g.barbadense_cottongen_reftransV1_0098040, g.barbadense_cottongen_reftransV1_0098040 (contig) Gossypium barbadense

Overview
Nameg.barbadense_cottongen_reftransV1_0098040
Unique Nameg.barbadense_cottongen_reftransV1_0098040
Typecontig
OrganismGossypium barbadense (Sea Island cotton)
Sequence length2758
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Dt06chromosomeg.barbadense_cottongen_reftransV1_0098040:1..2758 .
Dt06:30849309..30856275 -
n/a
Homology
BLAST of g.barbadense_cottongen_reftransV1_0098040 vs. ExPASy Swiss-Prot
Match: DBP3_LODEL (ATP-dependent RNA helicase DBP3 OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=DBP3 PE=3 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 2.297e-24
Identity = 79/266 (29.70%), Postives = 127/266 (47.74%), Query Frame = 3
Query:  939 SFLFVTRLMLVAF*VFSVAKSISHHARFRSTMVSGGGRLRSQEDSLNNPIDMVVGTPGRVLQHIDDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLGPLKNRALKPSGQGFQTILVTATMTKAVQKLIDEEFQ-----GIEHLRTSTLHKKIASARHDFIKLLGSENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLGENQISTVNYHGEVPPEQRVENLNKFKSDDGDCPTLVCTDLAARGLDL-DVNHVVMFDFPL 1718
            S L ++    +A  ++   + ++         + GG     Q   + N  ++VV TPGR++  I+DG +    I YLVLDEAD M ++GF  DI+  +G           QG QT++ TAT  K V++L +          I      + +K+I             E KL  LLQ  + +    N+++VF      +  ++  L  N+      HG++  +QR + L  FKS  G+C  L+ TD+AARGLD+ +V +V+   FPL
Sbjct:  197 SVLCISPTRELALQIYDNLEDLTRGTDVSCVAIYGGVSKDDQIKKIRNGANVVVATPGRLVDLINDGAVDLSSINYLVLDEADRMLEKGFEEDIKLIIGST-------PAQGRQTLMFTATWPKEVRELANNFMNQPVKVTIGDRDELSANKRITQIVEVLDDKFQKEKKLINLLQKYQNTGNGDNKILVFALYKKEASRIESLLHRNKFKVAAIHGDLSQQQRTQALQSFKS--GECNLLLATDVAARGLDIPNVKYVINLTFPL 453          
BLAST of g.barbadense_cottongen_reftransV1_0098040 vs. ExPASy Swiss-Prot
Match: DDX4_HUMAN (Probable ATP-dependent RNA helicase DDX4 OS=Homo sapiens GN=DDX4 PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 2.360e-24
Identity = 79/252 (31.35%), Postives = 129/252 (51.19%), Query Frame = 3
Query:  981 VFSVAKSISHHARFRSTMVSGGGRLRSQEDSLNNPIDMVVGTPGRVLQHIDDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLGPLKNRALKPSGQGFQTILVTATMTKAVQKLIDEEFQGIEHLRTSTLH---KKIASARHDF---IKLLGSENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLGENQISTVNYHGEVPPEQRVENLNKFKSDDGDCPTLVCTDLAARGLDLD-VNHVVMFDFP 1715
            ++  A+  S     R+ ++ GG +L      +    +++  TPGR++  I    +    IKYLVLDEAD M D GFGP+++K +    +    PS +  QT++ +AT  + +Q+L        E L+++ L     ++  A  D    +  +G  +K E L+++L        R MVF  T   +  +  FL + +IST + HG+    +R + L  F+   G CP LV T +AARGLD++ V HV+ FD P
Sbjct:  381 IYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLI----SCPGMPSKEQRQTLMFSATFPEEIQRL------AAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSKREKLVEILRN--IGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRF--GKCPVLVATSVAARGLDIENVQHVINFDLP 618          
BLAST of g.barbadense_cottongen_reftransV1_0098040 vs. ExPASy Swiss-Prot
Match: DED1_PHANO (ATP-dependent RNA helicase DED1 OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) GN=DED1 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.599e-24
Identity = 82/266 (30.83%), Postives = 132/266 (49.62%), Query Frame = 3
