g.barbadense_cottongen_reftransV1_0098020, g.barbadense_cottongen_reftransV1_0098020 (contig) Gossypium barbadense

Overview


Name	g.barbadense_cottongen_reftransV1_0098020
Unique Name	g.barbadense_cottongen_reftransV1_0098020
Type	contig
Organism	Gossypium barbadense (Sea Island cotton)
Sequence length	2872

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
At01	chromosome	g.barbadense_cottongen_reftransV1_0098020:2..2872 . At01:14228354..14234403 -

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium barbadense CottonGen RefTrans V1	2016-11-01
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot	2016-11-01
InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1	2016-11-02
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL	2016-11-02

Homology

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BLAST of g.barbadense_cottongen_reftransV1_0098020 vs. ExPASy Swiss-Prot
Match: PARN_ARATH (Poly(A)-specific ribonuclease PARN OS=Arabidopsis thaliana GN=PARN PE=1 SV=2)

HSP 1 Score: 390.578 bits (1002), Expect = 9.001e-121
Identity = 198/343 (57.73%), Postives = 252/343 (73.47%), Query Frame = 1

Query: 1429 EEVKTDHQRRAEMKINAAVGFRHVIDLLSSENKLIVGHNCILDIAHVHSKFLAPLPSTAEEFVSCVNKYFPSIIDTKILLNADYTLQRKMKRXXXXXXXXXXXXCPEIAHGFTRNVLSYEPCVKVEVHVDEMRSSNWNSGAKHEAGYDAFMTGCVFAQACSHLGIDFQLHSPSENLTQNEKLQKHMNLLYLSWINGDIIDLRTGNRSAELSGSNMIRKPYRKILFKNILLLWGFPSKLKPSMIRDCICKTLGPTSVICTYGIDQTAVFVQFSKAELVSDFLNLKETLEQSNDAISHLHPLSQLLEGGNTRAASYETYKEICASPISKVLFADQAEAVGIKWKT 2457
            +E K + +R AE KI +A+GFR VIDLL+SE KLIVGHNC LDIAHV+SKF+ PLPSTAE+FV+ +N +FP I+DTKILLN +  L ++MK+SSTSLSSAFS LCP+I      +    +  V ++V +D +R SNWN+G KHEAGYDAFMTGC+FAQAC+HLG DF+ HS  ++  QNEKL+K++N LYLSW  GDIIDLRTG+       SN       K  ++NI+L+W FP KLK   I++CICK  G  SV   Y +D +AVFV F  +ELV DFL LK  LE S+  +S LHPLS++LEGGNT AA YE YKEIC+S +S+V+F+DQAE VG+K +T
Sbjct:  312 KEAKDERKRLAERKIQSAIGFRQVIDLLASEKKLIVGHNCFLDIAHVYSKFVGPLPSTAEKFVASINSHFPYIVDTKILLNVNPMLHQRMKKSSTSLSSAFSSLCPQIEFSSRSSDSFLQQRVNIDVEIDNVRCSNWNAGGKHEAGYDAFMTGCIFAQACNHLGFDFKQHSQLDDFAQNEKLEKYINRLYLSWTRGDIIDLRTGH-------SNADNWRVSKFKYENIVLIWNFPRKLKARGIKECICKAFGSASVTSVYHVDDSAVFVLFKNSELVWDFLALKRQLESSDGPVSVLHPLSKILEGGNTGAADYEAYKEICSSHVSEVMFSDQAETVGVKSRT 647

HSP 2 Score: 368.622 bits (945), Expect = 1.584e-112
Identity = 189/314 (60.19%), Postives = 228/314 (72.61%), Query Frame = 3

