g.barbadense_cottongen_reftransV1_0098041, g.barbadense_cottongen_reftransV1_0098041 (contig) Gossypium barbadense
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy Swiss-Prot
Match: RM06_MARPO (60S ribosomal protein L6, mitochondrial OS=Marchantia polymorpha GN=RPL6 PE=3 SV=2) HSP 1 Score: 141.354 bits (355), Expect = 4.933e-38 Identity = 62/93 (66.67%), Postives = 78/93 (83.87%), Query Frame = 1 Query: 1264 MEAKFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTIPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI 1542 MEAKFF FL+I+GVGYKA A+G +L+LKLG+SHE+ L + P+VRVFC K N++CCTG+D Q+V QFAA V+SCKPPEVYKGKGI Y +E+I Sbjct: 1 MEAKFFCFLEIIGVGYKASTNAQGSILYLKLGFSHEIRLQVTPSVRVFCLKPNLICCTGMDHQKVTQFAAIVKSCKPPEVYKGKGIQYRNEII 93
BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy Swiss-Prot
Match: RL6_LACSS (50S ribosomal protein L6 OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=rplF PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 5.156e-20 Identity = 46/96 (47.92%), Postives = 62/96 (64.58%), Query Frame = 1 Query: 1249 LILIIMEAKFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTIPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDE 1536 +IL + E F + L ++GVGY RA+ +G+ L L +GYSH VE+ P V V N + +G+ KQ+V QFAA +R +PPE YKGKGI YTDE Sbjct: 74 MILGVTEG-FKKTLDLIGVGY--RAQLKGKTLVLNVGYSHPVEMEAPEGVNVEVPSNTNIIISGISKQKVGQFAAEIRDVRPPEPYKGKGIRYTDE 166
BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy Swiss-Prot
Match: RL6_MYCPE (50S ribosomal protein L6 OS=Mycoplasma penetrans (strain HF-2) GN=rplF PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 1.504e-19 Identity = 48/96 (50.00%), Postives = 61/96 (63.54%), Query Frame = 1 Query: 1255 LIIMEAKFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTIPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI 1542 LI + + + LKIVGVGYKA G + L LGYSH ++L IP + V C + V TG DK V QFAA +RS +PPE YKGKG+ Y++EVI Sbjct: 77 LIGVNSGHTKKLKIVGVGYKA--AVNGNKINLNLGYSHPIDLEIPAGLNVTCPQATEVVITGADKAVVGQFAAVIRSKRPPEPYKGKGVAYSNEVI 170
BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy Swiss-Prot
Match: RL6_SULNB (50S ribosomal protein L6 OS=Sulfurovum sp. (strain NBC37-1) GN=rplF PE=3 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 1.517e-19 Identity = 45/97 (46.39%), Postives = 65/97 (67.01%), Query Frame = 1 Query: 1252 ILIIMEAKFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTIPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI 1542 I++ ++ + + L+I GVGY RA EG+ L L+LG+SH+V IP + + KN ++ +G DKQ V Q AA +R+ +PPE YKGKG+ YTDEVI Sbjct: 75 IMVGLDKGYSKSLEINGVGY--RAAVEGKTLKLQLGFSHDVNFEIPEGLDIKVDKN-IITVSGTDKQAVGQAAAEIRAYRPPEPYKGKGVKYTDEVI 168
BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy Swiss-Prot
Match: RL6_BEII9 (50S ribosomal protein L6 OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=rplF PE=3 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 1.652e-19 Identity = 49/112 (43.75%), Postives = 67/112 (59.82%), Query Frame = 1 Query: 1216 RIRIA*KITRLLI---LIIMEAKFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTIPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI 1542 + R A +TR ++ +I + F R L+I GVGYKA +G+ L L LGYSH++ IP + + K V TG+DKQRV Q AA +R+ +PPE YKGKG+ Y E I Sbjct: 60 KARAAWGMTRSIVNNLVIGVSQGFERKLEITGVGYKA--AVQGKNLQLSLGYSHDISFPIPDGIAIAAPKPTEVSITGIDKQRVGQIAAEIRALRPPEPYKGKGVKYAGEFI 169
BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy Swiss-Prot
Match: RL6_SYNJA (50S ribosomal protein L6 OS=Synechococcus sp. (strain JA-3-3Ab) GN=rplF PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 8.018e-19 Identity = 42/89 (47.19%), Postives = 58/89 (65.17%), Query Frame = 1 Query: 1276 FFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTIPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI 1542 F R L++VGVGY RA +G L L +GYSH VE+ PP +++ NNV+ +G+DK+ V AA +R+ +PPE YKGKGI Y E + Sbjct: 83 FERRLELVGVGY--RASTQGNKLILNVGYSHPVEIPFPPGIQIAVEGNNVIVVSGIDKELVGNTAARIRAVRPPEPYKGKGIRYVGEQV 169
BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy Swiss-Prot
Match: RL6_FERNB (50S ribosomal protein L6 OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=rplF PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 8.233e-19 Identity = 45/103 (43.69%), Postives = 65/103 (63.11%), Query Frame = 1 Query: 1234 KITRLLILIIMEAKFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTIPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI 1542 ++ R ++L + E F + L+IVGVGY RA+ +G L + LGY+H+VE +P V+V N + +G+DKQRV Q AA +R + P Y GKGI Y DEV+ Sbjct: 77 RLIRNMVLGVTEG-FKKELEIVGVGY--RAQLQGNKLIMNLGYAHQVEFDVPADVKVEVPAPNKIIVSGIDKQRVGQVAADIRKWREPNPYSGKGIKYVDEVL 176
BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy Swiss-Prot
Match: RL6_MESFL (50S ribosomal protein L6 OS=Mesoplasma florum (strain ATCC 33453 / NBRC 100688 / NCTC 11704 / L1) GN=rplF PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 8.738e-19 Identity = 49/97 (50.52%), Postives = 60/97 (61.86%), Query Frame = 1 Query: 1252 ILIIMEAKFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTIPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI 1542 +LI + F + L I GVGY RA G L L LGYSH VE TIP + V C K + +G+DKQ V Q AA +RS + PE YKGKGI Y+DE+I Sbjct: 76 MLIGVSEGFKKTLDINGVGY--RAALAGSKLNLSLGYSHPVEYTIPQGITVECPKPTQIIISGIDKQVVGQVAAEIRSYRRPEPYKGKGIKYSDEII 170
BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy Swiss-Prot
Match: RK6_ARATH (50S ribosomal protein L6, chloroplastic OS=Arabidopsis thaliana GN=RPL6 PE=2 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.098e-18 Identity = 42/89 (47.19%), Postives = 61/89 (68.54%), Query Frame = 1 Query: 1276 FFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTIPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI 1542 F + L +VGVGY RA +G+ L L LG+SH V++ IP +++V +N + +G DK + QFAATVR +PPE YKGKG+ Y+DE++ Sbjct: 126 FEKKLILVGVGY--RATVDGKELVLNLGFSHPVKMQIPDSLKVKVEENTRITVSGYDKSEIGQFAATVRKWRPPEPYKGKGVKYSDEIV 212
BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy Swiss-Prot
Match: RL6_CYAP8 (50S ribosomal protein L6 OS=Cyanothece sp. (strain PCC 8801) GN=rplF PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.098e-18 Identity = 45/103 (43.69%), Postives = 66/103 (64.08%), Query Frame = 1 Query: 1237 ITRLLILIIMEA---KFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTIPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDE 1536 +TR L+ ++E F + L I GVGY RA+ +G L L +GYS VE+T+P ++V N +V +G+DK+ V +A +R+ +PPEVYKGKGI Y+DE Sbjct: 67 LTRTLVANMVEGVSKGFEKRLSIQGVGY--RAQVQGTKLTLNVGYSKPVEMTMPAGIQVAVENNTLVIVSGIDKEIVGNVSAEIRAVRPPEVYKGKGIRYSDE 167
BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy TrEMBL
Match: A0A0D2S0T6_GOSRA (Uncharacterized protein (Fragment) OS=Gossypium raimondii GN=B456_006G223700 PE=3 SV=1) HSP 1 Score: 198.364 bits (503), Expect = 5.568e-56 Identity = 96/99 (96.97%), Postives = 97/99 (97.98%), Query Frame = 1 Query: 1246 LLILIIMEAKFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTIPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI 1542 LLILIIMEAKFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVEL +PPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMY DEVI Sbjct: 42 LLILIIMEAKFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELPVPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYIDEVI 140
BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy TrEMBL
Match: A0A061ES89_THECC (Ribosomal protein L6 family protein OS=Theobroma cacao GN=TCM_020231 PE=3 SV=1) HSP 1 Score: 190.66 bits (483), Expect = 8.045e-54 Identity = 91/93 (97.85%), Postives = 92/93 (98.92%), Query Frame = 1 Query: 1264 MEAKFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTIPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI 1542 MEAKFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELT+PPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMY DEVI Sbjct: 1 MEAKFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYIDEVI 93
BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy TrEMBL
Match: A0A0B0N8R6_GOSAR (50S ribosomal L6 OS=Gossypium arboreum GN=F383_04452 PE=3 SV=1) HSP 1 Score: 187.963 bits (476), Expect = 7.078e-53 Identity = 90/93 (96.77%), Postives = 91/93 (97.85%), Query Frame = 1 Query: 1264 MEAKFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTIPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI 1542 MEAKFFRFLKI GVGYKARAEAEGRLLFLKLGYSHEVEL +PPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI Sbjct: 1 MEAKFFRFLKIFGVGYKARAEAEGRLLFLKLGYSHEVELPVPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI 93
BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy TrEMBL