Query:  936 TSFLFVTRLMLVAF*VFSVAKSISHHARFRSTMVSGGGRLRSQEDSLNNPIDMVVGTPGRVLQHIDDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLGPLKNRALKPSGQGFQTILVTATMTKAVQKLIDE---EFQGIEHLRTSTLHKKIASARHDFIKLLGSENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLGENQISTVNYHGEVPPEQRVENLNKFKSDDGDCPTLVCTDLAARGLDL-DVNHVVMFDFPLN 1721
            TS +      LV+  +F  A+  ++ +  R  +V GG  + SQ   +    D++V TPGR++  I+ G +    IKYLVLDEAD M D GF P IR+    ++   + P+  G QT++ +AT  + +Q L  +   E+  +   R  +  + I       I+ +   +K   LL +L    A     ++F  T   + ++  FL        + HG+    +R + L  F+S  G CP LV T +AARGLD+ +V HVV +D P +
Sbjct:  288 TSLILAPTRELVSQ-IFDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLASIKYLVLDEADRMLDMGFEPQIRRI---VEGEDMPPTA-GRQTLMFSATFPRDIQMLARDFLKEYIFLSVGRVGSTSENITQK----IEYVEDADKRSVLLDILHTHGA--GLSLIFVETKRMADSLSDFLINQGFPATSIHGDRTQREREKALEMFRS--GRCPILVATAVAARGLDIPNVTHVVNYDLPTD 540          
BLAST of g.barbadense_cottongen_reftransV1_0098040 vs. ExPASy Swiss-Prot
Match: RH52C_ORYSJ (DEAD-box ATP-dependent RNA helicase 52C OS=Oryza sativa subsp. japonica GN=Os11g0599500 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.982e-24
Identity = 76/246 (30.89%), Postives = 119/246 (48.37%), Query Frame = 3
Query:  993 AKSISHHARFRSTMVSGGGRLRSQEDSLNNPIDMVVGTPGRVLQHIDDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLGPLKNRALKPSGQGFQTILVTATMTKAVQKLIDEEFQGIEHLRTSTLHKK--IASARHDFIKLLGSENKLEALLQVLEPSLAKGNR--VMVFCNTLNSSRAVDHFLGENQISTVNYHGEVPPEQRVENLNKFKSDDGDCPTLVCTDLAARGLDLD-VNHVVMFDFP 1715
            A+  S+    R  +  GG  +  Q   L   +D++V TPGR++  ++   +    I+YL LDEAD M D GF P +R+ +  +    + P G   QT+L +AT  K +Q++  +  +    L    +     +   R +F++     + L  LL     S   G     +VF  T   + +++H+L  N     + HG+   ++R   L  FKS  G  P LV TD+AARGLD+  V HVV FD P
Sbjct:  255 ARKFSYQTGVRVVVAYGGAPINQQLRDLERGVDILVATPGRLVDLLERARVSLQSIRYLALDEADRMLDMGFEPQVRRIVEQMD---MPPPG-ARQTMLFSATFPKEIQRMASDFLENYIFLAVGRVGSSTDLIVQRVEFVQEADKRSHLMDLLHAQRDSATPGKPTLTLVFVETKRGADSLEHWLCMNGFPATSIHGDRNQQEREYALRSFKS--GHTPILVATDVAARGLDIPHVAHVVNFDLP 494          
BLAST of g.barbadense_cottongen_reftransV1_0098040 vs. ExPASy Swiss-Prot
Match: DBP2_PICST (ATP-dependent RNA helicase DBP2 OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) GN=DBP2 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.042e-24
Identity = 74/238 (31.09%), Postives = 122/238 (51.26%), Query Frame = 3
Query: 1014 ARFRSTMVSGGGRLRSQEDSLNNPIDMVVGTPGRVLQHIDDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLGPLKNRALKPSGQGFQTILVTATMTKAVQKLIDEEFQGIEHLRTSTLHKKIASARHDFIKLLGSENKLEALLQVLEPSLA-KGNRVMVFCNTLNSSRAVDHFLGENQISTVNYHGEVPPEQRVENLNKFKSDDGDCPTLVCTDLAARGLDLD-VNHVVMFDFPLN 1721
            +R R+T V GG     Q   L   +++V+ TPGR++  ++ G      + YLVLDEAD M D GF P IRK +       ++P     QT++ +AT  K VQ L  +  Q    +R  +L    +      ++++    K + L++ LE +   K ++V++F +T  +   V  +L  +    +  HG+    +R   L +FK+  G  P +V TD+AARG+D+  +N V+ FD P N
Sbjct:  197 SRIRNTCVYGGAPKGQQIRDLARGVEIVIATPGRLIDMLEMGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVD-----QIRPDR---QTLMWSATWPKEVQNLARDYLQDPIQVRIGSLELAASHTITQVVEVISEYEKRDRLVKHLETATTEKESKVLIFASTKKTCDEVTSYLRADGWPALAIHGDKQQSERDWVLREFKT--GKSPIMVATDVAARGIDVKGINFVINFDMPGN 424          

