.24%), Postives = 47/82 (57.32%), Query Frame = 0 Query: 1 MNFGQSMFNVGNTYWRIIATSNDWQSASDSRLFDNYTRRDDVLLTMSTGEETSNTTDVGGSENEDGNESDADPVQKISANSS 82 M+ SMF+ NTYW + TS+ WQS S+ R + + RRDDVL T T E T GS+ N+SDADP +++ + + Sbjct: 52 MHLSGSMFDARNTYWGMTLTSSGWQSTSNWRRCETFIRRDDVLPTTPTSEGTFYVAYDDGSD----NKSDADPPREVGLDGA 129
BLAST of Cotton_D_gene_10009039 vs. ExPASy TrEMBL
Match: A0A2P5VY95_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA36892 PE=4 SV=1) HSP 1 Score: 56.9954 bits (136), Expect = 1.261e-7 Identity = 40/74 (54.05%), Postives = 49/74 (66.22%), Query Frame = 0 Query: 7 MFNVGNTYWRIIATSNDWQSASDSRLFDNYTRRDDVLLTMSTGEETSNTTDVGGSENEDGNESDADPVQKISAN 80 MFN NTY + +TS+ WQS S DNYTR+DDVL ST E TSNT DVGG +NE+G ESD + + + S N Sbjct: 1 MFNARNTYRGMTSTSSSWQSTSGFGHSDNYTRKDDVLPMTSTDEGTSNTADVGGVKNEEGIESDVNQIWECSVN 74
BLAST of Cotton_D_gene_10009039 vs. NCBI nr
Match: gi|1347723401|gb|PPS19331.1| (hypothetical protein GOBAR_AA01246 [Gossypium barbadense]) HSP 1 Score: 70.0922 bits (170), Expect = 4.082e-12 Identity = 37/82 (45.12%), Postives = 49/82 (59.76%), Query Frame = 0 Query: 1 MNFGQSMFNVGNTYWRIIATSNDWQSASDSRLFDNYTRRDDVLLTMSTGEETSNTTDVGGSENEDGNESDADPVQKISANSS 82 M+ G SMF+ GNTYW I + + WQS S ++ RRDDVL STGE TS TD GG + +ESD DP Q++ + + Sbjct: 104 MHLGGSMFDAGNTYWEITSIYSAWQSTSSWGRYEMPRRRDDVLPMTSTGEGTSYITDDGGLD----DESDVDPPQELGRDGT 181
BLAST of Cotton_D_gene_10009039 vs. NCBI nr
Match: gi|1347719639|gb|PPS15885.1| (hypothetical protein GOBAR_AA04697 [Gossypium barbadense]) HSP 1 Score: 63.929 bits (154), Expect = 3.096e-11 Identity = 31/50 (62.00%), Postives = 38/50 (76.00%), Query Frame = 0 Query: 28 SDSRLFDNYTRRDDVLLTMSTGEETSNTTDVGGSENEDGNESDADPVQKI 77 +D + FD+YTRRDDVL T S E TSN DVG SEN +G ESDADP+Q++ Sbjct: 16 TDFKHFDDYTRRDDVLPTTSIDEGTSNKIDVGESENNEGTESDADPIQEV 65
BLAST of Cotton_D_gene_10009039 vs. NCBI nr
Match: gi|1347720929|gb|PPS17051.1| (hypothetical protein GOBAR_AA03538 [Gossypium barbadense]) HSP 1 Score: 65.855 bits (159), Expect = 1.033e-10 Identity = 37/82 (45.12%), Postives = 47/82 (57.32%), Query Frame = 0 Query: 1 MNFGQSMFNVGNTYWRIIATSNDWQSASDSRLFDNYTRRDDVLLTMSTGEETSNTTDVGGSENEDGNESDADPVQKISANSS 82 M+ G SMF+ GNTYW T + WQS S+ ++ RRDDVL STGE TS D G E +ESD DP Q+ S + + Sbjct: 104 MHLGGSMFDAGNTYWGTTLTYSAWQSTSNWGCYETPIRRDDVLPMTSTGEGTSYVADDG----ELDDESDVDPPQEPSRDGT 181
BLAST of Cotton_D_gene_10009039 vs. NCBI nr
