g.barbadense_cottongen_reftransV1_0098041, g.barbadense_cottongen_reftransV1_0098041 (contig) Gossypium barbadense

Overview


Name	g.barbadense_cottongen_reftransV1_0098041
Unique Name	g.barbadense_cottongen_reftransV1_0098041
Type	contig
Organism	Gossypium barbadense (Sea Island cotton)
Sequence length	2028

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Dt09	chromosome	g.barbadense_cottongen_reftransV1_0098041:1..2028 . Dt09:49338734..49345360 +		n/a

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium barbadense CottonGen RefTrans V1	2016-11-01
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot	2016-11-01
InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1	2016-11-02
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL	2016-11-02

Homology

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy Swiss-Prot
Match: RL6_CARHZ (50S ribosomal protein L6 OS=Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 / Z-2901) GN=rplF PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.117e-18
Identity = 47/105 (44.76%), Postives = 66/105 (62.86%), Query Frame = 1

Query: 1237 ITRLLI---LIIMEAKFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTIPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI 1542
            +TR LI   ++ +   + + L++VGVGY  RA  +GR L L +GYSH VE+  P  + +     N +   G+DK+ V  FAAT+R+ + PE YKGKGI YTDEVI
Sbjct:   67 LTRTLINNMIVGVTNGYQKSLELVGVGY--RAAKQGRKLVLTVGYSHPVEMDPPEGIEIEVPAQNQIIVKGIDKELVGNFAATIRAVREPEPYKGKGIKYTDEVI 169

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy Swiss-Prot
Match: RL6_NITOC (50S ribosomal protein L6 OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=rplF PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.304e-18
Identity = 50/119 (42.02%), Postives = 68/119 (57.14%), Query Frame = 1

Query: 1195 NSKPCIYRIRIA*KITRLLILIIMEA---KFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTIPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI 1542
            ++K    R+      TR LI  +++     F R L++VGVGY  RA+ +GR L L LGYSH VE T P  + +       +   G DKQ+V Q AA +R  +PPE YKGKG+ Y DEV+
Sbjct:   54 SAKSTDKRVNALRGTTRALINNMVQGVSQGFERRLQLVGVGY--RAQLQGRKLVLSLGYSHPVEFTAPEGLTIEVPSPTEIIVKGYDKQQVGQAAANIRRFRPPEPYKGKGVRYADEVV 170

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy Swiss-Prot
Match: RL6_JANSC (50S ribosomal protein L6 OS=Jannaschia sp. (strain CCS1) GN=rplF PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.516e-18
Identity = 45/89 (50.56%), Postives = 56/89 (62.92%), Query Frame = 1

Query: 1276 FFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTIPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI 1542
            F + L+I GVGY  RA+ +G +L L LGYSH+V+ T+P  V V C KN  V   G D+Q V Q AA +R  + PE YKGKGI Y  E I
Sbjct:   83 FKKELEITGVGY--RAQMQGNVLKLSLGYSHDVDFTVPEGVTVTCPKNTEVIIEGNDQQLVGQVAANIREWRAPEPYKGKGIRYKGEYI 169

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy Swiss-Prot
Match: RL6_ERYLH (50S ribosomal protein L6 OS=Erythrobacter litoralis (strain HTCC2594) GN=rplF PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 6.667e-18
Identity = 44/105 (41.90%), Postives = 64/105 (60.95%), Query Frame = 1

Query: 1237 ITRLLILIIMEA---KFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTIPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI 1542
            + R L+  ++E     F + L+I GVGY  RA+A+G+ L L+LGYSH+V++ +P  + V       V  +G+DKQ V Q AA +R  + PE YKGKGI Y  E +
Sbjct:   67 MQRTLVSNLVEGVTEGFSKTLEISGVGY--RAQAQGKTLKLQLGYSHDVDIAVPEGLEVKTPDQTTVIISGIDKQAVGQLAAEIRQWRKPEPYKGKGIKYQGEYV 169

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy Swiss-Prot
Match: RL6_SPHAL (50S ribosomal protein L6 OS=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) GN=rplF PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 6.990e-18
Identity = 41/89 (46.07%), Postives = 57/89 (64.04%), Query Frame = 1

Query: 1276 FFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTIPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI 1542
            F + L+I GVGY  RA A+G+ L L+LGYSH+V+  +P  + +    N  +  +G+DKQ+V Q AA +R  + PE YKGKGI Y  E I
Sbjct:   83 FTKVLEITGVGY--RANAQGKNLKLQLGYSHDVDFAVPDGIEIKTPDNTTIEISGIDKQQVGQVAAEIRRWRKPEPYKGKGIKYRGEYI 169