HSP 2 Score: 61.6178 bits (148), Expect = 2.383e-8
Identity = 36/93 (38.71%), Postives = 51/93 (54.84%), Query Frame = 2
Query:  491 SFEELGLSEEVMGAVREMGIEVPTEIQCIGIPFVLEEKSVVLGSHTGSGKTLAYMLPLVQLLRRDEAILGMLTKPRRPRAVVLCPTRELSEQV 769
            +F+E G  E V+  V+  G   PT IQC G P  L  + +V  + TGSGKTL+Y LP +  +        +L+    P  +VL PTREL+ Q+
Sbjct:   98 TFDEAGFPEYVLNEVKAQGFPSPTAIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPAIVHINAQP----LLSPGDGPVVLVLAPTRELAVQI 186          
BLAST of g.barbadense_cottongen_reftransV1_0098040 vs. ExPASy TrEMBL
Match: J3KX36_ORYBR (Uncharacterized protein OS=Oryza brachyantha GN=OB01G15420 PE=4 SV=1)

HSP 1 Score: 464.151 bits (1193), Expect = 1.605e-147
Identity = 213/249 (85.54%), Postives = 232/249 (93.17%), Query Frame = 3
Query:  981 VFSVAKSISHHARFRSTMVSGGGRLRSQEDSLNNPIDMVVGTPGRVLQHIDDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLGPLKNRALKPSGQGFQTILVTATMTKAVQKLIDEEFQGIEHLRTSTLHKKIASARHDFIKLLGSENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLGENQISTVNYHGEVPPEQRVENLNKFKSDDGDCPTLVCTDLAARGLDLDVNHVVMFDFPLNSV 1727
            VF VAKSISHHARFRSTMVSGG R+R QEDSLN P+DMVVGTPGR+L HI DGNMVYGDIKYLVLDEADTMFD+GFGPDIRKFL PLKNRA KP  QGFQT+LVTATMTKAVQKLIDEEF+GI HLRTST  K++A+ARHDFIKL GSENKLEALLQVLEPSLAKGN++MVFCNTLNSSRAVDHFL ENQISTVNYHGEVP E+RVENLNKF++++GDCPTLVCTDLAARGLDLDV+HV+MFDFP NS+
Sbjct:  226 VFRVAKSISHHARFRSTMVSGGSRIRPQEDSLNMPVDMVVGTPGRILDHIKDGNMVYGDIKYLVLDEADTMFDQGFGPDIRKFLAPLKNRAAKPGDQGFQTVLVTATMTKAVQKLIDEEFEGIVHLRTSTFQKRVATARHDFIKLSGSENKLEALLQVLEPSLAKGNKIMVFCNTLNSSRAVDHFLTENQISTVNYHGEVPAEERVENLNKFRNEEGDCPTLVCTDLAARGLDLDVDHVIMFDFPSNSI 474          

HSP 2 Score: 164.081 bits (414), Expect = 7.875e-39
Identity = 77/97 (79.38%), Postives = 84/97 (86.60%), Query Frame = 2
Query:  482 MADSFEELGLSEEVMGAVREMGIEVPTEIQCIGIPFVLEEKSVVLGSHTGSGKTLAYMLPLVQLLRRDEAILGMLTKPRRPRAVVLCPTRELSEQVL 772
            + DSFEELGL EEVM A+ EMGI  PTEIQC+G+P VL   SVVLGSHTGSGKTLAY+LPLVQLLRRDEA+LGM  KPRRPRAVVLCPTREL+EQV 
Sbjct:  131 VVDSFEELGLGEEVMAALGEMGISKPTEIQCVGVPSVLAGTSVVLGSHTGSGKTLAYLLPLVQLLRRDEAVLGMSMKPRRPRAVVLCPTRELTEQVF 227          

HSP 3 Score: 103.219 bits (256), Expect = 2.293e-19
Identity = 77/181 (42.54%), Postives = 94/181 (51.93%), Query Frame = 2
Query: 1853 IDYLHRTGRTARMGAKGKVTSLVAKKDLLLAERIEEAIRKNESLESLTVDNVRRDTARTRITEQKGK-------NVKLFKTSNLKNKTKAVSASVRTSGKEPTIAKSVKSTXXXXXXXXXXXXXXSLETAKTSAVRKKNRSVGGSSE-------------------GKKLKVVGFRGQASS 2317
            IDYLHRTGRTARMGAKGKVTSLVAKKD+ LA RIEEAI+KNESLE+LT +NVRR          KG+       N K  +   L  K+  V     +S +   + K   +T+  +   K    SKS  + K   VR    S  GS +                   G KL VVGFRG++S 
Sbjct:  474 IDYLHRTGRTARMGAKGKVTSLVAKKDVALATRIEEAIKKNESLEALTTNNVRRAATSPHHASTKGRPSGLKVVNQKGRRGVALSTKSSRVVKDTTSSRRSSRVVKD--TTSRRRSPAKNQPKSKSTSSGKAKPVRSAKPSKSGSPKVAKSRPRPEGRKGDALNKLGTKLSVVGFRGRSSG 652          
BLAST of g.barbadense_cottongen_reftransV1_0098040 vs. ExPASy TrEMBL
Match: K3XHI7_SETIT (Uncharacterized protein OS=Setaria italica GN=Si000707m.g PE=4 SV=1)