Query:   87 MNTTRHWPQRAFILSRALSRA------FSDTPSPTFPLKHVTRSNFESALVELRSHVRAADFVAIDMEMTGVTSAPWRESFEFDRFDIRYLKVKDSAEKFAVLQFGVCPFRWDSLKQSFIAHPHNFFVFARQEIPLDRTSYEFLCQTTSMDFLAKYQFDFNACIHEGISYLSRGQEDEARKRLISPKGDQLIHPSHNLRETTDLPLVRVADVLFTERMKKRLGEWRDDLLQNRVGGPQEEKVPDDLNQQFRTVFFKMRPALSLDGFTSHQLSLIRMVTRKHFKDLTYVCFNGESTSE-ELVVYTDSESDKARLM 1007
            M   + WP R+ + S + S A       + + +  FPLKHVTRSNFE+ L +LRS V+AADFVAID+EMTGVTSAPWR+S EFDR+D+RYLKVKDSAEKFAV+QFGVCPFRWDS  QSF+++PHNFFVF RQE+  D  ++EFLCQTTSMDFLAKYQFDFN CIHEGISYLSR +E+EA KRL    G+  I  S    ET +L LVR+ADVLF  RM+K L EWR  LL       +  ++ +  NQ   TVF  MRPALSL GFTSHQL ++  V RKHF DL Y+  N +S+S  ++VVYTDS+SDK  LM
Sbjct:    1 MRRHKRWPLRSLVCSFSSSAAETVTTSTAASATAAFPLKHVTRSNFETTLNDLRSLVKAADFVAIDLEMTGVTSAPWRDSLEFDRYDVRYLKVKDSAEKFAVVQFGVCPFRWDSRTQSFVSYPHNFFVFPRQELTFDPPAHEFLCQTTSMDFLAKYQFDFNTCIHEGISYLSRREEEEASKRLKMLHGEDGIDSSG---ETEELKLVRLADVLFAARMEKLLNEWRSGLLHGGNASSEFPRISNGSNQSMETVFHHMRPALSLKGFTSHQLRVLNSVLRKHFGDLVYIHSNDKSSSSRDIVVYTDSDSDKENLM 311

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BLAST of g.barbadense_cottongen_reftransV1_0098020 vs. ExPASy Swiss-Prot
Match: PARNL_ARATH (Poly(A)-specific ribonuclease PARN-like OS=Arabidopsis thaliana GN=At3g25430 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.830e-31
Identity = 85/281 (30.25%), Postives = 139/281 (49.47%), Query Frame = 3

Query:  174 FPLKHVTRSNFESALVELRSHVRAADFVAIDMEMTGVTSAPWRESFEFDRFDIRYLKVKDSAEKFAVLQFGVCPFRWDSLKQSFIAHPHNFFVFARQEIPLDRTSYEFLCQTTSMDFLAKYQFDFNACIHEGISYLSRGQEDEARKRLISPKGDQLIHPSHNLRETTDLPLVRVADVLFTERMKKRLGEWRDDLLQNRVGGPQEEKVPDDLNQQFRTVF-----FKMRPALSLDGFTSHQLSLIRMVTRKHFKDLTYVCFNGESTSEELV--VYTDSESDK 995
            + +K V +SNF   L E+R+ + ++DF+A+ ++ TG  +A W      D     YLK K +AE++ +LQF +CPF     K     HP+NF +F R E+     SY F CQ + +  +A+  FDFN CI+EGISYLSR QE  ++    +P    ++  S  +  +       VAD +F  R++ R+  WR   + +       +   DDL    R +      +  R  L++D  +  Q+ LI  +  +   D+  +    +S   + V  V+  S+ DK
Sbjct:   24 WSVKQVKKSNFHVTLDEIRTSIDSSDFIALSLQNTGSYAAAWHRVSAIDTPQTSYLKAKYAAERYQILQFALCPFSLQGSK--LTVHPYNFHLFPRDELKCGMPSYSFSCQASRLTAMAREGFDFNICIYEGISYLSRAQESASKFLSENP----ILADSVTVSSSP----ATVADTVFVGRIRSRVKNWRQSCIDS-----GSKTGDDDLVSSLRRLVLGSEQYGSRLCLTIDVCSERQVQLILEMLTEFSDDVVPLLVASKSRGTQAVRTVFMSSKEDK 289

