g.barbadense_cottongen_reftransV1_0098040, g.barbadense_cottongen_reftransV1_0098040 (contig) Gossypium barbadense

Overview


Name	g.barbadense_cottongen_reftransV1_0098040
Unique Name	g.barbadense_cottongen_reftransV1_0098040
Type	contig
Organism	Gossypium barbadense (Sea Island cotton)
Sequence length	2758

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Dt06	chromosome	g.barbadense_cottongen_reftransV1_0098040:1..2758 . Dt06:30849309..30856275 -

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium barbadense CottonGen RefTrans V1	2016-11-01
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot	2016-11-01
InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1	2016-11-02
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL	2016-11-02

Homology

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BLAST of g.barbadense_cottongen_reftransV1_0098040 vs. ExPASy Swiss-Prot
Match: RH39_ORYSJ (DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa subsp. japonica GN=Os01g0184500 PE=2 SV=1)

HSP 1 Score: 461.455 bits (1186), Expect = 6.234e-149
Identity = 213/249 (85.54%), Postives = 232/249 (93.17%), Query Frame = 3

Query:  981 VFSVAKSISHHARFRSTMVSGGGRLRSQEDSLNNPIDMVVGTPGRVLQHIDDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLGPLKNRALKPSGQGFQTILVTATMTKAVQKLIDEEFQGIEHLRTSTLHKKIASARHDFIKLLGSENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLGENQISTVNYHGEVPPEQRVENLNKFKSDDGDCPTLVCTDLAARGLDLDVNHVVMFDFPLNSV 1727
            VF VAKSISHHARFRSTMVSGG R+R QEDSLN P+DMVVGTPGR+L HI DGNMVYGDIKYLVLDEADTMFD+GFGPDIRKFL PLKNRA KP  QGFQT+LVTATMTKAVQKLIDEEF+GI HLRT+T  K++A+ARHDFIKL GSENKLEALLQVLEPSLAKGN+VMVFCNTLNSSRAVDHFL ENQISTVNYHGEVP E+RVENLNKF++++GDCPTLVCTDLAARGLDLDV+HV+MFDFP NS+
Sbjct:  203 VFRVAKSISHHARFRSTMVSGGSRIRPQEDSLNMPVDMVVGTPGRILDHIKDGNMVYGDIKYLVLDEADTMFDQGFGPDIRKFLAPLKNRAAKPGDQGFQTVLVTATMTKAVQKLIDEEFEGIVHLRTTTFQKRVATARHDFIKLSGSENKLEALLQVLEPSLAKGNKVMVFCNTLNSSRAVDHFLTENQISTVNYHGEVPAEERVENLNKFRNEEGDCPTLVCTDLAARGLDLDVDHVIMFDFPSNSI 451

HSP 2 Score: 174.096 bits (440), Expect = 3.384e-44
Identity = 93/162 (57.41%), Postives = 115/162 (70.99%), Query Frame = 2

Query:  323 KHSMLLERLRTRHLKHSAKLPSSSPSMPPQNLPVLGQETEAYDXXXXXXXXXIMADSFEELGLSEEVMGAVREMGIEVPTEIQCIGIPFVLEEKSVVLGSHTGSGKTLAYMLPLVQLLRRDEAILGMLTKPRRPRAVVLCPTRELSEQVLVTHPAMIWTSEF 808
            +H +LLERLR RHLK    +P+++P    +     G    A +  + ++ + +  DSFEELGL EEVM A+ EMGI  PTEIQC+G+P VL   SVVLGSHTGSGKTLAY+LPLVQLLRRDEA+LGM  KPRRPRAVVLCPTREL+EQV     ++   + F
Sbjct:   60 RHELLLERLRQRHLKG---VPAATPRPAQREKGRGGGGGGAQELQQKRRVEVV--DSFEELGLGEEVMAALGEMGISKPTEIQCVGVPAVLAGTSVVLGSHTGSGKTLAYLLPLVQLLRRDEAMLGMSMKPRRPRAVVLCPTRELTEQVFRVAKSISHHARF 216

HSP 3 Score: 102.064 bits (253), Expect = 5.851e-21
Identity = 73/171 (42.69%), Postives = 95/171 (55.56%), Query Frame = 2

Query: 1853 IDYLHRTGRTARMGAKGKVTSLVAKKDLLLAERIEEAIRKNESLESLTVDNVRRDTARTRITEQKGKNVKLFKTSNLKNKTKAVSASVRTSG--KEPTIAKSV---------KSTXXXXXXXXXXXXXXSLETAKTSAVRKKNRSVGGSSE-----GKKLKVVGFRGQASS 2317
            IDYLHRTGRTARMGAKGKVTSLVAKKD+ LA RIEEA++KNESLE+LT +NVRR     + T  KG+   L K  N K + + V+   ++S   K+ T ++           KST+  K             +      + + R  G   +     G KL VVGFRG++S 
Sbjct:  451 IDYLHRTGRTARMGAKGKVTSLVAKKDVTLATRIEEAMKKNESLEALTTNNVRRAAVNPQYTSTKGRPSAL-KVVNQKGR-RGVALQTKSSRIVKDTTSSRRRSPIRSQPRSKSTSSGKAKPVRSAKPSKSSSPSPKVAKSRPRPEGRKGDALNKLGSKLSVVGFRGRSSG 619

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0098040 vs. ExPASy Swiss-Prot
Match: RH39_ARATH (DEAD-box ATP-dependent RNA helicase 39 OS=Arabidopsis thaliana GN=RH39 PE=2 SV=2)

HSP 1 Score: 453.366 bits (1165), Expect = 6.444e-146
Identity = 211/249 (84.74%), Postives = 230/249 (92.37%), Query Frame = 3

Query:  981 VFSVAKSISHHARFRSTMVSGGGRLRSQEDSLNNPIDMVVGTPGRVLQHIDDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLGPLKNRALKPSGQGFQTILVTATMTKAVQKLIDEEFQGIEHLRTSTLHKKIASARHDFIKLLGSENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLGENQISTVNYHGEVPPEQRVENLNKFKSDDGDCPTLVCTDLAARGLDLDVNHVVMFDFPLNSV 1727
            V+ VAKSISHHARFRS +VSGG R+R QEDSLNN IDMVVGTPGR+LQHI++GNMVYGDI YLVLDEADTMFDRGFGP+IRKFL PL  RALK + QGFQT+LVTATMT AVQKL+DEEFQGIEHLRTSTLHKKIA+ARHDFIKL G E+KLEALLQVLEPSLAKG++VMVFCNTLNSSRAVDH+L ENQISTVNYHGEVP EQRVENL KFK ++GDCPTLVCTDLAARGLDLDV+HVVMFDFP NS+
Sbjct:  205 VYRVAKSISHHARFRSILVSGGSRIRPQEDSLNNAIDMVVGTPGRILQHIEEGNMVYGDIAYLVLDEADTMFDRGFGPEIRKFLAPLNQRALKTNDQGFQTVLVTATMTMAVQKLVDEEFQGIEHLRTSTLHKKIANARHDFIKLSGGEDKLEALLQVLEPSLAKGSKVMVFCNTLNSSRAVDHYLSENQISTVNYHGEVPAEQRVENLKKFKDEEGDCPTLVCTDLAARGLDLDVDHVVMFDFPKNSI 453

HSP 2 Score: 185.267 bits (469), Expect = 6.368e-48
Identity = 127/216 (58.80%), Postives = 148/216 (68.52%), Query Frame = 2

