g.barbadense_cottongen_reftransV1_0098060, g.barbadense_cottongen_reftransV1_0098060 (contig) Gossypium barbadense
Overview
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0098060 vs. ExPASy Swiss-Prot
Match: BRCA1_HUMAN (Breast cancer type 1 susceptibility protein OS=Homo sapiens GN=BRCA1 PE=1 SV=2) HSP 1 Score: 75.0998 bits (183), Expect = 3.841e-12 Identity = 48/171 (28.07%), Postives = 87/171 (50.88%), Query Frame = 2 Query: 2543 KLVLCCSGLTVEEKEIMSEFEKLAGVTVLKRWDSNITHIIASTDENGACKRTLKILMGILEGKWILNIKWVKACIKAMKLVDELKYEITIDVHGIRD--GPRLGRLRLQNKQPKLFDGCKFYIMGDFEPSYKGDLQDVLIAAGGTILHRKPISGDPGARLLGSPAFPIFII 3049 ++ + SGLT EE ++ +F + +T+ TH++ TD C+RTLK +GI GKW+++ WV IK K+++E +E+ DV R+ GP+ R +++ K+F G + G F L+ ++ G +++ K +S + LG+ PI ++ Sbjct: 1649 RMSMVVSGLTPEEFMLVYKFARKHHITLTNLITEETTHVVMKTDAEFVCERTLKYFLGIAGGKWVVSYFWVTQSIKERKMLNEHDFEVRGDVVNGRNHQGPKRAR---ESQDRKIFRGLEICCYGPFTNMPTDQLEWMVQLCGASVV--KELS----SFTLGTGVHPIVVV 1810
BLAST of g.barbadense_cottongen_reftransV1_0098060 vs. ExPASy Swiss-Prot
Match: BRCA1_GORGO (Breast cancer type 1 susceptibility protein homolog OS=Gorilla gorilla gorilla GN=BRCA1 PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 7.745e-12 Identity = 48/171 (28.07%), Postives = 86/171 (50.29%), Query Frame = 2 Query: 2543 KLVLCCSGLTVEEKEIMSEFEKLAGVTVLKRWDSNITHIIASTDENGACKRTLKILMGILEGKWILNIKWVKACIKAMKLVDELKYEITIDVHGIRD--GPRLGRLRLQNKQPKLFDGCKFYIMGDFEPSYKGDLQDVLIAAGGTILHRKPISGDPGARLLGSPAFPIFII 3049 ++ + SGLT EE ++ +F + +T+ TH++ TD C+RTLK +GI GKW+++ WV IK K+++E +E+ DV R+ GP+ R +++ K+F G G F L+ ++ G +++ K +S + LG+ PI ++ Sbjct: 1649 RMSMVVSGLTPEEFMLVYKFARKHHITLTNLITEETTHVVMKTDAEFVCERTLKYFLGIAGGKWVVSYFWVTQSIKEGKMLNEHDFEVRGDVVNGRNHQGPKRAR---ESQDRKIFRGLDICCYGPFTNMPTDQLEWMVQLCGASVV--KELS----SFTLGTGVHPIVVV 1810
BLAST of g.barbadense_cottongen_reftransV1_0098060 vs. ExPASy Swiss-Prot
Match: BRCA1_MACMU (Breast cancer type 1 susceptibility protein homolog OS=Macaca mulatta GN=BRCA1 PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.714e-11 Identity = 48/171 (28.07%), Postives = 85/171 (49.71%), Query Frame = 2 Query: 2543 KLVLCCSGLTVEEKEIMSEFEKLAGVTVLKRWDSNITHIIASTDENGACKRTLKILMGILEGKWILNIKWVKACIKAMKLVDELKYEITIDVHGIRD--GPRLGRLRLQNKQPKLFDGCKFYIMGDFEPSYKGDLQDVLIAAGGTILHRKPISGDPGARLLGSPAFPIFII 3049 ++ L SGLT EE ++ +F + + + TH++ TD C+RTLK +GI GKW+++ WV IK K+++E +E+ DV R+ GP+ R ++ K+F G + G F L+ ++ G +++ K +S + LG+ PI ++ Sbjct: 1649 RMSLVVSGLTPEEFMLVYKFARRYHIALTNLISEETTHVVMKTDAEFVCERTLKYFLGIAGGKWVVSYFWVTQSIKERKMLNEHDFEVRGDVVNGRNHQGPKRAR---ESPDRKIFRGLEICCYGPFTNMPTDQLEWMVQLCGASVV--KELS----SFTLGTGFHPIVVV 1810
