g.barbadense_cottongen_reftransV1_0098040, g.barbadense_cottongen_reftransV1_0098040 (contig) Gossypium barbadense

Overview


Name	g.barbadense_cottongen_reftransV1_0098040
Unique Name	g.barbadense_cottongen_reftransV1_0098040
Type	contig
Organism	Gossypium barbadense (Sea Island cotton)
Sequence length	2758

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Dt06	chromosome	g.barbadense_cottongen_reftransV1_0098040:1..2758 . Dt06:30849309..30856275 -		n/a

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium barbadense CottonGen RefTrans V1	2016-11-01
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot	2016-11-01
InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1	2016-11-02
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL	2016-11-02

Homology

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BLAST of g.barbadense_cottongen_reftransV1_0098040 vs. ExPASy Swiss-Prot
Match: DBP3_LODEL (ATP-dependent RNA helicase DBP3 OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=DBP3 PE=3 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 2.297e-24
Identity = 79/266 (29.70%), Postives = 127/266 (47.74%), Query Frame = 3

Query:  939 SFLFVTRLMLVAF*VFSVAKSISHHARFRSTMVSGGGRLRSQEDSLNNPIDMVVGTPGRVLQHIDDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLGPLKNRALKPSGQGFQTILVTATMTKAVQKLIDEEFQ-----GIEHLRTSTLHKKIASARHDFIKLLGSENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLGENQISTVNYHGEVPPEQRVENLNKFKSDDGDCPTLVCTDLAARGLDL-DVNHVVMFDFPL 1718
            S L ++    +A  ++   + ++         + GG     Q   + N  ++VV TPGR++  I+DG +    I YLVLDEAD M ++GF  DI+  +G           QG QT++ TAT  K V++L +          I      + +K+I             E KL  LLQ  + +    N+++VF      +  ++  L  N+      HG++  +QR + L  FKS  G+C  L+ TD+AARGLD+ +V +V+   FPL
Sbjct:  197 SVLCISPTRELALQIYDNLEDLTRGTDVSCVAIYGGVSKDDQIKKIRNGANVVVATPGRLVDLINDGAVDLSSINYLVLDEADRMLEKGFEEDIKLIIGST-------PAQGRQTLMFTATWPKEVRELANNFMNQPVKVTIGDRDELSANKRITQIVEVLDDKFQKEKKLINLLQKYQNTGNGDNKILVFALYKKEASRIESLLHRNKFKVAAIHGDLSQQQRTQALQSFKS--GECNLLLATDVAARGLDIPNVKYVINLTFPL 453

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BLAST of g.barbadense_cottongen_reftransV1_0098040 vs. ExPASy Swiss-Prot
Match: DDX4_HUMAN (Probable ATP-dependent RNA helicase DDX4 OS=Homo sapiens GN=DDX4 PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 2.360e-24
Identity = 79/252 (31.35%), Postives = 129/252 (51.19%), Query Frame = 3

Query:  981 VFSVAKSISHHARFRSTMVSGGGRLRSQEDSLNNPIDMVVGTPGRVLQHIDDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLGPLKNRALKPSGQGFQTILVTATMTKAVQKLIDEEFQGIEHLRTSTLH---KKIASARHDF---IKLLGSENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLGENQISTVNYHGEVPPEQRVENLNKFKSDDGDCPTLVCTDLAARGLDLD-VNHVVMFDFP 1715
            ++  A+  S     R+ ++ GG +L      +    +++  TPGR++  I    +    IKYLVLDEAD M D GFGP+++K +    +    PS +  QT++ +AT  + +Q+L        E L+++ L     ++  A  D    +  +G  +K E L+++L        R MVF  T   +  +  FL + +IST + HG+    +R + L  F+   G CP LV T +AARGLD++ V HV+ FD P
Sbjct:  381 IYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLI----SCPGMPSKEQRQTLMFSATFPEEIQRL------AAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSKREKLVEILRN--IGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRF--GKCPVLVATSVAARGLDIENVQHVINFDLP 618

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BLAST of g.barbadense_cottongen_reftransV1_0098040 vs. ExPASy Swiss-Prot
Match: DED1_PHANO (ATP-dependent RNA helicase DED1 OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) GN=DED1 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.599e-24
Identity = 82/266 (30.83%), Postives = 132/266 (49.62%), Query Frame = 3

Query:  936 TSFLFVTRLMLVAF*VFSVAKSISHHARFRSTMVSGGGRLRSQEDSLNNPIDMVVGTPGRVLQHIDDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLGPLKNRALKPSGQGFQTILVTATMTKAVQKLIDE---EFQGIEHLRTSTLHKKIASARHDFIKLLGSENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLGENQISTVNYHGEVPPEQRVENLNKFKSDDGDCPTLVCTDLAARGLDL-DVNHVVMFDFPLN 1721
            TS +      LV+  +F  A+  ++ +  R  +V GG  + SQ   +    D++V TPGR++  I+ G +    IKYLVLDEAD M D GF P IR+    ++   + P+  G QT++ +AT  + +Q L  +   E+  +   R  +  + I       I+ +   +K   LL +L    A     ++F  T   + ++  FL        + HG+    +R + L  F+S  G CP LV T +AARGLD+ +V HVV +D P +
Sbjct:  288 TSLILAPTRELVSQ-IFDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLASIKYLVLDEADRMLDMGFEPQIRRI---VEGEDMPPTA-GRQTLMFSATFPRDIQMLARDFLKEYIFLSVGRVGSTSENITQK----IEYVEDADKRSVLLDILHTHGA--GLSLIFVETKRMADSLSDFLINQGFPATSIHGDRTQREREKALEMFRS--GRCPILVATAVAARGLDIPNVTHVVNYDLPTD 540

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0098040 vs. ExPASy Swiss-Prot
Match: RH52C_ORYSJ (DEAD-box ATP-dependent RNA helicase 52C OS=Oryza sativa subsp. japonica GN=Os11g0599500 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.982e-24
Identity = 76/246 (30.89%), Postives = 119/246 (48.37%), Query Frame = 3

Query:  993 AKSISHHARFRSTMVSGGGRLRSQEDSLNNPIDMVVGTPGRVLQHIDDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLGPLKNRALKPSGQGFQTILVTATMTKAVQKLIDEEFQGIEHLRTSTLHKK--IASARHDFIKLLGSENKLEALLQVLEPSLAKGNR--VMVFCNTLNSSRAVDHFLGENQISTVNYHGEVPPEQRVENLNKFKSDDGDCPTLVCTDLAARGLDLD-VNHVVMFDFP 1715
            A+  S+    R  +  GG  +  Q   L   +D++V TPGR++  ++   +    I+YL LDEAD M D GF P +R+ +  +    + P G   QT+L +AT  K +Q++  +  +    L    +     +   R +F++     + L  LL     S   G     +VF  T   + +++H+L  N     + HG+   ++R   L  FKS  G  P LV TD+AARGLD+  V HVV FD P
Sbjct:  255 ARKFSYQTGVRVVVAYGGAPINQQLRDLERGVDILVATPGRLVDLLERARVSLQSIRYLALDEADRMLDMGFEPQVRRIVEQMD---MPPPG-ARQTMLFSATFPKEIQRMASDFLENYIFLAVGRVGSSTDLIVQRVEFVQEADKRSHLMDLLHAQRDSATPGKPTLTLVFVETKRGADSLEHWLCMNGFPATSIHGDRNQQEREYALRSFKS--GHTPILVATDVAARGLDIPHVAHVVNFDLP 494

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BLAST of g.barbadense_cottongen_reftransV1_0098040 vs. ExPASy Swiss-Prot
Match: DBP2_PICST (ATP-dependent RNA helicase DBP2 OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) GN=DBP2 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.042e-24
Identity = 74/238 (31.09%), Postives = 122/238 (51.26%), Query Frame = 3

