g.barbadense_cottongen_reftransV1_0098061, g.barbadense_cottongen_reftransV1_0098061 (contig) Gossypium barbadense

Overview
Nameg.barbadense_cottongen_reftransV1_0098061
Unique Nameg.barbadense_cottongen_reftransV1_0098061
Typecontig
OrganismGossypium barbadense (Sea Island cotton)
Sequence length2999
Homology
BLAST of g.barbadense_cottongen_reftransV1_0098061 vs. ExPASy Swiss-Prot
Match: Y1015_ARATH (Uncharacterized protein At1g01500 OS=Arabidopsis thaliana GN=At1g01500 PE=2 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.775e-64
Identity = 116/190 (61.05%), Postives = 139/190 (73.16%), Query Frame = 2
Query:  377 SVWLEIRLFYVRIAPCVVDNVPDLLTLCHLRREIGVSLEINGSRVPASDSAVLTLRCDRLNRESSEVTYLSTDSVRVTGGFEFEVYEDEKKVLLCGSLERMEGEWS------------MDCYLAAA---AKEPGNSAFFKPKMGVSAPSIEVYIAGCCAGTPVILTKTILGSPKRKGASRLKWMLDAIPE 901
            S WLE+RLFYVRIAPCVV+NVPD LTL H RRE G SLE+NG RVP+S +A L LR DR++RESSEVTY+ST++VRVTG  +FEVY++E  V LCG+L+R+EG W+            MDCY+A        P  S FF+PK GVS+PS+EVYIAGCC G PVILTKTI  SP+RK A  +   LDAIPE
Sbjct:   40 SAWLEVRLFYVRIAPCVVENVPDFLTLRHPRRETGASLEVNGVRVPSSQTASLKLRRDRVDRESSEVTYVSTETVRVTGCVDFEVYDNEDMV-LCGNLDRIEGAWNNGTVSDPKTGWGMDCYIAMGNGHVSGPSASVFFQPKFGVSSPSVEVYIAGCCGGVPVILTKTIQASPRRKVARHVT--LDAIPE 226          
BLAST of g.barbadense_cottongen_reftransV1_0098061 vs. ExPASy TrEMBL
Match: D7KQ66_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_311286 PE=4 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 7.128e-59
Identity = 116/190 (61.05%), Postives = 141/190 (74.21%), Query Frame = 2
Query:  377 SVWLEIRLFYVRIAPCVVDNVPDLLTLCHLRREIGVSLEINGSRVPASDSAVLTLRCDRLNRESSEVTYLSTDSVRVTGGFEFEVYEDEKKVLLCGSLERMEGEWS------------MDCYLAAA---AKEPGNSAFFKPKMGVSAPSIEVYIAGCCAGTPVILTKTILGSPKRKGASRLKWMLDAIPE 901
            S WLE+RLFYVRIAPCVV+NVPD LTL H RRE G SLE+NG RVP+S +A L LR DR++RESSEVTY+ST++VRVTG  +FEVY D   ++LCG+L+R+EG W+            MDCY+A        P +SAFF+PK+GVS+PS+EVYIAGCC G PVILTKTI  SP+RK A  +   LDAIPE
Sbjct:   41 SAWLEVRLFYVRIAPCVVENVPDFLTLRHPRRETGASLEVNGVRVPSSQTASLKLRRDRVDRESSEVTYVSTETVRVTGCVDFEVY-DNDDMVLCGNLDRIEGAWNNGTVSDPKTGWGMDCYIAMGNGHVSGPSSSAFFQPKLGVSSPSVEVYIAGCCGGVPVILTKTIQASPRRKVARHV--TLDAIPE 227          
BLAST of g.barbadense_cottongen_reftransV1_0098061 vs. ExPASy TrEMBL
Match: R0GMB1_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10009744mg PE=4 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 6.006e-58
Identity = 121/231 (52.38%), Postives = 157/231 (67.97%), Query Frame = 2
Query:  257 LISQSFPHLSNLYAMDHQLHDRSSILAQKTSNSYDLINHSSVWLEIRLFYVRIAPCVVDNVPDLLTLCHLRREIGVSLEINGSRVPASDSAVLTLRCDRLNRESSEVTYLSTDSVRVTGGFEFEVYEDEKKVLLCGSLERMEGEWS------------MDCYLAAAAKEP----GNSAFFKPKMGVSAPSIEVYIAGCCAGTPVILTKTILGSPKRKGASRLKWMLDAIPE 901
