g.barbadense_cottongen_reftransV1_0098082, g.barbadense_cottongen_reftransV1_0098082 (contig) Gossypium barbadense
Overview
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0098082 vs. ExPASy TrEMBL
Match: D7TNA0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0026g02250 PE=4 SV=1) HSP 1 Score: 162.155 bits (409), Expect = 7.377e-41 Identity = 90/119 (75.63%), Postives = 105/119 (88.24%), Query Frame = 1 Query: 283 RAYXXXXXXXXXXXXXXSKPVEETYASIGAKHGLKLNSAEIKKGFKRAFAAPWPDKLRYEGDGKPFWKLVVSEATGCSNDDYFEEVYEHYGNGYAWRLPDGASETIWLLKNAGGHIHQV 639 RAYDGLLLDA GTLLQL+KPVE TYA IG K+GL +SAEIK+GF+RAFAAPWP+KLRY+GDG+PFWKLVVSEATGC+N+DYFEEVYE+Y NG AW LP GASET++LLK+AG + V Sbjct: 44 RAYDGLLLDAGGTLLQLAKPVESTYADIGRKYGLTASSAEIKQGFRRAFAAPWPEKLRYQGDGRPFWKLVVSEATGCANNDYFEEVYEYYANGDAWHLPTGASETMFLLKDAGVKLAVV 162
BLAST of g.barbadense_cottongen_reftransV1_0098082 vs. ExPASy TrEMBL
Match: A0A067H5R3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g024886mg PE=4 SV=1) HSP 1 Score: 160.229 bits (404), Expect = 1.616e-40 Identity = 96/166 (57.83%), Postives = 118/166 (71.08%), Query Frame = 1 Query: 175 MESCFTKYWHSKTLF-----------TXXXXXXXXXXXXXXXXXXXKRAYXXXXXXXXXXXXXXSKPVEETYASIGAKHGLKLNSAEIKKGFKRAFAAPWPDKLRYEGDGKPFWKLVVSEATGCSNDDYFEEVYEHYGNGYAWRLPDGASETIWLLKNAGGHIHQV 639 ME+C +K H +L S S V SVK+AYD +LLDA GTLLQL++PVEETYASI K+GL ++SA+IKKGF++AFAAPWP+KLRYEGDG+PFW+LVVSEATGC+NDDYFEEVYE+Y G AW LP GA ++I LLK+AG + V Sbjct: 1 MEACISKCCHGNSLLKALKMKPLRFNISNRLRCSSMPLHSGVGKSVKKAYDAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATGCTNDDYFEEVYEYYAKGEAWHLPHGAYQSILLLKDAGVKVAVV 166
BLAST of g.barbadense_cottongen_reftransV1_0098082 vs. ExPASy TrEMBL
Match: K4ATS6_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc01g010830.2 PE=4 SV=1) HSP 1 Score: 152.14 bits (383), Expect = 1.715e-40 Identity = 85/120 (70.83%), Postives = 100/120 (83.33%), Query Frame = 1 Query: 280 KRAYXXXXXXXXXXXXXXSKPVEETYASIGAKHGLKLNSAEIKKGFKRAFAAPWPDKLRYEGDGKPFWKLVVSEATGCSNDDYFEEVYEHYGNGYAWRLPDGASETIWLLKNAGGHIHQV 639 +RAYDGLLLDAA TLLQLSKPVEETYA IG K+GL + AEIK+GFKRAF+APWP+ LRY+ DG+PFWKLVVSEATGCS+D YFEEVY+HY +G AW LP GA +TI +LK +G + V Sbjct: 44 RRAYDGLLLDAANTLLQLSKPVEETYAGIGKKYGLTTSPAEIKQGFKRAFSAPWPENLRYQDDGRPFWKLVVSEATGCSDDTYFEEVYQHYASGEAWHLPAGAYDTILILKRSGVKLAVV 163 HSP 2 Score: 44.2838 bits (103), Expect = 1.715e-40 Identity = 19/24 (79.17%), Postives = 24/24 (100.00%), Query Frame = 3 Query: 741 VKVAVVSNFDTRLRKVLKELNVID 812 VK+AVVSNFDTRLRK+LK+LN++D Sbjct: 158 VKLAVVSNFDTRLRKILKDLNMLD 181
BLAST of g.barbadense_cottongen_reftransV1_0098082 vs. ExPASy TrEMBL