Query:  161 MAATSRTLLFVSLLSSPKHFS----YYPFL---KPSRVFRGFKPFCSA------PSPILTTIDPDDLKHSMLLERLRTRHLKHSAKLPSSSPSMPPQNLPVLGQETEAYDXXXXXXXXXIMADSFEELGLSEEVMGAVREMGIEVPTEIQCIGIPFVLEEKSVVLGSHTGSGKTLAYMLPLVQLLRRDEAILGMLTKPRRPRAVVLCPTRELSEQV 769
            M   SRT+L +SL SS   FS     +PFL   KP R    F+P  SA      P+      DPD LKH++LLERLR RHLK SAK P   PS       V+G E E+      +KK K + ++F+ELGLSEEVMGA++E+ IEVPTEIQCIGIP V+E KSVVLGSHTGSGKTLAY+LP+VQL+R DEA LG  TKPRRPR VVLCPTRELSEQV
Sbjct:    1 MVGASRTILSLSLSSSLFTFSKIPHVFPFLRLHKP-RFHHAFRPLYSAAATTSSPTTETNVTDPDQLKHTILLERLRLRHLKESAKPPQQRPS------SVVGVEEES----SIRKKSKKLVENFQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLPIVQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQV 205

HSP 3 Score: 135.961 bits (341), Expect = 8.230e-32
Identity = 80/167 (47.90%), Postives = 108/167 (64.67%), Query Frame = 2

Query: 1853 IDYLHRTGRTARMGAKGKVTSLVAKKDLLLAERIEEAIRKNESLESLTVDNVRRDTARTRITEQKGKNVK----LFKTSNLKNKTKAVSASVRTSGKEPTIAKSVKSTXXXXXXXXXXXXXXS------LETAKTSAVRKKNRSVGGSSEGKKLKVVGFRGQASSSK 2323
            IDYLHRTGRTARMGAKGKVTSLV++KD +LA RIEEA+R NESLESLT DNVRRD ART IT++KG++VK    + K  N ++K  + S   R++G +  + KS  S+              S      L+T  + ++  + ++      GKKL VVGFRG++SS++
Sbjct:  453 IDYLHRTGRTARMGAKGKVTSLVSRKDQMLAARIEEAMRNNESLESLTTDNVRRDAARTHITQEKGRSVKQIREVSKQRNSRDKPSSSSPPARSTGGKTPVRKSSSSSFSKPRKASSPPEKSSKPKRKILKTVGSRSIAARGKTGSDRRPGKKLSVVGFRGKSSSAR 619

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0098040 vs. ExPASy Swiss-Prot
Match: DBP2_GIBZE (ATP-dependent RNA helicase DBP2 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=DBP2 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.121e-26
Identity = 71/252 (28.17%), Postives = 129/252 (51.19%), Query Frame = 3

Query:  996 KSISHHARFRSTMVSGGGRLRSQEDSLNNPIDMVVGTPGRVLQHIDDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLGPLKNRALKPSGQGFQTILVTATMTKAVQKLIDEEFQGIEHLRTSTLHKKIASARHDFIKLLGSENKLEALLQVLEPSLA-KGNRVMVFCNTLNSSRAVDHFLGENQISTVNYHGEVPPEQRVENLNKFKSDDGDCPTLVCTDLAARGLDL-DVNHVVMFDFPLNSVSNISLI 1745
            K     +R R+T V GG     Q   L+  +++ + TPGR++  ++ G      + YLVLDEAD M D GF P IRK +G      ++P     QT++ +AT  K V+ L  +  Q    +   ++           ++++    K + +++ +E  +  K N++++F  T   +  +  FL ++    ++ HG+    +R   L++FK+  G  P +V TD+A+RG+D+ ++ HV+ +D+P NS   I  I
Sbjct:  228 KKFGRSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIG-----QIRPDR---QTLMWSATWPKEVRALASDFLQDFIQVNIGSMELAANHRITQIVEVVTEMEKRDRMIKHMEKVMENKENKILIFVGTKRVADEITRFLRQDGWPALSIHGDKQQNERDWVLDQFKT--GKSPIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRI 469

HSP 2 Score: 31.5722 bits (70), Expect = 1.121e-26
Identity = 12/21 (57.14%), Postives = 14/21 (66.67%), Query Frame = 2

Query: 1856 DYLHRTGRTARMGAKGKVTSL 1918
            DY+HR GRT R GA G   +L
Sbjct:  464 DYIHRIGRTGRAGAMGTAITL 484

HSP 3 Score: 57.3806 bits (137), Expect = 4.584e-7
Identity = 36/94 (38.30%), Postives = 48/94 (51.06%), Query Frame = 2

Query:  488 DSFEELGLSEEVMGAVREMGIEVPTEIQCIGIPFVLEEKSVVLGSHTGSGKTLAYMLPLVQLLRRDEAILGMLTKPRRPRAVVLCPTRELSEQV 769
            ++F+E G    VM  V+  G   PT IQ  G P  L  + VV  + TGSGKTL Y LP +  +        +L     P  +VL PTREL+ Q+
Sbjct:  134 ETFDEAGFPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPSIVHINAQP----LLAPGDGPIVLVLAPTRELAVQI 223

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0098040 vs. ExPASy Swiss-Prot
Match: DBP2_SCLS1 (ATP-dependent RNA helicase dbp2 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=dbp2 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.248e-26
Identity = 74/246 (30.08%), Postives = 123/246 (50.00%), Query Frame = 3

Query: 1014 ARFRSTMVSGGGRLRSQEDSLNNPIDMVVGTPGRVLQHIDDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLGPLKNRALKPSGQGFQTILVTATMTKAVQKLIDEEFQGIEHLRTSTLHKKIASARHDFIKLLGSENKLEALLQVLEPSLA-KGNRVMVFCNTLNSSRAVDHFLGENQISTVNYHGEVPPEQRVENLNKFKSDDGDCPTLVCTDLAARGLDL-DVNHVVMFDFPLNSVSNISLI 1745
            +R R+T V GG     Q   L   +++ + TPGR++  I+ G      + YLVLDEAD M D GF P IRK LG      ++P     QT + +AT  K V+ L  +       +   +L           ++++    K + + + LE  +  K N++++F  T   +  +  FL ++    ++ HG+    +R   LN+FK+  G  P +V TD+A+RG+D+ ++ HV  +D+P NS   I  I
Sbjct:  249 SRIRNTCVYGGVPKGGQIRDLAKGVEVCIATPGRLIDMIESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKILG-----QIRPDR---QTCMWSATWPKEVRALASDYLNDFIQVNIGSLELSANHRITQIVEVVSEFEKRDKMTKHLEKIMEDKDNKILIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKT--GKSPIMVATDVASRGIDVRNITHVFNYDYPNNSEDYIHRI 484

HSP 2 Score: 32.3426 bits (72), Expect = 1.248e-26
Identity = 12/21 (57.14%), Postives = 14/21 (66.67%), Query Frame = 2

Query: 1856 DYLHRTGRTARMGAKGKVTSL 1918
            DY+HR GRT R G KG   +L
Sbjct:  479 DYIHRIGRTGRAGQKGTAITL 499

HSP 3 Score: 56.9954 bits (136), Expect = 6.540e-7
Identity = 38/99 (38.38%), Postives = 50/99 (50.51%), Query Frame = 2

