g.barbadense_cottongen_reftransV1_0098079, g.barbadense_cottongen_reftransV1_0098079 (contig) Gossypium barbadense
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0098079 vs. ExPASy TrEMBL
Match: V7BHR9_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G240300g PE=4 SV=1) HSP 1 Score: 425.631 bits (1093), Expect = 8.524e-129 Identity = 262/533 (49.16%), Postives = 332/533 (62.29%), Query Frame = -1 Query: 981 YDKIKFQKVENAGVREESSLRDGIDVSLSPSSFEPDKLIDYMKELAESPYSGGDRIDLVIAKAQLLAFYRLKGYHQLPESQFS--------------EEKTLEVVECATPMDTDGEQKSEASKTRRSYLKRKHNLKDGLYPSKKERSLSELMSETFDSPDGEIGSD-VMGNKPPSSSFGKKRKAIDS-SEDSVMQEGRKTTKGSLSTPHFPKPSFKIGERISRAASQMTGSPSILKSGGDRLHKLDGGCETSATCGYDVPVDNLEDAERKRTDILTEYSSXXXXXXXXXLAACDPMKGYSSLNIIISFFSDFRDSIVL------DRLSRDKAVGQRKKSPNSIIGFSETFEFEDMSDTYWTNRIVQNGSE---------EQPSVGTDRGQYQFVPVELDKPIQKVRK--SRKRYSDTSHDLTAQKPPGYVDERAPAEIVMSFPEINSVPSETKLNKMLKHFGPLKESETEVDCETSRARVVFRRSSDAEVAYNSARKFNIFGPVSVTYQLNYTISESFKASLYAPILAEENPF 2480 YD IKFQ VEN G+R E S+R G+D SL+ S+F PDKL+ YMK L+E P G DR++L IAKAQLLAFYR KGY LPE Q+ E K ++ A+ DG S K + S KRK+ LKD + +KKERS+SELM T DSPDG+ D + + S KKR+ +D +D Q+GRKT + + KPSF IG+RI R AS++TGSPS++KS GDR K DG E + G+DV D ED +R + TEYSSLD+LL L L A +P Y LN I+SFFSDFRDSI + D + +RK+SP I G ETFEFEDMSDTYWT+R++ N SE QP+ + +Q V E KP+ R+ SRK+YS+++H QKP GY+DE APAE+VM+F E+ SVPSET LN+M + FGPLKE+ETEVD +SRARVVF++ SDAEVA +SA+KFNIFGP+ V YQLNYT++ FKAS A E F Sbjct: 593 YDSIKFQTVENTGIRPERSVRHGMDESLNASTFSPDKLVAYMKTLSELPTGGFDRLELGIAKAQLLAFYRFKGYSCLPELQYCGGFDDDMDTLVHGDENKAIDY--SASLSKNDGRAGSGNLKNQSSRFKRKYTLKDTMQETKKERSMSELMGGTPDSPDGDYWFDEKVNDNLVSPGHSKKRRTVDHYGDDFGKQDGRKTISVA-KVSNTTKPSFLIGDRIRRVASKLTGSPSVVKSYGDRSQKTDGSTEGISGNGFDVSFD--ED-QRSSMVVTTEYSSLDDLLSSLQLVAQEPFGYYRFLNPIVSFFSDFRDSITMAGDAVKDIFCTENVGTKRKQSP--IAGSPETFEFEDMSDTYWTDRVIDNVSEVQPAQLSQPTQPARKNRKKDHQLVSAEPGKPVPVGRRPYSRKQYSNSNHIEAPQKPAGYIDENAPAELVMNFAELGSVPSETNLNRMFRRFGPLKEAETEVDTVSSRARVVFKKCSDAEVACSSAQKFNIFGPILVNYQLNYTLNALFKASSVATTQDHEMHF 1117
BLAST of g.barbadense_cottongen_reftransV1_0098079 vs. ExPASy TrEMBL
