g.barbadense_cottongen_reftransV1_0098040, g.barbadense_cottongen_reftransV1_0098040 (contig) Gossypium barbadense
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0098040 vs. ExPASy Swiss-Prot
Match: DBP3_LODEL (ATP-dependent RNA helicase DBP3 OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=DBP3 PE=3 SV=2) HSP 1 Score: 112.079 bits (279), Expect = 2.297e-24 Identity = 79/266 (29.70%), Postives = 127/266 (47.74%), Query Frame = 3 Query: 939 SFLFVTRLMLVAF*VFSVAKSISHHARFRSTMVSGGGRLRSQEDSLNNPIDMVVGTPGRVLQHIDDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLGPLKNRALKPSGQGFQTILVTATMTKAVQKLIDEEFQ-----GIEHLRTSTLHKKIASARHDFIKLLGSENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLGENQISTVNYHGEVPPEQRVENLNKFKSDDGDCPTLVCTDLAARGLDL-DVNHVVMFDFPL 1718 S L ++ +A ++ + ++ + GG Q + N ++VV TPGR++ I+DG + I YLVLDEAD M ++GF DI+ +G QG QT++ TAT K V++L + I + +K+I E KL LLQ + + N+++VF + ++ L N+ HG++ +QR + L FKS G+C L+ TD+AARGLD+ +V +V+ FPL Sbjct: 197 SVLCISPTRELALQIYDNLEDLTRGTDVSCVAIYGGVSKDDQIKKIRNGANVVVATPGRLVDLINDGAVDLSSINYLVLDEADRMLEKGFEEDIKLIIGST-------PAQGRQTLMFTATWPKEVRELANNFMNQPVKVTIGDRDELSANKRITQIVEVLDDKFQKEKKLINLLQKYQNTGNGDNKILVFALYKKEASRIESLLHRNKFKVAAIHGDLSQQQRTQALQSFKS--GECNLLLATDVAARGLDIPNVKYVINLTFPL 453
BLAST of g.barbadense_cottongen_reftransV1_0098040 vs. ExPASy Swiss-Prot
Match: DDX4_HUMAN (Probable ATP-dependent RNA helicase DDX4 OS=Homo sapiens GN=DDX4 PE=1 SV=2) HSP 1 Score: 113.235 bits (282), Expect = 2.360e-24 Identity = 79/252 (31.35%), Postives = 129/252 (51.19%), Query Frame = 3 Query: 981 VFSVAKSISHHARFRSTMVSGGGRLRSQEDSLNNPIDMVVGTPGRVLQHIDDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLGPLKNRALKPSGQGFQTILVTATMTKAVQKLIDEEFQGIEHLRTSTLH---KKIASARHDF---IKLLGSENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLGENQISTVNYHGEVPPEQRVENLNKFKSDDGDCPTLVCTDLAARGLDLD-VNHVVMFDFP 1715 ++ A+ S R+ ++ GG +L + +++ TPGR++ I + IKYLVLDEAD M D GFGP+++K + + PS + QT++ +AT + +Q+L E L+++ L ++ A D + +G +K E L+++L R MVF T + + FL + +IST + HG+ +R + L F+ G CP LV T +AARGLD++ V HV+ FD P Sbjct: 381 IYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLI----SCPGMPSKEQRQTLMFSATFPEEIQRL------AAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSKREKLVEILRN--IGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRF--GKCPVLVATSVAARGLDIENVQHVINFDLP 618
BLAST of g.barbadense_cottongen_reftransV1_0098040 vs. ExPASy Swiss-Prot