Query: 1014 ARFRSTMVSGGGRLRSQEDSLNNPIDMVVGTPGRVLQHIDDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLGPLKNRALKPSGQGFQTILVTATMTKAVQKLIDEEFQGIEHLRTSTLHKKIASARHDFIKLLGSENKLEALLQVLEPSLA-KGNRVMVFCNTLNSSRAVDHFLGENQISTVNYHGEVPPEQRVENLNKFKSDDGDCPTLVCTDLAARGLDLD-VNHVVMFDFPLN 1721
            +R R+T V GG     Q   L   +++V+ TPGR++  ++ G      + YLVLDEAD M D GF P IRK +       ++P     QT++ +AT  K VQ L  +  Q    +R  +L    +      ++++    K + L++ LE +   K ++V++F +T  +   V  +L  +    +  HG+    +R   L +FK+  G  P +V TD+AARG+D+  +N V+ FD P N
Sbjct:  197 SRIRNTCVYGGAPKGQQIRDLARGVEIVIATPGRLIDMLEMGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVD-----QIRPDR---QTLMWSATWPKEVQNLARDYLQDPIQVRIGSLELAASHTITQVVEVISEYEKRDRLVKHLETATTEKESKVLIFASTKKTCDEVTSYLRADGWPALAIHGDKQQSERDWVLREFKT--GKSPIMVATDVAARGIDVKGINFVINFDMPGN 424

HSP 2 Score: 61.6178 bits (148), Expect = 2.383e-8
Identity = 36/93 (38.71%), Postives = 51/93 (54.84%), Query Frame = 2

Query:  491 SFEELGLSEEVMGAVREMGIEVPTEIQCIGIPFVLEEKSVVLGSHTGSGKTLAYMLPLVQLLRRDEAILGMLTKPRRPRAVVLCPTRELSEQV 769
            +F+E G  E V+  V+  G   PT IQC G P  L  + +V  + TGSGKTL+Y LP +  +        +L+    P  +VL PTREL+ Q+
Sbjct:   98 TFDEAGFPEYVLNEVKAQGFPSPTAIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPAIVHINAQP----LLSPGDGPVVLVLAPTRELAVQI 186

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BLAST of g.barbadense_cottongen_reftransV1_0098040 vs. ExPASy TrEMBL
Match: A0A0B0PKP3_GOSAR (DEAD-box ATP-dependent RNA helicase 39-like protein OS=Gossypium arboreum GN=F383_09943 PE=4 SV=1)

HSP 1 Score: 513.457 bits (1321), Expect = 4.528e-167
Identity = 243/249 (97.59%), Postives = 245/249 (98.39%), Query Frame = 3

Query:  981 VFSVAKSISHHARFRSTMVSGGGRLRSQEDSLNNPIDMVVGTPGRVLQHIDDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLGPLKNRALKPSGQGFQTILVTATMTKAVQKLIDEEFQGIEHLRTSTLHKKIASARHDFIKLLGSENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLGENQISTVNYHGEVPPEQRVENLNKFKSDDGDCPTLVCTDLAARGLDLDVNHVVMFDFPLNSV 1727
            VF VAKSISHHARFRSTMVSGGGRLR QEDSLNNPIDMVVGTPGRVLQHIDDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLGPLKNRALKPSGQGFQTILVTATMTKAVQKLIDEEFQGIEHLRTSTLHKKIASARHDFIKL GSENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLGENQISTVNYHGEVP EQRVENLNKFKSDDGDCPTLVCTDLAARGLDLDVNHV+MFDFPLNS+
Sbjct:  209 VFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRVLQHIDDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLGPLKNRALKPSGQGFQTILVTATMTKAVQKLIDEEFQGIEHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLGENQISTVNYHGEVPAEQRVENLNKFKSDDGDCPTLVCTDLAARGLDLDVNHVIMFDFPLNSI 457

HSP 2 Score: 362.459 bits (929), Expect = 2.105e-109
Identity = 202/222 (90.99%), Postives = 208/222 (93.69%), Query Frame = 2

Query:  143 MMQKAMMAATSRTLLFVSLLSSPKHFSYYPFLKPSRVFRGFKPFCSAPSPILTTIDPDDLKHSMLLERLRTRHLKHSAKLPSSSPSMPPQNLPVLGQETEAYDXXXXXXXXXIMADSFEELGLSEEVMGAVREMGIEVPTEIQCIGIPFVLEEKSVVLGSHTGSGKTLAYMLPLVQLLRRDEAILGMLTKPRRPRAVVLCPTRELSEQVLVTHPAMIWTSEF 808
            MMQKAMMAATSRTLL VSLLSSPKHFSYYPFLKPSRVFRGFK FC+APSPI TT+DPDDLKHSMLLERLRTRHL+HS KLPSSSPS PPQNLPVLGQETEAYDKGKGKKKKKIMADSFEELGLSEEVMGAVREMGIEVPTEIQCIGIPFVLEEKSVVLGSHTGSGKTLAYMLPLVQLLRRDEAILGMLTKPRRPRAVVLCPTRELSEQV     ++   + F
Sbjct:    1 MMQKAMMAATSRTLLSVSLLSSPKHFSYYPFLKPSRVFRGFKAFCNAPSPIPTTVDPDDLKHSMLLERLRTRHLRHSTKLPSSSPSKPPQNLPVLGQETEAYDKGKGKKKKKIMADSFEELGLSEEVMGAVREMGIEVPTEIQCIGIPFVLEEKSVVLGSHTGSGKTLAYMLPLVQLLRRDEAILGMLTKPRRPRAVVLCPTRELSEQVFRVAKSISHHARF 222

HSP 3 Score: 273.092 bits (697), Expect = 2.262e-76
Identity = 157/164 (95.73%), Postives = 160/164 (97.56%), Query Frame = 2

Query: 1853 IDYLHRTGRTARMGAKGKVTSLVAKKDLLLAERIEEAIRKNESLESLTVDNVRRDTARTRITEQKGKNVKLFKTSNLKNKTKAVSASVRTSGKEPTIAKSVKSTXXXXXXXXXXXXXXSLETAKTSAVRKKNRSVGGSSEGKKLKVVGFRGQASSSKRESFTPS 2344
            IDYLHRTGRTARMGAKGKVTSLVAKKDLLLAERIEEAIRKNESLESLTVDNVRRDTARTRITEQKGKNVKLFK SN KNKTKAVSASV TSGK+PTIAKSVKSTAPAKPSKKIVKVSKSL+TAKTSAV KKNRS+GGSSEGKKLKVVGFRGQASSSKRESFTPS
Sbjct:  457 IDYLHRTGRTARMGAKGKVTSLVAKKDLLLAERIEEAIRKNESLESLTVDNVRRDTARTRITEQKGKNVKLFKASNQKNKTKAVSASVLTSGKKPTIAKSVKSTAPAKPSKKIVKVSKSLKTAKTSAVGKKNRSIGGSSEGKKLKVVGFRGQASSSKRESFTPS 620

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BLAST of g.barbadense_cottongen_reftransV1_0098040 vs. ExPASy TrEMBL
Match: A0A0D2UBN8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G134100 PE=4 SV=1)

HSP 1 Score: 509.22 bits (1310), Expect = 1.763e-165
Identity = 241/249 (96.79%), Postives = 244/249 (97.99%), Query Frame = 3