HSP 1 Score: 456.062 bits (1172), Expect = 3.280e-147
Identity = 213/249 (85.54%), Postives = 232/249 (93.17%), Query Frame = 3
Query:  981 VFSVAKSISHHARFRSTMVSGGGRLRSQEDSLNNPIDMVVGTPGRVLQHIDDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLGPLKNRALKPSGQGFQTILVTATMTKAVQKLIDEEFQGIEHLRTSTLHKKIASARHDFIKLLGSENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLGENQISTVNYHGEVPPEQRVENLNKFKSDDGDCPTLVCTDLAARGLDLDVNHVVMFDFPLNSV 1727
            V+ VAKSISHHARFRSTMVSGG RLR QEDSLN P+DMVVGTPGR+L HI DGNMVYGDIKYLVLDEADTMFD+GFGPDIRKFL PLKNRA KP  QGFQT+LVTATMTKAVQKLIDEEF+GI HLRTST  K++A+ARHDFIKL GSENKLEALLQVLEPSLAKGN++MVFCNTLNSSRAVDHFL ENQISTVNYHGEVP E+RVENLNKF++++GDCPTLVCTDLAARGLDLDV+HV+MFDFP NS+
Sbjct:  192 VYRVAKSISHHARFRSTMVSGGTRLRPQEDSLNMPVDMVVGTPGRILDHIKDGNMVYGDIKYLVLDEADTMFDQGFGPDIRKFLAPLKNRATKPGDQGFQTVLVTATMTKAVQKLIDEEFEGIVHLRTSTFQKRVATARHDFIKLTGSENKLEALLQVLEPSLAKGNKIMVFCNTLNSSRAVDHFLTENQISTVNYHGEVPAEERVENLNKFRNEEGDCPTLVCTDLAARGLDLDVDHVIMFDFPSNSI 440          

HSP 2 Score: 162.925 bits (411), Expect = 2.802e-39
Identity = 84/127 (66.14%), Postives = 100/127 (78.74%), Query Frame = 2
Query:  389 SSPSMPPQNLPVLGQETEAYDXXXXXXXXXIMADSFEELGLSEEVMGAVREMGIEVPTEIQCIGIPFVLEEKSVVLGSHTGSGKTLAYMLPLVQLLRRDEAILGMLTKPRRPRAVVLCPTRELSEQV 769
             SP++PP+     G E  +    +G++ +   A+SFEELGL EEVM A+ EMGI  PTEIQC+G+P VL+  SVVLGSHTGSGKTLAY+LPLVQLLRRDEA+LGM  KPRRPRAVVLCPTREL+EQV
Sbjct:   68 GSPNLPPRGKAARGGERTSQHPQQGRRVEA--AESFEELGLGEEVMAALGEMGISKPTEIQCVGVPAVLDGTSVVLGSHTGSGKTLAYLLPLVQLLRRDEAMLGMSMKPRRPRAVVLCPTRELTEQV 192          
BLAST of g.barbadense_cottongen_reftransV1_0098040 vs. ExPASy TrEMBL
Match: A0A072UJK7_MEDTR (DEAD-box ATP-dependent RNA helicase OS=Medicago truncatula GN=MTR_6g039840 PE=4 SV=1)

HSP 1 Score: 457.603 bits (1176), Expect = 3.690e-147
Identity = 211/249 (84.74%), Postives = 234/249 (93.98%), Query Frame = 3
Query:  981 VFSVAKSISHHARFRSTMVSGGGRLRSQEDSLNNPIDMVVGTPGRVLQHIDDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLGPLKNRALKPSGQGFQTILVTATMTKAVQKLIDEEFQGIEHLRTSTLHKKIASARHDFIKLLGSENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLGENQISTVNYHGEVPPEQRVENLNKFKSDDGDCPTLVCTDLAARGLDLDVNHVVMFDFPLNSV 1727
            VF VAK+ISHHARFR TMVSGGGRLR QE+SL+NPIDMVVGTPGR+LQHI++GNMVYGDI+Y+VLDEADTMFDRGFGPDI+KFL PLK+RA KP   GFQT+LVTATMTKAVQ L+DEEFQGI HLRTS+LHKKI++ARHDFIKL G+ENKL++LLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFL ENQISTVNYHGEVP  QRVENLNKFKS++ DCPTLVCTDLAARGLDLDV+HV+MFDFPLNS+
Sbjct:   26 VFRVAKAISHHARFRCTMVSGGGRLRPQEESLSNPIDMVVGTPGRILQHIEEGNMVYGDIQYVVLDEADTMFDRGFGPDIKKFLAPLKHRASKPDSLGFQTVLVTATMTKAVQNLVDEEFQGIVHLRTSSLHKKISNARHDFIKLSGTENKLDSLLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLEENQISTVNYHGEVPAAQRVENLNKFKSNNDDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSI 274          