Match: A0A059BHK2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G02799 PE=4 SV=1) HSP 1 Score: 420.624 bits (1080), Expect = 1.935e-126 Identity = 269/523 (51.43%), Postives = 332/523 (63.48%), Query Frame = -1 Query: 1017 YDKIKFQKVENAGVREESSLRDGIDVSLSPSSFEPDKLIDYMKELAESPYSGGDRIDLVIAKAQLLAFYRLKGYHQLPESQFSE---EKTLEVV--ECATPMDTDGEQKSEASKTR-----RSYLK--------RKHNLKDGLYPSKKERSLSELMSETFDSPDGEIGSDVMGNKPP---SSSFGKKRKAIDSSEDSVMQEGRKT--TKGSLSTPHFPKPSFKIGERISRAASQMTGSPSILKSGGDRLHKLDGGCETSATCGYDVPVDNLEDAERKRTDILTEYSSXXXXXXXXXLAACDPMKGYSSLNIIISFFSDFRDSIV------LDRLSRDKAVGQRKKSPNSIIGFSETFEFEDMSDTYWTNRIVQNGSEEQPSVGTDRGQYQFVPVELDKPIQKVRK------SRKRYSDTSHDLTAQKPPGYVDERAPAEIVMSFPEINSVPSETKLNKMLKHFGPLKESETEVDCETSRARVVFRRSSDAEVAYNSARKFNIFGPVSVTYQLNYTISESFKAS 2480 YDKIK Q VEN G+RE+ R+G+D S S SSF+PDK++DYM+ LA+ SGGDR+DLVIAKAQLLAFYR KGY++LPE QF E E E + + + + D E + S+ + R LK RKHNLKD KKERSL+ELM ++ D PD E +D+ G S S GKKRKA D S DS + +GRK +S FPKPSFKIGE I R ASQ+TG+P I+KS DR DG ET+ DAE+ RT I TEYSSLD LL QL+ AA DPM+ YS LN++I FFSDFR+S+ L R+S +RKKS ETFEFEDM+D+YWT+R++ NG EEQPS +G Q V VE QKVRK +R+R D S+ L +KPPGYVDE APAE+V+ FP SVPS LNKM K FGPLKESETE+D + +RAR+VF++ SDAEVA+NSA+KFNIFG + V YQLNY++S K S Sbjct: 717 YDKIKVQIVENTGIREQLGFREGVDESTSASSFKPDKILDYMRTLAQCSSSGGDRLDLVIAKAQLLAFYRQKGYNELPELQFCEGLMESDAEALNFDGSIHVGNDMESGTLVSEDKMVSSGRDSLKAPKGSSHRRKHNLKDIADYKKKERSLAELMDDSMDYPDEE--TDLDGKASGTLVSPSSGKKRKARDPSADSNLSDGRKNICVAKVVSAASFPKPSFKIGECIRRVASQLTGAP-IVKS--DRNGAGDG-SETA-------------DAEKGRTTIPTEYSSLDGLLSQLYSAALDPMQEYSFLNVLICFFSDFRNSVASGPDPTLGRVS-----AKRKKS--------ETFEFEDMNDSYWTDRVIGNGFEEQPSDTDWKGDNQLVAVE----TQKVRKVGRRSYTRRRDLDESN-LLEEKPPGYVDENAPAELVLMFPLSASVPSVYSLNKMFKRFGPLKESETELDRDANRARLVFKKCSDAEVAFNSAQKFNIFGSMLVNYQLNYSVSSLVKTS 1202
BLAST of g.barbadense_cottongen_reftransV1_0098079 vs. ExPASy TrEMBL
Match: A0A0A0KQ10_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G175900 PE=4 SV=1) HSP 1 Score: 427.557 bits (1098), Expect = 8.835e-126 Identity = 331/869 (38.09%), Postives = 464/869 (53.39%), Query Frame = -1 Query: 171 