BLAST of g.barbadense_cottongen_reftransV1_0098060 vs. ExPASy Swiss-Prot
Match: BRCA1_CANFA (Breast cancer type 1 susceptibility protein homolog OS=Canis familiaris GN=BRCA1 PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.268e-11 Identity = 40/129 (31.01%), Postives = 68/129 (52.71%), Query Frame = 2 Query: 2543 KLVLCCSGLTVEEKEIMSEFEKLAGVTVLKRWDSNITHIIASTDENGACKRTLKILMGILEGKWILNIKWVKACIKAMKLVDELKYEITIDVHGIRD--GPRLGR--LRLQNKQPKLFDGCKFYIMGDF 2917 ++ + SGLT +E ++ +F + +++ TH+I TD C+RTLK +GI GKW+++ WV IK K++DE +E+ DV R+ GP+ R +++ K+F G + G F Sbjct: 1652 RISMVASGLTPKEFMLVHKFARKHHISLTNLISEETTHVIMKTDAEFVCERTLKYFLGIAGGKWVVSYFWVTQSIKERKILDEHDFEVRGDVVNGRNHQGPKRARESQDRESQDRKIFRGLEICCYGPF 1780
BLAST of g.barbadense_cottongen_reftransV1_0098060 vs. ExPASy Swiss-Prot
Match: TRX_DROME (Histone-lysine N-methyltransferase trithorax OS=Drosophila melanogaster GN=trx PE=1 SV=4) HSP 1 Score: 68.5514 bits (166), Expect = 3.873e-10 Identity = 56/177 (31.64%), Postives = 85/177 (48.02%), Query Frame = 2 Query: 1868 EDQQQQGGNANISLERVSEKVHGRTTVGNSES-SIVKKLPLANGVALHKCETITIKIQCAFCLSMEETEASGEMVHYYEGSSVPLDYNGGSKVIHSHKNCTEWAPNVYFENDKAI-NLEAELSRSRKIKCSCCGLKGAALGCYEKSCRKTFHVPCAKLVSQCRWDVDNFVILCPLHA 2392 ED Q GG VS V+ + +ES S V +PL C I +++ CL + SGE + G L Y G +H+ NC W+ V+ E D ++ N+ + ++R R IKC+ CG +GA +GC +SC + +H PCA+ + C + D + CP HA Sbjct: 1685 EDLQDTGG--------VSASVYNEHSTSQAESRSGVLDIPLEEVDDFGSC-GIKMRLDTRMCLFCRK---SGEGL---SGEEARLLYCGHDCWVHT--NCAMWSAEVFEEIDGSLQNVHSAVARGRMIKCTVCGNRGATVGCNVRSCGEHYHYPCARSI-DCAFLTDK-SMYCPAHA 1842
BLAST of g.barbadense_cottongen_reftransV1_0098060 vs. ExPASy Swiss-Prot
Match: TRX_DROVI (Histone-lysine N-methyltransferase trithorax OS=Drosophila virilis GN=trx PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 4.672e-10 Identity = 33/85 (38.82%), Postives = 51/85 (60.00%), Query Frame = 2 Query: 2153 HKNCTEWAPNVYFENDKAI-NLEAELSRSRKIKCSCCGLKGAALGCYEKSCRKTFHVPCAKLVSQCRWDVDNFVILCPLHASSKL 2404 H NC W+ V+ E D ++ N+ + ++R R IKC+ CG +GA +GC KSC + +H PCA+ + C + D + CP HA + L Sbjct: 1738 HINCAMWSAEVFEEIDGSLQNVHSAVARGRMIKCTVCGNRGATVGCNVKSCGEHYHYPCARTID-CAFLTDK-SMYCPAHARNAL 1820
BLAST of g.barbadense_cottongen_reftransV1_0098060 vs. ExPASy Swiss-Prot