HSP 2 Score: 62.3882 bits (150), Expect = 1.536e-8
Identity = 24/56 (42.86%), Postives = 37/56 (66.07%), Query Frame = 1

Query: 1486 GFRHVIDLLSSENKLIVGHNCILDIAHVHSKFLAPLPSTAEEFVSCVNKYFPSIID 1653
            GFR V+D +SS  K +V  N + D   +H+KFL PLPS  ++F S ++  FP+++D
Sbjct:  309 GFREVVDFISSSQKPVVSQNYLSDFTSIHAKFLGPLPSNVDDFSSSLSSAFPNVVD 364

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BLAST of g.barbadense_cottongen_reftransV1_0098020 vs. ExPASy Swiss-Prot
Match: PARN_DANRE (Poly(A)-specific ribonuclease PARN OS=Danio rerio GN=parn PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 8.817e-23
Identity = 57/153 (37.25%), Postives = 90/153 (58.82%), Query Frame = 3

Query:  186 HVTRSNFESALVELRSHVRAADFVAIDMEMTGVTSAPWRESFE--FDRFDIRYLKVKDSAEKFAVLQFGVCPFRWDSLKQSFIAHPHNFFVFARQEIPLDRTS--YEFLCQTTSMDFLAKYQFDFNACIHEGISYLSRGQEDEARKRLISPKG 632
             VTR NF+  L E+ + V+ ADF++ID E TG++  P   +     D  + RY K++  +  F + QFGVC FR+D  + ++I    NF++F +   P  RTS   +F+CQ++S+DFLA   FDFN     GI YL++ +E + R++    +G
Sbjct:    2 EVTRQNFKEVLPEVCNAVQEADFISIDGEFTGISDGPSVSALTNGLDTPEERYTKLRKHSMNFLLFQFGVCTFRYDQNQSTYITKAFNFYIFPK---PFSRTSPDIKFICQSSSIDFLASQGFDFNKVFRSGIPYLNQEEECQLREQYEERRG 151

HSP 2 Score: 80.4925 bits (197), Expect = 4.289e-14
Identity = 74/272 (27.21%), Postives = 118/272 (43.38%), Query Frame = 1

Query: 1471 INAAVGFRHVIDLLSSENKLIVGHNCILDIAHVHSKFLAPLPSTAEEFVSCVNKYFPSIIDTKILLNA--------DYTLQRKMKRXXXXXXXXXXXXCPEIAHGFTRNVLSYEPCVKVEVHVDEMRSSNWNSGAKHEAGYDAFMTGCVFAQACSHLGIDFQLHSPSENLTQNEK-LQKHMNLLYLSWINGDIIDLRTGNRSAELSGSNMIRKPYRKILFKNILLLWGFPSKLKPSMIRDCICKTLGPTSVICTYGIDQTAVFVQFSKAELV 2259
            +N AVGF  VI  +S   KL+VGHN +LD+ H   +F  PLP   ++F       FP ++DTK++ +         + +L    K+         +  CPE                        ++S + ++   HEAGYDAF+TG  F    ++LG  F L  P  +++   K L+   N L+L      +ID+   N    +SG ++  K       ++ +L   FP + K S +   +    G   V     +D T+ FV  S+ E V
Sbjct:  262 LNDAVGFSRVIRAISKSGKLVVGHNMLLDVMHTIHQFCGPLPEELDDFKEVAMTVFPRLLDTKLMASTQPFKEIIHNTSLAELHKQLRQKPFRPPTTECPE-----------------------GLQSYDTSTEQLHEAGYDAFITGLCFISMANYLG-SF-LTPPKSHISARSKLLEPFYNKLFLM----RVIDIPYLN----MSGPDLQPK-------RDHVLYVTFPKEWKTSDLYQ-LFSAFGNIQVSW---VDDTSAFVSLSQTEQV 489