Query:  488 DSFEELGLSEEVMGAVREMGIEVPTEIQCIGIPFVLEEKSVVLGSHTGSGKTLAYMLPLVQLLRRDEAILGMLTKP-----RRPRAVVLCPTRELSEQV 769
            ++F+E G    VM  V+  G   PT IQ  G P  L  + VV  + TGSGKTL Y LP         AI+ +  +P       P  +VL PTREL+ Q+
Sbjct:  149 ETFDEAGFPAYVMTEVKAQGFPAPTPIQSQGWPMALSGRDVVGIAETGSGKTLTYCLP---------AIVHINAQPLLAPGDGPIVLVLAPTRELAVQI 238

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0098040 vs. ExPASy Swiss-Prot
Match: DBP2_BOTFB (ATP-dependent RNA helicase dbp2 OS=Botryotinia fuckeliana (strain B05.10) GN=dbp2 PE=3 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 1.281e-26
Identity = 77/249 (30.92%), Postives = 126/249 (50.60%), Query Frame = 3

Query: 1014 ARFRSTMVSGGGRLRSQEDSLNNPIDMVVGTPGRVLQHIDDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLGPLKNRALKPSGQGFQTILVTATMTKAVQKLIDEEFQGIEHLRTSTLHKKIASARH---DFIKLLGSENKLEALLQVLEPSLA-KGNRVMVFCNTLNSSRAVDHFLGENQISTVNYHGEVPPEQRVENLNKFKSDDGDCPTLVCTDLAARGLDL-DVNHVVMFDFPLNSVSNISLI 1745
            +R R+T V GG     Q   L   +++ + TPGR++  I+ G      + YLVLDEAD M D GF P IRK LG      ++P     QT + +AT  K V+ L  +       +   +L     SA H     ++++    K + + + LE  +  K N++++F  T   +  +  FL ++    ++ HG+    +R   LN+FK+  G  P +V TD+A+RG+D+ ++ HV  +D+P NS   I  I
Sbjct:  202 SRIRNTCVYGGVPKGGQIRDLAKGVEVCIATPGRLIDMIESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKILG-----QIRPDR---QTCMWSATWPKEVRALASDYLNEFIQVNIGSLE---LSANHRITQIVEVVSEFEKRDKMTKHLEKIMEDKDNKILIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKT--GKSPIMVATDVASRGIDVRNITHVFNYDYPNNSEDYIHRI 437

HSP 2 Score: 32.3426 bits (72), Expect = 1.281e-26
Identity = 12/21 (57.14%), Postives = 14/21 (66.67%), Query Frame = 2

Query: 1856 DYLHRTGRTARMGAKGKVTSL 1918
            DY+HR GRT R G KG   +L
Sbjct:  432 DYIHRIGRTGRAGQKGTAITL 452

HSP 3 Score: 56.9954 bits (136), Expect = 6.497e-7
Identity = 38/99 (38.38%), Postives = 50/99 (50.51%), Query Frame = 2

Query:  488 DSFEELGLSEEVMGAVREMGIEVPTEIQCIGIPFVLEEKSVVLGSHTGSGKTLAYMLPLVQLLRRDEAILGMLTKP-----RRPRAVVLCPTRELSEQV 769
            ++F+E G    VM  V+  G   PT IQ  G P  L  + VV  + TGSGKTL Y LP         AI+ +  +P       P  +VL PTREL+ Q+
Sbjct:  102 ETFDEAGFPAYVMTEVKAQGFPAPTPIQSQGWPMALSGRDVVGIAETGSGKTLTYCLP---------AIVHINAQPLLAPGDGPIVLVLAPTRELAVQI 191

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0098040 vs. ExPASy Swiss-Prot
Match: DBP2_NEOFI (ATP-dependent RNA helicase dbp2 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=dbp2 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.560e-26
Identity = 71/246 (28.86%), Postives = 127/246 (51.63%), Query Frame = 3

Query: 1014 ARFRSTMVSGGGRLRSQEDSLNNPIDMVVGTPGRVLQHIDDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLGPLKNRALKPSGQGFQTILVTATMTKAVQKLIDEEFQGIEHLRTSTLHKKIASARHDFIKLLGSENKLEALLQVLEPSLA-KGNRVMVFCNTLNSSRAVDHFLGENQISTVNYHGEVPPEQRVENLNKFKSDDGDCPTLVCTDLAARGLDL-DVNHVVMFDFPLNSVSNISLI 1745
            +R R+T V GG     Q   L+  +++ + TPGR++  ++ G      + YLVLDEAD M D GF P IRK +       ++P     QT + +AT  K V++L  +       +   ++           ++++    K + +++ LE  +  +GN+ ++F  T   +  +  FL ++    ++ HG+   ++R   LN+FK+  G  P +V TD+A+RG+D+ D+ HV+ +D+P NS   I  I
Sbjct:  219 SRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIIS-----QIRPD---RQTCMWSATWPKEVRQLATDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIKHLEKIMENRGNKCLIFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKT--GKSPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYIHRI 454

HSP 2 Score: 33.113 bits (74), Expect = 1.560e-26
Identity = 12/26 (46.15%), Postives = 16/26 (61.54%), Query Frame = 2

Query: 1856 DYLHRTGRTARMGAKGKVTSLVAKKD 1933
            DY+HR GRT R GAKG   +    ++
Sbjct:  449 DYIHRIGRTGRAGAKGTAITFFTTEN 474

HSP 3 Score: 59.3066 bits (142), Expect = 1.321e-7
Identity = 37/99 (37.37%), Postives = 52/99 (52.53%), Query Frame = 2

Query:  488 DSFEELGLSEEVMGAVREMGIEVPTEIQCIGIPFVLEEKSVVLGSHTGSGKTLAYMLPLVQLLRRDEAILGMLTKP-----RRPRAVVLCPTRELSEQV 769
            ++F+E G  + V+  V+  G E PT IQ  G P  L  + VV  + TGSGKTL Y LP         AI+ +  +P       P  ++L PTREL+ Q+
Sbjct:  119 ENFDEAGFPQYVLSEVKAQGFERPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLP---------AIVHINAQPLLAPGDGPIVLILAPTRELAVQI 208

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0098040 vs. ExPASy Swiss-Prot
Match: DDX3_DROME (ATP-dependent RNA helicase bel OS=Drosophila melanogaster GN=bel PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.913e-26
Identity = 82/254 (32.28%), Postives = 127/254 (50.00%), Query Frame = 3

Query:  981 VFSVAKSISHHARFRSTMVSGGGRLRSQEDSLNNPIDMVVGTPGRVLQHIDDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLGPLKNRALKPSGQGFQTILVTATMTKAVQKLIDEEFQGIEHL---RTSTLHKKIASARHDFIKLLGSENKLEALLQVLE-----PSLAKGNRVMVFCNTLNSSRAVDHFLGENQISTVNYHGEVPPEQRVENLNKFKSDDGDCPTLVCTDLAARGLDLD-VNHVVMFDFP 1715
            +F  AK  ++ +R R  ++ GG     Q   L+    ++V TPGR+   I  G +   +I++LVLDEAD M D GF P IR+ +  L    + P+GQ  QT++ +AT  K +Q+L  +       L   R  +  + I       I  +   +K   LL +L      P   K +  ++F  T   + +++ FL +      + HG+   ++R E L  F+S  GDCP LV T +AARGLD+  V HV+ FD P
Sbjct:  394 IFEEAKKFAYRSRMRPAVLYGGNNTSEQMRELDRGCHLIVATPGRLEDMITRGKVGLENIRFLVLDEADRMLDMGFEPQIRRIVEQLN---MPPTGQ-RQTLMFSATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQT----ILWVYEPDKRSYLLDLLSSIRDGPEYTKDSLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALRCFRS--GDCPILVATAVAARGLDIPHVKHVINFDLP 637

