g.barbadense_cottongen_reftransV1_0098061, g.barbadense_cottongen_reftransV1_0098061 (contig) Gossypium barbadense
Overview
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0098061 vs. ExPASy Swiss-Prot
Match: Y1015_ARATH (Uncharacterized protein At1g01500 OS=Arabidopsis thaliana GN=At1g01500 PE=2 SV=1) HSP 1 Score: 225.713 bits (574), Expect = 1.775e-64 Identity = 116/190 (61.05%), Postives = 139/190 (73.16%), Query Frame = 2 Query: 377 SVWLEIRLFYVRIAPCVVDNVPDLLTLCHLRREIGVSLEINGSRVPASDSAVLTLRCDRLNRESSEVTYLSTDSVRVTGGFEFEVYEDEKKVLLCGSLERMEGEWS------------MDCYLAAA---AKEPGNSAFFKPKMGVSAPSIEVYIAGCCAGTPVILTKTILGSPKRKGASRLKWMLDAIPE 901 S WLE+RLFYVRIAPCVV+NVPD LTL H RRE G SLE+NG RVP+S +A L LR DR++RESSEVTY+ST++VRVTG +FEVY++E V LCG+L+R+EG W+ MDCY+A P S FF+PK GVS+PS+EVYIAGCC G PVILTKTI SP+RK A + LDAIPE Sbjct: 40 SAWLEVRLFYVRIAPCVVENVPDFLTLRHPRRETGASLEVNGVRVPSSQTASLKLRRDRVDRESSEVTYVSTETVRVTGCVDFEVYDNEDMV-LCGNLDRIEGAWNNGTVSDPKTGWGMDCYIAMGNGHVSGPSASVFFQPKFGVSSPSVEVYIAGCCGGVPVILTKTIQASPRRKVARHVT--LDAIPE 226
BLAST of g.barbadense_cottongen_reftransV1_0098061 vs. ExPASy TrEMBL
Match: B9RDX6_RICCO (2-hydroxyacid dehydrogenase, putative OS=Ricinus communis GN=RCOM_1616510 PE=4 SV=1) HSP 1 Score: 262.307 bits (669), Expect = 4.119e-70 Identity = 132/198 (66.67%), Postives = 155/198 (78.28%), Query Frame = 2 Query: 338 QKTSNSYDLINHSSVWLEIRLFYVRIAPCVVDNVPDLLTLCHLRREIGVSLEINGSRVPASDSAVLTLRCDRLNRESSEVTYLSTDSVRVTGGFEFEVYEDEKKVLLCGSLERMEGE----------WSMDCYLAAAAKEPGNSAFFKPKMGVSAPSIEVYIAGCCAGTPVILTKTILGSPKRKGASRLKWMLDAIPE 901 ++ SNSY+LI S+ WLEIRLFYVRI PCV+D+VPD LTL HLRREI LEINGSR+PA+DSA +TLR DRLN+ESSEVTY+STDSVR+TG EFEV E E + LCGSLER+E WSM+CY+AA+ E GNS FF+PK+GVSAP+IEVYIAGCC G PVILTKTIL SP++KG+ MLDAIPE Sbjct: 5 EQESNSYNLITSSATWLEIRLFYVRITPCVIDSVPDHLTLRHLRREISTPLEINGSRIPAADSASVTLRRDRLNKESSEVTYVSTDSVRITGALEFEVIE-ENDLFLCGSLERIESTTLWGNDSKTGWSMECYMAASVGE-GNSVFFQPKLGVSAPAIEVYIAGCCGGIPVILTKTILVSPRKKGSRH--GMLDAIPE 198
BLAST of g.barbadense_cottongen_reftransV1_0098061 vs. ExPASy TrEMBL