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BLAST of g.barbadense_cottongen_reftransV1_0098020 vs. ExPASy Swiss-Prot
Match: PARN_XENLA (Poly(A)-specific ribonuclease PARN OS=Xenopus laevis GN=parn PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 3.784e-21
Identity = 51/141 (36.17%), Postives = 84/141 (59.57%), Query Frame = 3

Query:  186 HVTRSNFESALVELRSHVRAADFVAIDMEMTGVTSAPWRESFE--FDRFDIRYLKVKDSAEKFAVLQFGVCPFRWDSLKQSFIAHPHNFFVFARQEIPLDRTS--YEFLCQTTSMDFLAKYQFDFNACIHEGISYLSRGQE 596
             +TRSNF+  L ++   +  ADF+AID E +G++  P   +    FD  + RY K+K  + +F + QFG+C F +D+ +  ++    NF++F +   P +R S   +F+CQ++S+DFLA   FDFN     GI YL++ +E
Sbjct:    2 EITRSNFKDTLPKVYKAIEEADFLAIDGEFSGISDGPSVSTLTNGFDTPEERYTKLKKHSMEFLLFQFGLCTFNYDNTEAKYLMKSFNFYIFPK---PFNRNSPDKKFVCQSSSIDFLANQGFDFNKVFRNGIPYLNQEEE 139

HSP 2 Score: 76.6406 bits (187), Expect = 6.397e-13
Identity = 80/291 (27.49%), Postives = 128/291 (43.99%), Query Frame = 1

Query: 1429 EEVKTDHQRRAEMK--INAAVGFRHVIDLLSSENKLIVGHNCILDIAHVHSKFLAPLPSTAEEFVSCVNKYFPSIIDTKILLNAD-----------YTLQRKMKRXXXXXXXXXXXXCPEIAHGFTRNVLSYEPCVKVEVHVDEMRSSNWNSGAKHEAGYDAFMTGCVFAQACSHLGIDFQLHSPSENLTQNEKL-QKHMNLLYLSWINGDIIDLRTGNRSAELSGSNMIRKPYRKILFKNILLLWGFPSKLKPSMIRDCICKTLGPTSVICTYGIDQTAVFVQFSKAELV 2259
            E  + + Q++A+ +  ++ AVGF  +I  +SS  KL+VGHN +LD+ H   +F   LP    EF    N  FP ++DTK++ + +             L++++K +             + A GF                    +S N  S   HEAGYDA++TG  F    ++LG  F L  P + ++   K+ +   N L+L      I+D+   N    L G ++  +P R     N+L +  FP + K S +        G   V     ID T+ FV  S+ E V
Sbjct:  247 ERKRMEQQKQAKEREELDDAVGFSRIIQAISSSGKLVVGHNMLLDVMHTIHQFFCQLPDELNEFKEVTNCVFPRVLDTKLMASTNPFKEIIYNTSLAELEKRLKEAPFKPPKV------DSAEGF--------------------QSYNTASEQLHEAGYDAYITGLCFISMANYLG-SF-LSPPKDYVSCRSKIVRPFFNKLFLM----RIMDIPYLN----LEGPDL--QPKR----DNVLHV-TFPKEWKTSDLYQLFS-AFGNIQVSW---IDDTSAFVSLSQPEQV 490

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BLAST of g.barbadense_cottongen_reftransV1_0098020 vs. ExPASy Swiss-Prot
Match: PARN_HUMAN (Poly(A)-specific ribonuclease PARN OS=Homo sapiens GN=PARN PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 3.804e-21
Identity = 54/147 (36.73%), Postives = 86/147 (58.50%), Query Frame = 3