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0098040 vs. ExPASy Swiss-Prot
Match: DBP2_ASPCL (ATP-dependent RNA helicase dbp2 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=dbp2 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.642e-26
Identity = 73/249 (29.32%), Postives = 130/249 (52.21%), Query Frame = 3

Query: 1014 ARFRSTMVSGGGRLRSQEDSLNNPIDMVVGTPGRVLQHIDDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLGPLKNRALKPSGQGFQTILVTATMTKAVQKLIDEEFQGIEHLRTSTLHKKIASARH---DFIKLLGSENKLEALLQVLEPSLA-KGNRVMVFCNTLNSSRAVDHFLGENQISTVNYHGEVPPEQRVENLNKFKSDDGDCPTLVCTDLAARGLDL-DVNHVVMFDFPLNSVSNISLI 1745
            +R R+T V GG     Q   L+  +++ + TPGR++  ++ G      + YLVLDEAD M D GF P IRK +       ++P     QT + +AT  K V++L  +       +   ++     SA H     ++++    K + +++ LE  +  + N++++F  T   +  +  FL ++    ++ HG+   ++R   LN+FK+  G  P +V TD+A+RG+D+ D+ HV+ +D+P NS   I  I
Sbjct:  225 SRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIIS-----QIRPD---RQTCMWSATWPKEVRQLASDFLNDYIQVNIGSMD---LSANHRITQIVEVVSDFEKRDKMIKHLEKIMEDRSNKILIFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKA--GKSPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYIHRI 460

HSP 2 Score: 33.113 bits (74), Expect = 2.642e-26
Identity = 12/21 (57.14%), Postives = 14/21 (66.67%), Query Frame = 2

Query: 1856 DYLHRTGRTARMGAKGKVTSL 1918
            DY+HR GRT R GAKG   + 
Sbjct:  455 DYIHRIGRTGRAGAKGTAITF 475

HSP 3 Score: 59.6918 bits (143), Expect = 7.854e-8
Identity = 38/99 (38.38%), Postives = 52/99 (52.53%), Query Frame = 2

Query:  488 DSFEELGLSEEVMGAVREMGIEVPTEIQCIGIPFVLEEKSVVLGSHTGSGKTLAYMLPLVQLLRRDEAILGMLTKP-----RRPRAVVLCPTRELSEQV 769
            ++F+E G  + V+  V+  G E PT IQ  G P  L  + VV  + TGSGKTL Y LP         AI+ +  +P       P  +VL PTREL+ Q+
Sbjct:  125 ETFDEAGFPQYVLSEVKSQGFERPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLP---------AIVHINAQPLLAPGDGPIVLVLAPTRELAVQI 214

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0098040 vs. ExPASy Swiss-Prot
Match: DRS1_CANAL (ATP-dependent RNA helicase DRS1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=DRS1 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.105e-26
Identity = 84/269 (31.23%), Postives = 133/269 (49.44%), Query Frame = 3

Query:  918 YSPTLLTSFLFVTRLMLVAF*VFSVAKSISHHAR-FRSTMVSGGGRLRSQEDSLNNPIDMVVGTPGRVLQHIDDG-NMVYGDIKYLVLDEADTMFDRGFGPDIRKFLGPLKNRALKPSGQGFQTILVTATMTKAVQKLIDEEFQGIEHLRTSTLHKKIASARHDFIKLLGSENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLGENQISTVNYHGEVPPEQRVENLNKFKSDDGDCPTLVCTDLAARGLDL-DVNHVVMFDFP 1715
            Y P+  T  + +T    +A  V+   K +SHH       +  GG  LR QE+ L    D+V+ TPGR++ HI +  +    DI+ LV+DEAD M + GF  ++ + L      +L P  +  QT+L +ATM   +Q LI    Q    +         +     F+++   +    ALL  L   ++  +RV+VF     ++  +   LG   +     HG +  EQR++N+  FKS   + P L+CTDLAARGLD+  +  V+ +D P
Sbjct:  194 YKPSTSTKVIILTPTRELALQVYEFGKKLSHHVNNLNIGLAVGGLNLRQQEEQLKTRPDIVIATPGRLIDHIRNSPSFSVQDIQVLVIDEADRMLEEGFQDELTEIL------SLIPKHKR-QTLLFSATMNTRIQDLIQLSLQKPVRIMIDPPKSVASKLLQQFVRIRKRDQLKPALLYQLLKGVS--SRVVVFVARKETAHRLRIVLGLLGLKVSELHGALTQEQRLQNVKNFKS--LEVPVLICTDLAARGLDIPKIELVINYDMP 451

HSP 2 Score: 63.5438 bits (153), Expect = 6.287e-9
Identity = 39/94 (41.49%), Postives = 53/94 (56.38%), Query Frame = 2

Query:  491 SFEELGLSEEVMGAVREMGIEVPTEIQCIGIPFVLEEKSVVLGSHTGSGKTLAYMLPLVQLLRRDEAILGMLTKPR-RPRAVVLCPTRELSEQV 769
            SF+ L LS  V+  + E+    PT IQ   IP  L  K +V G+ TGSGKT AYM+P+++ L         L KP    + ++L PTREL+ QV
Sbjct:  131 SFQTLQLSRPVLKGIAELKFTKPTPIQSASIPIALLGKDIVAGAQTGSGKTGAYMIPIIERL---------LYKPSTSTKVIILTPTRELALQV 215

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0098040 vs. ExPASy Swiss-Prot
Match: DBP2_MAGO7 (ATP-dependent RNA helicase DBP2 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=DBP2 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.730e-26
Identity = 69/248 (27.82%), Postives = 127/248 (51.21%), Query Frame = 3

Query: 1014 ARFRSTMVSGGGRLRSQEDSLNNPIDMVVGTPGRVLQHIDDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLGPLKNRALKPSGQGFQTILVTATMTKAVQKLIDEEFQGIEHLRTSTLHKKIASARHDFIKLLGSENKLEALLQVLEPSL---AKGNRVMVFCNTLNSSRAVDHFLGENQISTVNYHGEVPPEQRVENLNKFKSDDGDCPTLVCTDLAARGLDL-DVNHVVMFDFPLNSVSNISLI 1745
            +R R+T V GG     Q   L+  +++ + TPGR++  ++ G      + YLVLDEAD M D GF P IRK +G      ++P     QT++ +AT  K V+ +  +  Q    +   +L           ++++    K + +++ +E  +      N++++F  T   +  +  FL ++    ++ HG+    +R   L++FK+  G  P +V TD+A+RG+D+ ++ HV+ +D+P NS   I  I
Sbjct:  225 SRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDMLESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIG-----QIRPD---RQTLMWSATWPKEVRNMAADFLQDFIQVNIGSLDLSANHRITQIVEVVSESEKRDRMIRHMEKVMDGKDSKNKILIFVGTKRVADEITRFLRQDGWPALSIHGDKQQNERDWVLDQFKT--GKSPIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRI 462

HSP 2 Score: 33.113 bits (74), Expect = 5.730e-26
Identity = 12/21 (57.14%), Postives = 14/21 (66.67%), Query Frame = 2