Query:  981 VFSVAKSISHHARFRSTMVSGGGRLRSQEDSLNNPIDMVVGTPGRVLQHIDDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLGPLKNRALKPSGQGFQTILVTATMTKAVQKLIDEEFQGIEHLRTSTLHKKIASARHDFIKLLGSENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLGENQISTVNYHGEVPPEQRVENLNKFKSDDGDCPTLVCTDLAARGLDLDVNHVVMFDFPLNSV 1727
            VF VAKSISHHARFRSTMVSGGGRLR QEDSLNNPIDMVVGTPGRVLQHIDDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLGPLKNRALKP+GQGFQTILVTATMTKAVQKLIDEEFQGIEHLRTSTLHKKIASA HDFIKL GSENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLGENQISTVNYHGEVP EQRVENLNKFKSDDGDCPTLVCTDLAARGLDLDVNHV+MFDFPLNS+
Sbjct:  209 VFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRVLQHIDDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLGPLKNRALKPNGQGFQTILVTATMTKAVQKLIDEEFQGIEHLRTSTLHKKIASAHHDFIKLSGSENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLGENQISTVNYHGEVPAEQRVENLNKFKSDDGDCPTLVCTDLAARGLDLDVNHVIMFDFPLNSI 457

HSP 2 Score: 386.726 bits (992), Expect = 1.560e-118
Identity = 208/222 (93.69%), Postives = 212/222 (95.50%), Query Frame = 2

Query:  143 MMQKAMMAATSRTLLFVSLLSSPKHFSYYPFLKPSRVFRGFKPFCSAPSPILTTIDPDDLKHSMLLERLRTRHLKHSAKLPSSSPSMPPQNLPVLGQETEAYDXXXXXXXXXIMADSFEELGLSEEVMGAVREMGIEVPTEIQCIGIPFVLEEKSVVLGSHTGSGKTLAYMLPLVQLLRRDEAILGMLTKPRRPRAVVLCPTRELSEQVLVTHPAMIWTSEF 808
            MMQKAMMAATSRTLLFVSLLSSPKHFSYYPFLKPSRVFRGFKPFCSAPSPILTTIDPDDLKHSMLLERLRTRHLKHSAKLPSSSPSMPPQNLPVLGQETEAYDKGKGKKKKKIMADSFEELGLSEEVMGAVREMGIEVPTEIQCIGIP VLEEKSVVLGSHTGSGKTLAYMLPLVQLLRRDEA+LGMLTKPRRPRAVVLCPTRELSEQV     ++   + F
Sbjct:    1 MMQKAMMAATSRTLLFVSLLSSPKHFSYYPFLKPSRVFRGFKPFCSAPSPILTTIDPDDLKHSMLLERLRTRHLKHSAKLPSSSPSMPPQNLPVLGQETEAYDKGKGKKKKKIMADSFEELGLSEEVMGAVREMGIEVPTEIQCIGIPSVLEEKSVVLGSHTGSGKTLAYMLPLVQLLRRDEAMLGMLTKPRRPRAVVLCPTRELSEQVFRVAKSISHHARF 222

HSP 3 Score: 276.944 bits (707), Expect = 8.332e-78
Identity = 160/164 (97.56%), Postives = 162/164 (98.78%), Query Frame = 2

Query: 1853 IDYLHRTGRTARMGAKGKVTSLVAKKDLLLAERIEEAIRKNESLESLTVDNVRRDTARTRITEQKGKNVKLFKTSNLKNKTKAVSASVRTSGKEPTIAKSVKSTXXXXXXXXXXXXXXSLETAKTSAVRKKNRSVGGSSEGKKLKVVGFRGQASSSKRESFTPS 2344
            IDYLHRTGRTARMGAKGKVTSLVAKKDLLLAERIE AIRKNESLESLTVDNVRRDTARTRITEQKGKNVKLFKTSN KNKTKAVSASVRTSGKEPTIAKSVKSTAPAKPSKKIVKVSKSL+TAKTSAV+KKNRSVGGSSEGKKLKVVGFRGQASSSKRESFTPS
Sbjct:  457 IDYLHRTGRTARMGAKGKVTSLVAKKDLLLAERIEAAIRKNESLESLTVDNVRRDTARTRITEQKGKNVKLFKTSNQKNKTKAVSASVRTSGKEPTIAKSVKSTAPAKPSKKIVKVSKSLKTAKTSAVQKKNRSVGGSSEGKKLKVVGFRGQASSSKRESFTPS 620

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0098040 vs. ExPASy TrEMBL
Match: A0A0D2V9X0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G134100 PE=4 SV=1)

HSP 1 Score: 508.834 bits (1309), Expect = 1.823e-165
Identity = 241/249 (96.79%), Postives = 244/249 (97.99%), Query Frame = 3

Query:  981 VFSVAKSISHHARFRSTMVSGGGRLRSQEDSLNNPIDMVVGTPGRVLQHIDDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLGPLKNRALKPSGQGFQTILVTATMTKAVQKLIDEEFQGIEHLRTSTLHKKIASARHDFIKLLGSENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLGENQISTVNYHGEVPPEQRVENLNKFKSDDGDCPTLVCTDLAARGLDLDVNHVVMFDFPLNSV 1727
            VF VAKSISHHARFRSTMVSGGGRLR QEDSLNNPIDMVVGTPGRVLQHIDDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLGPLKNRALKP+GQGFQTILVTATMTKAVQKLIDEEFQGIEHLRTSTLHKKIASA HDFIKL GSENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLGENQISTVNYHGEVP EQRVENLNKFKSDDGDCPTLVCTDLAARGLDLDVNHV+MFDFPLNS+
Sbjct:  209 VFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRVLQHIDDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLGPLKNRALKPNGQGFQTILVTATMTKAVQKLIDEEFQGIEHLRTSTLHKKIASAHHDFIKLSGSENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLGENQISTVNYHGEVPAEQRVENLNKFKSDDGDCPTLVCTDLAARGLDLDVNHVIMFDFPLNSI 457

HSP 2 Score: 385.956 bits (990), Expect = 2.122e-118
Identity = 208/222 (93.69%), Postives = 212/222 (95.50%), Query Frame = 2

Query:  143 MMQKAMMAATSRTLLFVSLLSSPKHFSYYPFLKPSRVFRGFKPFCSAPSPILTTIDPDDLKHSMLLERLRTRHLKHSAKLPSSSPSMPPQNLPVLGQETEAYDXXXXXXXXXIMADSFEELGLSEEVMGAVREMGIEVPTEIQCIGIPFVLEEKSVVLGSHTGSGKTLAYMLPLVQLLRRDEAILGMLTKPRRPRAVVLCPTRELSEQVLVTHPAMIWTSEF 808
            MMQKAMMAATSRTLLFVSLLSSPKHFSYYPFLKPSRVFRGFKPFCSAPSPILTTIDPDDLKHSMLLERLRTRHLKHSAKLPSSSPSMPPQNLPVLGQETEAYDKGKGKKKKKIMADSFEELGLSEEVMGAVREMGIEVPTEIQCIGIP VLEEKSVVLGSHTGSGKTLAYMLPLVQLLRRDEA+LGMLTKPRRPRAVVLCPTRELSEQV     ++   + F
Sbjct:    1 MMQKAMMAATSRTLLFVSLLSSPKHFSYYPFLKPSRVFRGFKPFCSAPSPILTTIDPDDLKHSMLLERLRTRHLKHSAKLPSSSPSMPPQNLPVLGQETEAYDKGKGKKKKKIMADSFEELGLSEEVMGAVREMGIEVPTEIQCIGIPSVLEEKSVVLGSHTGSGKTLAYMLPLVQLLRRDEAMLGMLTKPRRPRAVVLCPTRELSEQVFRVAKSISHHARF 222

HSP 3 Score: 239.965 bits (611), Expect = 7.238e-65
Identity = 145/164 (88.41%), Postives = 147/164 (89.63%), Query Frame = 2