Match: DED1_PHANO (ATP-dependent RNA helicase DED1 OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) GN=DED1 PE=3 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 2.599e-24 Identity = 82/266 (30.83%), Postives = 132/266 (49.62%), Query Frame = 3 Query: 936 TSFLFVTRLMLVAF*VFSVAKSISHHARFRSTMVSGGGRLRSQEDSLNNPIDMVVGTPGRVLQHIDDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLGPLKNRALKPSGQGFQTILVTATMTKAVQKLIDE---EFQGIEHLRTSTLHKKIASARHDFIKLLGSENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLGENQISTVNYHGEVPPEQRVENLNKFKSDDGDCPTLVCTDLAARGLDL-DVNHVVMFDFPLN 1721 TS + LV+ +F A+ ++ + R +V GG + SQ + D++V TPGR++ I+ G + IKYLVLDEAD M D GF P IR+ ++ + P+ G QT++ +AT + +Q L + E+ + R + + I I+ + +K LL +L A ++F T + ++ FL + HG+ +R + L F+S G CP LV T +AARGLD+ +V HVV +D P + Sbjct: 288 TSLILAPTRELVSQ-IFDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLASIKYLVLDEADRMLDMGFEPQIRRI---VEGEDMPPTA-GRQTLMFSATFPRDIQMLARDFLKEYIFLSVGRVGSTSENITQK----IEYVEDADKRSVLLDILHTHGA--GLSLIFVETKRMADSLSDFLINQGFPATSIHGDRTQREREKALEMFRS--GRCPILVATAVAARGLDIPNVTHVVNYDLPTD 540
BLAST of g.barbadense_cottongen_reftransV1_0098040 vs. ExPASy Swiss-Prot
Match: RH52C_ORYSJ (DEAD-box ATP-dependent RNA helicase 52C OS=Oryza sativa subsp. japonica GN=Os11g0599500 PE=3 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 2.982e-24 Identity = 76/246 (30.89%), Postives = 119/246 (48.37%), Query Frame = 3 Query: 993 AKSISHHARFRSTMVSGGGRLRSQEDSLNNPIDMVVGTPGRVLQHIDDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLGPLKNRALKPSGQGFQTILVTATMTKAVQKLIDEEFQGIEHLRTSTLHKK--IASARHDFIKLLGSENKLEALLQVLEPSLAKGNR--VMVFCNTLNSSRAVDHFLGENQISTVNYHGEVPPEQRVENLNKFKSDDGDCPTLVCTDLAARGLDLD-VNHVVMFDFP 1715 A+ S+ R + GG + Q L +D++V TPGR++ ++ + I+YL LDEAD M D GF P +R+ + + + P G QT+L +AT K +Q++ + + L + + R +F++ + L LL S G +VF T + +++H+L N + HG+ ++R L FKS G P LV TD+AARGLD+ V HVV FD P Sbjct: 255 ARKFSYQTGVRVVVAYGGAPINQQLRDLERGVDILVATPGRLVDLLERARVSLQSIRYLALDEADRMLDMGFEPQVRRIVEQMD---MPPPG-ARQTMLFSATFPKEIQRMASDFLENYIFLAVGRVGSSTDLIVQRVEFVQEADKRSHLMDLLHAQRDSATPGKPTLTLVFVETKRGADSLEHWLCMNGFPATSIHGDRNQQEREYALRSFKS--GHTPILVATDVAARGLDIPHVAHVVNFDLP 494
BLAST of g.barbadense_cottongen_reftransV1_0098040 vs. ExPASy Swiss-Prot