Query: 1856 DYLHRTGRTARMGAKGKVTSL 1918
            DY+HR GRT R GAKG   + 
Sbjct:  457 DYIHRIGRTGRAGAKGTAITF 477

HSP 3 Score: 57.7658 bits (138), Expect = 3.479e-7
Identity = 37/99 (37.37%), Postives = 50/99 (50.51%), Query Frame = 2

Query:  488 DSFEELGLSEEVMGAVREMGIEVPTEIQCIGIPFVLEEKSVVLGSHTGSGKTLAYMLPLVQLLRRDEAILGMLTKP-----RRPRAVVLCPTRELSEQV 769
            ++F+E G    VM  V+  G   PT IQ  G P  L  + VV  + TGSGKTL Y LP         AI+ +  +P       P  ++L PTREL+ Q+
Sbjct:  125 ETFDEAGFPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLP---------AIVHINAQPLLAPGDGPIVLILAPTRELAVQI 214

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0098040 vs. ExPASy TrEMBL
Match: J3KX36_ORYBR (Uncharacterized protein OS=Oryza brachyantha GN=OB01G15420 PE=4 SV=1)

HSP 1 Score: 464.151 bits (1193), Expect = 1.605e-147
Identity = 213/249 (85.54%), Postives = 232/249 (93.17%), Query Frame = 3

Query:  981 VFSVAKSISHHARFRSTMVSGGGRLRSQEDSLNNPIDMVVGTPGRVLQHIDDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLGPLKNRALKPSGQGFQTILVTATMTKAVQKLIDEEFQGIEHLRTSTLHKKIASARHDFIKLLGSENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLGENQISTVNYHGEVPPEQRVENLNKFKSDDGDCPTLVCTDLAARGLDLDVNHVVMFDFPLNSV 1727
            VF VAKSISHHARFRSTMVSGG R+R QEDSLN P+DMVVGTPGR+L HI DGNMVYGDIKYLVLDEADTMFD+GFGPDIRKFL PLKNRA KP  QGFQT+LVTATMTKAVQKLIDEEF+GI HLRTST  K++A+ARHDFIKL GSENKLEALLQVLEPSLAKGN++MVFCNTLNSSRAVDHFL ENQISTVNYHGEVP E+RVENLNKF++++GDCPTLVCTDLAARGLDLDV+HV+MFDFP NS+
Sbjct:  226 VFRVAKSISHHARFRSTMVSGGSRIRPQEDSLNMPVDMVVGTPGRILDHIKDGNMVYGDIKYLVLDEADTMFDQGFGPDIRKFLAPLKNRAAKPGDQGFQTVLVTATMTKAVQKLIDEEFEGIVHLRTSTFQKRVATARHDFIKLSGSENKLEALLQVLEPSLAKGNKIMVFCNTLNSSRAVDHFLTENQISTVNYHGEVPAEERVENLNKFRNEEGDCPTLVCTDLAARGLDLDVDHVIMFDFPSNSI 474

HSP 2 Score: 164.081 bits (414), Expect = 7.875e-39
Identity = 77/97 (79.38%), Postives = 84/97 (86.60%), Query Frame = 2

Query:  482 MADSFEELGLSEEVMGAVREMGIEVPTEIQCIGIPFVLEEKSVVLGSHTGSGKTLAYMLPLVQLLRRDEAILGMLTKPRRPRAVVLCPTRELSEQVL 772
            + DSFEELGL EEVM A+ EMGI  PTEIQC+G+P VL   SVVLGSHTGSGKTLAY+LPLVQLLRRDEA+LGM  KPRRPRAVVLCPTREL+EQV 
Sbjct:  131 VVDSFEELGLGEEVMAALGEMGISKPTEIQCVGVPSVLAGTSVVLGSHTGSGKTLAYLLPLVQLLRRDEAVLGMSMKPRRPRAVVLCPTRELTEQVF 227

HSP 3 Score: 103.219 bits (256), Expect = 2.293e-19
Identity = 77/181 (42.54%), Postives = 94/181 (51.93%), Query Frame = 2

Query: 1853 IDYLHRTGRTARMGAKGKVTSLVAKKDLLLAERIEEAIRKNESLESLTVDNVRRDTARTRITEQKGK-------NVKLFKTSNLKNKTKAVSASVRTSGKEPTIAKSVKSTXXXXXXXXXXXXXXSLETAKTSAVRKKNRSVGGSSE-------------------GKKLKVVGFRGQASS 2317
            IDYLHRTGRTARMGAKGKVTSLVAKKD+ LA RIEEAI+KNESLE+LT +NVRR          KG+       N K  +   L  K+  V     +S +   + K   +T+  +   K    SKS  + K   VR    S  GS +                   G KL VVGFRG++S 
Sbjct:  474 IDYLHRTGRTARMGAKGKVTSLVAKKDVALATRIEEAIKKNESLEALTTNNVRRAATSPHHASTKGRPSGLKVVNQKGRRGVALSTKSSRVVKDTTSSRRSSRVVKD--TTSRRRSPAKNQPKSKSTSSGKAKPVRSAKPSKSGSPKVAKSRPRPEGRKGDALNKLGTKLSVVGFRGRSSG 652

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0098040 vs. ExPASy TrEMBL
Match: K3XHI7_SETIT (Uncharacterized protein OS=Setaria italica GN=Si000707m.g PE=4 SV=1)

HSP 1 Score: 456.062 bits (1172), Expect = 3.280e-147
Identity = 213/249 (85.54%), Postives = 232/249 (93.17%), Query Frame = 3

Query:  981 VFSVAKSISHHARFRSTMVSGGGRLRSQEDSLNNPIDMVVGTPGRVLQHIDDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLGPLKNRALKPSGQGFQTILVTATMTKAVQKLIDEEFQGIEHLRTSTLHKKIASARHDFIKLLGSENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLGENQISTVNYHGEVPPEQRVENLNKFKSDDGDCPTLVCTDLAARGLDLDVNHVVMFDFPLNSV 1727
            V+ VAKSISHHARFRSTMVSGG RLR QEDSLN P+DMVVGTPGR+L HI DGNMVYGDIKYLVLDEADTMFD+GFGPDIRKFL PLKNRA KP  QGFQT+LVTATMTKAVQKLIDEEF+GI HLRTST  K++A+ARHDFIKL GSENKLEALLQVLEPSLAKGN++MVFCNTLNSSRAVDHFL ENQISTVNYHGEVP E+RVENLNKF++++GDCPTLVCTDLAARGLDLDV+HV+MFDFP NS+
Sbjct:  192 VYRVAKSISHHARFRSTMVSGGTRLRPQEDSLNMPVDMVVGTPGRILDHIKDGNMVYGDIKYLVLDEADTMFDQGFGPDIRKFLAPLKNRATKPGDQGFQTVLVTATMTKAVQKLIDEEFEGIVHLRTSTFQKRVATARHDFIKLTGSENKLEALLQVLEPSLAKGNKIMVFCNTLNSSRAVDHFLTENQISTVNYHGEVPAEERVENLNKFRNEEGDCPTLVCTDLAARGLDLDVDHVIMFDFPSNSI 440

HSP 2 Score: 162.925 bits (411), Expect = 2.802e-39
Identity = 84/127 (66.14%), Postives = 100/127 (78.74%), Query Frame = 2

