g.barbadense_cottongen_reftransV1_0098041, g.barbadense_cottongen_reftransV1_0098041 (contig) Gossypium barbadense
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy Swiss-Prot
Match: RL6_MARHV (50S ribosomal protein L6 OS=Marinobacter hydrocarbonoclasticus (strain ATCC 700491 / DSM 11845 / VT8) GN=rplF PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.257e-17 Identity = 42/89 (47.19%), Postives = 57/89 (64.04%), Query Frame = 1 Query: 1276 FFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTIPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI 1542 + R L++ GVGY RA+A+G+ L L LG+SH VE +P V N V G+DKQ+V Q AA +R+ +PPE YKGKG+ Y DE + Sbjct: 83 WERKLQLTGVGY--RAQAQGKKLNLTLGFSHPVEYELPEGVTAETPSNTEVVIRGIDKQQVGQVAAEIRAFRPPEPYKGKGVRYADEQV 169
BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy Swiss-Prot
Match: RL6_SYNJB (50S ribosomal protein L6 OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) GN=rplF PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.273e-17 Identity = 41/89 (46.07%), Postives = 57/89 (64.04%), Query Frame = 1 Query: 1276 FFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTIPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI 1542 F R L++VGVGY RA +G L L +GYSH VE+ PP +++ NN++ +G DK+ V AA +R+ +PPE YKGKGI Y E + Sbjct: 83 FERRLELVGVGY--RAAIQGSKLVLNVGYSHPVEIPFPPGIQIAVEGNNIIVVSGTDKELVGNTAARIRAVRPPEPYKGKGIRYLGEQV 169
BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy Swiss-Prot
Match: RL6_PARUW (50S ribosomal protein L6 OS=Protochlamydia amoebophila (strain UWE25) GN=rplF PE=3 SV=2) HSP 1 Score: 85.8853 bits (211), Expect = 1.526e-17 Identity = 44/89 (49.44%), Postives = 59/89 (66.29%), Query Frame = 1 Query: 1276 FFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTIPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI 1542 F + L+++GVGY RA +G LL L+LG+SH +L IP + V KN ++ +G DK V QFAATVRS +PPE Y+GKGI Y E + Sbjct: 83 FEKKLEMIGVGY--RAAVQGDLLDLQLGFSHPCKLPIPKGLAVKVDKNTLITISGFDKHLVGQFAATVRSQRPPEPYQGKGIRYAGEFV 169
BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy Swiss-Prot
Match: RL6_ANAVT (50S ribosomal protein L6 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rplF PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 1.656e-17 Identity = 44/105 (41.90%), Postives = 64/105 (60.95%), Query Frame = 1 Query: 1237 ITRLLILIIMEA---KFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTIPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI 1542 ++R L+ ++E F R L+I GVGY RA+ +GR L L +GYSH+V++ P ++ N V +G DK+ V AA +R+ +PPE YKGKGI Y EV+ Sbjct: 67 LSRTLVANMVEGVSQGFQRRLEIQGVGY--RAQVQGRNLILNMGYSHQVQIEPPDGIQFAVENNTNVIVSGYDKEIVGNTAAKIRAVRPPEPYKGKGIRYAGEVV 169
BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy Swiss-Prot
Match: RL6_RHORT (50S ribosomal protein L6 OS=Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG 4362 / NCIB 8255 / S1) GN=rplF PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 1.750e-17 Identity = 42/89 (47.19%), Postives = 60/89 (67.42%), Query Frame = 1 Query: 1276 FFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTIPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI 1542 F R L++VGVGYKA A+G++L L LG+SH+V+ IP +++ N + +G+DKQRV Q A+ +RS + PE YKGKG+ Y E I Sbjct: 83 FSRKLELVGVGYKA--AAQGKVLKLSLGFSHDVDFPIPEDLKITTPAPNQIEISGVDKQRVGQIASEIRSYRSPEPYKGKGVKYAGEQI 169
BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy TrEMBL
Match: A0A0D2S0T6_GOSRA (Uncharacterized protein (Fragment) OS=Gossypium raimondii GN=B456_006G223700 PE=3 SV=1) HSP 1 Score: 198.364 bits (503), Expect = 5.568e-56 Identity = 96/99 (96.97%), Postives = 97/99 (97.98%), Query Frame = 1 Query: 1246 LLILIIMEAKFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTIPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI 1542 LLILIIMEAKFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVEL +PPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMY DEVI Sbjct: 42 LLILIIMEAKFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELPVPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYIDEVI 140
BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy TrEMBL
Match: A0A061ES89_THECC (Ribosomal protein L6 family protein OS=Theobroma cacao GN=TCM_020231 PE=3 SV=1) HSP 1 Score: 190.66 bits (483), Expect = 8.045e-54 Identity = 91/93 (97.85%), Postives = 92/93 (98.92%), Query Frame = 1 Query: 1264 MEAKFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTIPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI 1542 MEAKFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELT+PPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMY DEVI Sbjct: 1 MEAKFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYIDEVI 93
BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy TrEMBL