Match: DBP2_PICST (ATP-dependent RNA helicase DBP2 OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) GN=DBP2 PE=3 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 3.042e-24 Identity = 74/238 (31.09%), Postives = 122/238 (51.26%), Query Frame = 3 Query: 1014 ARFRSTMVSGGGRLRSQEDSLNNPIDMVVGTPGRVLQHIDDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLGPLKNRALKPSGQGFQTILVTATMTKAVQKLIDEEFQGIEHLRTSTLHKKIASARHDFIKLLGSENKLEALLQVLEPSLA-KGNRVMVFCNTLNSSRAVDHFLGENQISTVNYHGEVPPEQRVENLNKFKSDDGDCPTLVCTDLAARGLDLD-VNHVVMFDFPLN 1721 +R R+T V GG Q L +++V+ TPGR++ ++ G + YLVLDEAD M D GF P IRK + ++P QT++ +AT K VQ L + Q +R +L + ++++ K + L++ LE + K ++V++F +T + V +L + + HG+ +R L +FK+ G P +V TD+AARG+D+ +N V+ FD P N Sbjct: 197 SRIRNTCVYGGAPKGQQIRDLARGVEIVIATPGRLIDMLEMGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVD-----QIRPDR---QTLMWSATWPKEVQNLARDYLQDPIQVRIGSLELAASHTITQVVEVISEYEKRDRLVKHLETATTEKESKVLIFASTKKTCDEVTSYLRADGWPALAIHGDKQQSERDWVLREFKT--GKSPIMVATDVAARGIDVKGINFVINFDMPGN 424 HSP 2 Score: 61.6178 bits (148), Expect = 2.383e-8 Identity = 36/93 (38.71%), Postives = 51/93 (54.84%), Query Frame = 2 Query: 491 SFEELGLSEEVMGAVREMGIEVPTEIQCIGIPFVLEEKSVVLGSHTGSGKTLAYMLPLVQLLRRDEAILGMLTKPRRPRAVVLCPTRELSEQV 769 +F+E G E V+ V+ G PT IQC G P L + +V + TGSGKTL+Y LP + + +L+ P +VL PTREL+ Q+ Sbjct: 98 TFDEAGFPEYVLNEVKAQGFPSPTAIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPAIVHINAQP----LLSPGDGPVVLVLAPTRELAVQI 186
BLAST of g.barbadense_cottongen_reftransV1_0098040 vs. ExPASy TrEMBL
Match: J3KX36_ORYBR (Uncharacterized protein OS=Oryza brachyantha GN=OB01G15420 PE=4 SV=1) HSP 1 Score: 464.151 bits (1193), Expect = 1.605e-147 Identity = 213/249 (85.54%), Postives = 232/249 (93.17%), Query Frame = 3 Query: 981 VFSVAKSISHHARFRSTMVSGGGRLRSQEDSLNNPIDMVVGTPGRVLQHIDDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLGPLKNRALKPSGQGFQTILVTATMTKAVQKLIDEEFQGIEHLRTSTLHKKIASARHDFIKLLGSENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLGENQISTVNYHGEVPPEQRVENLNKFKSDDGDCPTLVCTDLAARGLDLDVNHVVMFDFPLNSV 1727 VF VAKSISHHARFRSTMVSGG R+R QEDSLN P+DMVVGTPGR+L HI DGNMVYGDIKYLVLDEADTMFD+GFGPDIRKFL PLKNRA KP QGFQT+LVTATMTKAVQKLIDEEF+GI HLRTST K++A+ARHDFIKL GSENKLEALLQVLEPSLAKGN++MVFCNTLNSSRAVDHFL ENQISTVNYHGEVP E+RVENLNKF++++GDCPTLVCTDLAARGLDLDV+HV+MFDFP NS+ Sbjct: 226 VFRVAKSISHHARFRSTMVSGGSRIRPQEDSLNMPVDMVVGTPGRILDHIKDGNMVYGDIKYLVLDEADTMFDQGFGPDIRKFLAPLKNRAAKPGDQGFQTVLVTATMTKAVQKLIDEEFEGIVHLRTSTFQKRVATARHDFIKLSGSENKLEALLQVLEPSLAKGNKIMVFCNTLNSSRAVDHFLTENQISTVNYHGEVPAEERVENLNKFRNEEGDCPTLVCTDLAARGLDLDVDHVIMFDFPSNSI 474 HSP 2 Score: 