Match: A0A0A0L3C9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G121610 PE=4 SV=1) HSP 1 Score: 244.588 bits (623), Expect = 1.949e-69 Identity = 139/241 (57.68%), Postives = 176/241 (73.03%), Query Frame = 2 Query: 299 MDHQLHDRSSILAQKTSNSY--DLINHSSVWLEIRLFYVRIAPCVVDNVPDLLTLCHLRREIGVSLEINGSRVPASDSAVLTLRCDRLNRESSEVTYLSTDSVRVTGGFEFEVYEDEKKVLLCGSLERMEGE---------------WSMDCYLAAAAKEPGNSAFFKPKMGVSAPSIEVYIAGCCAGTPVILTKTILGSPKRKGASRLKWMLDAIPEXXXXXXXXXXXXXXXIRHRKLQV 970 MD Q D SS+ +TSNSY L S W E+RLFYVRI+PCV+ +VPD L L HLRREIGVSLEINGS++PASDSA + LR DRLN+ESSEVTY+STDS+RVTGG EFEVYE+E ++LCGSLERM+ W+M+C++AA+ G+SAFF+PK+GVS+P+IEVYIAGCC+G PVILT+TI SP+R+ + +LDAIPE +E + G NG IRH+K+Q+ Sbjct: 1 MDFQERD-SSMPISRTSNSYTNGLSLTHSAWFEVRLFYVRISPCVIASVPDHLNLRHLRREIGVSLEINGSQIPASDSASIALRRDRLNKESSEVTYVSTDSIRVTGGVEFEVYENE-DLILCGSLERMDANWINGSVGLENNSKTGWTMECFMAASMC-SGSSAFFQPKLGVSSPAIEVYIAGCCSGMPVILTQTIQVSPRRRNLRQA--VLDAIPE-DEEVGKEENGSNGLIRHQKVQM 235 HSP 2 Score: 63.1586 bits (152), Expect = 3.186e-7 Identity = 54/70 (77.14%), Postives = 63/70 (90.00%), Query Frame = 1 Query: 1819 VQVTDAEVEDYDSDGKIGLSHYAEEMYAGEDGQLSWFNAXXXXXXXXXXXXXXXXXXXXXXXMRSYQATT 2028 VQ+ ++EV+DYD DGK+G +Y ++MY GEDGQLSWFNAGVRVGVGIGLGVCLGVG+GVGLLMRSYQ TT Sbjct: 233 VQMLESEVDDYDPDGKMGHGYYGDDMYTGEDGQLSWFNAGVRVGVGIGLGVCLGVGIGVGLLMRSYQTTT 302
BLAST of g.barbadense_cottongen_reftransV1_0098061 vs. ExPASy TrEMBL
Match: F6I648_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0046g02240 PE=4 SV=1) HSP 1 Score: 244.588 bits (623), Expect = 7.187e-69 Identity = 146/247 (59.11%), Postives = 174/247 (70.45%), Query Frame = 2 Query: 254 LLISQSFPHLS--------NLYAMDHQLHDRSSILAQKTSNS----YDLIN-HSS---VWLEIRLFYVRIAPCVVDNVPDLLTLCHLRREIGVSLEINGSRVPASDSAVLTLRCDRLNRESSEVTYLSTDSVRVTGGFEFEVYEDEKKVLLCGSLERMEGEWS---------------MDCYLAAAAKEPGNSAFFKPKMGVSAPSIEVYIAGCCAGTPVILTKTILGSPKRKGASRLKWMLDAIPE 901 L +S SF H S L MD++ SSI + K+ NS Y +I+ HSS V LEIRLFYVRIAPCV+D+VPD LTLCH+RR IGVSLEING+R+PAS++A LTLR DRL++ESSEV Y+STDSVRV GG EFEVYE E +++LCGSLERME W MDCY AA+ G+SAFF+PK+GVS+PSIEVYIAGC + PVILTKTI SP++K ASR MLDAIPE Sbjct: 14 LCVSLSFRHSSLFDSFSLLKLIFMDYE-EGNSSIASAKSPNSRSNLYRIIDGHSSPPSVSLEIRLFYVRIAPCVIDSVPDHLTLCHIRRGIGVSLEINGARIPASETASLTLRRDRLDKESSEVIYVSTDSVRVAGGVEFEVYEKE-EMILCGSLERMESSWGNGSGGLENGSRTGWDMDCYTAASVV-AGSSAFFQPKLGVSSPSIEVYIAGCSSSMPVILTKTIQISPRQK-ASR-HGMLDAIPE 255
BLAST of g.barbadense_cottongen_reftransV1_0098061 vs. ExPASy TrEMBL