Query: 1853 IDYLHRTGRTARMGAKGKVTSLVAKKDLLLAERIEEAIRKNESLESLTVDNVRRDTARTRITEQKGKNVKLFKTSNLKNKTKAVSASVRTSGKEPTIAKSVKSTXXXXXXXXXXXXXXSLETAKTSAVRKKNRSVGGSSEGKKLKVVGFRGQASSSKRESFTPS 2344
            IDYLHRTGRTARMGAK               ERIE AIRKNESLESLTVDNVRRDTARTRITEQKGKNVKLFKTSN KNKTKAVSASVRTSGKEPTIAKSVKSTAPAKPSKKIVKVSKSL+TAKTSAV+KKNRSVGGSSEGKKLKVVGFRGQASSSKRESFTPS
Sbjct:  457 IDYLHRTGRTARMGAK---------------ERIEAAIRKNESLESLTVDNVRRDTARTRITEQKGKNVKLFKTSNQKNKTKAVSASVRTSGKEPTIAKSVKSTAPAKPSKKIVKVSKSLKTAKTSAVQKKNRSVGGSSEGKKLKVVGFRGQASSSKRESFTPS 605

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0098040 vs. ExPASy TrEMBL
Match: A0A061FHR1_THECC (DEAD-box ATP-dependent RNA helicase 39 isoform 1 OS=Theobroma cacao GN=TCM_035812 PE=4 SV=1)

HSP 1 Score: 499.204 bits (1284), Expect = 1.399e-161
Identity = 236/249 (94.78%), Postives = 242/249 (97.19%), Query Frame = 3

Query:  981 VFSVAKSISHHARFRSTMVSGGGRLRSQEDSLNNPIDMVVGTPGRVLQHIDDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLGPLKNRALKPSGQGFQTILVTATMTKAVQKLIDEEFQGIEHLRTSTLHKKIASARHDFIKLLGSENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLGENQISTVNYHGEVPPEQRVENLNKFKSDDGDCPTLVCTDLAARGLDLDVNHVVMFDFPLNSV 1727
            VF VAKSISHHARFRSTMVSGGGRLR QEDSLN PIDMVVGTPGRVLQHI+DGNMVYGDIKYLVLDEADTMFD GFGPDIRKFLGPLKN ALKP+GQGFQTILVTATMTKAV+KLIDEEFQGIEHLRTSTLHKKIASARHDFIKL GSENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLGENQISTVNYHGEVP EQRVENLNKFKSDDGDCPTLVCTDLAARGLDLDV+HV+MFDFPLNS+
Sbjct:  208 VFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNKPIDMVVGTPGRVLQHIEDGNMVYGDIKYLVLDEADTMFDHGFGPDIRKFLGPLKNHALKPNGQGFQTILVTATMTKAVEKLIDEEFQGIEHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLGENQISTVNYHGEVPAEQRVENLNKFKSDDGDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSI 456

HSP 2 Score: 283.878 bits (725), Expect = 3.179e-80
Identity = 158/225 (70.22%), Postives = 178/225 (79.11%), Query Frame = 2

Query:  143 MMQKAMMAATSRTLLFVSLLSSPKHFSYYPFLK---PSRVFRGFKPFCSAPSPILTTIDPDDLKHSMLLERLRTRHLKHSAKLPSSSPSMPPQNLPVLGQETEAYDXXXXXXXXXIMADSFEELGLSEEVMGAVREMGIEVPTEIQCIGIPFVLEEKSVVLGSHTGSGKTLAYMLPLVQLLRRDEAILGMLTKPRRPRAVVLCPTRELSEQVLVTHPAMIWTSEF 808
            MMQKAMM  TSRTLL +SLLSS KHF +YPFLK   PSRV  GFKP C+A +P  T I+PD L+HSMLLERLRTRHLK S + PS  PS P + +    +E +A DKGK +KK   M +SFEELGLSEEVMGAVREMGIEVPTEIQCIG+P VL+ +SVVLGSHTGSGKTLAYMLPLVQLLR DEA+LGMLTKPRRPRAVVLCPTRELSEQV     ++   + F
Sbjct:    1 MMQKAMMGGTSRTLLSISLLSSTKHFCHYPFLKLPKPSRVLPGFKPLCTATAPTPTIIEPDQLRHSMLLERLRTRHLKDSTRTPS--PSKPQEKVTAFDKEGDASDKGKKRKKG--MVESFEELGLSEEVMGAVREMGIEVPTEIQCIGVPSVLQGRSVVLGSHTGSGKTLAYMLPLVQLLRLDEALLGMLTKPRRPRAVVLCPTRELSEQVFRVAKSISHHARF 221

HSP 3 Score: 209.149 bits (531), Expect = 2.928e-54
Identity = 124/164 (75.61%), Postives = 140/164 (85.37%), Query Frame = 2

Query: 1853 IDYLHRTGRTARMGAKGKVTSLVAKKDLLLAERIEEAIRKNESLESLTVDNVRRDTARTRITEQKGKNVKLFKTSNLKNKTKAVSASVRTSGKEPTIAKSVKSTXXXXXXXXXXXXXXSLETAKTSAVRKKNRSVGGSSEGKKLKVVGFRGQASSSKRESFTPS 2344
            IDYLHRTGRTARMGAKGKVTSLVAKK++LLAERIEEAIRKNESLESLT  NVRRD AR +ITEQKGKN KL K SN KNKTKAVSA +  SGK+P+IAKSVKS   A+PSKKI+KVSK++++AK S+V KKNRS G +S  KKL VVGFRG+ASSSK +SF  S
Sbjct:  456 IDYLHRTGRTARMGAKGKVTSLVAKKNVLLAERIEEAIRKNESLESLTAVNVRRDIARAQITEQKGKNAKLIKVSNQKNKTKAVSAHI--SGKKPSIAKSVKSPTAARPSKKIIKVSKNMKSAKASSVGKKNRSSGVNSTAKKLSVVGFRGRASSSKTDSFRRS 617

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0098040 vs. ExPASy TrEMBL
Match: A0A067K314_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22268 PE=4 SV=1)

HSP 1 Score: 494.967 bits (1273), Expect = 7.935e-160
Identity = 233/249 (93.57%), Postives = 239/249 (95.98%), Query Frame = 3

Query:  981 VFSVAKSISHHARFRSTMVSGGGRLRSQEDSLNNPIDMVVGTPGRVLQHIDDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLGPLKNRALKPSGQGFQTILVTATMTKAVQKLIDEEFQGIEHLRTSTLHKKIASARHDFIKLLGSENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLGENQISTVNYHGEVPPEQRVENLNKFKSDDGDCPTLVCTDLAARGLDLDVNHVVMFDFPLNSV 1727
            VF VAKSISHHARFRSTMVSGG RLR QEDSLNNPIDM+VGTPGR+LQHI+DGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLGPLKNRA KP GQGFQTILVTATMTKAVQKLIDEEFQGI HLRTSTLHKKIASARHDFIKL GSENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFL ENQ+STVNYHGEVP EQRVENL KFKSDDGDCPTLVCTDLAARGLDLDV+HV+MFDFPLNSV
Sbjct:  216 VFRVAKSISHHARFRSTMVSGGSRLRPQEDSLNNPIDMIVGTPGRLLQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLGPLKNRASKPDGQGFQTILVTATMTKAVQKLIDEEFQGIVHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLAENQMSTVNYHGEVPAEQRVENLQKFKSDDGDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSV 464

HSP 2 Score: 205.682 bits (522), Expect = 5.222e-53
Identity = 139/234 (59.40%), Postives = 161/234 (68.80%), Query Frame = 2

Query:  161 MAATSRTLLFVSLLSSPKHFSYYPFLK---PSRVFR--GFKPFCSAPSPILTTI-------------DPDDLKHSMLLERLRTRHLKHSAKLPSSSPSMPPQNLPVLGQETEAYDXXXXXXXXXIMADSFEELGLSEEVMGAVREMGIEVPTEIQCIGIPFVLEEKSVVLGSHTGSGKTLAYMLPLVQLLRRDEAILGMLTKPRRPRAVVLCPTRELSEQVLVTHPAMIWTSEF 808
            MA TSRTLL +SL S+ KH  Y+PFLK   PSRV     FKP C+A S   +                PD+ KHS+LLERLR RHLK S K P +    PP+    + +E + ++K K  KK   M  SFEELGLSEEVMGAVREM IEVPTEIQCIG+P +LE KSVVLGSHTGSGKTLAYMLPLVQLLR+DEA+LG+L KPRRPRAVVLCPTRELSEQV     ++   + F
Sbjct:    1 MAGTSRTLLSLSLSSATKH--YHPFLKFPKPSRVLLDFSFKPLCTATSTTASATATATATATTTTISGPDEEKHSILLERLRLRHLKDSRKHPQAKTQSPPKPSVAIEKEEDGFNKSKKGKK---MVGSFEELGLSEEVMGAVREMEIEVPTEIQCIGVPAILEGKSVVLGSHTGSGKTLAYMLPLVQLLRQDEALLGILMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARF 229