164.081 bits (414), Expect = 7.875e-39 Identity = 77/97 (79.38%), Postives = 84/97 (86.60%), Query Frame = 2 Query: 482 MADSFEELGLSEEVMGAVREMGIEVPTEIQCIGIPFVLEEKSVVLGSHTGSGKTLAYMLPLVQLLRRDEAILGMLTKPRRPRAVVLCPTRELSEQVL 772 + DSFEELGL EEVM A+ EMGI PTEIQC+G+P VL SVVLGSHTGSGKTLAY+LPLVQLLRRDEA+LGM KPRRPRAVVLCPTREL+EQV Sbjct: 131 VVDSFEELGLGEEVMAALGEMGISKPTEIQCVGVPSVLAGTSVVLGSHTGSGKTLAYLLPLVQLLRRDEAVLGMSMKPRRPRAVVLCPTRELTEQVF 227 HSP 3 Score: 103.219 bits (256), Expect = 2.293e-19 Identity = 77/181 (42.54%), Postives = 94/181 (51.93%), Query Frame = 2 Query: 1853 IDYLHRTGRTARMGAKGKVTSLVAKKDLLLAERIEEAIRKNESLESLTVDNVRRDTARTRITEQKGK-------NVKLFKTSNLKNKTKAVSASVRTSGKEPTIAKSVKSTXXXXXXXXXXXXXXSLETAKTSAVRKKNRSVGGSSE-------------------GKKLKVVGFRGQASS 2317 IDYLHRTGRTARMGAKGKVTSLVAKKD+ LA RIEEAI+KNESLE+LT +NVRR KG+ N K + L K+ V +S + + K +T+ + K SKS + K VR S GS + G KL VVGFRG++S Sbjct: 474 IDYLHRTGRTARMGAKGKVTSLVAKKDVALATRIEEAIKKNESLEALTTNNVRRAATSPHHASTKGRPSGLKVVNQKGRRGVALSTKSSRVVKDTTSSRRSSRVVKD--TTSRRRSPAKNQPKSKSTSSGKAKPVRSAKPSKSGSPKVAKSRPRPEGRKGDALNKLGTKLSVVGFRGRSSG 652
BLAST of g.barbadense_cottongen_reftransV1_0098040 vs. ExPASy TrEMBL
Match: K3XHI7_SETIT (Uncharacterized protein OS=Setaria italica GN=Si000707m.g PE=4 SV=1) HSP 1 Score: 456.062 bits (1172), Expect = 3.280e-147 Identity = 213/249 (85.54%), Postives = 232/249 (93.17%), Query Frame = 3 Query: 981 VFSVAKSISHHARFRSTMVSGGGRLRSQEDSLNNPIDMVVGTPGRVLQHIDDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLGPLKNRALKPSGQGFQTILVTATMTKAVQKLIDEEFQGIEHLRTSTLHKKIASARHDFIKLLGSENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLGENQISTVNYHGEVPPEQRVENLNKFKSDDGDCPTLVCTDLAARGLDLDVNHVVMFDFPLNSV 1727 V+ VAKSISHHARFRSTMVSGG RLR QEDSLN P+DMVVGTPGR+L HI DGNMVYGDIKYLVLDEADTMFD+GFGPDIRKFL PLKNRA KP QGFQT+LVTATMTKAVQKLIDEEF+GI HLRTST K++A+ARHDFIKL GSENKLEALLQVLEPSLAKGN++MVFCNTLNSSRAVDHFL ENQISTVNYHGEVP E+RVENLNKF++++GDCPTLVCTDLAARGLDLDV+HV+MFDFP NS+ Sbjct: 192 VYRVAKSISHHARFRSTMVSGGTRLRPQEDSLNMPVDMVVGTPGRILDHIKDGNMVYGDIKYLVLDEADTMFDQGFGPDIRKFLAPLKNRATKPGDQGFQTVLVTATMTKAVQKLIDEEFEGIVHLRTSTFQKRVATARHDFIKLTGSENKLEALLQVLEPSLAKGNKIMVFCNTLNSSRAVDHFLTENQISTVNYHGEVPAEERVENLNKFRNEEGDCPTLVCTDLAARGLDLDVDHVIMFDFPSNSI 440 HSP 2 Score: 162.925 bits (411), Expect = 2.802e-39 Identity = 84/127 (66.14%), Postives = 100/127 (78.74%), Query Frame = 2 Query: 389 SSPSMPPQNLPVLGQETEAYDXXXXXXXXXIMADSFEELGLSEEVMGAVREMGIEVPTEIQCIGIPFVLEEKSVVLGSHTGSGKTLAYMLPLVQLLRRDEAILGMLTKPRRPRAVVLCPTRELSEQV 769 SP++PP+ G E + +G++ + A+SFEELGL EEVM A+ EMGI PTEIQC+G+P VL+ SVVLGSHTGSGKTLAY+LPLVQLLRRDEA+LGM KPRRPRAVVLCPTREL+EQV Sbjct: 68 GSPNLPPRGKAARGGERTSQHPQQGRRVEA--AESFEELGLGEEVMAALGEMGISKPTEIQCVGVPAVLDGTSVVLGSHTGSGKTLAYLLPLVQLLRRDEAMLGMSMKPRRPRAVVLCPTRELTEQV 192
