g.barbadense_cottongen_reftransV1_0098041, g.barbadense_cottongen_reftransV1_0098041 (contig) Gossypium barbadense
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy Swiss-Prot
Match: RL6_CARHZ (50S ribosomal protein L6 OS=Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 / Z-2901) GN=rplF PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.117e-18 Identity = 47/105 (44.76%), Postives = 66/105 (62.86%), Query Frame = 1 Query: 1237 ITRLLI---LIIMEAKFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTIPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI 1542 +TR LI ++ + + + L++VGVGY RA +GR L L +GYSH VE+ P + + N + G+DK+ V FAAT+R+ + PE YKGKGI YTDEVI Sbjct: 67 LTRTLINNMIVGVTNGYQKSLELVGVGY--RAAKQGRKLVLTVGYSHPVEMDPPEGIEIEVPAQNQIIVKGIDKELVGNFAATIRAVREPEPYKGKGIKYTDEVI 169
BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy Swiss-Prot
Match: RL6_NITOC (50S ribosomal protein L6 OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=rplF PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 2.304e-18 Identity = 50/119 (42.02%), Postives = 68/119 (57.14%), Query Frame = 1 Query: 1195 NSKPCIYRIRIA*KITRLLILIIMEA---KFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTIPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI 1542 ++K R+ TR LI +++ F R L++VGVGY RA+ +GR L L LGYSH VE T P + + + G DKQ+V Q AA +R +PPE YKGKG+ Y DEV+ Sbjct: 54 SAKSTDKRVNALRGTTRALINNMVQGVSQGFERRLQLVGVGY--RAQLQGRKLVLSLGYSHPVEFTAPEGLTIEVPSPTEIIVKGYDKQQVGQAAANIRRFRPPEPYKGKGVRYADEVV 170
BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy Swiss-Prot
Match: RL6_JANSC (50S ribosomal protein L6 OS=Jannaschia sp. (strain CCS1) GN=rplF PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 5.516e-18 Identity = 45/89 (50.56%), Postives = 56/89 (62.92%), Query Frame = 1 Query: 1276 FFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTIPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI 1542 F + L+I GVGY RA+ +G +L L LGYSH+V+ T+P V V C KN V G D+Q V Q AA +R + PE YKGKGI Y E I Sbjct: 83 FKKELEITGVGY--RAQMQGNVLKLSLGYSHDVDFTVPEGVTVTCPKNTEVIIEGNDQQLVGQVAANIREWRAPEPYKGKGIRYKGEYI 169
BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy Swiss-Prot
Match: RL6_ERYLH (50S ribosomal protein L6 OS=Erythrobacter litoralis (strain HTCC2594) GN=rplF PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 6.667e-18 Identity = 44/105 (41.90%), Postives = 64/105 (60.95%), Query Frame = 1 Query: 1237 ITRLLILIIMEA---KFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTIPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI 1542 + R L+ ++E F + L+I GVGY RA+A+G+ L L+LGYSH+V++ +P + V V +G+DKQ V Q AA +R + PE YKGKGI Y E + Sbjct: 67 MQRTLVSNLVEGVTEGFSKTLEISGVGY--RAQAQGKTLKLQLGYSHDVDIAVPEGLEVKTPDQTTVIISGIDKQAVGQLAAEIRQWRKPEPYKGKGIKYQGEYV 169
BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy Swiss-Prot
Match: RL6_SPHAL (50S ribosomal protein L6 OS=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) GN=rplF PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 6.990e-18 Identity = 41/89 (46.07%), Postives = 57/89 (64.04%), Query Frame = 1 Query: 1276 FFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTIPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI 1542 F + L+I GVGY RA A+G+ L L+LGYSH+V+ +P + + N + +G+DKQ+V Q AA +R + PE YKGKGI Y E I Sbjct: 83 FTKVLEITGVGY--RANAQGKNLKLQLGYSHDVDFAVPDGIEIKTPDNTTIEISGIDKQQVGQVAAEIRRWRKPEPYKGKGIKYRGEYI 169
BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy Swiss-Prot
Match: RL6_NATTJ (50S ribosomal protein L6 OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=rplF PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 8.124e-18 Identity = 47/105 (44.76%), Postives = 64/105 (60.95%), Query Frame = 1 Query: 1237 ITRLLILIIMEA---KFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTIPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI 1542 ++R LI ++E F R L+IVGVGY RA+ +G+ L L +GYSH V + P V + KNN + G DK+ V Q AA +R+ + PE YKGKGI Y +E I Sbjct: 67 LSRSLIANMVEGVTNGFERHLEIVGVGY--RAQMQGKNLVLNVGYSHPVTIEPPEGVEIEVPKNNQIIVKGTDKEVVGQVAARIRAVRKPEPYKGKGIKYAEEQI 169
BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy Swiss-Prot
Match: RL6_THEAB (50S ribosomal protein L6 OS=Thermosipho africanus (strain TCF52B) GN=rplF PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 9.019e-18 Identity = 42/89 (47.19%), Postives = 58/89 (65.17%), Query Frame = 1 Query: 1276 FFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTIPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI 1542 F + L+IVG+GY RA+ +G+ L + LGY+H VE+ IP V+V N + +G+DKQRV Q AA +R + P VY GKGI Y EV+ Sbjct: 90 FKKELEIVGIGY--RAQLQGKKLVMNLGYAHPVEMEIPSDVKVEVPSPNKIIVSGIDKQRVGQVAADIRKWREPNVYSGKGIRYVGEVV 176
BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy Swiss-Prot
Match: RK6_EMIHU (50S ribosomal protein L6, chloroplastic OS=Emiliania huxleyi GN=rpl6 PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 9.237e-18 Identity = 42/89 (47.19%), Postives = 58/89 (65.17%), Query Frame = 1 Query: 1276 FFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTIPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI 1542 + + L I GVGY RA+ +G+ L L +GYSH V++ PPA+ V + +GL+K+ V +FAA +RS +PPE YKGKGI Y EVI Sbjct: 85 WHKKLTIAGVGY--RAQLDGKDLILNMGYSHPVKMVTPPALSVSVESPTSITVSGLEKEAVGEFAAKIRSVRPPEPYKGKGIAYEGEVI 171
BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy Swiss-Prot
Match: RL6_WOLSU (50S ribosomal protein L6 OS=Wolinella succinogenes (strain ATCC 29543 / DSM 1740 / LMG 7466 / NCTC 11488 / FDC 602W) GN=rplF PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 9.724e-18 Identity = 46/97 (47.42%), Postives = 61/97 (62.89%), Query Frame = 1 Query: 1252 ILIIMEAKFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTIPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI 1542 I+I + A F + L+I GVGYKA +G +L L LG+SH V IP V + KN V+ G DKQ++ Q AA +R +PPE YKGKG+ Y+DE I Sbjct: 75 IVIGLSAGFTKQLEINGVGYKA--AVKGSVLELALGFSHPVNYEIPEGVEIAVEKN-VITIKGSDKQQIGQIAAEIREFRPPEPYKGKGVKYSDETI 168
BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy Swiss-Prot
Match: RL6_NOSS1 (50S ribosomal protein L6 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=rplF PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 9.760e-18 Identity = 45/105 (42.86%), Postives = 64/105 (60.95%), Query Frame = 1 Query: 1237 ITRLLILIIMEA---KFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTIPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI 1542 ++R L+ ++E F R L+I GVGY RA+ +GR L L +GYSH+V++ P ++ N V +G DK+ V AA VR+ +PPE YKGKGI Y EV+ Sbjct: 67 LSRTLVANMVEGVSQGFQRRLEIQGVGY--RAQVQGRNLVLNMGYSHQVQIEPPDGIQFVVENNTNVIVSGYDKEIVGNTAAKVRAVRPPEPYKGKGIRYAGEVV 169
BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy TrEMBL