HSP 2 Score: 102.064 bits (253), Expect = 2.909e-19
Identity = 50/79 (63.29%), Postives = 64/79 (81.01%), Query Frame = 2
Query: 1853 IDYLHRTGRTARMGAKGKVTSLVAKKDLLLAERIEEAIRKNESLESLTVDNVRRDTARTRITEQKGKNVKLFKTSNLKN 2089
            IDYLHRTGRTARMGAKGK+TSLV KKD  LA +IEEAI+KNE+LE++T ++VR D  R +ITEQ+ KN  + K S +++
Sbjct:  274 IDYLHRTGRTARMGAKGKITSLVTKKDYSLATKIEEAIKKNENLEAITKESVRMDVTRNQITEQRRKNKNVVKPSKVRD 352          
BLAST of g.barbadense_cottongen_reftransV1_0098040 vs. ExPASy TrEMBL
Match: A0A022R984_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a002525mg PE=4 SV=1)

HSP 1 Score: 462.996 bits (1190), Expect = 4.323e-147
Identity = 218/249 (87.55%), Postives = 233/249 (93.57%), Query Frame = 3
Query:  981 VFSVAKSISHHARFRSTMVSGGGRLRSQEDSLNNPIDMVVGTPGRVLQHIDDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLGPLKNRALKPSGQGFQTILVTATMTKAVQKLIDEEFQGIEHLRTSTLHKKIASARHDFIKLLGSENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLGENQISTVNYHGEVPPEQRVENLNKFKSDDGDCPTLVCTDLAARGLDLDVNHVVMFDFPLNSV 1727
            VF VAKSISHHARFRSTMVSGGGR+R QEDSLN+PIDMVVGTPGRVLQHI++GNMVYGDI+YLVLDEADTMFDRGFGPDI KFL PLKNRA KP G  FQT+LVTATMTK VQKL+D+EFQGI HLRTS+LHKKIA+ARHDFIKL GSENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFL ENQI TVNYHGEVP EQRVENL KFKS++GDCPTLVCTDLAARGLDLDV+HV+MFDFP NS+
Sbjct:  220 VFHVAKSISHHARFRSTMVSGGGRIRPQEDSLNSPIDMVVGTPGRVLQHIEEGNMVYGDIRYLVLDEADTMFDRGFGPDIHKFLAPLKNRASKPDGLEFQTVLVTATMTKPVQKLVDDEFQGIIHLRTSSLHKKIANARHDFIKLSGSENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLSENQILTVNYHGEVPAEQRVENLEKFKSNEGDCPTLVCTDLAARGLDLDVDHVIMFDFPSNSI 468          

HSP 2 Score: 205.297 bits (521), Expect = 1.275e-52
Identity = 123/222 (55.41%), Postives = 144/222 (64.86%), Query Frame = 2
Query:  161 MAATSRTLLFVSLLSSPKHFSYYP----------FLKPSRV-FRGFKPFCSAP-SPILTTIDPDD----LKHSMLLERLRTRHLKHSAKLPSSSPSMPPQNLP--VLGQETEAYDXXXXXXXXXIMADSFEELGLSEEVMGAVREMGIEVPTEIQCIGIPFVLEEKSVVLGSHTGSGKTLAYMLPLVQLLRRDEAILGMLTKPRRPRAVVLCPTRELSEQVL 772
            M  T++ L F SLLS PK FS+            +  P RV F  F+P C+A  +  +  ID  +    +KHS+LLERLR RHLK SA+  S S +  P +L     G+  E     + K        SFEELGLSEEV+GA+ EMGI VPTEIQCIG+P VL  KSVVLGSHTGSGKTLAY+LPLVQLLRRDE + GML KPRRPRAVVLCPTREL EQV 
Sbjct:    1 MGTTAKVLSF-SLLSLPKRFSFNRPIYLSIPLNVYTTPYRVDFHRFRPLCTAAATATIPEIDETETLQPIKHSILLERLRQRHLKDSAQTFSKSVAANPSSLSGSKKGKNGEIEGSRRNKGGAADADSSFEELGLSEEVIGALVEMGISVPTEIQCIGMPAVLNGKSVVLGSHTGSGKTLAYLLPLVQLLRRDEELHGMLMKPRRPRAVVLCPTRELCEQVF 221          