Match: TCF20_MOUSE (Transcription factor 20 OS=Mus musculus GN=Tcf20 PE=1 SV=3) HSP 1 Score: 65.855 bits (159), Expect = 2.774e-9 Identity = 34/93 (36.56%), Postives = 47/93 (50.54%), Query Frame = 2 Query: 2111 VPLDYNGGSKVIHSHKNCTEWAPNVYFENDKAINLEAELSRSRKIKCSCCGLKGAALGCYEKSCRKTFHVPCAKLVSQCRWDVDNFVILCPLH 2389 +PLD N H+ C WA +Y + L+ L +R++KCS C GA LGCY K C +H PCA + + C +NF + CP H Sbjct: 1872 LPLDSN----EFWVHEGCILWANGIYLVCGRLYGLQEALEIAREMKCSHCQEAGATLGCYNKGCSFRYHYPCA-IDADCLLHEENFSVRCPKH 1959
BLAST of g.barbadense_cottongen_reftransV1_0098060 vs. ExPASy Swiss-Prot
Match: TCF20_HUMAN (Transcription factor 20 OS=Homo sapiens GN=TCF20 PE=1 SV=3) HSP 1 Score: 65.855 bits (159), Expect = 2.887e-9 Identity = 40/121 (33.06%), Postives = 52/121 (42.98%), Query Frame = 2 Query: 2066 TEASGEMVHYYEGSSVPLDYNGG-------------SKVIHSHKNCTEWAPNVYFENDKAINLEAELSRSRKIKCSCCGLKGAALGCYEKSCRKTFHVPCAKLVSQCRWDVDNFVILCPLH 2389 TE S E SVP GG S H+ C WA +Y + L+ L +R++KCS C GA LGCY K C +H PCA + + C +NF + CP H Sbjct: 1813 TEGSSEKTVLDSKPSVPTTSEGGPELELQIPELPLDSNEFWVHEGCILWANGIYLVCGRLYGLQEALEIAREMKCSHCQEAGATLGCYNKGCSFRYHYPCA-IDADCLLHEENFSVRCPKH 1932
BLAST of g.barbadense_cottongen_reftransV1_0098060 vs. ExPASy Swiss-Prot
Match: PHF11_HUMAN (PHD finger protein 11 OS=Homo sapiens GN=PHF11 PE=1 SV=3) HSP 1 Score: 57.3806 bits (137), Expect = 3.388e-7 Identity = 37/135 (27.41%), Postives = 67/135 (49.63%), Query Frame = 2 Query: 2123 YNGGSKVIHSHKNCTEWAPNVY-------FENDKAINLEA---ELSRSRKIKCSCCGLKGAALGCYEKSCRKTFHVPCAK---LVSQCRWDVDNFVILCPLHASSKLPNEKSESQGIRKRRNLRGQLLIHHNEIP 2488 Y S+ I +H+NC ++ + D++ ++E+ E+ R RK+KC C +GA +GC K+C K +H CAK V Q + +LC HA + + ++ G++++R + L +H + P Sbjct: 58 YFAQSENIAAHENCLLYSSGLVECEDQDPLNPDRSFDVESVKKEIQRGRKLKCKFCHKRGATVGCDLKNCNKNYHFFCAKKDDAVPQSDGVRGIYKLLCQQHAQFPIIAQSAKFSGVKRKRGRKKPLSGNHVQPP 192
BLAST of g.barbadense_cottongen_reftransV1_0098060 vs. ExPASy Swiss-Prot
Match: KMT2B_MOUSE (Histone-lysine N-methyltransferase 2B OS=Mus musculus GN=Kmt2b PE=1 SV=3) HSP 1 Score: 58.151 bits (139), Expect = 5.520e-7 Identity = 36/119 (30.25%), Postives = 56/119 (47.06%), Query Frame = 2 Query: 2036 QCAFCLSMEETEASGEMVHYYEGSSVPLDYNGGSKVIHSHKNCTEWAPNVYFENDKAI-NLEAELSRSRKIKCSCCGLKGAALGCYEKSCRKTFHVPCAKLVSQCRWDVDNFVILCPLH 2389 QCA CL + ++ Y G + +H NC W+ V+ END ++ N+ A ++R R+++C C GA +GC SC FH CA+ S C + D+ + C H Sbjct: 1586 QCALCLKYGDADSKEAGRLLYIGQNE-----------WTHVNCAIWSAEVFEENDGSLKNVHAAVARGRQMRCELCLKPGATVGCCLSSCLSNFHFMCAR-ASYCIFQ-DDKKVFCQKH 1691
BLAST of g.barbadense_cottongen_reftransV1_0098060 vs. ExPASy TrEMBL