Query:  186 HVTRSNFESALVELRSHVRAADFVAIDMEMTGVTSAPWRESFE--FDRFDIRYLKVKDSAEKFAVLQFGVCPFRWDSLKQSFIAHPHNFFVFARQEIPLDRTS--YEFLCQTTSMDFLAKYQFDFNACIHEGISYLSRGQEDEARKR 614
             + RSNF+S L ++   +  ADF AID E +G++  P   +    FD  + RY K+K  +  F + QFG+C F++D     +I    NF+VF +   P +R+S   +F+CQ++S+DFLA   FDFN     GI YL++ +E + R++
Sbjct:    2 EIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHSMDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFPK---PFNRSSPDVKFVCQSSSIDFLASQGFDFNKVFRNGIPYLNQEEERQLREQ 145

HSP 2 Score: 73.559 bits (179), Expect = 5.068e-12
Identity = 77/291 (26.46%), Postives = 126/291 (43.30%), Query Frame = 1

Query: 1429 EEVKTDHQRRA--EMKINAAVGFRHVIDLLSSENKLIVGHNCILDIAHVHSKFLAPLPSTAEEFVSCVNKYFPSIIDTKILLNAD-----------YTLQRKMKRXXXXXXXXXXXXCPEIAHGFTRNVLSYEPCVKVEVHVDEMRSSNWNSGAKHEAGYDAFMTGCVFAQACSHLGIDFQLHSPSENLTQNEKL-QKHMNLLYLSWINGDIIDLRTGNRSAELSGSNMIRKPYRKILFKNILLLWGFPSKLKPSMIRDCICKTLGPTSVICTYGIDQTAVFVQFSKAELV 2259
            E  + + Q+ A  + ++N AVGF  VI  +++  KL++GHN +LD+ H   +F  PLP+   EF       FP ++DTK++ +               L++++K +  +          E A GF     SY+                  S   HEAGYDA++TG  F    ++LG  F L  P  +++   KL +   N L+L      ++D+   N    L G ++  K       ++ +L   FP + K S     + +       I    ID T+ FV  S+ E V
Sbjct:  248 ERKRREQQKHAKEQEELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFNPPKV------ESAEGFP----SYDTA----------------SEQLHEAGYDAYITGLCFISMANYLG-SF-LSPPKIHVSARSKLIEPFFNKLFLM----RVMDIPYLN----LEGPDLQPK-------RDHVLHVTFPKEWKTS----DLYQLFSAFGNIQISWIDDTSAFVSLSQPEQV 491

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0098020 vs. ExPASy Swiss-Prot
Match: PARN_BOVIN (Poly(A)-specific ribonuclease PARN OS=Bos taurus GN=PARN PE=1 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 4.474e-21
Identity = 54/147 (36.73%), Postives = 86/147 (58.50%), Query Frame = 3

Query:  186 HVTRSNFESALVELRSHVRAADFVAIDMEMTGVTSAPWRESFE--FDRFDIRYLKVKDSAEKFAVLQFGVCPFRWDSLKQSFIAHPHNFFVFARQEIPLDRTS--YEFLCQTTSMDFLAKYQFDFNACIHEGISYLSRGQEDEARKR 614
             + RSNF+S L ++   +  ADF AID E +G++  P   +    FD  + RY K+K  +  F + QFG+C F++D     +I    NF+VF +   P +R+S   +F+CQ++S+DFLA   FDFN     GI YL++ +E + R++
Sbjct:    2 EIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVTALTNGFDTPEERYQKLKKHSMDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFPK---PFNRSSPDVKFVCQSSSIDFLASQGFDFNKVFRNGIPYLNQEEERQLREQ 145

HSP 2 Score: 74.7146 bits (182), Expect = 2.235e-12
Identity = 77/291 (26.46%), Postives = 126/291 (43.30%), Query Frame = 1