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy Swiss-Prot
Match: RL6_NATTJ (50S ribosomal protein L6 OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=rplF PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 8.124e-18
Identity = 47/105 (44.76%), Postives = 64/105 (60.95%), Query Frame = 1

Query: 1237 ITRLLILIIMEA---KFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTIPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI 1542
            ++R LI  ++E     F R L+IVGVGY  RA+ +G+ L L +GYSH V +  P  V +   KNN +   G DK+ V Q AA +R+ + PE YKGKGI Y +E I
Sbjct:   67 LSRSLIANMVEGVTNGFERHLEIVGVGY--RAQMQGKNLVLNVGYSHPVTIEPPEGVEIEVPKNNQIIVKGTDKEVVGQVAARIRAVRKPEPYKGKGIKYAEEQI 169

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy Swiss-Prot
Match: RL6_THEAB (50S ribosomal protein L6 OS=Thermosipho africanus (strain TCF52B) GN=rplF PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 9.019e-18
Identity = 42/89 (47.19%), Postives = 58/89 (65.17%), Query Frame = 1

Query: 1276 FFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTIPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI 1542
            F + L+IVG+GY  RA+ +G+ L + LGY+H VE+ IP  V+V     N +  +G+DKQRV Q AA +R  + P VY GKGI Y  EV+
Sbjct:   90 FKKELEIVGIGY--RAQLQGKKLVMNLGYAHPVEMEIPSDVKVEVPSPNKIIVSGIDKQRVGQVAADIRKWREPNVYSGKGIRYVGEVV 176

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy Swiss-Prot
Match: RK6_EMIHU (50S ribosomal protein L6, chloroplastic OS=Emiliania huxleyi GN=rpl6 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 9.237e-18
Identity = 42/89 (47.19%), Postives = 58/89 (65.17%), Query Frame = 1

Query: 1276 FFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTIPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI 1542
            + + L I GVGY  RA+ +G+ L L +GYSH V++  PPA+ V       +  +GL+K+ V +FAA +RS +PPE YKGKGI Y  EVI
Sbjct:   85 WHKKLTIAGVGY--RAQLDGKDLILNMGYSHPVKMVTPPALSVSVESPTSITVSGLEKEAVGEFAAKIRSVRPPEPYKGKGIAYEGEVI 171

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy Swiss-Prot
Match: RL6_WOLSU (50S ribosomal protein L6 OS=Wolinella succinogenes (strain ATCC 29543 / DSM 1740 / LMG 7466 / NCTC 11488 / FDC 602W) GN=rplF PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 9.724e-18
Identity = 46/97 (47.42%), Postives = 61/97 (62.89%), Query Frame = 1

Query: 1252 ILIIMEAKFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTIPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI 1542
            I+I + A F + L+I GVGYKA    +G +L L LG+SH V   IP  V +   KN V+   G DKQ++ Q AA +R  +PPE YKGKG+ Y+DE I
Sbjct:   75 IVIGLSAGFTKQLEINGVGYKA--AVKGSVLELALGFSHPVNYEIPEGVEIAVEKN-VITIKGSDKQQIGQIAAEIREFRPPEPYKGKGVKYSDETI 168

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy Swiss-Prot
Match: RL6_NOSS1 (50S ribosomal protein L6 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=rplF PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 9.760e-18
Identity = 45/105 (42.86%), Postives = 64/105 (60.95%), Query Frame = 1

Query: 1237 ITRLLILIIMEA---KFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTIPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI 1542
            ++R L+  ++E     F R L+I GVGY  RA+ +GR L L +GYSH+V++  P  ++     N  V  +G DK+ V   AA VR+ +PPE YKGKGI Y  EV+
Sbjct:   67 LSRTLVANMVEGVSQGFQRRLEIQGVGY--RAQVQGRNLVLNMGYSHQVQIEPPDGIQFVVENNTNVIVSGYDKEIVGNTAAKVRAVRPPEPYKGKGIRYAGEVV 169

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy TrEMBL
Match: A0A0D2S0T6_GOSRA (Uncharacterized protein (Fragment) OS=Gossypium raimondii GN=B456_006G223700 PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 5.568e-56
Identity = 96/99 (96.97%), Postives = 97/99 (97.98%), Query Frame = 1