            +IS+   H  + +  +   H  +S ++  +S S       S WLE+RLFYVRIAPCVV+NVPD LTL H RRE G SLE+NG RVP+S +A L LR DR++RE+SEVTY+ST++VRVTG  +FEVY ++  V LCG+L+R+EG W+            MDCY+A    +      +SAFF+PK+GVS+PS+EVYIAGCC G PVILTKTI  SP+RK A  +   LDAIPE
Sbjct:    1 MISRDHHHHQDTFGTNKSYHMNTSTVSPPSSASS-----QSAWLEVRLFYVRIAPCVVENVPDFLTLRHPRRETGASLEVNGVRVPSSQTASLKLRRDRVDRETSEVTYVSTETVRVTGSVDFEVYHNDDMV-LCGNLDRIEGAWNNGTVSDPKTGWGMDCYIAMGNGQGSAPSSSSAFFQPKLGVSSPSVEVYIAGCCGGVPVILTKTIQVSPRRKVARHVT--LDAIPE 223          
BLAST of g.barbadense_cottongen_reftransV1_0098061 vs. ExPASy TrEMBL
Match: B9GQD0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s16490g PE=4 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 8.748e-57
Identity = 131/230 (56.96%), Postives = 155/230 (67.39%), Query Frame = 2
Query:  347 SNSYD--LINHSSVWLEIRLFYVRIAPCVVDNVPDLLTLCHLRREIGVSLEINGSRVPASDSAVLTLRCDRLNRESSEVTYLSTDSVRVTGGFEFEVYEDEKKVLLCGSLERMEGE------------------WSMDCYLAAAAKEPGNSAFFKPKMGVSAPSIEVYIAGCCAGTPVILTKTILGSPKRKGASRLKWMLDAIPEXXX--XXXXXXXXXXXXIRHRKLQV 970
            S+SY+  + N SS WLE+RLFYVR+ PCV+++VP  LTL HL R I   LEINGS++PA+DSA LTLR DRLN+E SEVTY+STDSVRVT G EFEV  D K ++LCGSLER+E                    W ++C LA    E G S F   K+GVSAP IEVYIAGCC G PVILTKTIL SP++K ASR   MLDAIPEDEE    K N    N  +R RK+Q+
Sbjct:    8 SHSYNNLITNKSSSWLEVRLFYVRVTPCVIESVPGHLTLRHLGRSISTPLEINGSKIPAADSATLTLRRDRLNKELSEVTYVSTDSVRVTCGVEFEVL-DNKDMVLCGSLERIETTSWGNNGSVGGLENDAKTGWCLECCLATGVFE-GKSVF---KLGVSAPVIEVYIAGCCGGVPVILTKTILVSPRKK-ASRYA-MLDAIPEDEELDNRKQNGVISNELVRQRKVQI 230          
BLAST of g.barbadense_cottongen_reftransV1_0098061 vs. ExPASy TrEMBL
Match: A0A022R4E4_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a018751mg PE=4 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 1.007e-56
Identity = 118/214 (55.14%), Postives = 149/214 (69.63%), Query Frame = 2
Query:  386 LEIRLFYVRIAPCVVDNVPDLLTLCHLRREIGVSLEINGSRVPASDSAVLTLRCDRLNRESSEVTYLSTDSVRVTGGFEFEVYE--DEKKVLLCGSLERMEGE-----------------WSMDCYLAAAAKEPGNSAFFKPKMGVSAPSIEVYIAGCCAGTPVILTKTILGSPKRKGASRLKWMLDAIPEXXXXXXXXXXXXXXXIRHRKLQV 970
            LEIRLFYVRIAPC VDN+PD L L HLRRE+GVSLEINGSRVP+S++  +TLR DR++++SSE TY+STDSV+++G  EFEV E  D+  ++LCGSL+R +                   W M+CY+A +    G S+  + K G+ +P+IEVYIAGCC GTPVIL KT+L SP+RK   R   MLDAIPEDEE GK      NG +R RKLQ+
Sbjct:    5 LEIRLFYVRIAPCAVDNLPDQLKLRHLRREVGVSLEINGSRVPSSETVSVTLRRDRVDKDSSEATYVSTDSVKLSGPAEFEVCEEKDDLDLILCGSLQRADAASAWSSDTSMSDNDSKTGWGMECYVANSIAN-GKSSLLQTKKGICSPTIEVYIAGCCNGTPVILMKTVLISPRRK--VRQGMMLDAIPEDEETGKEQRSLSNGMVRQRKLQL 215          