BLAST of g.barbadense_cottongen_reftransV1_0098040 vs. ExPASy TrEMBL
Match: A0A072UJK7_MEDTR (DEAD-box ATP-dependent RNA helicase OS=Medicago truncatula GN=MTR_6g039840 PE=4 SV=1) HSP 1 Score: 457.603 bits (1176), Expect = 3.690e-147 Identity = 211/249 (84.74%), Postives = 234/249 (93.98%), Query Frame = 3 Query: 981 VFSVAKSISHHARFRSTMVSGGGRLRSQEDSLNNPIDMVVGTPGRVLQHIDDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLGPLKNRALKPSGQGFQTILVTATMTKAVQKLIDEEFQGIEHLRTSTLHKKIASARHDFIKLLGSENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLGENQISTVNYHGEVPPEQRVENLNKFKSDDGDCPTLVCTDLAARGLDLDVNHVVMFDFPLNSV 1727 VF VAK+ISHHARFR TMVSGGGRLR QE+SL+NPIDMVVGTPGR+LQHI++GNMVYGDI+Y+VLDEADTMFDRGFGPDI+KFL PLK+RA KP GFQT+LVTATMTKAVQ L+DEEFQGI HLRTS+LHKKI++ARHDFIKL G+ENKL++LLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFL ENQISTVNYHGEVP QRVENLNKFKS++ DCPTLVCTDLAARGLDLDV+HV+MFDFPLNS+ Sbjct: 26 VFRVAKAISHHARFRCTMVSGGGRLRPQEESLSNPIDMVVGTPGRILQHIEEGNMVYGDIQYVVLDEADTMFDRGFGPDIKKFLAPLKHRASKPDSLGFQTVLVTATMTKAVQNLVDEEFQGIVHLRTSSLHKKISNARHDFIKLSGTENKLDSLLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLEENQISTVNYHGEVPAAQRVENLNKFKSNNDDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSI 274 HSP 2 Score: 102.064 bits (253), Expect = 2.909e-19 Identity = 50/79 (63.29%), Postives = 64/79 (81.01%), Query Frame = 2 Query: 1853 IDYLHRTGRTARMGAKGKVTSLVAKKDLLLAERIEEAIRKNESLESLTVDNVRRDTARTRITEQKGKNVKLFKTSNLKN 2089 IDYLHRTGRTARMGAKGK+TSLV KKD LA +IEEAI+KNE+LE++T ++VR D R +ITEQ+ KN + K S +++ Sbjct: 274 IDYLHRTGRTARMGAKGKITSLVTKKDYSLATKIEEAIKKNENLEAITKESVRMDVTRNQITEQRRKNKNVVKPSKVRD 352
BLAST of g.barbadense_cottongen_reftransV1_0098040 vs. ExPASy TrEMBL
Match: A0A022R984_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a002525mg PE=4 SV=1) HSP 1 Score: 462.996 bits (1190), Expect = 4.323e-147 Identity = 218/249 (87.55%), Postives = 233/249 (93.57%), Query Frame = 3 Query: 981 