Match: V7BPN4_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G167200g PE=4 SV=1) HSP 1 Score: 535.028 bits (1377), Expect = 2.600e-166 Identity = 255/416 (61.30%), Postives = 312/416 (75.00%), Query Frame = 2 Query: 1955 SESSIVKKLPLANGVALHKCETITIKIQCAFCLSMEETEASGEMVHYYEGSSVPLDYNGGSKVIHSHKNCTEWAPNVYFENDKAINLEAELSRSRKIKCSCCGLKGAALGCYEKSCRKTFHVPCAKLVSQCRWDVDNFVILCPLHASSKLPNEKSESQGIRKRRNLRGQLLIHHNEIPINDEVSVQKKWNTCESGNKLVLCCSGLTVEEKEIMSEFEKLAGVTVLKRWDSNITHIIASTDENGACKRTLKILMGILEGKWILNIKWVKACIKAMKLVDELKYEITIDVHGIRDGPRLGRLRLQNKQPKLFDGCKFYIMGDFEPSYKGDLQDVLIAAGGTILHRKPISGDPGARLLGSPAFPIFIIYSVELPVKCDPSKKHMILSRRQLNAEALASSTGAKAVSNSWVLSSISACKL 3202 +++S K L + L KCE++ QC FCLS EE+E SG MVHY +G VP DY GG KV H H+NCTEWAPNVYF+ D AINLEAE+SRSR+I+CS CGLKGAALGCYEKSCR++FHVPCAK S CRWD NFV+LCPLHASS LP E S SQ R+ +G N P D + ++ S K+VLCCS L+V+EKEI+S+FE ++ VTVLK WDS++TH+IAST+ENGAC+RTLK+LMGILEGKWIL ++W+KAC+K M V E +YEI +DVHGIRDGPRLGRLR+ NKQPKLFDG KFY MGDF PSYKG LQD+++AAGG ILHRKP+SGD + LL + + IIYS+ELP KC PS I +R +AE LASSTG+K +N+W+L+SI+ACKL Sbjct: 691 NDASKEKHCSLTDKTVLRKCESLVKSYQCLFCLSSEESEVSGPMVHYLDGKPVPADYEGGFKVTHCHRNCTEWAPNVYFDGDNAINLEAEISRSRRIRCSFCGLKGAALGCYEKSCRRSFHVPCAKWTSLCRWDTQNFVMLCPLHASSMLPCEGSGSQ----ERSKKGPGRDGKNHGPSLD--TTRQTRADHRSYKKIVLCCSALSVQEKEIVSKFESVSKVTVLKNWDSSVTHVIASTEENGACRRTLKVLMGILEGKWILKVEWIKACMKEMNPVGEERYEINVDVHGIRDGPRLGRLRVLNKQPKLFDGYKFYFMGDFIPSYKGYLQDLVVAAGGIILHRKPVSGDQKSMLLDTHPYQTLIIYSLELPDKCKPSNTDTICRQRCHDAEVLASSTGSKVATNTWILNSIAACKL 1100 HSP 2 Score: 219.935 bits (559), Expect = 2.998e-65 Identity = 133/269 (49.44%), Postives = 161/269 (59.85%), Query Frame = 2 Query: 329 CILKSMKSGSDCPVCKVPCRRREVRPAPHMDNLVSIYKSMEVASGFNIFVTQDAPLDTSADSGKRVKNDLNCCERMDNQGANKGR------------GSREAKSTETSDPISVKPSFPTNKRVQVPQYPLSETSMLPEKNGGGLIEVTEDESKMSSDILKENNLG---EKGEQILSPFFWLREE-DVERPSQLSDGDQCLYITPPGLPSFSDMKDSDDEGFSKEEVHGNRDH---LNLFDSEMFEWTQGACSPELLSSPDKMQVADTYE 1078 CI+KSMKS CPVCK+P RREVRPAPHMDNLVSIYK+MEVASG NIFVTQ+ +D K+ + + + +++ G++KG + E+S KPSFP KRV VPQ LSET M K G L E +++ + + E+ EK +LSPFFWLREE D E SQ +D DQ + + P PSFSD+KDSDDE S R H +NLFDSEMFEWTQ CSPEL SSP KMQV DTYE Sbjct: 36 CIVKSMKSAFACPVCKIPFTRREVRPAPHMDNLVSIYKNMEVASGINIFVTQNVSQGKLSDVEKQCEGNAD-SGKVEAGGSHKGHVQEKKTRKIKKVKKTVQTNMESSGSGFAKPSFPAKKRVLVPQNILSETPMKNLKLGDSLNEFNKEKEGVEKVSVMESERPLQIEKSVPVLSPFFWLREEKDGETLSQPADEDQIIDCSTPNPPSFSDLKDSDDEHTSNVAPFDERQHQISVNLFDSEMFEWTQRPCSPELFSSPSKMQVMDTYE 303 HSP 3 Score: 59.3066 bits (142), Expect = 2.998e-65 Identity = 27/36 (75.00%), Postives = 31/36 (86.11%), Query Frame = 3 Query: 102 MGDPSHLEKMGRELKCPICLSLLNSAVSLTCNHVFC 209 MGD LE+MG+ELKCPIC SL +SAVSLTCNH+FC Sbjct: 1 MGD---LERMGKELKCPICWSLFDSAVSLTCNHLFC 33
BLAST of g.barbadense_cottongen_reftransV1_0098060 vs. ExPASy TrEMBL