HSP 3 Score: 147.517 bits (371), Expect = 1.235e-33
Identity = 94/168 (55.95%), Postives = 112/168 (66.67%), Query Frame = 2

Query: 1853 IDYLHRTGRTARMGAKGKVTSLVAKKDLLLAERIEEAIRKNESLESLTVDNVRRDTARTRITEQKGKNVKLFKTSNLKNKTKAVSASVRTSGKEPTIAKSVKSTXXXXXXXXXXXXXXSLETAKTSAVRKK----NRSVGGSSEGKKLKVVGFRGQASSSKRESFTPS 2344
            ++YLHRTGRTARMGAKGKVTSLVAKKD+ LA RIEEAI+KNESLESLTVDNVRRD AR +IT QKGK+ KL K S  KNK KA  ASV++S      + SV  +  A  + K VK      + KTS V  K     +S G  S   KL VV  RG++S+S ++S   S
Sbjct:  464 VNYLHRTGRTARMGAKGKVTSLVAKKDVQLATRIEEAIKKNESLESLTVDNVRRDIARAQITAQKGKSAKLMKQSTQKNKIKA--ASVKSSTDHTKASSSVNKSVKAVKAAKTVKF-----SKKTSQVLNKRTGSKKSSGVKSTASKLSVVPLRGRSSASNKKSLRSS 624

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0098040 vs. ExPASy TrEMBL
Match: U5GD25_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s22020g PE=4 SV=1)

HSP 1 Score: 493.812 bits (1270), Expect = 4.442e-159
Identity = 232/249 (93.17%), Postives = 236/249 (94.78%), Query Frame = 3

Query:  981 VFSVAKSISHHARFRSTMVSGGGRLRSQEDSLNNPIDMVVGTPGRVLQHIDDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLGPLKNRALKPSGQGFQTILVTATMTKAVQKLIDEEFQGIEHLRTSTLHKKIASARHDFIKLLGSENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLGENQISTVNYHGEVPPEQRVENLNKFKSDDGDCPTLVCTDLAARGLDLDVNHVVMFDFPLNSV 1727
            VF VAKSI HHARFRSTMVSGGGR+R QEDSLNNPIDMVVGTPGRVLQHI DGNMVYGDIKYLVLDEADTMFDRGFGPDI KFLGPLKNR  K  GQGFQTILVTATMTKAVQKLIDEEFQGIEHLRTSTLHKKIASARHDFIKL GSENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRA DHFL ENQISTVNYHGEVP EQRVENLNKFKSDDGDCPTLVCTDLAARGLDLDV+HV+MFDFPLNS+
Sbjct:  213 VFRVAKSIGHHARFRSTMVSGGGRMRPQEDSLNNPIDMVVGTPGRVLQHIQDGNMVYGDIKYLVLDEADTMFDRGFGPDIHKFLGPLKNRTSKSDGQGFQTILVTATMTKAVQKLIDEEFQGIEHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAADHFLAENQISTVNYHGEVPAEQRVENLNKFKSDDGDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSI 461

HSP 2 Score: 196.052 bits (497), Expect = 1.463e-49
Identity = 123/192 (64.06%), Postives = 141/192 (73.44%), Query Frame = 2

Query:  224 YYPFLK----PSRVFRGF--KPFCSAPSPILTTIDPDDLKHSMLLERLRTRHLKHSAKLPSSSPSMPPQNLPVL---GQETEAYDXXXXXXXXXIMADSFEELGLSEEVMGAVREMGIEVPTEIQCIGIPFVLEEKSVVLGSHTGSGKTLAYMLPLVQLLRRDEAILGMLTKPRRPRAVVLCPTRELSEQVL 772
            Y+ FLK    P+RV  GF  +P C+  S    T + D++KHS+LLERLR RHLK S K   +         PV+   G+E E  D  K  KK K +A SFEELGLSEEVMGAV+EMGIEVPTEIQCIGIP +L+ ++VVLGSHTGSGKTLAYMLPLVQLLRRDEA+LG L KPRRPRAVVLCPTRELSEQV 
Sbjct:   26 YHTFLKLPKKPTRVLLGFNFRPLCTLSSTTAAT-ERDEVKHSILLERLRLRHLKGSKKPQLTDTQTQTALKPVVLIEGEEEE--DGFKKSKKGKKIAGSFEELGLSEEVMGAVKEMGIEVPTEIQCIGIPAILDSRTVVLGSHTGSGKTLAYMLPLVQLLRRDEALLGRLMKPRRPRAVVLCPTRELSEQVF 214

HSP 3 Score: 150.599 bits (379), Expect = 1.790e-34
Identity = 98/190 (51.58%), Postives = 120/190 (63.16%), Query Frame = 2

Query: 1853 IDYLHRTGRTARMGAKGKVTSLVAKKDLLLAERIEEAIRKNESLESLTVDNVRRDTARTRITEQKGKNVKLFKTSNLKNKTKA-----------VSASVRTSGKEPTIAKSVKSTXXXXXXXXX----------XXXXXSLETAK----TSAVRKKNRSVGGSSEGKKLKVVGFRGQASSS-KRESFTPS 2344
            IDYLHRTGRTARMGAKGKVTSLVA+KD  LA RIEEA+RKNESLESLTVDNVRRD AR RITEQ+GK+ KL K SN K+  K+            ++SV  SGK  T A++  ST+    +              K  K+++ AK    +SA   +  S G   +  KL+VV FRG++SSS K+ES  PS
Sbjct:  461 IDYLHRTGRTARMGAKGKVTSLVARKDQQLAARIEEAMRKNESLESLTVDNVRRDIARARITEQQGKSAKLIKASNQKSNNKSATDKPPSARTKATSSVMKSGKPSTSARTKASTSVRTKATSSVKKYGKASTPAKSVKAVKVAKRVKSSSASYSRKTSPGVKKQVGKLRVVAFRGRSSSSNKKESLRPS 650

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0098040 vs. ExPASy TrEMBL
Match: B9SM71_RICCO (Dead box ATP-dependent RNA helicase, putative OS=Ricinus communis GN=RCOM_0296470 PE=4 SV=1)

HSP 1 Score: 491.115 bits (1263), Expect = 1.110e-158
Identity = 232/249 (93.17%), Postives = 239/249 (95.98%), Query Frame = 3

Query:  981 VFSVAKSISHHARFRSTMVSGGGRLRSQEDSLNNPIDMVVGTPGRVLQHIDDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLGPLKNRALKPSGQGFQTILVTATMTKAVQKLIDEEFQGIEHLRTSTLHKKIASARHDFIKLLGSENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLGENQISTVNYHGEVPPEQRVENLNKFKSDDGDCPTLVCTDLAARGLDLDVNHVVMFDFPLNSV 1727
            VF VAKSISHHARFRSTMVSGGGR+R QEDSLN+PIDM+VGTPGR+LQHI+DGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLGPLKNRA KP G GFQTILVTATMTKAVQKLIDEEFQGI HLRTSTLHKKIASARHDFIKL GSENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFL ENQISTVNYHGEVP EQRVENL KFKSDDGDCPTLVCTDLAARGLDLDV+HVVMFDFPLNS+
Sbjct:  214 VFRVAKSISHHARFRSTMVSGGGRMRPQEDSLNSPIDMIVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLGPLKNRASKPDGLGFQTILVTATMTKAVQKLIDEEFQGIVHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLAENQISTVNYHGEVPAEQRVENLQKFKSDDGDCPTLVCTDLAARGLDLDVDHVVMFDFPLNSI 462