Match: A0A0B0N8R6_GOSAR (50S ribosomal L6 OS=Gossypium arboreum GN=F383_04452 PE=3 SV=1) HSP 1 Score: 187.963 bits (476), Expect = 7.078e-53 Identity = 90/93 (96.77%), Postives = 91/93 (97.85%), Query Frame = 1 Query: 1264 MEAKFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTIPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI 1542 MEAKFFRFLKI GVGYKARAEAEGRLLFLKLGYSHEVEL +PPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI Sbjct: 1 MEAKFFRFLKIFGVGYKARAEAEGRLLFLKLGYSHEVELPVPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI 93
BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy TrEMBL
Match: A0A067LIJ8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16278 PE=3 SV=1) HSP 1 Score: 185.652 bits (470), Expect = 4.448e-52 Identity = 87/93 (93.55%), Postives = 92/93 (98.92%), Query Frame = 1 Query: 1264 MEAKFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTIPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI 1542 MEAKFFRFLKIVGVGYKARAE+EGRLL+LKLGYSHEVELT+PPAVRVFCFKNNVVCCTG+DKQRVHQFAA+VRSCKPPEVYKGKGIMY DEVI Sbjct: 1 MEAKFFRFLKIVGVGYKARAESEGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAASVRSCKPPEVYKGKGIMYIDEVI 93
BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy TrEMBL
Match: B9SNA1_RICCO (50S ribosomal protein L6, putative OS=Ricinus communis GN=RCOM_0174250 PE=3 SV=1) HSP 1 Score: 185.652 bits (470), Expect = 4.448e-52 Identity = 87/93 (93.55%), Postives = 92/93 (98.92%), Query Frame = 1 Query: 1264 MEAKFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTIPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI 1542 MEAKFFRFLKIVGVGYKARAE+EGRLL+LKLGYSHEVELT+PPAVRVFCFKNNVVCCTG+DKQRVHQFAA+VRSCKPPEVYKGKGIMY DEVI Sbjct: 1 MEAKFFRFLKIVGVGYKARAESEGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAASVRSCKPPEVYKGKGIMYIDEVI 93
BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy TrEMBL
Match: A0A067LD45_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00217 PE=3 SV=1) HSP 1 Score: 185.652 bits (470), Expect = 5.651e-52 Identity = 87/93 (93.55%), Postives = 92/93 (98.92%), Query Frame = 1 Query: 1264 MEAKFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTIPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI 1542 M+AKFFRFLKIVGVGYKARAEAEGRLL+LKLGYSHEVELT+PPAVRVFCFKNNVVCCTG+DKQRVHQFAA+VRSCKPPEVYKGKGIMY DEVI Sbjct: 1 MDAKFFRFLKIVGVGYKARAEAEGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAASVRSCKPPEVYKGKGIMYIDEVI 93
BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy TrEMBL
Match: K7KX08_SOYBN (Uncharacterized protein OS=Glycine max PE=3 SV=1) HSP 1 Score: 186.422 bits (472), Expect = 6.148e-52 Identity = 87/96 (90.62%), Postives = 93/96 (96.88%), Query Frame = 1 Query: 1255 LIIMEAKFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTIPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI 1542 L +MEAKFFRFLKIVGVGYKARAEA GRLL+LKLGYSHEVELT+PPAVRVFCFKNNV+CCTG+DKQRVHQFAATVR+CKPPEVYKGKGIMY DEVI Sbjct: 21 LALMEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVI 116
BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy TrEMBL
Match: A0A0A0KJ40_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G502670 PE=3 SV=1) HSP 1 Score: 184.882 bits (468), Expect = 1.080e-51 Identity = 87/93 (93.55%), Postives = 90/93 (96.77%), Query Frame = 1 Query: 1264 MEAKFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTIPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI 1542 MEAKFFRFLKIVGVGYKARAEA GRLL+LKLGYSHEVELT+PPAVRVFCFKNNVVCCTG+DKQRVHQFAA VRSCKPPEVYKGKGIMY DEVI Sbjct: 1 MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYVDEVI 93
BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy TrEMBL
Match: A9PDZ0_POPTR (Ribosomal protein L6 OS=Populus trichocarpa GN=POPTR_0007s12890g PE=2 SV=1) HSP 1 Score: 184.496 bits (467), Expect = 1.332e-51 Identity = 88/93 (94.62%), Postives = 91/93 (97.85%), Query Frame = 1 Query: 1264 MEAKFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTIPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI 1542 MEAKFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELT+PPAVRVFCFKNNVVCCTG+DK RVHQFAA+VRSCKPPEVYKGKGIMY DEVI Sbjct: 1 MEAKFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKGRVHQFAASVRSCKPPEVYKGKGIMYIDEVI 93
BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy TrEMBL
Match: I1KDT7_SOYBN (Uncharacterized protein OS=Glycine max PE=3 SV=1) HSP 1 Score: 184.496 bits (467), Expect = 1.471e-51 Identity = 86/93 (92.47%), Postives = 91/93 (97.85%), Query Frame = 1 Query: 1264 MEAKFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTIPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI 1542 MEAKFFRFLKIVGVGYKARAEA GRLL+LKLGYSHEVELT+PPAVRVFCFKNNV+CCTG+DKQRVHQFAATVR+CKPPEVYKGKGIMY DEVI Sbjct: 1 MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVI 93 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 25
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BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0098041 ID=g.barbadense_cottongen_reftransV1_0098041; Name=g.barbadense_cottongen_reftransV1_0098041; organism=Gossypium barbadense; type=contig; length=2028bpback to top |