Query: 1429 EEVKTDHQRRA--EMKINAAVGFRHVIDLLSSENKLIVGHNCILDIAHVHSKFLAPLPSTAEEFVSCVNKYFPSIIDTKILLNAD-----------YTLQRKMKRXXXXXXXXXXXXCPEIAHGFTRNVLSYEPCVKVEVHVDEMRSSNWNSGAKHEAGYDAFMTGCVFAQACSHLGIDFQLHSPSENLTQNEKL-QKHMNLLYLSWINGDIIDLRTGNRSAELSGSNMIRKPYRKILFKNILLLWGFPSKLKPSMIRDCICKTLGPTSVICTYGIDQTAVFVQFSKAELV 2259
            E  + + Q+ A  + ++N AVGF  VI  +++  KL++GHN +LD+ H   +F  PLP+   EF       FP ++DTK++ +               L++++K +  +          E A GF     SY+                  S   HEAGYDA++TG  F    ++LG  F L  P  +++   KL +   N L+L      ++D+   N    L G ++  K       ++ +L   FP + K S     + +       I    ID T+ FV  S+ E V
Sbjct:  248 ERKRREQQKHAKEQEELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLNEFKEMTTCVFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFNPPKV------ESAEGFP----SYDTA----------------SEQLHEAGYDAYITGLCFISMANYLG-SF-LSPPKSHVSARSKLIEPFFNKLFLM----RVMDIPYLN----LEGPDLQPK-------RDHVLHVTFPKEWKTS----DLYQLFSAFGNIQISWIDDTSAFVSLSQPEQV 491

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0098020 vs. ExPASy Swiss-Prot
Match: PARN_PONAB (Poly(A)-specific ribonuclease PARN OS=Pongo abelii GN=PARN PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 5.756e-20
Identity = 52/147 (35.37%), Postives = 84/147 (57.14%), Query Frame = 3

Query:  186 HVTRSNFESALVELRSHVRAADFVAIDMEMTGVTSAPWRESFE--FDRFDIRYLKVKDSAEKFAVLQFGVCPFRWDSLKQSFIAHPHNFFVFARQEIPLDRT--SYEFLCQTTSMDFLAKYQFDFNACIHEGISYLSRGQEDEARKR 614
             + RSNF+  L ++   +  ADF AID E +G++  P   +    FD  + RY K+K  +  F + QFG+C F++D     +I    NF+VF +   P +R+    +F+CQ++S+DFLA   FDFN     GI YL++ +E + R++
Sbjct:    2 EIIRSNFKCNLHKVYQAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHSMDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFPK---PFNRSPPDVKFVCQSSSIDFLASQGFDFNKVFRNGIPYLNQEEERQLREQ 145

HSP 2 Score: 73.559 bits (179), Expect = 5.112e-12
Identity = 78/291 (26.80%), Postives = 126/291 (43.30%), Query Frame = 1

Query: 1429 EEVKTDHQRRA--EMKINAAVGFRHVIDLLSSENKLIVGHNCILDIAHVHSKFLAPLPSTAEEFVSCVNKYFPSIIDTKILLNAD-----------YTLQRKMKRXXXXXXXXXXXXCPEIAHGFTRNVLSYEPCVKVEVHVDEMRSSNWNSGAKHEAGYDAFMTGCVFAQACSHLGIDFQLHSPSENLTQNEKL-QKHMNLLYLSWINGDIIDLRTGNRSAELSGSNMIRKPYRKILFKNILLLWGFPSKLKPSMIRDCICKTLGPTSVICTYGIDQTAVFVQFSKAELV 2259
            E  + + Q+ A  + ++N AVGF  VI  +++  KL++GHN +LD+ H   +F  PLP+   EF       FP ++DTK++ +               L++++K +  S          E A GF     SY+                  S   HEAGYDA++TG  F    ++LG  F L  P  +++   KL +   N L+L      ++D+   N    L G ++  K       ++ +L   FP + K S     + +       I    ID T+ FV  S+ E V
Sbjct:  248 ERKRREQQKHAKEQEELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFSPPKV------ESAEGFP----SYDTA----------------SEQLHEAGYDAYITGLCFISMANYLG-SF-LSPPKIHVSARSKLIEPFFNKLFLM----RVMDIPYLN----LEGPDLQPK-------RDHVLHVTFPKEWKTS----DLYQLFSAFGNIQISWIDDTSAFVSLSQPEQV 491

