g.barbadense_cottongen_reftransV1_0098061, g.barbadense_cottongen_reftransV1_0098061 (contig) Gossypium barbadense
Overview
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0098061 vs. ExPASy Swiss-Prot
Match: Y1015_ARATH (Uncharacterized protein At1g01500 OS=Arabidopsis thaliana GN=At1g01500 PE=2 SV=1) HSP 1 Score: 225.713 bits (574), Expect = 1.775e-64 Identity = 116/190 (61.05%), Postives = 139/190 (73.16%), Query Frame = 2 Query: 377 SVWLEIRLFYVRIAPCVVDNVPDLLTLCHLRREIGVSLEINGSRVPASDSAVLTLRCDRLNRESSEVTYLSTDSVRVTGGFEFEVYEDEKKVLLCGSLERMEGEWS------------MDCYLAAA---AKEPGNSAFFKPKMGVSAPSIEVYIAGCCAGTPVILTKTILGSPKRKGASRLKWMLDAIPE 901 S WLE+RLFYVRIAPCVV+NVPD LTL H RRE G SLE+NG RVP+S +A L LR DR++RESSEVTY+ST++VRVTG +FEVY++E V LCG+L+R+EG W+ MDCY+A P S FF+PK GVS+PS+EVYIAGCC G PVILTKTI SP+RK A + LDAIPE Sbjct: 40 SAWLEVRLFYVRIAPCVVENVPDFLTLRHPRRETGASLEVNGVRVPSSQTASLKLRRDRVDRESSEVTYVSTETVRVTGCVDFEVYDNEDMV-LCGNLDRIEGAWNNGTVSDPKTGWGMDCYIAMGNGHVSGPSASVFFQPKFGVSSPSVEVYIAGCCGGVPVILTKTIQASPRRKVARHVT--LDAIPE 226
BLAST of g.barbadense_cottongen_reftransV1_0098061 vs. ExPASy TrEMBL
Match: D7KQ66_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_311286 PE=4 SV=1) HSP 1 Score: 230.335 bits (586), Expect = 7.128e-59 Identity = 116/190 (61.05%), Postives = 141/190 (74.21%), Query Frame = 2 Query: 377 SVWLEIRLFYVRIAPCVVDNVPDLLTLCHLRREIGVSLEINGSRVPASDSAVLTLRCDRLNRESSEVTYLSTDSVRVTGGFEFEVYEDEKKVLLCGSLERMEGEWS------------MDCYLAAA---AKEPGNSAFFKPKMGVSAPSIEVYIAGCCAGTPVILTKTILGSPKRKGASRLKWMLDAIPE 901 S WLE+RLFYVRIAPCVV+NVPD LTL H RRE G SLE+NG RVP+S +A L LR DR++RESSEVTY+ST++VRVTG +FEVY D ++LCG+L+R+EG W+ MDCY+A P +SAFF+PK+GVS+PS+EVYIAGCC G PVILTKTI SP+RK A + LDAIPE Sbjct: 41 SAWLEVRLFYVRIAPCVVENVPDFLTLRHPRRETGASLEVNGVRVPSSQTASLKLRRDRVDRESSEVTYVSTETVRVTGCVDFEVY-DNDDMVLCGNLDRIEGAWNNGTVSDPKTGWGMDCYIAMGNGHVSGPSSSAFFQPKLGVSSPSVEVYIAGCCGGVPVILTKTIQASPRRKVARHV--TLDAIPE 227
BLAST of g.barbadense_cottongen_reftransV1_0098061 vs. ExPASy TrEMBL
Match: R0GMB1_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10009744mg PE=4 SV=1) HSP 1 Score: 212.616 bits (540), Expect = 6.006e-58 Identity = 121/231 (52.38%), Postives = 157/231 (67.97%), Query Frame = 2 Query: 257 LISQSFPHLSNLYAMDHQLHDRSSILAQKTSNSYDLINHSSVWLEIRLFYVRIAPCVVDNVPDLLTLCHLRREIGVSLEINGSRVPASDSAVLTLRCDRLNRESSEVTYLSTDSVRVTGGFEFEVYEDEKKVLLCGSLERMEGEWS------------MDCYLAAAAKEP----GNSAFFKPKMGVSAPSIEVYIAGCCAGTPVILTKTILGSPKRKGASRLKWMLDAIPE 901 +IS+ H + + + H +S ++ +S S S WLE+RLFYVRIAPCVV+NVPD LTL H RRE G SLE+NG RVP+S +A L LR DR++RE+SEVTY+ST++VRVTG +FEVY ++ V LCG+L+R+EG W+ MDCY+A + +SAFF+PK+GVS+PS+EVYIAGCC G PVILTKTI SP+RK A + LDAIPE Sbjct: 1 MISRDHHHHQDTFGTNKSYHMNTSTVSPPSSASS-----QSAWLEVRLFYVRIAPCVVENVPDFLTLRHPRRETGASLEVNGVRVPSSQTASLKLRRDRVDRETSEVTYVSTETVRVTGSVDFEVYHNDDMV-LCGNLDRIEGAWNNGTVSDPKTGWGMDCYIAMGNGQGSAPSSSSAFFQPKLGVSSPSVEVYIAGCCGGVPVILTKTIQVSPRRKVARHVT--LDAIPE 223
BLAST of g.barbadense_cottongen_reftransV1_0098061 vs. ExPASy TrEMBL