Match: gi|1347716342|gb|PPS12913.1| (hypothetical protein GOBAR_AA07723 [Gossypium barbadense]) HSP 1 Score: 65.855 bits (159), Expect = 1.215e-10 Identity = 37/78 (47.44%), Postives = 47/78 (60.26%), Query Frame = 0 Query: 1 MNFGQSMFNVGNTYWRIIATSNDWQSASDSRLFDNYTRRDDVLLTMSTGEETSNTTDVGGSENEDGNESDADPVQKIS 78 M+ SMF+VGNTYW + +TS+ WQS SD R + RR DVL T ST E T GS+ +ESDADP Q+ + Sbjct: 63 MHLSGSMFDVGNTYWGMTSTSSGWQSTSDWRRCETSIRRGDVLPTTSTSEGTLYIAHDDGSD----DESDADPPQEAT 136
BLAST of Cotton_D_gene_10009039 vs. NCBI nr
Match: gi|1050577108|ref|XP_017609549.1| (PREDICTED: uncharacterized protein LOC108455510 [Gossypium arboreum]) HSP 1 Score: 65.0846 bits (157), Expect = 1.795e-10 Identity = 36/81 (44.44%), Postives = 49/81 (60.49%), Query Frame = 0 Query: 1 MNFGQSMFNVGNTYWRIIATSNDWQSASDSRLFDNYTRRDDVLLTMSTGEETSNTTDVGGSENEDGNESDADPVQKISANS 81 M+ G SMF+ GNTYW + +T + WQS S+ ++ RRDDVLL STGE T D G + +ESD DP ++ S +S Sbjct: 16 MHLGGSMFDAGNTYWGMTSTYSAWQSTSNWGRYETLRRRDDVLLMTSTGEGTLYVADNGRLD----DESDVDPPREPSRDS 92
BLAST of Cotton_D_gene_10009039 vs. NCBI nr
Match: gi|1347710721|gb|PPS08168.1| (hypothetical protein GOBAR_AA12480 [Gossypium barbadense]) HSP 1 Score: 65.0846 bits (157), Expect = 1.835e-10 Identity = 32/53 (60.38%), Postives = 38/53 (71.70%), Query Frame = 0 Query: 1 MNFGQSMFNVGNTYWRIIATSNDWQSASDSRLFDNYTRRDDVLLTMSTGEETS 53 M+ SMF+VGNTYW + +TS+ WQSASD R + TRRDDVL T ST E TS Sbjct: 108 MHLSGSMFDVGNTYWGMTSTSSGWQSASDWRCCETSTRRDDVLPTTSTSEGTS 160
BLAST of Cotton_D_gene_10009039 vs. NCBI nr
Match: gi|1347684448|gb|PPR87066.1| (hypothetical protein GOBAR_AA33626 [Gossypium barbadense]) HSP 1 Score: 64.6994 bits (156), Expect = 2.716e-10 Identity = 36/73 (49.32%), Postives = 44/73 (60.27%), Query Frame = 0 Query: 1 MNFGQSMFNVGNTYWRIIATSNDWQSASDSRLFDNYTRRDDVLLTMSTGEETSNTTDVGGSENEDGNESDADP 73 M+ SMF+ GNTYW + + ++ WQS SD R + RRDDVL T STGE T GS+ NESDADP Sbjct: 1 MHLSWSMFDAGNTYWGMTSINSGWQSTSDWRRCETSIRRDDVLPTTSTGEGTFYVAHDDGSD----NESDADP 69
BLAST of Cotton_D_gene_10009039 vs. NCBI nr
Match: gi|1347724451|gb|PPS20313.1| (hypothetical protein GOBAR_AA00267 [Gossypium barbadense]) HSP 1 Score: 64.3142 bits (155), Expect = 4.304e-10 Identity = 37/78 (47.44%), Postives = 47/78 (60.26%), Query Frame = 0 Query: 1 MNFGQSMFNVGNTYWRIIATSNDWQSASDSRLFDNYTRRDDVLLTMSTGEETSNTTDVGGSENEDGNESDADPVQKIS 78 M+ MF+ GNTYW + +TS+ WQS SD R + RRDDVL T STG+ T GS+ NESDADP ++ S Sbjct: 25 MHLSGLMFDAGNTYWGMTSTSSGWQSTSDWRRCETSIRRDDVLPTKSTGKRTFYVAHDDGSD----NESDADPPREAS 98