YDKIKFQKVENAGVREESSLRDGIDVSLSPSSFEPDKLIDYMKELAESPYSGGDRIDLVIAKAQLLAFYRLKGYHQLPESQFS---------------------EEKTLEVVECATPMDTDGE---QKSEASKTRRSYLKRKHNLKDGLYPSKKERSLSELMSETFDSPDGEIGSDVMGNKPPSSSFGKKRKAIDSSED-SVMQEGRKT-TKGSLSTPHFPKPSFKIGERISRAASQMTGSPSILKSGGDRLHKLDGGCETSATCGYDVPVDNLEDAERKRTDILTEYSSXXXXXXXXXLAACDPMKGYSSLNIIISFFSDFRDSIVLDRL-----SRDKAVGQRKKSPNSIIGFSETFEFEDMSDTYWTNRIVQNGSEEQPSVGTDRGQYQFVPVELDKPIQKVRK-SRKRYSDTSHDLTAQKPPGYVDERAPAEIVMSFPEINSVPSETKLNKMLKHFGPLKESETEVDCETSRARVVFRRSSDAEVAYNSARKFNIFGPVSVTYQLNYTISESFKASLYAPILAEENPFIAS-----------APCGDHAL---IAPSLGEEASFMVSTLG-DETLPIATTFHEE---PWFIASTTGEDTLAIPTTLADGASDVATTMYEKTLPVTTTAGVETMAGATTIVDK----TFT----------------------VATTVGEQSL-PVFTTIDEQTSTAAASLVDEASFSHLTL--SKRTSTL--TATLGDQTSSIATFHPEIPSVPAT-VGEEICTIPTPSGEETCSIP----------PKLDEETTIRPMTL-AEETPSIPRTLGEDAPSVPAAFSEE---APAVTLTFSEGTHTLPGTLDC-ETKTVLTTVYEE--TTIPATLGQE 2480 YD +K Q +ENAG+REESS R G+D S S +SFEP KLI+Y+++LA+ P G DR++LVIAKAQL AFYRLKGY LP+ QF E ++ + A P D + K SY KRKHNLKDGLYP KKE+SL ELM E FD+ DGE SD + S S K+RK ++ D S +GRKT + +S K SFKIG+ I R ASQ+TG+P I KS +R K DG + +A DV + N +DA+R + + EYSSLDELL QL L A DPMK YS LN+I+SFF+DFRDS++L + + ++ G+RK SI+ +TFEFEDMSDTYWT+R++QNG+E Q + YQ V E +K +Q R+ +KR+ +H +TA+K V + +PAE+VM+F E++SVPSE LN M + FGPL+ESETEVD E RARVVF++SSDAE+AY+SA +F+IFGP V YQL+YT S FKAS + +E S + DH + ++ ++ +ST+G E + + H++ P + A GE T D SD+ + M+ + L + ET +G T D+ FT V+ + EQ++ PVF TI E+ + A + E S S L + + T T+ TA LG + + H E +VPAT + E+ + + E+ + P + +E ++P+ +E +P T +D P SEE P + + T GT++ E L T +E + PAT +E Sbjct: 658 YDMVKCQIIENAGIREESSRRYGVDKSASATSFEPAKLIEYIRDLAKFPSDGSDRLELVIAKAQLTAFYRLKGYCGLPQFQFGGLPQFQFCGGLADNELDSLGIEMQSSDFDHHAAPCQDDAQASPSKENVEVRSSSYHKRKHNLKDGLYPKKKEKSLYELMGENFDNIDGENWSDARTSTLVSPSC-KRRKTVEHPIDGSGAPDGRKTISVAKVSGTASLKQSFKIGDCIRRVASQLTGTPPI-KSTCERFQKPDGSFDGNALHESDVFLQNFDDAQRGKVNFPPEYSSLDELLDQLQLVASDPMKEYSFLNVIVSFFTDFRDSLILRQHPGIEEALERNGGKRKAQFTSIVASPQTFEFEDMSDTYWTDRVIQNGTEVQLPRKNRKRDYQLV-AEPEKALQGSRRPYKKRHPAGNHAMTAEKVTSSVYQPSPAELVMNFSEVDSVPSEKTLNNMFRRFGPLRESETEVDREGGRARVVFKKSSDAEIAYSSAGRFSIFGPRLVNYQLSYTPSTLFKASPIPRLQDQEMHLDLSTAQFQEMQLDLSSFHDHEMQLDLSSIHDQDMQLDLSTIGYQEMESVLGSHHDQESKPHYTAH-LGEMQADFSTIQYDRQSDL-SAMHNQELHPVFASNQETQSGQVTSQDQELHHNFTSDQLGEMQADHTLTPPHHDEPPVSASDPEQNMPPVFATIKEEKTQPAITTFQEESQSVLGIIQEQETHTILDTAQLGRMQADLNPTHHERQTVPATSLEHEMQPVTSQEQEDVANTGTTTVHHQQPVPSIPQEQDMQPVVATVQENEMVPVTSTQDHEREPETASEELLGEPVPAIKEGQETQRFLGTMNGHEEDDALGTKEQEAQSVTPATHEEE 1521