Match: B9GQD0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s16490g PE=4 SV=1) HSP 1 Score: 208.764 bits (530), Expect = 8.748e-57 Identity = 131/230 (56.96%), Postives = 155/230 (67.39%), Query Frame = 2 Query: 347 SNSYD--LINHSSVWLEIRLFYVRIAPCVVDNVPDLLTLCHLRREIGVSLEINGSRVPASDSAVLTLRCDRLNRESSEVTYLSTDSVRVTGGFEFEVYEDEKKVLLCGSLERMEGE------------------WSMDCYLAAAAKEPGNSAFFKPKMGVSAPSIEVYIAGCCAGTPVILTKTILGSPKRKGASRLKWMLDAIPEXXX--XXXXXXXXXXXXIRHRKLQV 970 S+SY+ + N SS WLE+RLFYVR+ PCV+++VP LTL HL R I LEINGS++PA+DSA LTLR DRLN+E SEVTY+STDSVRVT G EFEV D K ++LCGSLER+E W ++C LA E G S F K+GVSAP IEVYIAGCC G PVILTKTIL SP++K ASR MLDAIPEDEE K N N +R RK+Q+ Sbjct: 8 SHSYNNLITNKSSSWLEVRLFYVRVTPCVIESVPGHLTLRHLGRSISTPLEINGSKIPAADSATLTLRRDRLNKELSEVTYVSTDSVRVTCGVEFEVL-DNKDMVLCGSLERIETTSWGNNGSVGGLENDAKTGWCLECCLATGVFE-GKSVF---KLGVSAPVIEVYIAGCCGGVPVILTKTILVSPRKK-ASRYA-MLDAIPEDEELDNRKQNGVISNELVRQRKVQI 230
BLAST of g.barbadense_cottongen_reftransV1_0098061 vs. ExPASy TrEMBL
Match: A0A022R4E4_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a018751mg PE=4 SV=1) HSP 1 Score: 208.379 bits (529), Expect = 1.007e-56 Identity = 118/214 (55.14%), Postives = 149/214 (69.63%), Query Frame = 2 Query: 386 LEIRLFYVRIAPCVVDNVPDLLTLCHLRREIGVSLEINGSRVPASDSAVLTLRCDRLNRESSEVTYLSTDSVRVTGGFEFEVYE--DEKKVLLCGSLERMEGE-----------------WSMDCYLAAAAKEPGNSAFFKPKMGVSAPSIEVYIAGCCAGTPVILTKTILGSPKRKGASRLKWMLDAIPEXXXXXXXXXXXXXXXIRHRKLQV 970 LEIRLFYVRIAPC VDN+PD L L HLRRE+GVSLEINGSRVP+S++ +TLR DR++++SSE TY+STDSV+++G EFEV E D+ ++LCGSL+R + W M+CY+A + G S+ + K G+ +P+IEVYIAGCC GTPVIL KT+L SP+RK R MLDAIPEDEE GK NG +R RKLQ+ Sbjct: 5 LEIRLFYVRIAPCAVDNLPDQLKLRHLRREVGVSLEINGSRVPSSETVSVTLRRDRVDKDSSEATYVSTDSVKLSGPAEFEVCEEKDDLDLILCGSLQRADAASAWSSDTSMSDNDSKTGWGMECYVANSIAN-GKSSLLQTKKGICSPTIEVYIAGCCNGTPVILMKTVLISPRRK--VRQGMMLDAIPEDEETGKEQRSLSNGMVRQRKLQL 215
BLAST of g.barbadense_cottongen_reftransV1_0098061 vs. ExPASy TrEMBL
Match: A0A0D3C6X5_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea GN=AN PE=4 SV=1) HSP 1 Score: 220.705 bits (561), Expect = 2.428e-56 Identity = 115/190 (60.53%), Postives = 142/190 (74.74%), Query Frame = 2 Query: 377 SVWLEIRLFYVRIAPCVVDNVPDLLTLCHLRREIGVSLEINGSRVPASDSAVLTLRCDRLNRESSEVTYLSTDSVRVTGGFEFEVYEDEKKVLLCGSLERMEGEWS-------------MDCYLAA--AAKEPGNSAFFKPKMGVSAPSIEVYIAGCCAGTPVILTKTILGSPKRKGASRLKWMLDAIPE 901 S WLE+RLFYVRIAPCVV+NVPD LTL H RRE G SLE+NG RVP +A L LR DR++RESSEVTY+ST++VRVTG +FEVY D+++++LCG+L+R+EG WS MDCY+A + +SAFF+PK+GVS+PS+EVYIAGCC G PVILTKTI SP+RK A + LDAIPE Sbjct: 41 SAWLEVRLFYVRIAPCVVENVPDSLTLRHPRRETGASLEVNGVRVPPLQTASLKLRRDRVDRESSEVTYVSTEAVRVTGCVDFEVY-DKEEMVLCGNLDRIEGAWSNNGTVSDAKTGWGMDCYVAMRNGSGSSSSSAFFRPKLGVSSPSVEVYIAGCCGGVPVILTKTIQASPRRKVARHV--TLDAIPE 227 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0098061 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 1
BLAST of g.barbadense_cottongen_reftransV1_0098061 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0098061 ID=g.barbadense_cottongen_reftransV1_0098061; Name=g.barbadense_cottongen_reftransV1_0098061; organism=Gossypium barbadense; type=contig; length=2999bpback to top |