HSP 2 Score: 204.527 bits (519), Expect = 8.604e-53
Identity = 130/212 (61.32%), Postives = 145/212 (68.40%), Query Frame = 2

Query:  212 KHFSYYPFL---KPSRVFRGF--KPFCSAPSPILTTI--------DPDDLKHSMLLERLRTRHLKHSAKLPSSSPSMPPQNLPVLGQETEAYDXXXXXXXXXIMADSFEELGLSEEVMGAVREMGIEVPTEIQCIGIPFVLEEKSVVLGSHTGSGKTLAYMLPLVQLLRRDEAILGMLTKPRRPRAVVLCPTRELSEQVLVTHPAMIWTSEF 808
            KH  YYPFL   KPSRV  GF  KP C+  +    T         DPD  KHS+LLERLR RHLK+S+K          Q   V+  ETE  D     KK K +A SFEEL LS+EVMGAVREM IEVPTEIQCIGIP VL+ KSVVLGSHTGSGKTLAYMLPLVQLLRRDEA+LG+L KPRRPRA+VLCPTRELSEQV     ++   + F
Sbjct:   18 KH--YYPFLRFPKPSRVLLGFNFKPLCTTTASATVTETSTTTTFSDPDQAKHSILLERLRLRHLKNSSKTQQLKTQTQTQTKLVVNVETEKDDSFNKSKKGKKIAGSFEELSLSDEVMGAVREMEIEVPTEIQCIGIPAVLDGKSVVLGSHTGSGKTLAYMLPLVQLLRRDEALLGLLMKPRRPRAIVLCPTRELSEQVFRVAKSISHHARF 227

HSP 3 Score: 68.1662 bits (165), Expect = 2.159e-8
Identity = 48/115 (41.74%), Postives = 54/115 (46.96%), Query Frame = 2

Query: 1853 IDYLHRTGRTARMGAKGKVTSLVAKKDLLLAERIEEAIRKNESLESLTVDNVRRDTARTRITEQKGKNVKLFKTSNLKNKTKAV-----------SASVRTSGKEPTIAKSVKST 2164
            IDYLHRTGRTARMGAK                                 DNVRRD AR +ITEQKGK  KL K S+ KNK   +           ++SV  S K  T AKSVK+ 
Sbjct:  462 IDYLHRTGRTARMGAK---------------------------------DNVRRDIARAQITEQKGKKAKLIKLSSQKNKINTIADKSSTNSTKAASSVNKSRKASTPAKSVKAV 543

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0098040 vs. ExPASy TrEMBL
Match: B9H7X6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s22020g PE=4 SV=2)

HSP 1 Score: 488.804 bits (1257), Expect = 3.644e-158
Identity = 232/249 (93.17%), Postives = 236/249 (94.78%), Query Frame = 3

Query:  981 VFSVAKSISHHARFRSTMVSGGGRLRSQEDSLNNPIDMVVGTPGRVLQHIDDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLGPLKNRALKPSGQGFQTILVTATMTKAVQKLIDEEFQGIEHLRTSTLHKKIASARHDFIKLLGSENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLGENQISTVNYHGEVPPEQRVENLNKFKSDDGDCPTLVCTDLAARGLDLDVNHVVMFDFPLNSV 1727
            VF VAKSI HHARFRSTMVSGGGR+R QEDSLNNPIDMVVGTPGRVLQHI DGNMVYGDIKYLVLDEADTMFDRGFGPDI KFLGPLKNR  K  GQGFQTILVTATMTKAVQKLIDEEFQGIEHLRTSTLHKKIASARHDFIKL GSENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRA DHFL ENQISTVNYHGEVP EQRVENLNKFKSDDGDCPTLVCTDLAARGLDLDV+HV+MFDFPLNS+
Sbjct:  213 VFRVAKSIGHHARFRSTMVSGGGRMRPQEDSLNNPIDMVVGTPGRVLQHIQDGNMVYGDIKYLVLDEADTMFDRGFGPDIHKFLGPLKNRTSKSDGQGFQTILVTATMTKAVQKLIDEEFQGIEHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAADHFLAENQISTVNYHGEVPAEQRVENLNKFKSDDGDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSI 461

HSP 2 Score: 194.512 bits (493), Expect = 1.843e-49
Identity = 123/191 (64.40%), Postives = 141/191 (73.82%), Query Frame = 2

Query:  224 YYPFLK----PSRVFRGF--KPFCSAPSPILTTIDPDDLKHSMLLERLRTRHLKHSAKLPSSSPSMPPQNLP--VLGQETEAYDXXXXXXXXXIMADSFEELGLSEEVMGAVREMGIEVPTEIQCIGIPFVLEEKSVVLGSHTGSGKTLAYMLPLVQLLRRDEAILGMLTKPRRPRAVVLCPTRELSEQVL 772
            Y+ FLK    P+RV  GF  +P C+  S    T + D++KHS+LLERLR RHLK S K P  + +     L   VL +  E  D  K  KK K +A SFEELGLSEEVMGAV+EMGIEVPTEIQCIGIP +L+ ++VVLGSHTGSGKTLAYMLPLVQLLRRDEA+LG L KPRRPRAVVLCPTRELSEQV 
Sbjct:   26 YHTFLKLPKKPTRVLLGFNFRPLCTLSSTTAAT-ERDEVKHSILLERLRLRHLKGSKK-PQLTDTQTQTALKPVVLIEGEEEEDGFKKSKKGKKIAGSFEELGLSEEVMGAVKEMGIEVPTEIQCIGIPAILDSRTVVLGSHTGSGKTLAYMLPLVQLLRRDEALLGRLMKPRRPRAVVLCPTRELSEQVF 214

HSP 3 Score: 134.806 bits (338), Expect = 1.334e-29
Identity = 66/82 (80.49%), Postives = 71/82 (86.59%), Query Frame = 2

Query: 1853 IDYLHRTGRTARMGAKGKVTSLVAKKDLLLAERIEEAIRKNESLESLTVDNVRRDTARTRITEQKGKNVKLFKTSNLKNKTK 2098
            IDYLHRTGRTARMGAKGKVTSLVA+KD  LA RIEEA+RKNESLESLTVDNVRRD AR RITEQ+GK+ KL K SN K+  K
Sbjct:  461 IDYLHRTGRTARMGAKGKVTSLVARKDQQLAARIEEAMRKNESLESLTVDNVRRDIARARITEQQGKSAKLIKASNQKSNNK 542

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0098040 vs. ExPASy TrEMBL
Match: A0A067DC73_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g047490mg PE=4 SV=1)

HSP 1 Score: 476.093 bits (1224), Expect = 5.136e-157
Identity = 225/249 (90.36%), Postives = 240/249 (96.39%), Query Frame = 3

Query:  981 VFSVAKSISHHARFRSTMVSGGGRLRSQEDSLNNPIDMVVGTPGRVLQHIDDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLGPLKNRALKPSGQGFQTILVTATMTKAVQKLIDEEFQGIEHLRTSTLHKKIASARHDFIKLLGSENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLGENQISTVNYHGEVPPEQRVENLNKFKSDDGDCPTLVCTDLAARGLDLDVNHVVMFDFPLNSV 1727
            VF VAKSISHHARFRSTMVSGGGRLR QEDSLNNPIDMVVGTPGR+LQHI+DGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFL PLKNRA KP+GQGFQT+LV+ATMTKAVQKL+DEE QGI HLRTSTLHKKIASARHDFIKL GSENKLEALLQVLEPSL+KGN+VMVFCNTLNSSRAVDHFL ENQISTVNYHGEVP ++RVENLNKFK++DGDCPTLVCTDLAARGLDLDV+HV+MFDFPLNS+
Sbjct:   33 VFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSI 281