Match: D7KBI9_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_312429 PE=4 SV=1) HSP 1 Score: 160.614 bits (405), Expect = 2.067e-40 Identity = 90/120 (75.00%), Postives = 105/120 (87.50%), Query Frame = 1 Query: 280 KRAYXXXXXXXXXXXXXXSKPVEETYASIGAKHGLKLNSAEIKKGFKRAFAAPWPDKLRYEGDGKPFWKLVVSEATGCSNDDYFEEVYEHYGNGYAWRLPDGASETIWLLKNAGGHIHQV 639 KRAYDGLLLDA GTLLQLSKPV ETYAS+G K+GLK AEIK+GFKRAF+APWP+KLRY+GDG+PFWKLVVSEATGCS++DYFEEVY++Y NG AW LP+GA ET+ LLK+AG + V Sbjct: 39 KRAYDGLLLDAGGTLLQLSKPVHETYASLGQKYGLKTTPAEIKQGFKRAFSAPWPEKLRYQGDGRPFWKLVVSEATGCSDNDYFEEVYQYYANGEAWHLPEGAYETMSLLKDAGVKMAVV 158
BLAST of g.barbadense_cottongen_reftransV1_0098082 vs. ExPASy TrEMBL
Match: A0A0B0NE27_GOSAR (Haloacid dehalogenase-like hydrolase domain-containing protein 3 OS=Gossypium arboreum GN=F383_06343 PE=4 SV=1) HSP 1 Score: 158.688 bits (400), Expect = 3.858e-40 Identity = 119/155 (76.77%), Postives = 121/155 (78.06%), Query Frame = 1 Query: 175 MESCFTKYWHSKTLFTXXXXXXXXXXXXXXXXXXXKRAYXXXXXXXXXXXXXXSKPVEETYASIGAKHGLKLNSAEIKKGFKRAFAAPWPDKLRYEGDGKPFWKLVVSEATGCSNDDYFEEVYEHYGNGYAWRLPDGASETIWLLKNAGGHIHQV 639 MESCFTK WHSK LFTSLY+LRRSSISIHSVRNSVKRAYDGLLLDAAGTLLQLSKPVEETYASIGAKHGLKLNSAEIKKGFKRAFAAPWPDKLR YEHYGNGYAWRLPDGASETIWLLKNAG + V Sbjct: 1 MESCFTKCWHSKALFTSLYALRRSSISIHSVRNSVKRAYDGLLLDAAGTLLQLSKPVEETYASIGAKHGLKLNSAEIKKGFKRAFAAPWPDKLR----------------------------YEHYGNGYAWRLPDGASETIWLLKNAGVKVAVV 127 HSP 2 Score: 70.8626 bits (172), Expect = 3.637e-10 Identity = 34/39 (87.18%), Postives = 36/39 (92.31%), Query Frame = 3 Query: 2067 KIFGIVVDQIDVEADKVVHVGDDLKADKVGANAVGIDCW 2183 +IF +DQIDVEADKVVHVGDDLKADKVGANAVGIDCW Sbjct: 164 RIFKAALDQIDVEADKVVHVGDDLKADKVGANAVGIDCW 202
BLAST of g.barbadense_cottongen_reftransV1_0098082 vs. ExPASy TrEMBL
Match: A0A067GW36_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g024886mg PE=4 SV=1) HSP 1 Score: 159.844 bits (403), Expect = 4.760e-40 Identity = 96/166 (57.83%), Postives = 118/166 (71.08%), Query Frame = 1 Query: 175 MESCFTKYWHSKTLF-----------TXXXXXXXXXXXXXXXXXXXKRAYXXXXXXXXXXXXXXSKPVEETYASIGAKHGLKLNSAEIKKGFKRAFAAPWPDKLRYEGDGKPFWKLVVSEATGCSNDDYFEEVYEHYGNGYAWRLPDGASETIWLLKNAGGHIHQV 639 ME+C +K H +L S S V SVK+AYD +LLDA GTLLQL++PVEETYASI K+GL ++SA+IKKGF++AFAAPWP+KLRYEGDG+PFW+LVVSEATGC+NDDYFEEVYE+Y G AW LP GA ++I LLK+AG + V Sbjct: 1 MEACISKCCHGNSLLKALKMKPLRFNISNRLRCSSMPLHSGVGKSVKKAYDAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATGCTNDDYFEEVYEYYAKGEAWHLPHGAYQSILLLKDAGVKVAVV 166
BLAST of g.barbadense_cottongen_reftransV1_0098082 vs. ExPASy TrEMBL
Match: R0I461_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10010081mg PE=4 SV=1) HSP 1 Score: 159.073 bits (401), Expect = 6.693e-40 Identity = 89/120 (74.17%), Postives = 104/120 (86.67%), Query Frame = 1 Query: 280 KRAYXXXXXXXXXXXXXXSKPVEETYASIGAKHGLKLNSAEIKKGFKRAFAAPWPDKLRYEGDGKPFWKLVVSEATGCSNDDYFEEVYEHYGNGYAWRLPDGASETIWLLKNAGGHIHQV 639 KRAYDGLLLDA GTLLQLSKPV ETYAS+G K+G+K AEIK+GFKR FAAPWP+KLRY+GDG+PFWKLVVSEATGCS++DYFEEVY++Y NG AW LP+GA ET+ LLK+AG + V Sbjct: 38 KRAYDGLLLDAGGTLLQLSKPVHETYASLGQKYGVKTTPAEIKQGFKRVFAAPWPEKLRYQGDGRPFWKLVVSEATGCSDNDYFEEVYQYYANGEAWHLPEGAYETMSLLKDAGVKMAVV 157