Query: 1246 LLILIIMEAKFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTIPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI 1542
            LLILIIMEAKFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVEL +PPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMY DEVI
Sbjct:   42 LLILIIMEAKFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELPVPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYIDEVI 140

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy TrEMBL
Match: A0A061ES89_THECC (Ribosomal protein L6 family protein OS=Theobroma cacao GN=TCM_020231 PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 8.045e-54
Identity = 91/93 (97.85%), Postives = 92/93 (98.92%), Query Frame = 1

Query: 1264 MEAKFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTIPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI 1542
            MEAKFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELT+PPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMY DEVI
Sbjct:    1 MEAKFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYIDEVI 93

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy TrEMBL
Match: A0A0B0N8R6_GOSAR (50S ribosomal L6 OS=Gossypium arboreum GN=F383_04452 PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 7.078e-53
Identity = 90/93 (96.77%), Postives = 91/93 (97.85%), Query Frame = 1

Query: 1264 MEAKFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTIPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI 1542
            MEAKFFRFLKI GVGYKARAEAEGRLLFLKLGYSHEVEL +PPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI
Sbjct:    1 MEAKFFRFLKIFGVGYKARAEAEGRLLFLKLGYSHEVELPVPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI 93

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy TrEMBL
Match: A0A067LIJ8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16278 PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 4.448e-52
Identity = 87/93 (93.55%), Postives = 92/93 (98.92%), Query Frame = 1

Query: 1264 MEAKFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTIPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI 1542
            MEAKFFRFLKIVGVGYKARAE+EGRLL+LKLGYSHEVELT+PPAVRVFCFKNNVVCCTG+DKQRVHQFAA+VRSCKPPEVYKGKGIMY DEVI
Sbjct:    1 MEAKFFRFLKIVGVGYKARAESEGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAASVRSCKPPEVYKGKGIMYIDEVI 93

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy TrEMBL
Match: B9SNA1_RICCO (50S ribosomal protein L6, putative OS=Ricinus communis GN=RCOM_0174250 PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 4.448e-52
Identity = 87/93 (93.55%), Postives = 92/93 (98.92%), Query Frame = 1

Query: 1264 MEAKFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTIPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI 1542
            MEAKFFRFLKIVGVGYKARAE+EGRLL+LKLGYSHEVELT+PPAVRVFCFKNNVVCCTG+DKQRVHQFAA+VRSCKPPEVYKGKGIMY DEVI
Sbjct:    1 MEAKFFRFLKIVGVGYKARAESEGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAASVRSCKPPEVYKGKGIMYIDEVI 93

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy TrEMBL
Match: A0A067LD45_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00217 PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 5.651e-52
Identity = 87/93 (93.55%), Postives = 92/93 (98.92%), Query Frame = 1

Query: 1264 MEAKFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTIPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI 1542
            M+AKFFRFLKIVGVGYKARAEAEGRLL+LKLGYSHEVELT+PPAVRVFCFKNNVVCCTG+DKQRVHQFAA+VRSCKPPEVYKGKGIMY DEVI
Sbjct:    1 MDAKFFRFLKIVGVGYKARAEAEGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAASVRSCKPPEVYKGKGIMYIDEVI 93

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy TrEMBL
Match: K7KX08_SOYBN (Uncharacterized protein OS=Glycine max PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 6.148e-52
Identity = 87/96 (90.62%), Postives = 93/96 (96.88%), Query Frame = 1

Query: 1255 LIIMEAKFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTIPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI 1542
            L +MEAKFFRFLKIVGVGYKARAEA GRLL+LKLGYSHEVELT+PPAVRVFCFKNNV+CCTG+DKQRVHQFAATVR+CKPPEVYKGKGIMY DEVI
Sbjct:   21 LALMEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVI 116

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy TrEMBL
Match: A0A0A0KJ40_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G502670 PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 1.080e-51
Identity = 87/93 (93.55%), Postives = 90/93 (96.77%), Query Frame = 1

Query: 1264 MEAKFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTIPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI 1542
            MEAKFFRFLKIVGVGYKARAEA GRLL+LKLGYSHEVELT+PPAVRVFCFKNNVVCCTG+DKQRVHQFAA VRSCKPPEVYKGKGIMY DEVI
Sbjct:    1 MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYVDEVI 93

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy TrEMBL
Match: A9PDZ0_POPTR (Ribosomal protein L6 OS=Populus trichocarpa GN=POPTR_0007s12890g PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 1.332e-51
Identity = 88/93 (94.62%), Postives = 91/93 (97.85%), Query Frame = 1