HSP 2 Score: 87.0409 bits (214), Expect = 3.841e-15
Identity = 41/43 (95.35%), Postives = 43/43 (100.00%), Query Frame = 2

Query: 1853 IDYLHRTGRTARMGAKGKVTSLVAKKDLLLAERIEEAIRKNES 1981
            IDYLHRTGRTARMGAKGKVTSLVAKKD+LLA+RIEEAIRKNES
Sbjct:  281 IDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAIRKNES 323

HSP 3 Score: 68.5514 bits (166), Expect = 5.745e-9
Identity = 29/34 (85.29%), Postives = 31/34 (91.18%), Query Frame = 2

Query:  671 LLRRDEAILGMLTKPRRPRAVVLCPTRELSEQVL 772
            LLR DEA+LG+L KPRRPRAVVLCPTRELSEQV 
Sbjct:    1 LLRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVF 34

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0098040 vs. ExPASy TrEMBL
Match: V4SJ90_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10000567mg PE=4 SV=1)

HSP 1 Score: 486.878 bits (1252), Expect = 1.196e-156
Identity = 226/249 (90.76%), Postives = 241/249 (96.79%), Query Frame = 3

Query:  981 VFSVAKSISHHARFRSTMVSGGGRLRSQEDSLNNPIDMVVGTPGRVLQHIDDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLGPLKNRALKPSGQGFQTILVTATMTKAVQKLIDEEFQGIEHLRTSTLHKKIASARHDFIKLLGSENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLGENQISTVNYHGEVPPEQRVENLNKFKSDDGDCPTLVCTDLAARGLDLDVNHVVMFDFPLNSV 1727
            VF VAKSISHHARFRSTMVSGGGRLR QEDSLNNPIDMVVGTPGR+LQHI+DGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFL PLKNRA KP+GQGFQT+LV+ATMTKAVQKL+DEEFQGI HLRTSTLHKKIASARHDFIKL GSENKLEALLQVLEPSL+KGN+VMVFCNTLNSSRAVDHFL ENQISTVNYHGEVP ++RVENLNKFK++DGDCPTLVCTDLAARGLDLDV+HV+MFDFPLNS+
Sbjct:  213 VFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLAPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEEFQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSI 461

HSP 2 Score: 225.713 bits (574), Expect = 1.179e-59
Identity = 138/230 (60.00%), Postives = 168/230 (73.04%), Query Frame = 2

Query:  146 MQKAMMAATSRTLLFVSLLSSPKHFSYYPFLK----PS-RVFRGFKPFCSAPSPILTTI---DPDDLKHSMLLERLRTRHLKHSAKLPSSSPSMPPQNLPVLGQETEAYDXXXXXXXXXIMA-DSFEELGLSEEVMGAVREMGIEVPTEIQCIGIPFVLEEKSVVLGSHTGSGKTLAYMLPLVQLLRRDEAILGMLTKPRRPRAVVLCPTRELSEQVLVTHPAMIWTSEF 808
            MQ AM  AT++T+L +SLLSS K   Y PFLK    PS RVF GF+  CS  +P  T      P+ ++HS+LL+RLR RHLK  +K  ++  S   ++L  + +E +  D  + KKKKK+++  SFEELGLSEE+MGAVREMGIEVPTEIQCIGIP VL+ KSVVLGSHTGSGKTLAYMLPLVQLLR DEA+LG+L KPRRPRAVVLCPTRELSEQV     ++   + F
Sbjct:    1 MQNAMALATTKTILSLSLLSSAKR--YRPFLKFPKNPSFRVFPGFRSLCSTSAPTATIEPPESPEQVRHSILLDRLRARHLKGPSK--TTPQSKTQESLTSIAREGKGEDFDEKKKKKKVVSVGSFEELGLSEEIMGAVREMGIEVPTEIQCIGIPAVLDGKSVVLGSHTGSGKTLAYMLPLVQLLRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARF 226

HSP 3 Score: 159.073 bits (401), Expect = 2.659e-37
Identity = 105/177 (59.32%), Postives = 125/177 (70.62%), Query Frame = 2

Query: 1853 IDYLHRTGRTARMGAKGKVTSLVAKKDLLLAERIEEAIRKNESLESLTVDNVRRDTARTRITEQKGKN-VKLFKTSNLKNKTK-AVSASVRTSGKEPTIAKSVKSTXXXXXXXXXXXXXXSLET----------AKTSAVRKKNRSVGGSSEGKKLKVVGFRGQAS-SSKRESFTPS 2344
            IDYLHRTGRTARMGAKGKVTSLVAKKD+LLA+RIEEAIRKNESL++LT DNVRRD ARTRITEQKGK   KL K S  KNKTK A+  S +TSG++ ++ KS K++ PAK SK  VK+SK ++T          + +       +   G S   KL VVGFRG+AS S K+ S  PS
Sbjct:  461 IDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAIRKNESLDALTKDNVRRDVARTRITEQKGKTAAKLMKVSRQKNKTKAALEKSSQTSGRKSSVTKSGKASTPAKSSKAAVKISKPVKTFTGSRKSSPASSSRKASSGGKMGAGKSGASKLSVVGFRGRASYSDKKASLRPS 637

The following BLAST results are available for this feature:

BLAST of g.barbadense_cottongen_reftransV1_0098040 vs. ExPASy Swiss-Prot
BLAST of g.barbadense_cottongen_reftransV1_0098040 vs. ExPASy TrEMBL

BLAST of g.barbadense_cottongen_reftransV1_0098040 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 25


Match Name	E-value	Identity	Description
DBP3_LODEL	2.297e-24	29.70	ATP-dependent RNA helicase DBP3 OS=Lodderomyces el...	[more]
DDX4_HUMAN	2.360e-24	31.35	Probable ATP-dependent RNA helicase DDX4 OS=Homo s...	[more]
DED1_PHANO	2.599e-24	30.83	ATP-dependent RNA helicase DED1 OS=Phaeosphaeria n...	[more]
RH52C_ORYSJ	2.982e-24	30.89	DEAD-box ATP-dependent RNA helicase 52C OS=Oryza s...	[more]
DBP2_PICST	3.042e-24	31.09	ATP-dependent RNA helicase DBP2 OS=Scheffersomyces...	[more]

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BLAST of g.barbadense_cottongen_reftransV1_0098040 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0B0PKP3_GOSAR	4.528e-167	97.59	DEAD-box ATP-dependent RNA helicase 39-like protei...	[more]
A0A0D2UBN8_GOSRA	1.763e-165	96.79	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2V9X0_GOSRA	1.823e-165	96.79	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A061FHR1_THECC	1.399e-161	94.78	DEAD-box ATP-dependent RNA helicase 39 isoform 1 O...	[more]
A0A067K314_JATCU	7.935e-160	93.57	Uncharacterized protein OS=Jatropha curcas GN=JCGZ...	[more]
U5GD25_POPTR	4.442e-159	93.17	Uncharacterized protein OS=Populus trichocarpa GN=...	[more]
B9SM71_RICCO	1.110e-158	93.17	Dead box ATP-dependent RNA helicase, putative OS=R...	[more]
B9H7X6_POPTR	3.644e-158	93.17	Uncharacterized protein OS=Populus trichocarpa GN=...	[more]
A0A067DC73_CITSI	5.136e-157	90.36	Uncharacterized protein (Fragment) OS=Citrus sinen...	[more]
V4SJ90_9ROSI	1.196e-156	90.76	Uncharacterized protein OS=Citrus clementina GN=CI...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001650	Helicase, C-terminal	SMART	SM00490	helicmild6	coord: 163..230 e-value: 5.6E-8 score: 42.5
IPR001650	Helicase, C-terminal	PFAM	PF00271	Helicase_C	coord: 134..231 e-value: 1.8E-18 score: 66.8
IPR001650	Helicase, C-terminal	PROSITE	PS51194	HELICASE_CTER	coord: 134..243 score: 11.868
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 131..235 e-value: 1.7E-25 score: 88.7
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 2..114 e-value: 5.8E-26 score: 90.3
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 3..233
IPR011545	DEAD/DEAH box helicase domain	PFAM	PF00270	DEAD	coord: 3..98 e-value: 1.5E-18 score: 67.1
None	No IPR available	PANTHER	PTHR24031:SF247	DEAD-BOX ATP-DEPENDENT RNA HELICASE 39	coord: 1..232
None	No IPR available	PANTHER	PTHR24031	RNA HELICASE	coord: 1..232
IPR014001	Helicase superfamily 1/2, ATP-binding domain	PROSITE	PS51192	HELICASE_ATP_BIND_1	coord: 1..109 score: 16.495