HSP 3 Score: 117.472 bits (293), Expect = 9.216e-24
Identity = 60/95 (63.16%), Postives = 74/95 (77.89%), Query Frame = 2
Query: 1853 IDYLHRTGRTARMGAKGKVTSLVAKKDLLLAERIEEAIRKNESLESLTVDNVRRDTARTRITEQKGKNVKLFKTSNLKNKTKAVSASVRTSGKEP 2137
            IDYLHRTGRTARMGAKGKVTSLVA+K+  LA  IEEA+ KNESLES++VD+++RD AR+ I+EQK KN ++ K SN +NK    SA+   S  EP
Sbjct:  468 IDYLHRTGRTARMGAKGKVTSLVARKNTNLAALIEEALMKNESLESISVDSIKRDLARSHISEQKDKNERMVKGSNSRNKPATNSAAPTKSSYEP 562          
BLAST of g.barbadense_cottongen_reftransV1_0098040 vs. ExPASy TrEMBL
Match: B8ADM4_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_00680 PE=4 SV=1)

HSP 1 Score: 461.455 bits (1186), Expect = 4.875e-147
Identity = 213/249 (85.54%), Postives = 232/249 (93.17%), Query Frame = 3
Query:  981 VFSVAKSISHHARFRSTMVSGGGRLRSQEDSLNNPIDMVVGTPGRVLQHIDDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLGPLKNRALKPSGQGFQTILVTATMTKAVQKLIDEEFQGIEHLRTSTLHKKIASARHDFIKLLGSENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLGENQISTVNYHGEVPPEQRVENLNKFKSDDGDCPTLVCTDLAARGLDLDVNHVVMFDFPLNSV 1727
            VF VAKSISHHARFRSTMVSGG R+R QEDSLN P+DMVVGTPGR+L HI DGNMVYGDIKYLVLDEADTMFD+GFGPDIRKFL PLKNRA KP  QGFQT+LVTATMTKAVQKLIDEEF+GI HLRT+T  K++A+ARHDFIKL GSENKLEALLQVLEPSLAKGN+VMVFCNTLNSSRAVDHFL ENQISTVNYHGEVP E+RVENLNKF++++GDCPTLVCTDLAARGLDLDV+HV+MFDFP NS+
Sbjct:  201 VFRVAKSISHHARFRSTMVSGGSRIRPQEDSLNMPVDMVVGTPGRILDHIKDGNMVYGDIKYLVLDEADTMFDQGFGPDIRKFLAPLKNRAAKPGDQGFQTVLVTATMTKAVQKLIDEEFEGIVHLRTTTFQKRVATARHDFIKLSGSENKLEALLQVLEPSLAKGNKVMVFCNTLNSSRAVDHFLTENQISTVNYHGEVPAEERVENLNKFRNEEGDCPTLVCTDLAARGLDLDVDHVIMFDFPSNSI 449          

HSP 2 Score: 171.4 bits (433), Expect = 1.937e-41
Identity = 94/162 (58.02%), Postives = 115/162 (70.99%), Query Frame = 2
Query:  323 KHSMLLERLRTRHLKHSAKLPSSSPSMPPQNLPVLGQETEAYDXXXXXXXXXIMADSFEELGLSEEVMGAVREMGIEVPTEIQCIGIPFVLEEKSVVLGSHTGSGKTLAYMLPLVQLLRRDEAILGMLTKPRRPRAVVLCPTRELSEQVLVTHPAMIWTSEF 808
            +H +LLERLR RHLK    +P+++P  P Q     G       +   +K++  + +SFEELGL EEVM A+ EMGI  PTEIQC+G+P VL   SVVLGSHTGSGKTLAY+LPLVQLLRRDEA+LGM  KPRRPRAVVLCPTREL+EQV     ++   + F
Sbjct:   60 RHELLLERLRQRHLKG---VPAATPR-PAQREKGRGG---GGAQELQQKRRVEVVESFEELGLGEEVMAALGEMGISKPTEIQCVGVPAVLAGTSVVLGSHTGSGKTLAYLLPLVQLLRRDEAMLGMSMKPRRPRAVVLCPTRELTEQVFRVAKSISHHARF 214          

HSP 3 Score: 87.8113 bits (216), Expect = 1.654e-14
Identity = 66/169 (39.05%), Postives = 88/169 (52.07%), Query Frame = 2
Query: 1853 IDYLHRTGRTARMGAKGKVTSLVAKKDLLLAERIEEAIRKNESLESLTVDNVRRDTARTRITEQKGK-------NVKLFKTSNLKNK-TKAVSASVRTSGKEPTIAK-SVKSTXXXXXXXXXXXXXXSLETAKTSAVRKKNRSVGGSSE-----GKKLKVVGFRGQASS 2317
            IDYLHRTGRTARMGAKG     VAKKD+ LA RIEEA++KNESLE+LT +NVRR     +    KG+       N K  +   L+ K ++ V  +  +  + PT ++   KST+  K             +      + + R  G         G KL VVGFRG++S 
Sbjct:  449 IDYLHRTGRTARMGAKG-----VAKKDVTLATRIEEAMKKNESLEALTTNNVRRAAVNPQYPSTKGRPSAIKVVNQKGRRGVALQTKSSRVVKDTTSSRRRSPTKSQPRSKSTSSGKAKPVRSAKPSKSSSPSPKVAKSRPRPEGRKGNALNKLGSKLSVVGFRGRSSG 612          
The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0098040 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 25
Match NameE-valueIdentityDescription
DBP3_LODEL2.297e-2429.70ATP-dependent RNA helicase DBP3 OS=Lodderomyces el... [more]
DDX4_HUMAN2.360e-2431.35Probable ATP-dependent RNA helicase DDX4 OS=Homo s... [more]
DED1_PHANO2.599e-2430.83ATP-dependent RNA helicase DED1 OS=Phaeosphaeria n... [more]
RH52C_ORYSJ2.982e-2430.89DEAD-box ATP-dependent RNA helicase 52C OS=Oryza s... [more]
DBP2_PICST3.042e-2431.09ATP-dependent RNA helicase DBP2 OS=Scheffersomyces... [more]