BLAST of g.barbadense_cottongen_reftransV1_0098079 vs. ExPASy TrEMBL
Match: A5AFE3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016382 PE=4 SV=1) HSP 1 Score: 422.55 bits (1085), Expect = 2.131e-124 Identity = 267/528 (50.57%), Postives = 338/528 (64.02%), Query Frame = -1 Query: 1002 YDKIKFQKVENAGVREESSLRDGIDVSLSPSSFEPDKLIDYMKELAESPYSGGDRIDLVIAKAQLLAFYRLKGYHQLPESQFS---EEKTLEVV--------ECATPMDTDGEQKSEASKTRRSYLKRKHNLKDGLYPSKKERSLSELMSETFDSPDGEIGSDVMGNKPPSSSFGKKRKAIDS-SEDSVMQEGRKT---TKGSLSTPHFPKPSFKIGERISRAASQMTGSPSILKSGGDRLHKL-DGGCETSATCGYDVPVDNLEDAERKRTDILTEYSSXXXXXXXXXLAACDPMKGYSSLNIIISFFSDFRDSIVLDR------LSRDKAVGQRKKSPNSIIGFSETFEFEDMSDTYWTNRIVQNGSEEQPSV-------GTDRGQYQFVPVELDKPIQKVRKS--RKRYSDTSHDLTAQKPPGYVDERA----PAEIVMSFPEINSVPSETKLNKMLKHFGPLKESETEVDCETSRARVVFRRSSDAEVAYNSARKFNIFGPVSVTYQLNYTISESFKASLYAPI 2480 YD+IK Q VEN G+R ESS RDG+D S + S EPD ++Y+K LA+ P G D+++LVIAKAQLLAF RLKGYH+LPE Q+ +E ++ E M DG+ K + S + KRKHNLKD YP KKERSLSELMS SPD E SD P SS G+KRK +DS DS +Q+ ++ K S ++ P+ SFK+G+ I RAASQ+TGSPSILK G+R K+ DG G DV + + ED +R I EY SLDE+L QL LAA DPMKGYS L+ I+SFFS+FR+SI+L R L+ DK G R+K + IG E FEFEDM+DTYWT+R++QN SEEQP R + QF + +K Q R+S RKRYSD +H+L +KP YVDE+ PAE++++FPE++SVPSE LNKM + FGPLKESETEVD TSRARVVF+R SDAEVA++SA NIFGP V YQLNY+ S +L+ P+ Sbjct: 1359 YDEIKCQIVENTGIRPESSRRDGVDKSATMSLLEPDTFVEYIKALAQFPSGGADQLELVIAKAQLLAFSRLKGYHRLPEFQYCGGLQENDADISCFNEMMEHETDVLMGDDGKFKIQNSSSH----KRKHNLKDSAYPRKKERSLSELMSGMAYSPDDENDSDGKATSKPVSSSGRKRKVVDSFGNDSEVQDRTESIFVAKVSNTSAPSPRQSFKVGDCIRRAASQLTGSPSILKCSGERPQKVVDGSIGKLGGPGSDVSLMSPEDPQRMI--IPMEYPSLDEMLSQLRLAARDPMKGYSFLDTIVSFFSEFRNSILLGRYSGRESLTMDKVAGNRRKKSSQPIGSPEEFEFEDMNDTYWTDRVIQNTSEEQPEQPEQPPRSARKRKEPQFGSTDPEKSPQLGRRSYSRKRYSDGNHELAVEKPANYVDEKERELLPAELILNFPEVDSVPSEMILNKMFRRFGPLKESETEVDRVTSRARVVFKRCSDAEVAFSSAGMINIFGPTHVNYQLNYSPS-----TLFTPL 1875
BLAST of g.barbadense_cottongen_reftransV1_0098079 vs. ExPASy TrEMBL