Query: 1264 MEAKFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTIPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI 1542
            MEAKFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELT+PPAVRVFCFKNNVVCCTG+DK RVHQFAA+VRSCKPPEVYKGKGIMY DEVI
Sbjct:    1 MEAKFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKGRVHQFAASVRSCKPPEVYKGKGIMYIDEVI 93

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy TrEMBL
Match: I1KDT7_SOYBN (Uncharacterized protein OS=Glycine max PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 1.471e-51
Identity = 86/93 (92.47%), Postives = 91/93 (97.85%), Query Frame = 1

Query: 1264 MEAKFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTIPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI 1542
            MEAKFFRFLKIVGVGYKARAEA GRLL+LKLGYSHEVELT+PPAVRVFCFKNNV+CCTG+DKQRVHQFAATVR+CKPPEVYKGKGIMY DEVI
Sbjct:    1 MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVI 93

The following BLAST results are available for this feature:

BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy Swiss-Prot
BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy TrEMBL

BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 25


Match Name	E-value	Identity	Description
RL6_CARHZ	1.117e-18	44.76	50S ribosomal protein L6 OS=Carboxydothermus hydro...	[more]
RL6_NITOC	2.304e-18	42.02	50S ribosomal protein L6 OS=Nitrosococcus oceani (...	[more]
RL6_JANSC	5.516e-18	50.56	50S ribosomal protein L6 OS=Jannaschia sp. (strain...	[more]
RL6_ERYLH	6.667e-18	41.90	50S ribosomal protein L6 OS=Erythrobacter litorali...	[more]
RL6_SPHAL	6.990e-18	46.07	50S ribosomal protein L6 OS=Sphingopyxis alaskensi...	[more]
RL6_NATTJ	8.124e-18	44.76	50S ribosomal protein L6 OS=Natranaerobius thermop...	[more]
RL6_THEAB	9.019e-18	47.19	50S ribosomal protein L6 OS=Thermosipho africanus ...	[more]
RK6_EMIHU	9.237e-18	47.19	50S ribosomal protein L6, chloroplastic OS=Emilian...	[more]
RL6_WOLSU	9.724e-18	47.42	50S ribosomal protein L6 OS=Wolinella succinogenes...	[more]
RL6_NOSS1	9.760e-18	42.86	50S ribosomal protein L6 OS=Nostoc sp. (strain PCC...	[more]

Pages

BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0D2S0T6_GOSRA	5.568e-56	96.97	Uncharacterized protein (Fragment) OS=Gossypium ra...	[more]
A0A061ES89_THECC	8.045e-54	97.85	Ribosomal protein L6 family protein OS=Theobroma c...	[more]
A0A0B0N8R6_GOSAR	7.078e-53	96.77	50S ribosomal L6 OS=Gossypium arboreum GN=F383_044...	[more]
A0A067LIJ8_JATCU	4.448e-52	93.55	Uncharacterized protein OS=Jatropha curcas GN=JCGZ...	[more]
B9SNA1_RICCO	4.448e-52	93.55	50S ribosomal protein L6, putative OS=Ricinus comm...	[more]
A0A067LD45_JATCU	5.651e-52	93.55	Uncharacterized protein OS=Jatropha curcas GN=JCGZ...	[more]
K7KX08_SOYBN	6.148e-52	90.63	Uncharacterized protein OS=Glycine max PE=3 SV=1	[more]
A0A0A0KJ40_CUCSA	1.080e-51	93.55	Uncharacterized protein OS=Cucumis sativus GN=Csa_...	[more]
A9PDZ0_POPTR	1.332e-51	94.62	Ribosomal protein L6 OS=Populus trichocarpa GN=POP...	[more]
I1KDT7_SOYBN	1.471e-51	92.47	Uncharacterized protein OS=Glycine max PE=3 SV=1	[more]

Pages

InterPro

Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 7..18
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..6
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 58..133
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 19..23
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..23
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 24..38
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 39..57
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..25 score: 0.575