VFSVAKSISHHARFRSTMVSGGGRLRSQEDSLNNPIDMVVGTPGRVLQHIDDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLGPLKNRALKPSGQGFQTILVTATMTKAVQKLIDEEFQGIEHLRTSTLHKKIASARHDFIKLLGSENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLGENQISTVNYHGEVPPEQRVENLNKFKSDDGDCPTLVCTDLAARGLDLDVNHVVMFDFPLNSV 1727 VF VAKSISHHARFRSTMVSGGGR+R QEDSLN+PIDMVVGTPGRVLQHI++GNMVYGDI+YLVLDEADTMFDRGFGPDI KFL PLKNRA KP G FQT+LVTATMTK VQKL+D+EFQGI HLRTS+LHKKIA+ARHDFIKL GSENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFL ENQI TVNYHGEVP EQRVENL KFKS++GDCPTLVCTDLAARGLDLDV+HV+MFDFP NS+ Sbjct: 220 VFHVAKSISHHARFRSTMVSGGGRIRPQEDSLNSPIDMVVGTPGRVLQHIEEGNMVYGDIRYLVLDEADTMFDRGFGPDIHKFLAPLKNRASKPDGLEFQTVLVTATMTKPVQKLVDDEFQGIIHLRTSSLHKKIANARHDFIKLSGSENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLSENQILTVNYHGEVPAEQRVENLEKFKSNEGDCPTLVCTDLAARGLDLDVDHVIMFDFPSNSI 468 HSP 2 Score: 205.297 bits (521), Expect = 1.275e-52 Identity = 123/222 (55.41%), Postives = 144/222 (64.86%), Query Frame = 2 Query: 161 MAATSRTLLFVSLLSSPKHFSYYP----------FLKPSRV-FRGFKPFCSAP-SPILTTIDPDD----LKHSMLLERLRTRHLKHSAKLPSSSPSMPPQNLP--VLGQETEAYDXXXXXXXXXIMADSFEELGLSEEVMGAVREMGIEVPTEIQCIGIPFVLEEKSVVLGSHTGSGKTLAYMLPLVQLLRRDEAILGMLTKPRRPRAVVLCPTRELSEQVL 772 M T++ L F SLLS PK FS+ + P RV F F+P C+A + + ID + +KHS+LLERLR RHLK SA+ S S + P +L G+ E + K SFEELGLSEEV+GA+ EMGI VPTEIQCIG+P VL KSVVLGSHTGSGKTLAY+LPLVQLLRRDE + GML KPRRPRAVVLCPTREL EQV Sbjct: 1 MGTTAKVLSF-SLLSLPKRFSFNRPIYLSIPLNVYTTPYRVDFHRFRPLCTAAATATIPEIDETETLQPIKHSILLERLRQRHLKDSAQTFSKSVAANPSSLSGSKKGKNGEIEGSRRNKGGAADADSSFEELGLSEEVIGALVEMGISVPTEIQCIGMPAVLNGKSVVLGSHTGSGKTLAYLLPLVQLLRRDEELHGMLMKPRRPRAVVLCPTRELCEQVF 221 HSP 3 Score: 117.472 bits (293), Expect = 9.216e-24 Identity = 60/95 (63.16%), Postives = 74/95 (77.89%), Query Frame = 2 Query: 1853 IDYLHRTGRTARMGAKGKVTSLVAKKDLLLAERIEEAIRKNESLESLTVDNVRRDTARTRITEQKGKNVKLFKTSNLKNKTKAVSASVRTSGKEP 2137 IDYLHRTGRTARMGAKGKVTSLVA+K+ LA IEEA+ KNESLES++VD+++RD AR+ I+EQK KN ++ K SN +NK SA+ S EP Sbjct: 468 IDYLHRTGRTARMGAKGKVTSLVARKNTNLAALIEEALMKNESLESISVDSIKRDLARSHISEQKDKNERMVKGSNSRNKPATNSAAPTKSSYEP 562
BLAST of g.barbadense_cottongen_reftransV1_0098040 vs. ExPASy TrEMBL
Match: B8ADM4_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_00680 PE=4 SV=1) HSP 1 Score: 461.455 bits (1186), Expect = 4.875e-147 Identity = 213/249 (85.54%), Postives = 232/249 (93.17%), Query Frame = 3 Query: 981 VFSVAKSISHHARFRSTMVSGGGRLRSQEDSLNNPIDMVVGTPGRVLQHIDDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLGPLKNRALKPSGQGFQTILVTATMTKAVQKLIDEEFQGIEHLRTSTLHKKIASARHDFIKLLGSENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLGENQISTVNYHGEVPPEQRVENLNKFKSDDGDCPTLVCTDLAARGLDLDVNHVVMFDFPLNSV 