Match: V7BSD2_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G167200g PE=4 SV=1) HSP 1 Score: 535.028 bits (1377), Expect = 2.648e-166 Identity = 255/416 (61.30%), Postives = 312/416 (75.00%), Query Frame = 2 Query: 1955 SESSIVKKLPLANGVALHKCETITIKIQCAFCLSMEETEASGEMVHYYEGSSVPLDYNGGSKVIHSHKNCTEWAPNVYFENDKAINLEAELSRSRKIKCSCCGLKGAALGCYEKSCRKTFHVPCAKLVSQCRWDVDNFVILCPLHASSKLPNEKSESQGIRKRRNLRGQLLIHHNEIPINDEVSVQKKWNTCESGNKLVLCCSGLTVEEKEIMSEFEKLAGVTVLKRWDSNITHIIASTDENGACKRTLKILMGILEGKWILNIKWVKACIKAMKLVDELKYEITIDVHGIRDGPRLGRLRLQNKQPKLFDGCKFYIMGDFEPSYKGDLQDVLIAAGGTILHRKPISGDPGARLLGSPAFPIFIIYSVELPVKCDPSKKHMILSRRQLNAEALASSTGAKAVSNSWVLSSISACKL 3202 +++S K L + L KCE++ QC FCLS EE+E SG MVHY +G VP DY GG KV H H+NCTEWAPNVYF+ D AINLEAE+SRSR+I+CS CGLKGAALGCYEKSCR++FHVPCAK S CRWD NFV+LCPLHASS LP E S SQ R+ +G N P D + ++ S K+VLCCS L+V+EKEI+S+FE ++ VTVLK WDS++TH+IAST+ENGAC+RTLK+LMGILEGKWIL ++W+KAC+K M V E +YEI +DVHGIRDGPRLGRLR+ NKQPKLFDG KFY MGDF PSYKG LQD+++AAGG ILHRKP+SGD + LL + + IIYS+ELP KC PS I +R +AE LASSTG+K +N+W+L+SI+ACKL Sbjct: 693 NDASKEKHCSLTDKTVLRKCESLVKSYQCLFCLSSEESEVSGPMVHYLDGKPVPADYEGGFKVTHCHRNCTEWAPNVYFDGDNAINLEAEISRSRRIRCSFCGLKGAALGCYEKSCRRSFHVPCAKWTSLCRWDTQNFVMLCPLHASSMLPCEGSGSQ----ERSKKGPGRDGKNHGPSLD--TTRQTRADHRSYKKIVLCCSALSVQEKEIVSKFESVSKVTVLKNWDSSVTHVIASTEENGACRRTLKVLMGILEGKWILKVEWIKACMKEMNPVGEERYEINVDVHGIRDGPRLGRLRVLNKQPKLFDGYKFYFMGDFIPSYKGYLQDLVVAAGGIILHRKPVSGDQKSMLLDTHPYQTLIIYSLELPDKCKPSNTDTICRQRCHDAEVLASSTGSKVATNTWILNSIAACKL 1102 HSP 2 Score: 215.312 bits (547), Expect = 8.992e-64 Identity = 133/271 (49.08%), Postives = 161/271 (59.41%), Query Frame = 2 Query: 329 CILKSMKSGSDCPVCKVPCRRREVRPAPHMDNLVSIYKSMEVASGFNIFVTQDAPLDTSADSGKRVKNDLNCCERMDNQGANKGR------------GSREAKSTETSDPISVKPSFPTNKRVQVPQYPLSETSMLPEKNGGGLIEVTEDESKMSSDILKENNLG---EKGEQILSPFFWLREE-DVERPSQLSDGDQCLYITPPGLPSFSDMKDSDDEGFSKEEVHGNRDH---LNLFDSEMFEWTQGACSPELLSSPDKM--QVADTYE 1078 CI+KSMKS CPVCK+P RREVRPAPHMDNLVSIYK+MEVASG NIFVTQ+ +D K+ + + + +++ G++KG + E+S KPSFP KRV VPQ LSET M K G L E +++ + + E+ EK +LSPFFWLREE D E SQ +D DQ + + P PSFSD+KDSDDE S R H +NLFDSEMFEWTQ CSPEL SSP KM QV DTYE Sbjct: 36 CIVKSMKSAFACPVCKIPFTRREVRPAPHMDNLVSIYKNMEVASGINIFVTQNVSQGKLSDVEKQCEGNAD-SGKVEAGGSHKGHVQEKKTRKIKKVKKTVQTNMESSGSGFAKPSFPAKKRVLVPQNILSETPMKNLKLGDSLNEFNKEKEGVEKVSVMESERPLQIEKSVPVLSPFFWLREEKDGETLSQPADEDQIIDCSTPNPPSFSDLKDSDDEHTSNVAPFDERQHQISVNLFDSEMFEWTQRPCSPELFSSPSKMQLQVMDTYE 305 HSP 3 Score: 59.6918 bits (143), Expect = 8.992e-64 Identity = 27/36 (75.00%), Postives = 31/36 (86.11%), Query Frame = 3 Query: 102 MGDPSHLEKMGRELKCPICLSLLNSAVSLTCNHVFC 209 MGD LE+MG+ELKCPIC SL +SAVSLTCNH+FC Sbjct: 1 MGD---LERMGKELKCPICWSLFDSAVSLTCNHLFC 33