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0098020 vs. ExPASy Swiss-Prot
Match: PARN_MOUSE (Poly(A)-specific ribonuclease PARN OS=Mus musculus GN=Parn PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.019e-19
Identity = 52/148 (35.14%), Postives = 83/148 (56.08%), Query Frame = 3

Query:  186 HVTRSNFESALVELRSHVRAADFVAIDMEMTGVTSAPWRESFE--FDRFDIRYLKVKDSAEKFAVLQFGVCPFRWDSLKQSFIAHPHNFFVFARQEIPLDRTS--YEFLCQTTSMDFLAKYQFDFNACIHEGISYLSRGQEDEARKRL 617
             + RSNF+  L ++   +  ADF AID E +G++  P   +    FD  + RY K+K  +  F + QFG+C F++D      +    NF+VF +   P  R+S   +F+CQ++S+DFLA   FDFN     GI YL++ +E + R++ 
Sbjct:    2 EIIRSNFKINLHKVYQAIEEADFFAIDGEFSGISDGPSVTALTSGFDTPEERYQKLKKHSMDFLLFQFGLCAFKYDHTDSKHVTKSFNFYVFPK---PFSRSSPDVKFVCQSSSIDFLASQGFDFNKVFCSGIPYLNQEEERQLREQF 146

HSP 2 Score: 70.8626 bits (172), Expect = 4.084e-11
Identity = 73/280 (26.07%), Postives = 117/280 (41.79%), Query Frame = 1

Query: 1456 RAEMKINAAVGFRHVIDLLSSENKLIVGHNCILDIAHVHSKFLAPLPSTAEEFVSCVNKYFPSIIDTKILLNAD-----------YTLQRKMKRXXXXXXXXXXXXCPEIAHGFTRNVLSYEPCVKVEVHVDEMRSSNWNSGAKHEAGYDAFMTGCVFAQACSHLGIDFQLHSPSENLTQNEKL-QKHMNLLYLSWINGDIIDLRTGNRSAELSGSNMIRKPYRKILFKNILLLWGFPSKLKPSMIRDCICKTLGPTSVICTYGIDQTAVFVQFSKAELV 2259
            + + ++N AVGF  VI  +++  KL+VGHN +LD+ H   +F  PLP+   EF       FP ++DTK++ +               L++++K +             E A GF                     S +  S   HEAGYDA++TG  F    ++LG    L  P   ++   KL +   N L+L      ++D+   N    L G ++  K       ++ +L   FP + K S     + +       I    ID T+ FV  S+ E V
Sbjct:  252 KEQEELNDAVGFSRVIHAIANSGKLVVGHNMLLDVMHTIHQFYCPLPADLNEFKEMAICVFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFDPPKV------ESAEGFP--------------------SYDTASEQLHEAGYDAYITGLCFISMANYLGS--LLSPPKMCVSARSKLIEPFFNKLFLM----RVMDIPYLN----LEGPDLQPK-------RDHVLHVTFPKEWKTS----DLYQLFSAFGNIQISWIDDTSAFVSLSQPEQV 484

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0098020 vs. ExPASy Swiss-Prot
Match: PNDC1_PONAB (Poly(A)-specific ribonuclease PARN-like domain-containing protein 1 OS=Pongo abelii GN=PNLDC1 PE=2 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 3.375e-8
Identity = 44/155 (28.39%), Postives = 68/155 (43.87%), Query Frame = 1