Match: F6HNK4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0019g03620 PE=4 SV=1) HSP 1 Score: 422.165 bits (1084), Expect = 3.077e-124 Identity = 265/528 (50.19%), Postives = 335/528 (63.45%), Query Frame = -1 Query: 1002 YDKIKFQKVENAGVREESSLRDGIDVSLSPSSFEPDKLIDYMKELAESPYSGGDRIDLVIAKAQLLAFYRLKGYHQLPESQFS---EEKTLEVV--------ECATPMDTDGEQKSEASKTRRSYLKRKHNLKDGLYPSKKERSLSELMSETFDSPDGEIGSDVMGNKPPSSSFGKKRKAIDSSEDSVMQEGRK----TTKGSLSTPHFPKPSFKIGERISRAASQMTGSPSILKSGGDRLHKL-DGGCETSATCGYDVPVDNLEDAERKRTDILTEYSSXXXXXXXXXLAACDPMKGYSSLNIIISFFSDFRDSIVLDR------LSRDKAVGQRKKSPNSIIGFSETFEFEDMSDTYWTNRIVQNGSEEQPSV-------GTDRGQYQFVPVELDKPIQKVRKS--RKRYSDTSHDLTAQKPPGYVDERA----PAEIVMSFPEINSVPSETKLNKMLKHFGPLKESETEVDCETSRARVVFRRSSDAEVAYNSARKFNIFGPVSVTYQLNYTISESFKASLYAPI 2480 YD+IK Q VEN G+R ESS RDG+D S + S EPD ++Y+K LA+ P G D+++LVIAKAQLLAF RLKGYH+LPE Q+ +E ++ E M DG+ K + S + KRKHNLKD YP KKERSLSELMS SPD E SD P SS G+KRK +DS + + + R K S ++ P+ SFK+G+ I RAASQ+TGSPSILK G+R K+ DG G DV + + ED +R I EY SLDE+L QL LAA DPMKGYS L+ I+SFFS+FR+SI+L R L+ DK G R+K + IG E FEFEDM+DTYWT+R++QN SEEQP R + QF + +K Q R+S RKRYSD +H+L +KP YVDE+ PAE++++FPE++SVPSE LNKM + FGPLKESETEVD TSRARVVF+R SDAEVA++SA NIFGP V YQLNY+ S +L+ P+ Sbjct: 1349 YDEIKCQIVENTGIRSESSRRDGVDKSATMSLLEPDTFVEYIKALAQFPSGGADQLELVIAKAQLLAFSRLKGYHRLPEFQYCGGLQENDADISCFNEMMEHETDVLMGDDGKFKIQNSSSH----KRKHNLKDSAYPRKKERSLSELMSGMAYSPDDENDSDGKATSKPVSSSGRKRKVVDSFGNDLEVQDRTESIFVAKVSNTSAPSPRQSFKVGDCIRRAASQLTGSPSILKCSGERPQKVVDGSIGKLGGPGSDVSLMSPEDPQRMI--IPMEYPSLDEMLSQLRLAARDPMKGYSFLDTIVSFFSEFRNSILLGRYSGRESLTMDKVAGNRRKKSSQPIGSPEEFEFEDMNDTYWTDRVIQNTSEEQPEQPEQPPRSARKRKEPQFGSTDPEKSPQLGRRSYSRKRYSDGNHELAVEKPANYVDEKERELLPAELILNFPEVDSVPSEMILNKMFRRFGPLKESETEVDRVTSRARVVFKRCSDAEVAFSSAGMINIFGPTHVNYQLNYSPS-----TLFTPL 1865 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0098079 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 0
BLAST of g.barbadense_cottongen_reftransV1_0098079 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0098079 ID=g.barbadense_cottongen_reftransV1_0098079; Name=g.barbadense_cottongen_reftransV1_0098079; organism=Gossypium barbadense; type=contig; length=2480bpback to top |