BLAST of g.barbadense_cottongen_reftransV1_0098060 vs. ExPASy TrEMBL
Match: K7MAH0_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 537.724 bits (1384), Expect = 3.426e-164 Identity = 257/419 (61.34%), Postives = 314/419 (74.94%), Query Frame = 2 Query: 1955 SESSIVKKLPLANGVALHKCETITIKIQCAFCLSMEETEASGEMVHYYEGSSVPLDYNGGSKVIHSHKNCTEWAPNVYFENDKAINLEAELSRSRKIKCSCCGLKGAALGCYEKSCRKTFHVPCAKLVSQCRWDVDNFVILCPLHASSKLPNEKSESQGIRKR---RNLRGQLLIHHNEIPINDEVSVQKKWNTCESGNKLVLCCSGLTVEEKEIMSEFEKLAGVTVLKRWDSNITHIIASTDENGACKRTLKILMGILEGKWILNIKWVKACIKAMKLVDELKYEITIDVHGIRDGPRLGRLRLQNKQPKLFDGCKFYIMGDFEPSYKGDLQDVLIAAGGTILHRKPISGDPGARLLGSPAFPIFIIYSVELPVKCDPSKKHMILSRRQLNAEALASSTGAKAVSNSWVLSSISACKL 3202 +++S K PL + AL KCE+ K QC FCLS EE+E SG MVHY +G V DY GGSKV H H+NCTEWAPNVYF+ D AINLEAE+SRSR+IKCS CGLKGAALGCYEKSCR++FHVPCA SQCRWD NFV+LCPLHASS LP E S SQ K+ + L H N + + + K+VLCCS L+V+E+E++SEFE+++ VLK WDS++TH+IASTDENGAC+RTLK+L+GILEGKWILNI+W+KAC+K M VDE +YEI +D+HGIRDGPRLGRLR+ NKQPKLF G KFY+MGDF PSYKG LQD+L+AAGG ILHRKP+SGD + + + IIYS+ELP KC P KK I S+R+ +AE LASSTG+K SN+W+L+SI+ACKL Sbjct: 1012 NDTSKEKHCPLMDQTALRKCESHVTKYQCIFCLSSEESETSGPMVHYLDGRPVTADYEGGSKVTHCHRNCTEWAPNVYFDGDNAINLEAEISRSRRIKCSFCGLKGAALGCYEKSCRRSFHVPCANWTSQCRWDTQNFVMLCPLHASSMLPCEGSGSQKRSKKCAASEGKNHGLKHDT---TNQSRAAHRSYK------KIVLCCSALSVQEREVVSEFERVSKAAVLKNWDSSVTHVIASTDENGACRRTLKVLLGILEGKWILNIEWIKACMKEMGPVDEERYEINVDIHGIRDGPRLGRLRVLNKQPKLFYGYKFYVMGDFIPSYKGYLQDLLVAAGGIILHRKPVSGDQESTSPDTHPYQTLIIYSLELPDKCKPLKKDTICSQRRHDAEVLASSTGSKVASNTWILNSIAACKL 1421 HSP 2 Score: 233.032 bits (593), Expect = 2.004e-68 Identity = 138/270 (51.11%), Postives = 167/270 (61.85%), Query Frame = 2 Query: 329 CILKSMKSGSDCPVCKVPCRRREVRPAPHMDNLVSIYKSMEVASGFNIFVTQDAPLDTSADSGKRVKNDLNCCERMDNQGANKGRGSREAK------------STETSDPISVKPSFPTNKRVQVPQYPLSETSMLPEKNGGGLIEVTEDESKMSSDILKENNL---GEKGEQILSPFFWLREE-DVERPSQLSDGDQCLYITPPGLPSFSDMKDSDDEGFSK----EEVHGNRDHLNLFDSEMFEWTQGACSPELLSSPDKMQVADTYE 1078 C+ KSMKS S CPVCK+P RREVRPAPHMDNLVSIYK+ME ASG NIF TQ+AP+ +D K+ + D N +M+ G + GR + S E+S KPSFP KRVQVPQ LSET M K G L E+ +++ + E+ EK +LSPFFWLREE D ER SQ +D D+ + + P PSFSD+KDSDDE S +EV N+ +NLFDSEMFEWTQ C+PEL SSP KMQV DTYE Sbjct: 477 CVFKSMKSASACPVCKIPFTRREVRPAPHMDNLVSIYKNMEAASGVNIFETQNAPVTNLSDGEKQCEVDAN-SGKMEAGGTHTGRPREKKTRKKKESKKTVQASMESSGSDFAKPSFPAKKRVQVPQNLLSETPMKSLKIGVSLSEINKEKEGTEKVPVMESERPLQREKDNPVLSPFFWLREEKDGERLSQQTDDDEIIDGSTPNPPSFSDLKDSDDEIPSNVAPMDEVQ-NKGSVNLFDSEMFEWTQRPCTPELFSSPSKMQVMDTYE 744 HSP 3 Score: 56.9954 bits (136), Expect = 2.004e-68 Identity = 27/36 (75.00%), Postives = 30/36 (83.33%), Query Frame = 3 Query: 102 MGDPSHLEKMGRELKCPICLSLLNSAVSLTCNHVFC 209 MGD LE+M REL CPIC SLL+SAVSLTCNH+FC Sbjct: 442 MGD---LERMARELICPICWSLLDSAVSLTCNHLFC 474