Query:  389 SSPSMPPQNLPVLGQETEAYDXXXXXXXXXIMADSFEELGLSEEVMGAVREMGIEVPTEIQCIGIPFVLEEKSVVLGSHTGSGKTLAYMLPLVQLLRRDEAILGMLTKPRRPRAVVLCPTRELSEQV 769
             SP++PP+     G E  +    +G++ +   A+SFEELGL EEVM A+ EMGI  PTEIQC+G+P VL+  SVVLGSHTGSGKTLAY+LPLVQLLRRDEA+LGM  KPRRPRAVVLCPTREL+EQV
Sbjct:   68 GSPNLPPRGKAARGGERTSQHPQQGRRVEA--AESFEELGLGEEVMAALGEMGISKPTEIQCVGVPAVLDGTSVVLGSHTGSGKTLAYLLPLVQLLRRDEAMLGMSMKPRRPRAVVLCPTRELTEQV 192

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0098040 vs. ExPASy TrEMBL
Match: A0A072UJK7_MEDTR (DEAD-box ATP-dependent RNA helicase OS=Medicago truncatula GN=MTR_6g039840 PE=4 SV=1)

HSP 1 Score: 457.603 bits (1176), Expect = 3.690e-147
Identity = 211/249 (84.74%), Postives = 234/249 (93.98%), Query Frame = 3

Query:  981 VFSVAKSISHHARFRSTMVSGGGRLRSQEDSLNNPIDMVVGTPGRVLQHIDDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLGPLKNRALKPSGQGFQTILVTATMTKAVQKLIDEEFQGIEHLRTSTLHKKIASARHDFIKLLGSENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLGENQISTVNYHGEVPPEQRVENLNKFKSDDGDCPTLVCTDLAARGLDLDVNHVVMFDFPLNSV 1727
            VF VAK+ISHHARFR TMVSGGGRLR QE+SL+NPIDMVVGTPGR+LQHI++GNMVYGDI+Y+VLDEADTMFDRGFGPDI+KFL PLK+RA KP   GFQT+LVTATMTKAVQ L+DEEFQGI HLRTS+LHKKI++ARHDFIKL G+ENKL++LLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFL ENQISTVNYHGEVP  QRVENLNKFKS++ DCPTLVCTDLAARGLDLDV+HV+MFDFPLNS+
Sbjct:   26 VFRVAKAISHHARFRCTMVSGGGRLRPQEESLSNPIDMVVGTPGRILQHIEEGNMVYGDIQYVVLDEADTMFDRGFGPDIKKFLAPLKHRASKPDSLGFQTVLVTATMTKAVQNLVDEEFQGIVHLRTSSLHKKISNARHDFIKLSGTENKLDSLLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLEENQISTVNYHGEVPAAQRVENLNKFKSNNDDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSI 274

HSP 2 Score: 102.064 bits (253), Expect = 2.909e-19
Identity = 50/79 (63.29%), Postives = 64/79 (81.01%), Query Frame = 2

Query: 1853 IDYLHRTGRTARMGAKGKVTSLVAKKDLLLAERIEEAIRKNESLESLTVDNVRRDTARTRITEQKGKNVKLFKTSNLKN 2089
            IDYLHRTGRTARMGAKGK+TSLV KKD  LA +IEEAI+KNE+LE++T ++VR D  R +ITEQ+ KN  + K S +++
Sbjct:  274 IDYLHRTGRTARMGAKGKITSLVTKKDYSLATKIEEAIKKNENLEAITKESVRMDVTRNQITEQRRKNKNVVKPSKVRD 352

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0098040 vs. ExPASy TrEMBL
Match: A0A022R984_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a002525mg PE=4 SV=1)

HSP 1 Score: 462.996 bits (1190), Expect = 4.323e-147
Identity = 218/249 (87.55%), Postives = 233/249 (93.57%), Query Frame = 3

Query:  981 VFSVAKSISHHARFRSTMVSGGGRLRSQEDSLNNPIDMVVGTPGRVLQHIDDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLGPLKNRALKPSGQGFQTILVTATMTKAVQKLIDEEFQGIEHLRTSTLHKKIASARHDFIKLLGSENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLGENQISTVNYHGEVPPEQRVENLNKFKSDDGDCPTLVCTDLAARGLDLDVNHVVMFDFPLNSV 1727
            VF VAKSISHHARFRSTMVSGGGR+R QEDSLN+PIDMVVGTPGRVLQHI++GNMVYGDI+YLVLDEADTMFDRGFGPDI KFL PLKNRA KP G  FQT+LVTATMTK VQKL+D+EFQGI HLRTS+LHKKIA+ARHDFIKL GSENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFL ENQI TVNYHGEVP EQRVENL KFKS++GDCPTLVCTDLAARGLDLDV+HV+MFDFP NS+
Sbjct:  220 VFHVAKSISHHARFRSTMVSGGGRIRPQEDSLNSPIDMVVGTPGRVLQHIEEGNMVYGDIRYLVLDEADTMFDRGFGPDIHKFLAPLKNRASKPDGLEFQTVLVTATMTKPVQKLVDDEFQGIIHLRTSSLHKKIANARHDFIKLSGSENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLSENQILTVNYHGEVPAEQRVENLEKFKSNEGDCPTLVCTDLAARGLDLDVDHVIMFDFPSNSI 468

HSP 2 Score: 205.297 bits (521), Expect = 1.275e-52
Identity = 123/222 (55.41%), Postives = 144/222 (64.86%), Query Frame = 2

Query:  161 MAATSRTLLFVSLLSSPKHFSYYP----------FLKPSRV-FRGFKPFCSAP-SPILTTIDPDD----LKHSMLLERLRTRHLKHSAKLPSSSPSMPPQNLP--VLGQETEAYDXXXXXXXXXIMADSFEELGLSEEVMGAVREMGIEVPTEIQCIGIPFVLEEKSVVLGSHTGSGKTLAYMLPLVQLLRRDEAILGMLTKPRRPRAVVLCPTRELSEQVL 772
            M  T++ L F SLLS PK FS+            +  P RV F  F+P C+A  +  +  ID  +    +KHS+LLERLR RHLK SA+  S S +  P +L     G+  E     + K        SFEELGLSEEV+GA+ EMGI VPTEIQCIG+P VL  KSVVLGSHTGSGKTLAY+LPLVQLLRRDE + GML KPRRPRAVVLCPTREL EQV 
Sbjct:    1 MGTTAKVLSF-SLLSLPKRFSFNRPIYLSIPLNVYTTPYRVDFHRFRPLCTAAATATIPEIDETETLQPIKHSILLERLRQRHLKDSAQTFSKSVAANPSSLSGSKKGKNGEIEGSRRNKGGAADADSSFEELGLSEEVIGALVEMGISVPTEIQCIGMPAVLNGKSVVLGSHTGSGKTLAYLLPLVQLLRRDEELHGMLMKPRRPRAVVLCPTRELCEQVF 221

HSP 3 Score: 117.472 bits (293), Expect = 9.216e-24
Identity = 60/95 (63.16%), Postives = 74/95 (77.89%), Query Frame = 2

Query: 1853 IDYLHRTGRTARMGAKGKVTSLVAKKDLLLAERIEEAIRKNESLESLTVDNVRRDTARTRITEQKGKNVKLFKTSNLKNKTKAVSASVRTSGKEP 2137
            IDYLHRTGRTARMGAKGKVTSLVA+K+  LA  IEEA+ KNESLES++VD+++RD AR+ I+EQK KN ++ K SN +NK    SA+   S  EP
Sbjct:  468 IDYLHRTGRTARMGAKGKVTSLVARKNTNLAALIEEALMKNESLESISVDSIKRDLARSHISEQKDKNERMVKGSNSRNKPATNSAAPTKSSYEP 562