Match: M1BPH3_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400019387 PE=4 SV=1) HSP 1 Score: 230.72 bits (587), Expect = 1.137e-64 Identity = 120/196 (61.22%), Postives = 146/196 (74.49%), Query Frame = 2 Query: 356 YDLINHSSVWLEIRLFYVRIAPCVVDNVPDLLTLCHLRREIGVSLEINGSRVPASDSAVLTLRCDRLNRESSEVTYLSTDSVRVTGGFEFEVYEDEKKVLLCGSLERME--------------GEWSMDCYLAAAAKEPGNSAFFKPKMGVSAPSIEVYIAGCCAGTPVILTKTILGSPKRKGASRLKWMLDAIPE 901 Y N + LEIRLFYVRI PC VD VPD L L HLRRE+GV+LEIN SR+PA+D+A++TLR DR+++ESSEVTY+STDSVRV+G EFEV+E+EK+++LCGSLER+E WSMDCY A+ G SAFF+PK GVS+PSIEVYIAGCC+G PVIL+KTI SP+RK + MLDAIPE Sbjct: 13 YKNSNFTGGCLEIRLFYVRITPCAVDTVPDHLILRHLRREMGVTLEINSSRIPATDTAIITLRRDRVDKESSEVTYVSTDSVRVSGPVEFEVHENEKELILCGSLERVETTWANGNVLENDSRSGWSMDCYTTASFGNDG-SAFFQPKFGVSSPSIEVYIAGCCSGVPVILSKTIQVSPRRKLPR--QGMLDAIPE 205
BLAST of g.barbadense_cottongen_reftransV1_0098061 vs. ExPASy TrEMBL
Match: K4CYH5_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc10g011980.2 PE=4 SV=1) HSP 1 Score: 224.942 bits (572), Expect = 1.190e-62 Identity = 120/215 (55.81%), Postives = 151/215 (70.23%), Query Frame = 2 Query: 299 MDHQLHDRSSILAQKTSNSYDLINHSSVWLEIRLFYVRIAPCVVDNVPDLLTLCHLRREIGVSLEINGSRVPASDSAVLTLRCDRLNRESSEVTYLSTDSVRVTGGFEFEVYEDEKKVLLCGSLERME--------------GEWSMDCYLAAAAKEPGNSAFFKPKMGVSAPSIEVYIAGCCAGTPVILTKTILGSPKRKGASRLKWMLDAIPE 901 M +Q D S + + + N + LEIRLFYVRI PC V+ VPD L L HLRRE+GV+LEIN SR+PA+D+ ++TLR DR+++ESSEVT++STDSVRV+G EFEV+E+E +++LCGSLER+E WSMDCY AA+ G SAFF+PK GVS PSIEVYIAGCC+G PVIL+KTI SP+RK + MLDAIPE Sbjct: 1 MGNQGQDMSMAIYKNS-------NFTGGCLEIRLFYVRITPCAVETVPDHLILRHLRREMGVTLEINSSRIPANDTGIITLRRDRVDKESSEVTFVSTDSVRVSGPVEFEVHENENELILCGSLERVETTWANGNVLENDSRSGWSMDCYTAASFGN-GGSAFFQPKFGVSLPSIEVYIAGCCSGVPVILSKTIQVSPRRKLPR--QGMLDAIPE 205
BLAST of g.barbadense_cottongen_reftransV1_0098061 vs. ExPASy TrEMBL
Match: A0A078DMA6_BRANA (BnaA10g00450D protein OS=Brassica napus GN=BnaA10g00450D PE=4 SV=1) HSP 1 Score: 224.557 bits (571), Expect = 1.929e-62 Identity = 114/188 (60.64%), Postives = 140/188 (74.47%), Query Frame = 2 Query: 377 SVWLEIRLFYVRIAPCVVDNVPDLLTLCHLRREIGVSLEINGSRVPASDSAVLTLRCDRLNRESSEVTYLSTDSVRVTGGFEFEVYEDEKKVLLCGSLERMEGEWS-------------MDCYLAAAAKEPGNSAFFKPKMGVSAPSIEVYIAGCCAGTPVILTKTILGSPKRKGASRLKWMLDAIPE 901 S WLE+RLFYVRIAPC V+NVPD LTL H RRE G SLE+NG RVP +A L LR DR++RESSEVTY+ST++VRVTG +FEVY D+++++LCG+L+R+EG WS MDCY+A +SAFF+PK+GVS+PS+EVYIAGCC G PVILTKTI SP+RK A + LDAIPE Sbjct: 18 SAWLEVRLFYVRIAPCFVENVPDSLTLRHPRRETGASLEVNGVRVPPLQTASLKLRRDRVDRESSEVTYVSTEAVRVTGCVDFEVY-DKEEMVLCGNLDRIEGAWSNNGTVSDAKTGWGMDCYVAMRNGSSSSSAFFRPKLGVSSPSVEVYIAGCCGGVPVILTKTIQASPRRKVARHVT--LDAIPE 202