BLAST of g.barbadense_cottongen_reftransV1_0098060 vs. ExPASy TrEMBL
Match: K7MAG9_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 537.724 bits (1384), Expect = 3.599e-164 Identity = 257/419 (61.34%), Postives = 314/419 (74.94%), Query Frame = 2 Query: 1955 SESSIVKKLPLANGVALHKCETITIKIQCAFCLSMEETEASGEMVHYYEGSSVPLDYNGGSKVIHSHKNCTEWAPNVYFENDKAINLEAELSRSRKIKCSCCGLKGAALGCYEKSCRKTFHVPCAKLVSQCRWDVDNFVILCPLHASSKLPNEKSESQGIRKR---RNLRGQLLIHHNEIPINDEVSVQKKWNTCESGNKLVLCCSGLTVEEKEIMSEFEKLAGVTVLKRWDSNITHIIASTDENGACKRTLKILMGILEGKWILNIKWVKACIKAMKLVDELKYEITIDVHGIRDGPRLGRLRLQNKQPKLFDGCKFYIMGDFEPSYKGDLQDVLIAAGGTILHRKPISGDPGARLLGSPAFPIFIIYSVELPVKCDPSKKHMILSRRQLNAEALASSTGAKAVSNSWVLSSISACKL 3202 +++S K PL + AL KCE+ K QC FCLS EE+E SG MVHY +G V DY GGSKV H H+NCTEWAPNVYF+ D AINLEAE+SRSR+IKCS CGLKGAALGCYEKSCR++FHVPCA SQCRWD NFV+LCPLHASS LP E S SQ K+ + L H N + + + K+VLCCS L+V+E+E++SEFE+++ VLK WDS++TH+IASTDENGAC+RTLK+L+GILEGKWILNI+W+KAC+K M VDE +YEI +D+HGIRDGPRLGRLR+ NKQPKLF G KFY+MGDF PSYKG LQD+L+AAGG ILHRKP+SGD + + + IIYS+ELP KC P KK I S+R+ +AE LASSTG+K SN+W+L+SI+ACKL Sbjct: 1014 NDTSKEKHCPLMDQTALRKCESHVTKYQCIFCLSSEESETSGPMVHYLDGRPVTADYEGGSKVTHCHRNCTEWAPNVYFDGDNAINLEAEISRSRRIKCSFCGLKGAALGCYEKSCRRSFHVPCANWTSQCRWDTQNFVMLCPLHASSMLPCEGSGSQKRSKKCAASEGKNHGLKHDT---TNQSRAAHRSYK------KIVLCCSALSVQEREVVSEFERVSKAAVLKNWDSSVTHVIASTDENGACRRTLKVLLGILEGKWILNIEWIKACMKEMGPVDEERYEINVDIHGIRDGPRLGRLRVLNKQPKLFYGYKFYVMGDFIPSYKGYLQDLLVAAGGIILHRKPVSGDQESTSPDTHPYQTLIIYSLELPDKCKPLKKDTICSQRRHDAEVLASSTGSKVASNTWILNSIAACKL 1423 HSP 2 Score: 228.024 bits (580), Expect = 6.590e-67 Identity = 138/272 (50.74%), Postives = 167/272 (61.40%), Query Frame = 2 Query: 329 CILKSMKSGSDCPVCKVPCRRREVRPAPHMDNLVSIYKSMEVASGFNIFVTQDAPLDTSADSGKRVKNDLNCCERMDNQGANKGRGSREAK------------STETSDPISVKPSFPTNKRVQVPQYPLSETSMLPEKNGGGLIEVTEDESKMSSDILKENNL---GEKGEQILSPFFWLREE-DVERPSQLSDGDQCLYITPPGLPSFSDMKDSDDEGFSK----EEVHGNRDHLNLFDSEMFEWTQGACSPELLSSPDKM--QVADTYE 1078 C+ KSMKS S CPVCK+P RREVRPAPHMDNLVSIYK+ME ASG NIF TQ+AP+ +D K+ + D N +M+ G + GR + S E+S KPSFP KRVQVPQ LSET M K G L E+ +++ + E+ EK +LSPFFWLREE D ER SQ +D D+ + + P PSFSD+KDSDDE S +EV N+ +NLFDSEMFEWTQ C+PEL SSP KM QV DTYE Sbjct: 477 