1727 VF VAKSISHHARFRSTMVSGG R+R QEDSLN P+DMVVGTPGR+L HI DGNMVYGDIKYLVLDEADTMFD+GFGPDIRKFL PLKNRA KP QGFQT+LVTATMTKAVQKLIDEEF+GI HLRT+T K++A+ARHDFIKL GSENKLEALLQVLEPSLAKGN+VMVFCNTLNSSRAVDHFL ENQISTVNYHGEVP E+RVENLNKF++++GDCPTLVCTDLAARGLDLDV+HV+MFDFP NS+ Sbjct: 201 VFRVAKSISHHARFRSTMVSGGSRIRPQEDSLNMPVDMVVGTPGRILDHIKDGNMVYGDIKYLVLDEADTMFDQGFGPDIRKFLAPLKNRAAKPGDQGFQTVLVTATMTKAVQKLIDEEFEGIVHLRTTTFQKRVATARHDFIKLSGSENKLEALLQVLEPSLAKGNKVMVFCNTLNSSRAVDHFLTENQISTVNYHGEVPAEERVENLNKFRNEEGDCPTLVCTDLAARGLDLDVDHVIMFDFPSNSI 449 HSP 2 Score: 171.4 bits (433), Expect = 1.937e-41 Identity = 94/162 (58.02%), Postives = 115/162 (70.99%), Query Frame = 2 Query: 323 KHSMLLERLRTRHLKHSAKLPSSSPSMPPQNLPVLGQETEAYDXXXXXXXXXIMADSFEELGLSEEVMGAVREMGIEVPTEIQCIGIPFVLEEKSVVLGSHTGSGKTLAYMLPLVQLLRRDEAILGMLTKPRRPRAVVLCPTRELSEQVLVTHPAMIWTSEF 808 +H +LLERLR RHLK +P+++P P Q G + +K++ + +SFEELGL EEVM A+ EMGI PTEIQC+G+P VL SVVLGSHTGSGKTLAY+LPLVQLLRRDEA+LGM KPRRPRAVVLCPTREL+EQV ++ + F Sbjct: 60 RHELLLERLRQRHLKG---VPAATPR-PAQREKGRGG---GGAQELQQKRRVEVVESFEELGLGEEVMAALGEMGISKPTEIQCVGVPAVLAGTSVVLGSHTGSGKTLAYLLPLVQLLRRDEAMLGMSMKPRRPRAVVLCPTRELTEQVFRVAKSISHHARF 214 HSP 3 Score: 87.8113 bits (216), Expect = 1.654e-14 Identity = 66/169 (39.05%), Postives = 88/169 (52.07%), Query Frame = 2 Query: 1853 IDYLHRTGRTARMGAKGKVTSLVAKKDLLLAERIEEAIRKNESLESLTVDNVRRDTARTRITEQKGK-------NVKLFKTSNLKNK-TKAVSASVRTSGKEPTIAK-SVKSTXXXXXXXXXXXXXXSLETAKTSAVRKKNRSVGGSSE-----GKKLKVVGFRGQASS 2317 IDYLHRTGRTARMGAKG VAKKD+ LA RIEEA++KNESLE+LT +NVRR + KG+ N K + L+ K ++ V + + + PT ++ KST+ K + + + R G G KL VVGFRG++S Sbjct: 449 IDYLHRTGRTARMGAKG-----VAKKDVTLATRIEEAMKKNESLEALTTNNVRRAAVNPQYPSTKGRPSAIKVVNQKGRRGVALQTKSSRVVKDTTSSRRRSPTKSQPRSKSTSSGKAKPVRSAKPSKSSSPSPKVAKSRPRPEGRKGNALNKLGSKLSVVGFRGRSSG 612 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0098040 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 25
Pages
BLAST of g.barbadense_cottongen_reftransV1_0098040 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0098040 ID=g.barbadense_cottongen_reftransV1_0098040; Name=g.barbadense_cottongen_reftransV1_0098040; organism=Gossypium barbadense; type=contig; length=2758bpback to top Annotated Terms
The
following terms have been associated with
this contig:
|