BLAST of g.barbadense_cottongen_reftransV1_0098061 vs. ExPASy TrEMBL
Match: A0A0D3C6X5_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea GN=AN PE=4 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 2.428e-56
Identity = 115/190 (60.53%), Postives = 142/190 (74.74%), Query Frame = 2
Query:  377 SVWLEIRLFYVRIAPCVVDNVPDLLTLCHLRREIGVSLEINGSRVPASDSAVLTLRCDRLNRESSEVTYLSTDSVRVTGGFEFEVYEDEKKVLLCGSLERMEGEWS-------------MDCYLAA--AAKEPGNSAFFKPKMGVSAPSIEVYIAGCCAGTPVILTKTILGSPKRKGASRLKWMLDAIPE 901
            S WLE+RLFYVRIAPCVV+NVPD LTL H RRE G SLE+NG RVP   +A L LR DR++RESSEVTY+ST++VRVTG  +FEVY D+++++LCG+L+R+EG WS             MDCY+A    +    +SAFF+PK+GVS+PS+EVYIAGCC G PVILTKTI  SP+RK A  +   LDAIPE
Sbjct:   41 SAWLEVRLFYVRIAPCVVENVPDSLTLRHPRRETGASLEVNGVRVPPLQTASLKLRRDRVDRESSEVTYVSTEAVRVTGCVDFEVY-DKEEMVLCGNLDRIEGAWSNNGTVSDAKTGWGMDCYVAMRNGSGSSSSSAFFRPKLGVSSPSVEVYIAGCCGGVPVILTKTIQASPRRKVARHV--TLDAIPE 227          
The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0098061 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 1
Match NameE-valueIdentityDescription
Y1015_ARATH1.775e-6461.05Uncharacterized protein At1g01500 OS=Arabidopsis t... [more]
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BLAST of g.barbadense_cottongen_reftransV1_0098061 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
D7KQ66_ARALL7.128e-5961.05Putative uncharacterized protein OS=Arabidopsis ly... [more]
R0GMB1_9BRAS6.006e-5852.38Uncharacterized protein OS=Capsella rubella GN=CAR... [more]
B9GQD0_POPTR8.748e-5756.96Uncharacterized protein OS=Populus trichocarpa GN=... [more]
A0A022R4E4_ERYGU1.007e-5655.14Uncharacterized protein OS=Erythranthe guttata GN=... [more]
A0A0D3C6X5_BRAOL2.428e-5660.53Uncharacterized protein OS=Brassica oleracea var. ... [more]

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Sequences
The following sequences are available for this feature:

contig sequence

>g.barbadense_cottongen_reftransV1_0098061 ID=g.barbadense_cottongen_reftransV1_0098061; Name=g.barbadense_cottongen_reftransV1_0098061; organism=Gossypium barbadense; type=contig; length=2999bp
GAGCCGCATAGGTTCTTGTCTTTGACTCGGCCCTTGTTTTGCTCTTGGCC
ACTGCCATTGCCGAATTATTAACTTCAAATTCACAACAAACCTCCCAAAA
ACAAACAAACAAACAACAACAAAAACCATCCTTGAGAGTGTTCATTCCCA
GCCCCTCAATCTTCCTAAACCCTAAAATTTACCCCCCCAACTAAATCCCA
TTTCTTTTTTCCTTCCCATTTCGGTCATTCATGGTTATCCCCAAAATTTC
CCACTTTTGATATCCCAATCATTCCCCCACCTCTCTAATTTGTATGCCAT
GGACCATCAACTGCATGATCGTTCGTCAATTCTAGCCCAGAAAACCTCGA
ATTCCTACGATCTCATAAACCATTCCTCGGTATGGCTCGAAATCCGTCTC
TTTTATGTTCGAATTGCGCCCTGCGTGGTCGACAACGTTCCCGACCTCCT
AACGCTCTGCCACCTCCGCCGCGAAATCGGTGTCTCTCTCGAAATCAATG