BLAST of Cotton_D_gene_10009039 vs. NCBI nr
Match: gi|1347724496|gb|PPS20356.1| (hypothetical protein GOBAR_AA00245 [Gossypium barbadense]) HSP 1 Score: 63.929 bits (154), Expect = 4.617e-10 Identity = 34/73 (46.58%), Postives = 45/73 (61.64%), Query Frame = 0 Query: 1 MNFGQSMFNVGNTYWRIIATSNDWQSASDSRLFDNYTRRDDVLLTMSTGEETSNTTDVGGSENEDGNESDADP 73 M+ G S F++GN YW + +TS+ WQS SD ++ RRDDVLL ST E TS D GGS +E +S +P Sbjct: 76 MHLGSSKFDIGNIYWGMTSTSSGWQSTSDWGHYETSRRRDDVLLMTSTSEGTSFVADDGGSNDESDVDSPREP 148 The following BLAST results are available for this feature:
BLAST of Cotton_D_gene_10009039 vs. ExPASy Swiss-Prot
Analysis Date: 2019-06-28 (BLASTx of BGI-CGP D genome v1.0 vs UniProt Swiss-Prot) Total hits: 0
BLAST of Cotton_D_gene_10009039 vs. TAIR10
Analysis Date: 2019-06-26 (BLASTx of BGI-CGP D genome v1.0 vs Araport11) Total hits: 0
BLAST of Cotton_D_gene_10009039 vs. ExPASy TrEMBL
Analysis Date: 2019-06-26 (BLASTx of BGI-CGP D genome v1.0 vs Uniprot TrEMBL) Total hits: 10
BLAST of Cotton_D_gene_10009039 vs. NCBI nr
Analysis Date: 2019-06-28 (BLASTx of BGI-CGP D genome v1.0 vs NCBI nr) Total hits: 9
Sequences
The
following sequences are available for this feature:
mRNA sequence >Cotton_D_gene_10009039-BGI-CGP_v1.0 ID=Cotton_D_gene_10009039-BGI-CGP_v1.0; Name=Cotton_D_gene_10009039; organism=Gossypium raimondii; type=mRNA; length=249bpback to top protein sequence of Cotton_D_gene_10009039 >Cotton_D_gene_10009039-BGI-CGP_v1.0 ID=Cotton_D_gene_10009039-BGI-CGP_v1.0; Name=Cotton_D_gene_10009039; organism=Gossypium raimondii; type=polypeptide; length=82bpback to top mRNA from alignment at scaffold321:52725..52973- Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.>Cotton_D_gene_10009039-BGI-CGP_v1.0 ID=Cotton_D_gene_10009039-BGI-CGP_v1.0; Name=Cotton_D_gene_10009039; organism=Gossypium raimondii; type=mRNA; length=249bp; location=Sequence derived from: scaffold321:52725..52973- (Gossypium raimondiiback to top Coding sequence (CDS) from alignment at scaffold321:52725..52973- >Cotton_D_gene_10009039-BGI-CGP_v1.0 ID=Cotton_D_gene_10009039-BGI-CGP_v1.0; Name=Cotton_D_gene_10009039; organism=Gossypium raimondii; type=CDS; length=249bp; location=Sequence derived from: scaffold321:52725..52973- (Gossypium raimondiiback to top |