CVFKSMKSASACPVCKIPFTRREVRPAPHMDNLVSIYKNMEAASGVNIFETQNAPVTNLSDGEKQCEVDAN-SGKMEAGGTHTGRPREKKTRKKKESKKTVQASMESSGSDFAKPSFPAKKRVQVPQNLLSETPMKSLKIGVSLSEINKEKEGTEKVPVMESERPLQREKDNPVLSPFFWLREEKDGERLSQQTDDDEIIDGSTPNPPSFSDLKDSDDEIPSNVAPMDEVQ-NKGSVNLFDSEMFEWTQRPCTPELFSSPSKMQLQVMDTYE 746 HSP 3 Score: 56.9954 bits (136), Expect = 6.590e-67 Identity = 27/36 (75.00%), Postives = 30/36 (83.33%), Query Frame = 3 Query: 102 MGDPSHLEKMGRELKCPICLSLLNSAVSLTCNHVFC 209 MGD LE+M REL CPIC SLL+SAVSLTCNH+FC Sbjct: 442 MGD---LERMARELICPICWSLLDSAVSLTCNHLFC 474
BLAST of g.barbadense_cottongen_reftransV1_0098060 vs. ExPASy TrEMBL
Match: A0A059CCE7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D00242 PE=4 SV=1) HSP 1 Score: 511.531 bits (1316), Expect = 6.405e-164 Identity = 250/417 (59.95%), Postives = 315/417 (75.54%), Query Frame = 2 Query: 1955 SESSIVKKLPLANGVALHKCETITIKIQCAFCLSMEETEASGEMVHYYEGSSVPLDYNGGSKVIHSHKNCTEWAPNVYFENDKAINLEAELSRSRKIKCSCCGLKGAALGCYEKSCRKTFHVPCAKLVSQCRWDVDNFVILCPLHASSKLPNEKSESQGIR-KRRNLRGQLLIHHNEIPINDEVSVQKKWNTCESGNKLVLCCSGLTVEEKEIMSEFEKLAGVTVLKRWDSNITHIIASTDENGACKRTLKILMGILEGKWILNIKWVKACIKAMKLVDELKYEITIDVHGIRDGPRLGRLRLQNKQPKLFDGCKFYIMGDFEPSYKGDLQDVLIAAGGTILHRKPISGDPGARLLGSPAFPIFIIYSVELPVKCDPSKKHMILSRRQLNAEALASSTGAKAVSNSWVLSSISACKL 3202 SE I +KL ++ + L KC TI +QCAFC S E +EASGEMVHY G VP DYNGGS++IHSHKNCTEWAPNVYF + KAINLEAE+ RSR+IKC CCG+KGAALGCYEKSCRK+FHV CA ++QCRWD NFV+LCPLH SS+LP E Q ++ + R QL+ H+E + + K C S +K+VLCCS LT E+E +S+F + + TV+++W+ +TH+IASTDENGACKRT K+LMGILEGKWIL+++W+KAC++AM+ ++E +YEI D+HG+R+GP+LGR R+ N QPKLFDG KFY MGDF+PSYKG LQD+++AAGGT+LHRKPI D A L S A FIIYS+E+P KC S+ MI+ RR +AEALA STGAK SNSW+L SI+ACKL Sbjct: 160 SELPIAEKLQDSDEMVLRKCGTIPRDVQCAFCQSSECSEASGEMVHYSNGEPVPADYNGGSRIIHSHKNCTEWAPNVYFVDGKAINLEAEVLRSRRIKCCCCGIKGAALGCYEKSCRKSFHVTCAMKIAQCRWDTVNFVLLCPLHFSSRLPIEIPRPQEMKSSSKEERSQLV--HDENDKEHQHASSSKRIYCGSHDKIVLCCSALTKAEREAVSQFGRASRATVVQKWNPTVTHVIASTDENGACKRTFKVLMGILEGKWILSVEWIKACMEAMEHINEERYEINADIHGMRNGPQLGRQRVINMQPKLFDGLKFYFMGDFDPSYKGYLQDLVVAAGGTVLHRKPIPCDELAPLPPSIA-STFIIYSLEMPDKCGLSRD-MIIKRRLSSAEALARSTGAKVASNSWLLDSIAACKL 572 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0098060 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 22
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BLAST of g.barbadense_cottongen_reftransV1_0098060 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0098060 ID=g.barbadense_cottongen_reftransV1_0098060; Name=g.barbadense_cottongen_reftransV1_0098060; organism=Gossypium barbadense; type=contig; length=3566bpback to top |