BLAST of g.barbadense_cottongen_reftransV1_0098061 vs. ExPASy TrEMBL
Match: V4MWN2_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10008178mg PE=4 SV=1) HSP 1 Score: 219.935 bits (559), Expect = 1.948e-60 Identity = 121/234 (51.71%), Postives = 156/234 (66.67%), Query Frame = 2 Query: 257 LISQSFPHLSNLYAMDHQLHDRSSILAQKTSNSYDLINHSSVWLEIRLFYVRIAPCVVDNVPDLLTLCHLRREIGVSLEINGSRVPASDSAVLTLRCDRLNRESSEVTYLSTDSVRVTGGFEFEVYEDEKKVLLCGSLERMEGEWS------------MDCYLA-------AAAKEPGNSAFFKPKMGVSAPSIEVYIAGCCAGTPVILTKTILGSPKRKGASRLKWMLDAIPE 901 +IS+ H + H ++S +A +++ + S WLE+RLFYVRIAPCVV+NVPD LTL H RRE G SLE+NG RVP S +A L LR DR++RESSEVTY++T++VRVTG +FEVY++E V LCG+L+R+EG W+ MDCY+A +SAFF+PK+GVS+PS+EVYIAGCC G PVILTKTI SP+RK A + LDAIPE Sbjct: 1 MISRHHHHHQDPLGTTKSYHMKTSGVAPSSAS---IPLSQSAWLEVRLFYVRIAPCVVENVPDFLTLRHPRRETGASLEVNGVRVPPSQTASLQLRRDRVDRESSEVTYVTTETVRVTGCVDFEVYDNEDMV-LCGNLDRIEGAWNNGTVSDPKTGWGMDCYMAMGNGSGSGHGSGSSSSAFFQPKLGVSSPSVEVYIAGCCGGVPVILTKTIQASPRRKVARHVT--LDAIPE 228
BLAST of g.barbadense_cottongen_reftransV1_0098061 vs. ExPASy TrEMBL
Match: B9I8P5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s08540g PE=4 SV=1) HSP 1 Score: 218.394 bits (555), Expect = 3.136e-60 Identity = 137/238 (57.56%), Postives = 161/238 (67.65%), Query Frame = 2 Query: 317 DRSSILAQKTSNSYDLINHSSVWLEIRLFYVRIAPCVVDNVPDLLTLCHLRREIGVSLEINGSRVPASDSAVLTLRCDRLNRESSEVTYLSTDSVRVTGGFEFEVYEDEKKVLLCGSLERMEGE------------------WSMDCYLAAAAKEPGNSAFFKPKMGVSAPSIEVYIAGCCAGTPVILTKTILGSPKRKGASRLKWMLDAIPEXXX--XXXXXXXXXXXXIRHRKLQV 970 DR+ I + S Y + N SS WLEIRLFYVR+ PCV+++VPD LT+ HLRR I LEINGS++P+SDSA LTLR DRLN+ESSEVTY+STDSVRVT G EFEV D K ++LCGSLER+E WS++C +AA E GNS F K+GVSAP IEVYIAGCC G PVILTKTIL P +K SR MLDAIPEDEE K N NG +R RK+Q+ Sbjct: 2 DRNHI--ESNSYKYLITNKSSSWLEIRLFYVRVTPCVIESVPDHLTIRHLRRSISTPLEINGSKIPSSDSASLTLRRDRLNKESSEVTYVSTDSVRVTRGVEFEVL-DNKDMVLCGSLERIETTSWGNNGGVGGLENDAKTGWSLECCVAAGVFE-GNSVF---KLGVSAPVIEVYIAGCCGGVPVILTKTILVGPMKK-PSRYA-MLDAIPEDEELDNRKQNGVISNGLVRQRKVQI 230