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BLAST of g.barbadense_cottongen_reftransV1_0098040 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
J3KX36_ORYBR1.605e-14785.54Uncharacterized protein OS=Oryza brachyantha GN=OB... [more]
K3XHI7_SETIT3.280e-14785.54Uncharacterized protein OS=Setaria italica GN=Si00... [more]
A0A072UJK7_MEDTR3.690e-14784.74DEAD-box ATP-dependent RNA helicase OS=Medicago tr... [more]
A0A022R984_ERYGU4.323e-14787.55Uncharacterized protein OS=Erythranthe guttata GN=... [more]
B8ADM4_ORYSI4.875e-14785.54Putative uncharacterized protein OS=Oryza sativa s... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001650Helicase, C-terminalSMARTSM00490helicmild6coord: 163..230
e-value: 5.6E-8
score: 42.5
IPR001650Helicase, C-terminalPFAMPF00271Helicase_Ccoord: 134..231
e-value: 1.8E-18
score: 66.8
IPR001650Helicase, C-terminalPROSITEPS51194HELICASE_CTERcoord: 134..243
score: 11.868
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 131..235
e-value: 1.7E-25
score: 88.7
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 2..114
e-value: 5.8E-26
score: 90.3
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 3..233
IPR011545DEAD/DEAH box helicase domainPFAMPF00270DEADcoord: 3..98
e-value: 1.5E-18
score: 67.1
NoneNo IPR availablePANTHERPTHR24031:SF247DEAD-BOX ATP-DEPENDENT RNA HELICASE 39coord: 1..232
NoneNo IPR availablePANTHERPTHR24031RNA HELICASEcoord: 1..232
IPR014001Helicase superfamily 1/2, ATP-binding domainPROSITEPS51192HELICASE_ATP_BIND_1coord: 1..109
score: 16.495

Sequences
The following sequences are available for this feature:

contig sequence

>g.barbadense_cottongen_reftransV1_0098040 ID=g.barbadense_cottongen_reftransV1_0098040; Name=g.barbadense_cottongen_reftransV1_0098040; organism=Gossypium barbadense; type=contig; length=2758bp
CTACTCCCAAAGTCCCAAGAGAAAATGGATGATATTGGGACCTTACCTCC
CTAGTGCCTTGAAAGCTTCGCTAATGCTGCAAACAAATACAAAGTAGCAG
CAGGGAAAACAAAACCAAAAACTATATCTGGCCTCACAGAACATGATGCA
GAAAGCTATGATGGCTGCTACTTCAAGAACTCTCCTTTTTGTCTCTCTTC
TTTCCTCTCCCAAACATTTCTCTTACTACCCTTTTCTCAAACCCTCTAGG
GTTTTTCGAGGGTTTAAGCCTTTCTGCTCTGCCCCATCCCCAATCCTCAC
CACCATTGATCCTGACGACTTGAAACACTCCATGCTACTTGAAAGGCTTA
GAACCAGACATCTCAAACATTCTGCGAAACTCCCATCCTCATCACCCTCT
ATGCCTCCACAAAACCTGCCTGTTTTGGGTCAAGAGACCGAGGCTTATGA
TAAGGGGAAAGGGAAAAAGAAGAAGAAAATTATGGCCGATAGTTTTGAGG
AGTTGGGTTTGAGTGAAGAAGTGATGGGTGCTGTTAGAGAGATGGGGATT
GAAGTTCCTACTGAGATTCAGTGTATCGGGATTCCTTTTGTATTGGAAGA
GAAAAGTGTGGTTTTGGGTTCTCATACTGGCTCTGGCAAGACTCTTGCAT
ACATGTTGCCACTTGTTCAGTTGCTGAGGCGGGATGAGGCAATATTAGGC
ATGCTAACAAAGCCCAGGCGTCCACGAGCCGTTGTTCTATGCCCCACAAG
AGAGCTGTCTGAGCAGGTTTTGGTTACTCACCCTGCTATGATTTGGACCT
CCGAATTTGTTCTATATTTATAGACTTTGACTTTTATCACTTGGGAGCAT
CCAAGATGAAAGTCTCTTGCACAGTTTTGAGTGAGAGAAAGAATAGAGGA
ATCCTCTTTTCGACTCTTACTCTCCCACTCTGCTCACTTCTTTTCTTTTT
GTTACTAGATTAATGTTAGTGGCTTTTTAGGTTTTTAGTGTGGCAAAGTC
TATTAGCCATCATGCAAGATTTAGGTCTACTATGGTCAGTGGGGGAGGCC
GGTTAAGATCACAAGAGGACTCTTTGAATAACCCAATTGACATGGTAGTT
GGGACCCCTGGTAGGGTCCTTCAACATATTGATGACGGGAACATGGTTTA
TGGTGACATCAAATACTTGGTTTTGGATGAGGCTGACACTATGTTTGACC
GTGGCTTTGGTCCTGACATTCGCAAGTTTCTTGGTCCATTAAAAAATCGT
GCTCTAAAACCCAGTGGCCAAGGATTTCAAACTATTTTAGTGACAGCTAC
AATGACAAAGGCTGTGCAGAAACTGATTGATGAGGAATTTCAAGGAATAG
AACATCTACGAACATCAACACTGCACAAGAAAATAGCATCTGCTCGTCAT
GATTTCATCAAACTTTTGGGTTCTGAAAACAAGCTGGAAGCATTACTGCA
GGTTCTTGAGCCAAGTTTAGCTAAGGGGAACAGAGTAATGGTGTTTTGTA
ATACATTAAATTCTAGCCGTGCTGTTGATCATTTTCTTGGTGAAAATCAG
ATCTCTACTGTAAATTACCATGGCGAGGTGCCTCCAGAACAAAGGGTTGA
AAACCTGAACAAGTTCAAGAGTGATGATGGAGACTGTCCCACATTGGTTT
GCACGGACTTGGCTGCTAGAGGGCTGGACTTGGATGTTAATCATGTTGTC
ATGTTTGATTTCCCTTTAAACTCTGTAAGCAACATTTCTTTGATCAACTT
GTTTGGGTCTTAGCTTGCCCTTCTCTCAAACCTGAACTCCTTTGCTTTTG
TGCCCCCTTTCTTTATGGTTCTATTTTTTCTCACTTCTGTTTGGCCTTTT
AGATCGACTACCTTCATCGCACTGGAAGAACTGCACGAATGGGTGCCAAA
GGGAAAGTAACAAGTTTGGTGGCTAAAAAGGACTTATTGTTGGCAGAAAG
GATAGAGGAGGCAATAAGAAAGAATGAGAGTTTGGAATCTCTTACAGTTG
ATAATGTCCGAAGGGATACTGCAAGGACTCGGATTACCGAGCAGAAGGGG
AAGAATGTTAAACTGTTTAAGACGTCGAATCTGAAAAACAAGACCAAAGC
TGTGTCTGCATCTGTGCGGACATCAGGGAAAGAACCCACAATTGCAAAGT
CGGTAAAATCTACTGCTCCAGCCAAACCTTCAAAGAAAATAGTTAAGGTC
TCAAAAAGTTTGGAGACTGCAAAAACATCTGCCGTACGAAAGAAAAACAG
GTCAGTTGGTGGGAGTTCTGAAGGCAAAAAACTGAAGGTTGTTGGATTTA
GGGGACAAGCTTCCTCGAGCAAGAGAGAATCGTTTACACCAAGTTGATTG
TGGTCAAAGTTTGGAATTCTGCAAATGGCTTTTAACATGTTATCAATCAA
TAGTTGAAAAAAAAAATCATGTTAAATTCATATCTCTCTTATCTTAGCAC
TTAGAATTGATTGCAACACATCTATATTTGTTTTTCCACTTTGCACCCTT
AAAGGTTAGCTGAGGATGTCTTAGTGGGAGTTTATATTAGCCTGTTGTGC
AGAAAATTCATACATGGATTGGGGATAGAGATTTAAGGGTTCCCCCCCCC
CCCTCCTGTATGGATGGGTATTGATTTTGTTCCATTACGACTGTTAATGC
AACGCATAGAATTCAGTAGTGCTTAGGGTTATAAATATACCAGGAGGAGG
TTTGTTTTTACAGGATATTCTGATATTTTGAACATTTTCTATCAATTATG
TTGACAGG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR001650Helicase_C-like
IPR027417P-loop_NTPase
IPR011545DEAD/DEAH_box_helicase_dom
IPR014001Helicase_ATP-bd
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
GO:0003676nucleic acid binding