Match: A0A0B2RTY9_GLYSO (60S ribosomal protein L6, mitochondrial OS=Glycine soja GN=glysoja_017010 PE=3 SV=1) HSP 1 Score: 182.57 bits (462), Expect = 7.225e-51 Identity = 85/93 (91.40%), Postives = 90/93 (96.77%), Query Frame = 1 Query: 1264 MEAKFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTIPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI 1542 MEAKFFRFLKIVGVGYKARAEA GRLL+LKLGYSHEVEL +PPAVRVFCFKNNV+CCTG+DKQRVHQFAATVR+CKPPEVYKGKGIMY DEVI Sbjct: 1 MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVI 93
BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy TrEMBL
Match: A0A072VM71_MEDTR (60S ribosomal protein L6 OS=Medicago truncatula GN=MTR_1g077690 PE=3 SV=1) HSP 1 Score: 181.8 bits (460), Expect = 1.096e-50 Identity = 84/93 (90.32%), Postives = 91/93 (97.85%), Query Frame = 1 Query: 1264 MEAKFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTIPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI 1542 MEAK+FRFLKIVGVGYKARAE+ GRLL+LKLGYSHEVEL+ PPAVRVFCFKNNV+CCTG+DKQRVHQFAATVR+CKPPEVYKGKGIMYTDEVI Sbjct: 1 MEAKYFRFLKIVGVGYKARAESAGRLLYLKLGYSHEVELSAPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRNCKPPEVYKGKGIMYTDEVI 93
BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy TrEMBL
Match: A0A022RMF5_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a016906mg PE=3 SV=1) HSP 1 Score: 181.8 bits (460), Expect = 1.364e-50 Identity = 86/93 (92.47%), Postives = 91/93 (97.85%), Query Frame = 1 Query: 1264 MEAKFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTIPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI 1542 MEAKFFRFLKIVGVG+KARAEAEGRLL+LKLGYSHEVELT+PPAVRVFCFKNNVVCCTG+DK RV+QFAA VRSCKPPEVYKGKGIMYTDEVI Sbjct: 1 MEAKFFRFLKIVGVGFKARAEAEGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKGRVNQFAAAVRSCKPPEVYKGKGIMYTDEVI 93
BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy TrEMBL
Match: A0A0B2SFL0_GLYSO (60S ribosomal protein L6, mitochondrial OS=Glycine soja GN=glysoja_045840 PE=3 SV=1) HSP 1 Score: 181.415 bits (459), Expect = 1.714e-50 Identity = 85/93 (91.40%), Postives = 90/93 (96.77%), Query Frame = 1 Query: 1264 MEAKFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTIPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI 1542 MEAKFFRFLKIVGVGYKARAEA GRLL+LKLGYSHEVELT+PPAVRVFCFKNNV+CCTG+DK RVHQFAATVR+CKPPEVYKGKGIMY DEVI Sbjct: 1 MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVICCTGIDKLRVHQFAATVRTCKPPEVYKGKGIMYVDEVI 93
BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy TrEMBL
Match: A5C2I3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_009029 PE=3 SV=1) HSP 1 Score: 181.03 bits (458), Expect = 2.240e-50 Identity = 86/93 (92.47%), Postives = 90/93 (96.77%), Query Frame = 1 Query: 1264 MEAKFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTIPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI 1542 MEAKFFRFLKIVGVG+KARAE+EGRLLFLKLGYSHEVELT+PPAVRVFCFK NVVCCTG+DKQRVHQFAA VRSCKPPEVYKGKGIMY DEVI Sbjct: 1 MEAKFFRFLKIVGVGFKARAESEGRLLFLKLGYSHEVELTVPPAVRVFCFKPNVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVI 93 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 25
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BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0098041 ID=g.barbadense_cottongen_reftransV1_0098041; Name=g.barbadense_cottongen_reftransV1_0098041; organism=Gossypium barbadense; type=contig; length=2028bpback to top |