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0098040 vs. ExPASy TrEMBL
Match: B8ADM4_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_00680 PE=4 SV=1)

HSP 1 Score: 461.455 bits (1186), Expect = 4.875e-147
Identity = 213/249 (85.54%), Postives = 232/249 (93.17%), Query Frame = 3

Query:  981 VFSVAKSISHHARFRSTMVSGGGRLRSQEDSLNNPIDMVVGTPGRVLQHIDDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLGPLKNRALKPSGQGFQTILVTATMTKAVQKLIDEEFQGIEHLRTSTLHKKIASARHDFIKLLGSENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLGENQISTVNYHGEVPPEQRVENLNKFKSDDGDCPTLVCTDLAARGLDLDVNHVVMFDFPLNSV 1727
            VF VAKSISHHARFRSTMVSGG R+R QEDSLN P+DMVVGTPGR+L HI DGNMVYGDIKYLVLDEADTMFD+GFGPDIRKFL PLKNRA KP  QGFQT+LVTATMTKAVQKLIDEEF+GI HLRT+T  K++A+ARHDFIKL GSENKLEALLQVLEPSLAKGN+VMVFCNTLNSSRAVDHFL ENQISTVNYHGEVP E+RVENLNKF++++GDCPTLVCTDLAARGLDLDV+HV+MFDFP NS+
Sbjct:  201 VFRVAKSISHHARFRSTMVSGGSRIRPQEDSLNMPVDMVVGTPGRILDHIKDGNMVYGDIKYLVLDEADTMFDQGFGPDIRKFLAPLKNRAAKPGDQGFQTVLVTATMTKAVQKLIDEEFEGIVHLRTTTFQKRVATARHDFIKLSGSENKLEALLQVLEPSLAKGNKVMVFCNTLNSSRAVDHFLTENQISTVNYHGEVPAEERVENLNKFRNEEGDCPTLVCTDLAARGLDLDVDHVIMFDFPSNSI 449

HSP 2 Score: 171.4 bits (433), Expect = 1.937e-41
Identity = 94/162 (58.02%), Postives = 115/162 (70.99%), Query Frame = 2

Query:  323 KHSMLLERLRTRHLKHSAKLPSSSPSMPPQNLPVLGQETEAYDXXXXXXXXXIMADSFEELGLSEEVMGAVREMGIEVPTEIQCIGIPFVLEEKSVVLGSHTGSGKTLAYMLPLVQLLRRDEAILGMLTKPRRPRAVVLCPTRELSEQVLVTHPAMIWTSEF 808
            +H +LLERLR RHLK    +P+++P  P Q     G       +   +K++  + +SFEELGL EEVM A+ EMGI  PTEIQC+G+P VL   SVVLGSHTGSGKTLAY+LPLVQLLRRDEA+LGM  KPRRPRAVVLCPTREL+EQV     ++   + F
Sbjct:   60 RHELLLERLRQRHLKG---VPAATPR-PAQREKGRGG---GGAQELQQKRRVEVVESFEELGLGEEVMAALGEMGISKPTEIQCVGVPAVLAGTSVVLGSHTGSGKTLAYLLPLVQLLRRDEAMLGMSMKPRRPRAVVLCPTRELTEQVFRVAKSISHHARF 214

HSP 3 Score: 87.8113 bits (216), Expect = 1.654e-14
Identity = 66/169 (39.05%), Postives = 88/169 (52.07%), Query Frame = 2

Query: 1853 IDYLHRTGRTARMGAKGKVTSLVAKKDLLLAERIEEAIRKNESLESLTVDNVRRDTARTRITEQKGK-------NVKLFKTSNLKNK-TKAVSASVRTSGKEPTIAK-SVKSTXXXXXXXXXXXXXXSLETAKTSAVRKKNRSVGGSSE-----GKKLKVVGFRGQASS 2317
            IDYLHRTGRTARMGAKG     VAKKD+ LA RIEEA++KNESLE+LT +NVRR     +    KG+       N K  +   L+ K ++ V  +  +  + PT ++   KST+  K             +      + + R  G         G KL VVGFRG++S 
Sbjct:  449 IDYLHRTGRTARMGAKG-----VAKKDVTLATRIEEAMKKNESLEALTTNNVRRAAVNPQYPSTKGRPSAIKVVNQKGRRGVALQTKSSRVVKDTTSSRRRSPTKSQPRSKSTSSGKAKPVRSAKPSKSSSPSPKVAKSRPRPEGRKGNALNKLGSKLSVVGFRGRSSG 612

The following BLAST results are available for this feature:

BLAST of g.barbadense_cottongen_reftransV1_0098040 vs. ExPASy Swiss-Prot
BLAST of g.barbadense_cottongen_reftransV1_0098040 vs. ExPASy TrEMBL

BLAST of g.barbadense_cottongen_reftransV1_0098040 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 25


Match Name	E-value	Identity	Description
RH39_ORYSJ	6.234e-149	85.54	DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sa...	[more]
RH39_ARATH	6.444e-146	84.74	DEAD-box ATP-dependent RNA helicase 39 OS=Arabidop...	[more]
DBP2_GIBZE	1.121e-26	28.17	ATP-dependent RNA helicase DBP2 OS=Gibberella zeae...	[more]
DBP2_SCLS1	1.248e-26	30.08	ATP-dependent RNA helicase dbp2 OS=Sclerotinia scl...	[more]
DBP2_BOTFB	1.281e-26	30.92	ATP-dependent RNA helicase dbp2 OS=Botryotinia fuc...	[more]
DBP2_NEOFI	1.560e-26	28.86	ATP-dependent RNA helicase dbp2 OS=Neosartorya fis...	[more]
DDX3_DROME	1.913e-26	32.28	ATP-dependent RNA helicase bel OS=Drosophila melan...	[more]
DBP2_ASPCL	2.642e-26	29.32	ATP-dependent RNA helicase dbp2 OS=Aspergillus cla...	[more]
DRS1_CANAL	5.105e-26	31.23	ATP-dependent RNA helicase DRS1 OS=Candida albican...	[more]
DBP2_MAGO7	5.730e-26	27.82	ATP-dependent RNA helicase DBP2 OS=Magnaporthe ory...	[more]

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BLAST of g.barbadense_cottongen_reftransV1_0098040 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
J3KX36_ORYBR	1.605e-147	85.54	Uncharacterized protein OS=Oryza brachyantha GN=OB...	[more]
K3XHI7_SETIT	3.280e-147	85.54	Uncharacterized protein OS=Setaria italica GN=Si00...	[more]
A0A072UJK7_MEDTR	3.690e-147	84.74	DEAD-box ATP-dependent RNA helicase OS=Medicago tr...	[more]
A0A022R984_ERYGU	4.323e-147	87.55	Uncharacterized protein OS=Erythranthe guttata GN=...	[more]
B8ADM4_ORYSI	4.875e-147	85.54	Putative uncharacterized protein OS=Oryza sativa s...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001650	Helicase, C-terminal	SMART	SM00490	helicmild6	coord: 163..230 e-value: 5.6E-8 score: 42.5
IPR001650	Helicase, C-terminal	PFAM	PF00271	Helicase_C	coord: 134..231 e-value: 1.8E-18 score: 66.8
IPR001650	Helicase, C-terminal	PROSITE	PS51194	HELICASE_CTER	coord: 134..243 score: 11.868
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 131..235 e-value: 1.7E-25 score: 88.7
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 2..114 e-value: 5.8E-26 score: 90.3
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 3..233
IPR011545	DEAD/DEAH box helicase domain	PFAM	PF00270	DEAD	coord: 3..98 e-value: 1.5E-18 score: 67.1
None	No IPR available	PANTHER	PTHR24031:SF247	DEAD-BOX ATP-DEPENDENT RNA HELICASE 39	coord: 1..232
None	No IPR available	PANTHER	PTHR24031	RNA HELICASE	coord: 1..232
IPR014001	Helicase superfamily 1/2, ATP-binding domain	PROSITE	PS51192	HELICASE_ATP_BIND_1	coord: 1..109 score: 16.495

