g.barbadense_cottongen_reftransV1_0098082, g.barbadense_cottongen_reftransV1_0098082 (contig) Gossypium barbadense
Overview
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0098082 vs. ExPASy TrEMBL
Match: Q9M9T1_ARATH (F14L17.7 protein OS=Arabidopsis thaliana GN=F14L17.7 PE=4 SV=1) HSP 1 Score: 157.918 bits (398), Expect = 1.839e-39 Identity = 88/120 (73.33%), Postives = 104/120 (86.67%), Query Frame = 1 Query: 280 KRAYXXXXXXXXXXXXXXSKPVEETYASIGAKHGLKLNSAEIKKGFKRAFAAPWPDKLRYEGDGKPFWKLVVSEATGCSNDDYFEEVYEHYGNGYAWRLPDGASETIWLLKNAGGHIHQV 639 KRAYDGLLLDA GTLLQLSKPV ETYAS+G K+GLK AEIK+GFKR F+APWP+KLRY+GDG+PFWKLVVSEATGCS++DYFE+VY++Y NG AW LP+GA ET+ LLK+AG + V Sbjct: 39 KRAYDGLLLDAGGTLLQLSKPVHETYASLGQKYGLKTTPAEIKEGFKRVFSAPWPEKLRYQGDGRPFWKLVVSEATGCSDNDYFEDVYQYYANGEAWHLPEGAYETMSLLKDAGVKMAVV 158
BLAST of g.barbadense_cottongen_reftransV1_0098082 vs. ExPASy TrEMBL
Match: Q84WA5_ARATH (Putative uncharacterized protein At1g14310 (Fragment) OS=Arabidopsis thaliana GN=At1g14310 PE=2 SV=1) HSP 1 Score: 157.532 bits (397), Expect = 2.016e-39 Identity = 88/120 (73.33%), Postives = 104/120 (86.67%), Query Frame = 1 Query: 280 KRAYXXXXXXXXXXXXXXSKPVEETYASIGAKHGLKLNSAEIKKGFKRAFAAPWPDKLRYEGDGKPFWKLVVSEATGCSNDDYFEEVYEHYGNGYAWRLPDGASETIWLLKNAGGHIHQV 639 KRAYDGLLLDA GTLLQLSKPV ETYAS+G K+GLK AEIK+GFKR F+APWP+KLRY+GDG+PFWKLVVSEATGCS++DYFE+VY++Y NG AW LP+GA ET+ LLK+AG + V Sbjct: 35 KRAYDGLLLDAGGTLLQLSKPVHETYASLGQKYGLKTTPAEIKEGFKRVFSAPWPEKLRYQGDGRPFWKLVVSEATGCSDNDYFEDVYQYYANGEAWHLPEGAYETMSLLKDAGVKMAVV 154
BLAST of g.barbadense_cottongen_reftransV1_0098082 vs. ExPASy TrEMBL
Match: U5G434_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s10400g PE=4 SV=1) HSP 1 Score: 157.918 bits (398), Expect = 2.045e-39 Identity = 87/120 (72.50%), Postives = 105/120 (87.50%), Query Frame = 1 Query: 280 KRAYXXXXXXXXXXXXXXSKPVEETYASIGAKHGLKLNSAEIKKGFKRAFAAPWPDKLRYEGDGKPFWKLVVSEATGCSNDDYFEEVYEHYGNGYAWRLPDGASETIWLLKNAGGHIHQV 639 K+AYD LLLDA GTLLQL++PVEETYASIG K+GL +SA+IK+GFKRAFAAPWP+KLRY+GDG+PFWKLVVSEATG +N+DYFEEVY++Y NG AW LPDGA E ++LLK+AG + V Sbjct: 43 KKAYDALLLDAGGTLLQLTRPVEETYASIGRKYGLTASSADIKQGFKRAFAAPWPEKLRYQGDGRPFWKLVVSEATGSTNNDYFEEVYKYYANGEAWYLPDGAYEALYLLKDAGVKVVVV 162
BLAST of g.barbadense_cottongen_reftransV1_0098082 vs. ExPASy TrEMBL
Match: B9HVA5_POPTR (Haloacid dehalogenase-like hydrolase family protein OS=Populus trichocarpa GN=POPTR_0010s10400g PE=4 SV=2) HSP 1 Score: 157.532 bits (397), Expect = 2.108e-39 Identity = 87/120 (72.50%), Postives = 105/120 (87.50%), Query Frame = 1 Query: 280 KRAYXXXXXXXXXXXXXXSKPVEETYASIGAKHGLKLNSAEIKKGFKRAFAAPWPDKLRYEGDGKPFWKLVVSEATGCSNDDYFEEVYEHYGNGYAWRLPDGASETIWLLKNAGGHIHQV 639 K+AYD LLLDA GTLLQL++PVEETYASIG K+GL +SA+IK+GFKRAFAAPWP+KLRY+GDG+PFWKLVVSEATG +N+DYFEEVY++Y NG AW LPDGA E ++LLK+AG + V Sbjct: 40 KKAYDALLLDAGGTLLQLTRPVEETYASIGRKYGLTASSADIKQGFKRAFAAPWPEKLRYQGDGRPFWKLVVSEATGSTNNDYFEEVYKYYANGEAWYLPDGAYEALYLLKDAGVKVVVV 159
BLAST of g.barbadense_cottongen_reftransV1_0098082 vs. ExPASy TrEMBL
Match: V4TF12_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032480mg PE=4 SV=1) HSP 1 Score: 157.532 bits (397), Expect = 2.544e-39 Identity = 85/120 (70.83%), Postives = 103/120 (85.83%), Query Frame = 1 Query: 280 KRAYXXXXXXXXXXXXXXSKPVEETYASIGAKHGLKLNSAEIKKGFKRAFAAPWPDKLRYEGDGKPFWKLVVSEATGCSNDDYFEEVYEHYGNGYAWRLPDGASETIWLLKNAGGHIHQV 639 K+AYD LLLDA GTLLQL++PVEETYASI K+GL ++SA+IKKGF++AFAAPWP+KLRYEGDG+PFW+LVVSEATGC+NDDYFEEVYE+Y G W LP GA ++I LLK+AG + V Sbjct: 47 KKAYDALLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATGCTNDDYFEEVYEYYAKGEVWHLPHGAYQSILLLKDAGVKVAVV 166 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0098082 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 0
BLAST of g.barbadense_cottongen_reftransV1_0098082 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0098082 ID=g.barbadense_cottongen_reftransV1_0098082; Name=g.barbadense_cottongen_reftransV1_0098082; organism=Gossypium barbadense; type=contig; length=2708bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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