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.barbadense_cottongen_reftransV1_0098040 ID=g.barbadense_cottongen_reftransV1_0098040; Name=g.barbadense_cottongen_reftransV1_0098040; organism=Gossypium barbadense; type=contig; length=2758bp
CTACTCCCAAAGTCCCAAGAGAAAATGGATGATATTGGGACCTTACCTCC
CTAGTGCCTTGAAAGCTTCGCTAATGCTGCAAACAAATACAAAGTAGCAG
CAGGGAAAACAAAACCAAAAACTATATCTGGCCTCACAGAACATGATGCA
GAAAGCTATGATGGCTGCTACTTCAAGAACTCTCCTTTTTGTCTCTCTTC
TTTCCTCTCCCAAACATTTCTCTTACTACCCTTTTCTCAAACCCTCTAGG
GTTTTTCGAGGGTTTAAGCCTTTCTGCTCTGCCCCATCCCCAATCCTCAC
CACCATTGATCCTGACGACTTGAAACACTCCATGCTACTTGAAAGGCTTA
GAACCAGACATCTCAAACATTCTGCGAAACTCCCATCCTCATCACCCTCT
ATGCCTCCACAAAACCTGCCTGTTTTGGGTCAAGAGACCGAGGCTTATGA
TAAGGGGAAAGGGAAAAAGAAGAAGAAAATTATGGCCGATAGTTTTGAGG
AGTTGGGTTTGAGTGAAGAAGTGATGGGTGCTGTTAGAGAGATGGGGATT
GAAGTTCCTACTGAGATTCAGTGTATCGGGATTCCTTTTGTATTGGAAGA
GAAAAGTGTGGTTTTGGGTTCTCATACTGGCTCTGGCAAGACTCTTGCAT
ACATGTTGCCACTTGTTCAGTTGCTGAGGCGGGATGAGGCAATATTAGGC
ATGCTAACAAAGCCCAGGCGTCCACGAGCCGTTGTTCTATGCCCCACAAG
AGAGCTGTCTGAGCAGGTTTTGGTTACTCACCCTGCTATGATTTGGACCT
CCGAATTTGTTCTATATTTATAGACTTTGACTTTTATCACTTGGGAGCAT
CCAAGATGAAAGTCTCTTGCACAGTTTTGAGTGAGAGAAAGAATAGAGGA
ATCCTCTTTTCGACTCTTACTCTCCCACTCTGCTCACTTCTTTTCTTTTT
GTTACTAGATTAATGTTAGTGGCTTTTTAGGTTTTTAGTGTGGCAAAGTC
TATTAGCCATCATGCAAGATTTAGGTCTACTATGGTCAGTGGGGGAGGCC
GGTTAAGATCACAAGAGGACTCTTTGAATAACCCAATTGACATGGTAGTT
GGGACCCCTGGTAGGGTCCTTCAACATATTGATGACGGGAACATGGTTTA
TGGTGACATCAAATACTTGGTTTTGGATGAGGCTGACACTATGTTTGACC
GTGGCTTTGGTCCTGACATTCGCAAGTTTCTTGGTCCATTAAAAAATCGT
GCTCTAAAACCCAGTGGCCAAGGATTTCAAACTATTTTAGTGACAGCTAC
AATGACAAAGGCTGTGCAGAAACTGATTGATGAGGAATTTCAAGGAATAG
AACATCTACGAACATCAACACTGCACAAGAAAATAGCATCTGCTCGTCAT
GATTTCATCAAACTTTTGGGTTCTGAAAACAAGCTGGAAGCATTACTGCA
GGTTCTTGAGCCAAGTTTAGCTAAGGGGAACAGAGTAATGGTGTTTTGTA
ATACATTAAATTCTAGCCGTGCTGTTGATCATTTTCTTGGTGAAAATCAG
ATCTCTACTGTAAATTACCATGGCGAGGTGCCTCCAGAACAAAGGGTTGA
AAACCTGAACAAGTTCAAGAGTGATGATGGAGACTGTCCCACATTGGTTT
GCACGGACTTGGCTGCTAGAGGGCTGGACTTGGATGTTAATCATGTTGTC
ATGTTTGATTTCCCTTTAAACTCTGTAAGCAACATTTCTTTGATCAACTT
GTTTGGGTCTTAGCTTGCCCTTCTCTCAAACCTGAACTCCTTTGCTTTTG
TGCCCCCTTTCTTTATGGTTCTATTTTTTCTCACTTCTGTTTGGCCTTTT
AGATCGACTACCTTCATCGCACTGGAAGAACTGCACGAATGGGTGCCAAA
GGGAAAGTAACAAGTTTGGTGGCTAAAAAGGACTTATTGTTGGCAGAAAG
GATAGAGGAGGCAATAAGAAAGAATGAGAGTTTGGAATCTCTTACAGTTG
ATAATGTCCGAAGGGATACTGCAAGGACTCGGATTACCGAGCAGAAGGGG
AAGAATGTTAAACTGTTTAAGACGTCGAATCTGAAAAACAAGACCAAAGC
TGTGTCTGCATCTGTGCGGACATCAGGGAAAGAACCCACAATTGCAAAGT
CGGTAAAATCTACTGCTCCAGCCAAACCTTCAAAGAAAATAGTTAAGGTC
TCAAAAAGTTTGGAGACTGCAAAAACATCTGCCGTACGAAAGAAAAACAG
GTCAGTTGGTGGGAGTTCTGAAGGCAAAAAACTGAAGGTTGTTGGATTTA
GGGGACAAGCTTCCTCGAGCAAGAGAGAATCGTTTACACCAAGTTGATTG
TGGTCAAAGTTTGGAATTCTGCAAATGGCTTTTAACATGTTATCAATCAA
TAGTTGAAAAAAAAAATCATGTTAAATTCATATCTCTCTTATCTTAGCAC
TTAGAATTGATTGCAACACATCTATATTTGTTTTTCCACTTTGCACCCTT
AAAGGTTAGCTGAGGATGTCTTAGTGGGAGTTTATATTAGCCTGTTGTGC
AGAAAATTCATACATGGATTGGGGATAGAGATTTAAGGGTTCCCCCCCCC
CCCTCCTGTATGGATGGGTATTGATTTTGTTCCATTACGACTGTTAATGC
AACGCATAGAATTCAGTAGTGCTTAGGGTTATAAATATACCAGGAGGAGG
TTTGTTTTTACAGGATATTCTGATATTTTGAACATTTTCTATCAATTATG
TTGACAGG

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR001650	Helicase_C-like
IPR027417	P-loop_NTPase
IPR011545	DEAD/DEAH_box_helicase_dom
IPR014001	Helicase_ATP-bd

Vocabulary: **Molecular Function**
Term	Definition
GO:0005524	ATP binding
GO:0003676	nucleic acid binding

Search form

g.barbadense_cottongen_reftransV1_0098040, g.barbadense_cottongen_reftransV1_0098040 (contig) Gossypium barbadense

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