BLAST of g.barbadense_cottongen_reftransV1_0098061 vs. ExPASy TrEMBL
Match: M4EWS4_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra033259 PE=4 SV=1) HSP 1 Score: 216.853 bits (551), Expect = 1.276e-59 Identity = 114/191 (59.69%), Postives = 141/191 (73.82%), Query Frame = 2 Query: 377 SVWLEIRLFYVRIAPCVVDNVPDLLTLCHLRREIGVSLEINGSRVPASDSAVLTLRCDRLNRESSEVTYLSTDSVRVTGGFEFEVYEDEKKVLLCGSLERMEGEWS-------------MDCYLA---AAAKEPGNSAFFKPKMGVSAPSIEVYIAGCCAGTPVILTKTILGSPKRKGASRLKWMLDAIPE 901 S WLE+RLFYVRIAPC V+NVPD LTL H RRE G SLE+NG RVP +A L LR DR++RESSEVTY+ST++VRVTG +FEVY D+++++LCG+L+R+EG WS MDCY+A + +SAFF+PK+GVS+PS+EVYIAGCC G PVILTKTI SP+RK A + LDAIPE Sbjct: 18 SAWLEVRLFYVRIAPCFVENVPDSLTLRHPRRETGASLEVNGVRVPPLQTASLKLRRDRVDRESSEVTYVSTEAVRVTGCVDFEVY-DKEEMVLCGNLDRIEGAWSNNGTVSDAKTGWGMDCYVAMRNGSGSSSSSSAFFRPKLGVSSPSVEVYIAGCCGGVPVILTKTIQASPRRKVARHVT--LDAIPE 205
BLAST of g.barbadense_cottongen_reftransV1_0098061 vs. ExPASy TrEMBL
Match: A0A087HK84_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA1G007300 PE=4 SV=1) HSP 1 Score: 216.083 bits (549), Expect = 2.215e-59 Identity = 112/187 (59.89%), Postives = 139/187 (74.33%), Query Frame = 2 Query: 377 SVWLEIRLFYVRIAPCVVDNVPDLLTLCHLRREIGVSLEINGSRVPASDSAVLTLRCDRLNRESSEVTYLSTDSVRVTGGFEFEVYEDEKKVLLCGSLERMEGEWS------------MDCYLAAA-AKEPGNSAFFKPKMGVSAPSIEVYIAGCCAGTPVILTKTILGSPKRKGASRLKWMLDAIP 898 S WLE+RLFYVRI+PCVV+NVPD LTL H RRE G SLE+NG RVP+S +A L LR DR+++ESSEVTY+ST++VRVTG +FEVYE++ V LCG+L+R+EG W+ MDCY+A +SAF +PK+GVS+PS+EVYIAGCC G PVILTKTI SP+RK A + LDAIP Sbjct: 20 SAWLEVRLFYVRISPCVVENVPDFLTLRHPRRETGASLEVNGVRVPSSQTASLKLRRDRVDKESSEVTYVSTETVRVTGCVDFEVYENDDMV-LCGNLDRIEGAWNNGTVSDPKTGWGMDCYMAMGNGSGSSSSAFLQPKLGVSSPSVEVYIAGCCGGVPVILTKTIQASPRRKVARHVT--LDAIP 203 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0098061 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 1
BLAST of g.barbadense_cottongen_reftransV1_0098061 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pagesback to topSequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0098061 ID=g.barbadense_cottongen_reftransV1_0098061; Name=g.barbadense_cottongen_reftransV1_0098061; organism=Gossypium barbadense; type=contig; length=2999bpback to top |