Match: A0A067LIJ8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16278 PE=3 SV=1) HSP 1 Score: 185.652 bits (470), Expect = 4.448e-52 Identity = 87/93 (93.55%), Postives = 92/93 (98.92%), Query Frame = 1 Query: 1264 MEAKFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTIPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI 1542 MEAKFFRFLKIVGVGYKARAE+EGRLL+LKLGYSHEVELT+PPAVRVFCFKNNVVCCTG+DKQRVHQFAA+VRSCKPPEVYKGKGIMY DEVI Sbjct: 1 MEAKFFRFLKIVGVGYKARAESEGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAASVRSCKPPEVYKGKGIMYIDEVI 93
BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy TrEMBL
Match: B9SNA1_RICCO (50S ribosomal protein L6, putative OS=Ricinus communis GN=RCOM_0174250 PE=3 SV=1) HSP 1 Score: 185.652 bits (470), Expect = 4.448e-52 Identity = 87/93 (93.55%), Postives = 92/93 (98.92%), Query Frame = 1 Query: 1264 MEAKFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTIPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI 1542 MEAKFFRFLKIVGVGYKARAE+EGRLL+LKLGYSHEVELT+PPAVRVFCFKNNVVCCTG+DKQRVHQFAA+VRSCKPPEVYKGKGIMY DEVI Sbjct: 1 MEAKFFRFLKIVGVGYKARAESEGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAASVRSCKPPEVYKGKGIMYIDEVI 93
BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy TrEMBL
Match: A0A067LD45_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00217 PE=3 SV=1) HSP 1 Score: 185.652 bits (470), Expect = 5.651e-52 Identity = 87/93 (93.55%), Postives = 92/93 (98.92%), Query Frame = 1 Query: 1264 MEAKFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTIPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI 1542 M+AKFFRFLKIVGVGYKARAEAEGRLL+LKLGYSHEVELT+PPAVRVFCFKNNVVCCTG+DKQRVHQFAA+VRSCKPPEVYKGKGIMY DEVI Sbjct: 1 MDAKFFRFLKIVGVGYKARAEAEGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAASVRSCKPPEVYKGKGIMYIDEVI 93
BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy TrEMBL
Match: K7KX08_SOYBN (Uncharacterized protein OS=Glycine max PE=3 SV=1) HSP 1 Score: 186.422 bits (472), Expect = 6.148e-52 Identity = 87/96 (90.62%), Postives = 93/96 (96.88%), Query Frame = 1 Query: 1255 LIIMEAKFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTIPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI 1542 L +MEAKFFRFLKIVGVGYKARAEA GRLL+LKLGYSHEVELT+PPAVRVFCFKNNV+CCTG+DKQRVHQFAATVR+CKPPEVYKGKGIMY DEVI Sbjct: 21 LALMEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVI 116
BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy TrEMBL
Match: A0A0A0KJ40_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G502670 PE=3 SV=1) HSP 1 Score: 184.882 bits (468), Expect = 1.080e-51 Identity = 87/93 (93.55%), Postives = 90/93 (96.77%), Query Frame = 1 Query: 1264 MEAKFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTIPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI 1542 MEAKFFRFLKIVGVGYKARAEA GRLL+LKLGYSHEVELT+PPAVRVFCFKNNVVCCTG+DKQRVHQFAA VRSCKPPEVYKGKGIMY DEVI Sbjct: 1 MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYVDEVI 93
BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy TrEMBL
Match: A9PDZ0_POPTR (Ribosomal protein L6 OS=Populus trichocarpa GN=POPTR_0007s12890g PE=2 SV=1) HSP 1 Score: 184.496 bits (467), Expect = 1.332e-51 Identity = 88/93 (94.62%), Postives = 91/93 (97.85%), Query Frame = 1 Query: 1264 MEAKFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTIPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI 1542 MEAKFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELT+PPAVRVFCFKNNVVCCTG+DK RVHQFAA+VRSCKPPEVYKGKGIMY DEVI Sbjct: 1 MEAKFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKGRVHQFAASVRSCKPPEVYKGKGIMYIDEVI 93
BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy TrEMBL
Match: I1KDT7_SOYBN (Uncharacterized protein OS=Glycine max PE=3 SV=1) HSP 1 Score: 184.496 bits (467), Expect = 1.471e-51 Identity = 86/93 (92.47%), Postives = 91/93 (97.85%), Query Frame = 1 Query: 1264 MEAKFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTIPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI 1542 MEAKFFRFLKIVGVGYKARAEA GRLL+LKLGYSHEVELT+PPAVRVFCFKNNV+CCTG+DKQRVHQFAATVR+CKPPEVYKGKGIMY DEVI Sbjct: 1 MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVI 93 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 25
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BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0098041 ID=g.barbadense_cottongen_reftransV1_0098041; Name=g.barbadense_cottongen_reftransV1_0098041; organism=Gossypium barbadense; type=contig; length=2028bpback to top |