BLAST of g.barbadense_cottongen_reftransV1_0098082 vs. ExPASy TrEMBL
Match: A0A067LAR8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15591 PE=4 SV=1) HSP 1 Score: 159.073 bits (401), Expect = 8.609e-40 Identity = 74/100 (74.00%), Postives = 86/100 (86.00%), Query Frame = 1 Query: 340 PVEETYASIGAKHGLKLNSAEIKKGFKRAFAAPWPDKLRYEGDGKPFWKLVVSEATGCSNDDYFEEVYEHYGNGYAWRLPDGASETIWLLKNAGGHIHQV 639 PVEETYASIG K+G+ +SAEIKKGFKRAF+APWP+KLRY+GDG+PFWKLVVSEATGCSNDDYFEEVY++Y NG AW LP+GA ET+ LK AG + V Sbjct: 66 PVEETYASIGRKYGMSTSSAEIKKGFKRAFSAPWPEKLRYQGDGRPFWKLVVSEATGCSNDDYFEEVYKYYANGNAWHLPNGAYETLVFLKEAGVKLAVV 165 HSP 2 Score: 60.8474 bits (146), Expect = 9.718e-7 Identity = 28/40 (70.00%), Postives = 32/40 (80.00%), Query Frame = 3 Query: 2064 QKIFGIVVDQIDVEADKVVHVGDDLKADKVGANAVGIDCW 2183 KIF +DQ+ VEA + VHVGDDLKADK GANA+GIDCW Sbjct: 201 PKIFKAALDQVCVEASRAVHVGDDLKADKDGANAIGIDCW 240
BLAST of g.barbadense_cottongen_reftransV1_0098082 vs. ExPASy TrEMBL
Match: V4KZB4_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10008537mg PE=4 SV=1) HSP 1 Score: 158.688 bits (400), Expect = 8.875e-40 Identity = 88/120 (73.33%), Postives = 105/120 (87.50%), Query Frame = 1 Query: 280 KRAYXXXXXXXXXXXXXXSKPVEETYASIGAKHGLKLNSAEIKKGFKRAFAAPWPDKLRYEGDGKPFWKLVVSEATGCSNDDYFEEVYEHYGNGYAWRLPDGASETIWLLKNAGGHIHQV 639 KRAYDGLLLDA GTLLQLSKPV ETYAS+G K+GL+ AEIK+GFKRAF+APWP+KLRY+GDG+PFWKLVVSEATGCS++DYFEEVY++Y NG AW LP+GA ET+ LLK++G + V Sbjct: 41 KRAYDGLLLDAGGTLLQLSKPVHETYASLGQKYGLRTTPAEIKQGFKRAFSAPWPEKLRYQGDGRPFWKLVVSEATGCSDNDYFEEVYQYYANGEAWHLPEGAYETMSLLKDSGVKMAVV 160
BLAST of g.barbadense_cottongen_reftransV1_0098082 vs. ExPASy TrEMBL
Match: Q6AWS8_ARATH (At1g14310 OS=Arabidopsis thaliana PE=2 SV=1) HSP 1 Score: 157.532 bits (397), Expect = 1.488e-39 Identity = 88/120 (73.33%), Postives = 104/120 (86.67%), Query Frame = 1 Query: 280 KRAYXXXXXXXXXXXXXXSKPVEETYASIGAKHGLKLNSAEIKKGFKRAFAAPWPDKLRYEGDGKPFWKLVVSEATGCSNDDYFEEVYEHYGNGYAWRLPDGASETIWLLKNAGGHIHQV 639 KRAYDGLLLDA GTLLQLSKPV ETYAS+G K+GLK AEIK+GFKR F+APWP+KLRY+GDG+PFWKLVVSEATGCS++DYFE+VY++Y NG AW LP+GA ET+ LLK+AG + V Sbjct: 23 KRAYDGLLLDAGGTLLQLSKPVHETYASLGQKYGLKTTPAEIKEGFKRVFSAPWPEKLRYQGDGRPFWKLVVSEATGCSDNDYFEDVYQYYANGEAWHLPEGAYETMSLLKDAGVKMAVV 142 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0098082 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 0
BLAST of g.barbadense_cottongen_reftransV1_0098082 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0098082 ID=g.barbadense_cottongen_reftransV1_0098082; Name=g.barbadense_cottongen_reftransV1_0098082; organism=Gossypium barbadense; type=contig; length=2708bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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