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.barbadense_cottongen_reftransV1_0098041 ID=g.barbadense_cottongen_reftransV1_0098041; Name=g.barbadense_cottongen_reftransV1_0098041; organism=Gossypium barbadense; type=contig; length=2028bp
GTGTATCTAAAAAAATTTCCCTCTTATCTCTCTTAACGCATCCCCGCTGC
CACCACTCTGTCCCAGCTTCCTCCAGTGGCTGATCTAATCCCTTCTTGCA
TTCAAGTTTCCAAGAGACCCAGCAAATTAAATAAGGTAAATATTGAAACC
CTAAACGTATTTTGAGGATTGATTTCTACTTGAGATTTTGAGTTATTTAC
TCTACTATATTTTCTGTTTTCGATCCTACTTCTTGCTACTCTATCTCATC
GATTTTTTTTAAAAGCTACGGGATTAGTTGAAATAGCAGACTATTATCGC
CCTTTTTCTCCTTACACTGCTATTTGGGGCCGCGATTTGCTGCCATTGAT
GTGATTTTATCCCTCACCGCTGTTGAGTCTTTAGCGGGTGCCACTTTTTG
AAAACCCTAGTATTGATGTCAAAATGATGTAACTTTTTTTTATGAAATCT
GGACTTAGTTTCACCTTTGTTGAAATGCCATTAATTTAACTCTTTAAAGT
ATTTATTTTTTGAATTATATCTTATCTGTGAACTTGCCTTTGCCCTGTCA
TTGCTATTTTTACATTAAGATCCTTTGACAATTCAGGAGCTCTGGTTGTT
GCTTGGCTGCCTTTGCACCTGCTTATGGTGCTATTGAATCGAGGCAAGCT
CAAGCCATGAGAAGCTAAAGTTTAAGTGAAGCTTGAGTTTAGTCGAGTTC
CATTTTTAGACCTTGAACTTTTACCGTTAGAATTGATTAATCTCGCTTGA
GTCTGATTCTTATGCTAAATTTCAAATCTGATTACTTATGGTTGAACTTG
AATTTAAGTTAGAATTGAGATTTTTCAGTATTAATAAGGAATAGAAAGAC
CCGATTAGACTCACAAGTTACTCACCTAAAGTATTAGGGTGTTCAAATTC
GGCCCATACCATAACTTAAAGCTAACTTGCTAATGATCGAGACAAATTCG
ATATTTTGTAAATTGAACTTGAGTAGCTTGTGAGCACTGGTGTCTCATTT
ACATCTTACTATGAGTACATCTTAAGATCCTTGGACAACTATCCTTTTGC
TTGAATTCCGTTTCAGGATCAAATTTAGGTCAAATAATAGAGAACCCATT
AATTAGTTTCTGTGTTGGAACTTTGACTTTGCAATCAAGTATTTGAACGG
GCATTGCTGAAACTATTGGGGTAGGGAGAGGGTGGCAAAGTCTAAACAGT
AAACCATGTATTTATCGGATTCGGATAGCATGAAAAATAACCAGGTTGTT
GATTTTGATCATCATGGAAGCTAAATTCTTTCGCTTTCTTAAAATTGTCG
GAGTTGGTTACAAAGCCAGAGCTGAAGCCGAGGGAAGACTCTTATTTCTG
AAACTAGGATACAGTCATGAGGTTGAACTCACCATTCCTCCTGCCGTCCG
CGTTTTCTGCTTCAAAAACAATGTTGTTTGCTGCACTGGACTCGACAAGC
AAAGGGTGCATCAATTTGCCGCTACAGTTCGAAGTTGCAAGCCTCCAGAA
GTTTACAAAGGCAAAGGTATAATGTACACTGATGAAGTTATCAAGAAAAA
ACAAGGTAAAAAATCAAAATGATTTGTTGAAGTGCTTGATTTTTACTTGC
CTTTTTGTTAGTTGTATTGCAGTGTCTCATTTTGTATTAACTTGGTTGAA
TACCCAAACAATGTAGGCATGTTGGAACCTATAACATCTGTTCAACAAAA
TTTTAGGGTCATTGTCTTCAATAAACCACTTATTTTGATGTGTTTGATCG
ATTATTTTCTGAATCAAAATTGGATGATAAGTGATTCTAAAGCTGGTTAT
TTTTCCAGACTTATGGAGTTTGAGGTTATGTTTCCGATTTTTCTGGACAA
TTGTTCGGATATGGGCGTAGAGCATGAGACTCGAGTATATTTGTGTTAGA
CACATGTTCCACCGAATGTTAGTTTCTGTATTTGAAGCTAGTATACCTGA
ATCCGGAACACATACTCGTATATGTAGCTGCAGAATTGAAAGCATAAATA
AAACAACTCCGTGCAAATAATAATACAG

Search form

g.barbadense_cottongen_reftransV1_0098041, g.barbadense_cottongen_reftransV1_0098041 (contig) Gossypium barbadense

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