GCTCTCGTGTCCCGGCTTCTGATTCGGCCGTCCTTACCCTTCGCTGCGAC
CGTCTCAACCGGGAATCATCCGAGGTCACTTATTTAAGCACCGATAGCGT
CCGTGTCACGGGAGGGTTTGAATTCGAGGTTTACGAGGATGAAAAGAAGG
TATTGTTGTGTGGCTCGTTGGAAAGGATGGAAGGAGAGTGGAGCATGGAC
TGTTATCTGGCGGCAGCGGCTAAGGAACCTGGAAATTCAGCTTTTTTTAA
GCCCAAGATGGGTGTTTCAGCGCCGAGTATTGAAGTTTATATTGCCGGGT
GTTGTGCTGGCACGCCCGTGATATTGACCAAGACAATACTTGGGAGCCCT
AAGAGGAAAGGAGCATCGAGGCTTAAATGGATGTTGGATGCAATTCCTGA
GGACGAGGAATTCGGGAAAGGGAATGATAAGGGTGGCAATGGGTTTATCA
GACACCGGAAATTGCAGGTAAAATGTAACTGGTTTTATTGTCAGTTTTTT
CAATATCTGATCAATATTCATTATGTTGATGTAGATGCAATCATTCAAGC
ATGGTAGAAGCAGATTGGCATTGAGTGAAAAATGTTGATTGTTTAAAACT
CTTATGACAGGGTTTCAAAGGTTATTTATGTTATTGGTGCACAAAGATTG
TTCTTGCTTTTATAATTCTGCGAGTCGAAGTGCCATATGGGCTTTGGGTT
GACTATATATGATGGGAGGGTTATTTTTTTGTCAGATGGTAGGCACCAAG
GATTTATGTATGACGATACTTCTAGGGATATAATTGCGTTCTACCTGTTT
CTTGATAAAGGGTTGCCGTTTTCTTTGTCGTAATTATGATGATTAGGTCG
TTCATTTGCACCTCCAAGCAGTTTTTTTTTTTGGGGGGGGGGGCATCTAA
TCCGAATTATTTAGGGTATTGTCAGCTGCTCTGAGTAATCGGTTTTTTAT
ATTTTCCCACCCAAATTTGTCTCCTGGATTCACTTTTAGGGTGCAAATAT
AATATGTCTGAGTTCTGGAGGAATAAGAGCAACAGCTGCCTGTTATGATG
GCATAGCTACATCATAAACCAACATAGGATGAGTGCTGCTTTGAGTTTCT
TTTTTTCTTTTTATGCAGATGTATATATAAGTTTGTTTCTTTACCCCTTG
TGTGTAACTACGAGCTTCAAAATAACAATGGGAATATCCAAAATGTGCTT
GTTTTGTGCATTGAAGTAGATTCTCAGCTTCTATTTTTTCTTTCTTGCAA
TTCAATTTGTCCATAAATGGTTTTCTTGTCATCACATTTTACTACAATGG
AATGATTGTTGTGGTGGTGTACAGGTTACAGATGCCGAAGTCGAAGATTA
CGACTCTGATGGTAAAATTGGACTTAGTCACTATGCTGAAGAAATGTATG
CTGGCGAAGATGGCCAACTTTCATGGTTTAATGCCGGTGTTAGAGTTGGT
GTTGGAATTGGCCTCGGAGTGTGCCTTGGGGTTGGAGTCGGAGTTGGACT
GCTTATGCGATCATATCAAGCAACTACCCGGAACTTTAGGAGAAGGTTTT
TCTAAGATAGATCCCATCACTTTGCATTGTGACGATGTCCTCTTTTAATT
ACGAAGAAGTTAAAAGGAAAAAGAAATTCAGGATTTTTGTAGCAGCCTGG
AAGATATCAGTGTTGCAGGCCAAAAACTATCAAAAAGCTGAAGATAGCAC
CTCAAACTTATAAATACGAGGCCTTGTAGGTTGTCATAGGAAGTGGATAG
AAGTTTCTAAAGCATCCCTTACCTTGACCGTGAACTGTGAACATACTTGT
TTATATAGAAAAAGAAGACTAGAGATGAAGGAGAAATAAGAAGAATGTGC
TGCCATATAGAGTAGTTCAACAGTTGGTGTAATGTGAGAGTGTACATGTA
TATATCTATCATTCCAATTCATTAGTTACAAAAGCCGCGAGTTGTTTTCA
ATTTGTAATGTATTATAGTTGTATCCTGGATGAGAGAACAAAAAGTGTTC
AGTTTTAAGTAAATTTGAATGAAGGTTTTTTGGGAAGTTTGATTTGATCT
TTCTTAAAAGACTGCTCATGCCCTTTATACGAATATTCTGTTCCCTACGT
ACATGGAAAAGGGTCTCTCGCTAATCGCCAAAAACTGGGACAAAACTGGG
ATTTTTGAAATTCTAAACAATGCCAAGATGAGATCTTTTTCAATCAGATA
CGAGATGCGTTTTCAGTCGACCTTACAATCTCCATCATTTGATATTTAGC
CCCTGCAAATGCCTAAATTTACACCCATAAACCCTAACCTCAATTAACCA
CCGCCCGAGAAATACTTTTACTACCCCACTCCCTTGCTCAGTGATTCATT
GGAAACAATAGCGTGGGATCCGAGGATGAATACATCCATCCCAACGACGT
CGTCTGGGCTCAGATCCTCTGCCACGATGCCTCGCCGTAACAACCCTACG
CCTCTCCCTTTGGTCGTTTCCCTCAACTGCGTTGAAGATTGCGTCCTCG
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