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.barbadense_cottongen_reftransV1_0098040 ID=g.barbadense_cottongen_reftransV1_0098040; Name=g.barbadense_cottongen_reftransV1_0098040; organism=Gossypium barbadense; type=contig; length=2758bp
CTACTCCCAAAGTCCCAAGAGAAAATGGATGATATTGGGACCTTACCTCC
CTAGTGCCTTGAAAGCTTCGCTAATGCTGCAAACAAATACAAAGTAGCAG
CAGGGAAAACAAAACCAAAAACTATATCTGGCCTCACAGAACATGATGCA
GAAAGCTATGATGGCTGCTACTTCAAGAACTCTCCTTTTTGTCTCTCTTC
TTTCCTCTCCCAAACATTTCTCTTACTACCCTTTTCTCAAACCCTCTAGG
GTTTTTCGAGGGTTTAAGCCTTTCTGCTCTGCCCCATCCCCAATCCTCAC
CACCATTGATCCTGACGACTTGAAACACTCCATGCTACTTGAAAGGCTTA
GAACCAGACATCTCAAACATTCTGCGAAACTCCCATCCTCATCACCCTCT
ATGCCTCCACAAAACCTGCCTGTTTTGGGTCAAGAGACCGAGGCTTATGA
TAAGGGGAAAGGGAAAAAGAAGAAGAAAATTATGGCCGATAGTTTTGAGG
AGTTGGGTTTGAGTGAAGAAGTGATGGGTGCTGTTAGAGAGATGGGGATT
GAAGTTCCTACTGAGATTCAGTGTATCGGGATTCCTTTTGTATTGGAAGA
GAAAAGTGTGGTTTTGGGTTCTCATACTGGCTCTGGCAAGACTCTTGCAT
ACATGTTGCCACTTGTTCAGTTGCTGAGGCGGGATGAGGCAATATTAGGC
ATGCTAACAAAGCCCAGGCGTCCACGAGCCGTTGTTCTATGCCCCACAAG
AGAGCTGTCTGAGCAGGTTTTGGTTACTCACCCTGCTATGATTTGGACCT
CCGAATTTGTTCTATATTTATAGACTTTGACTTTTATCACTTGGGAGCAT
CCAAGATGAAAGTCTCTTGCACAGTTTTGAGTGAGAGAAAGAATAGAGGA
ATCCTCTTTTCGACTCTTACTCTCCCACTCTGCTCACTTCTTTTCTTTTT
GTTACTAGATTAATGTTAGTGGCTTTTTAGGTTTTTAGTGTGGCAAAGTC
TATTAGCCATCATGCAAGATTTAGGTCTACTATGGTCAGTGGGGGAGGCC
GGTTAAGATCACAAGAGGACTCTTTGAATAACCCAATTGACATGGTAGTT
GGGACCCCTGGTAGGGTCCTTCAACATATTGATGACGGGAACATGGTTTA
TGGTGACATCAAATACTTGGTTTTGGATGAGGCTGACACTATGTTTGACC
GTGGCTTTGGTCCTGACATTCGCAAGTTTCTTGGTCCATTAAAAAATCGT
GCTCTAAAACCCAGTGGCCAAGGATTTCAAACTATTTTAGTGACAGCTAC
AATGACAAAGGCTGTGCAGAAACTGATTGATGAGGAATTTCAAGGAATAG
AACATCTACGAACATCAACACTGCACAAGAAAATAGCATCTGCTCGTCAT
GATTTCATCAAACTTTTGGGTTCTGAAAACAAGCTGGAAGCATTACTGCA
GGTTCTTGAGCCAAGTTTAGCTAAGGGGAACAGAGTAATGGTGTTTTGTA
ATACATTAAATTCTAGCCGTGCTGTTGATCATTTTCTTGGTGAAAATCAG
ATCTCTACTGTAAATTACCATGGCGAGGTGCCTCCAGAACAAAGGGTTGA
AAACCTGAACAAGTTCAAGAGTGATGATGGAGACTGTCCCACATTGGTTT
GCACGGACTTGGCTGCTAGAGGGCTGGACTTGGATGTTAATCATGTTGTC
ATGTTTGATTTCCCTTTAAACTCTGTAAGCAACATTTCTTTGATCAACTT
GTTTGGGTCTTAGCTTGCCCTTCTCTCAAACCTGAACTCCTTTGCTTTTG
TGCCCCCTTTCTTTATGGTTCTATTTTTTCTCACTTCTGTTTGGCCTTTT
AGATCGACTACCTTCATCGCACTGGAAGAACTGCACGAATGGGTGCCAAA
GGGAAAGTAACAAGTTTGGTGGCTAAAAAGGACTTATTGTTGGCAGAAAG
GATAGAGGAGGCAATAAGAAAGAATGAGAGTTTGGAATCTCTTACAGTTG
ATAATGTCCGAAGGGATACTGCAAGGACTCGGATTACCGAGCAGAAGGGG
AAGAATGTTAAACTGTTTAAGACGTCGAATCTGAAAAACAAGACCAAAGC
TGTGTCTGCATCTGTGCGGACATCAGGGAAAGAACCCACAATTGCAAAGT
CGGTAAAATCTACTGCTCCAGCCAAACCTTCAAAGAAAATAGTTAAGGTC
TCAAAAAGTTTGGAGACTGCAAAAACATCTGCCGTACGAAAGAAAAACAG
GTCAGTTGGTGGGAGTTCTGAAGGCAAAAAACTGAAGGTTGTTGGATTTA
GGGGACAAGCTTCCTCGAGCAAGAGAGAATCGTTTACACCAAGTTGATTG
TGGTCAAAGTTTGGAATTCTGCAAATGGCTTTTAACATGTTATCAATCAA
TAGTTGAAAAAAAAAATCATGTTAAATTCATATCTCTCTTATCTTAGCAC
TTAGAATTGATTGCAACACATCTATATTTGTTTTTCCACTTTGCACCCTT
AAAGGTTAGCTGAGGATGTCTTAGTGGGAGTTTATATTAGCCTGTTGTGC
AGAAAATTCATACATGGATTGGGGATAGAGATTTAAGGGTTCCCCCCCCC
CCCTCCTGTATGGATGGGTATTGATTTTGTTCCATTACGACTGTTAATGC
AACGCATAGAATTCAGTAGTGCTTAGGGTTATAAATATACCAGGAGGAGG
TTTGTTTTTACAGGATATTCTGATATTTTGAACATTTTCTATCAATTATG
TTGACAGG

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR001650	Helicase_C-like
IPR027417	P-loop_NTPase
IPR011545	DEAD/DEAH_box_helicase_dom
IPR014001	Helicase_ATP-bd

Vocabulary: **Molecular Function**
Term	Definition
GO:0005524	ATP binding
GO:0003676	nucleic acid binding

Search form

g.barbadense_cottongen_reftransV1_0098040, g.barbadense_cottongen_reftransV1_0098040 (contig) Gossypium barbadense

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