Query: 1477 AAVGFRHVIDLLSSENKLIVGHNCILDIAHVHSKFLAPLPSTAEEFVSCVNKYFPSIIDTKILLN---ADYTLQR-----KMKRXXXXXXXXXXXXCPEIAHGFTRNVLSYEPCVKVEVHVDEMRSSNWNSGAKHEAGYDAFMTGCVFAQACSHL 1917
            +A GF     +L    K +VGHN ++D+ H+H KF  PLP + ++F   ++  FP +IDTK +      +    R     K+     S  +      PEI H             + E +V+        +   HEA YDAF+ G V  +  +HL
Sbjct:  234 SARGFSAFFQMLVKAQKPLVGHNMMMDLLHLHEKFFRPLPESYDQFKQNIHSLFPVLIDTKSVTKDIWKEMNFPRVSNLSKVYEVLNSDLNPTKNSGPEIVHA-----------SRCEKYVE--------TKCPHEAAYDAFLCGSVLLKV-AHL 368

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0098020 vs. ExPASy Swiss-Prot
Match: YGS9_SCHPO (Uncharacterized protein C29A10.09c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC29A10.09c PE=3 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 5.606e-8
Identity = 42/136 (30.88%), Postives = 69/136 (50.74%), Query Frame = 3

Query:  201 NFESALVELRSHVRAADFVAIDMEMTGVTSAPWRESFEFDRFDI---RYLKVKDSAEKFAVLQFGVC-PFRWDSLKQSFIAHPHNFFVFARQEIPLDRTSYEFLCQTTSMDFLAKYQFDFNACIHEGISYLSRGQE 596
            NF   L EL  HV +A +V+ID E +G+        F  +  +    RY  ++ S+ ++ +LQ G+   +  ++ K S I    N     + E+ L R   +F  + +S+ FL +  FDFN  + EG+ YLSR +E
Sbjct:    7 NFLETLKELEKHVDSAHYVSIDCEFSGLL-----RDFNLNNKNTLQDRYELLRKSSIRYTILQIGITFIYLQNNGKSSCIPVNINVSPLVKDELHLKR---DFCSEASSIKFLIQQGFDFNKQLTEGVPYLSRIEE 134

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0098020 vs. ExPASy TrEMBL
Match: A0A0B2RIN0_GLYSO (Poly(A)-specific ribonuclease PARN OS=Glycine soja GN=glysoja_022537 PE=4 SV=1)

HSP 1 Score: 437.573 bits (1124), Expect = 9.121e-134
Identity = 228/392 (58.16%), Postives = 287/392 (73.21%), Query Frame = 1

Query: 1429 EEVKTDHQRRAEMKINAAVGFRHVIDLLSSENKLIVGHNCILDIAHVHSKFLAPLPSTAEEFVSCVNKYFPSIIDTKILLNADYTLQRKMKRXXXXXXXXXXXXCPEIAHGFTRNVLSYEPCVKVEVHVDEMRSSNWNSGAKHEAGYDAFMTGCVFAQACSHLGIDFQLHSPSENLTQNEKLQKHMNLLYLSWINGDIIDLRTGNRSAELSGSNMIRKPYRKILFKNILLLWGFPSKLKPSMIRDCICKTLGPTSVICTYGIDQTAVFVQFSKAELVSDFLNLKETLEQSNDAISHLHPLSQLLEGGNTRAASYETYKEICASPISKVLFADQAEAVGIKWKTELL-----PSDKEESHDNTRSHLESAMDSPQAVEKSKSRNTEDVVNDSS 2589
            ++VK ++ R  EMKI AAVGFRHVIDLLSSE KLIVG+NC LDIAHV+SKF+ PLP T EEFV+ VNK FP I+DTKILL+ +   Q KMKRS  SL+SAF+  CP+IA G     L     VKV V VD+ RS +W+ G KHEAGYDAFMTGC+FAQ CS LGIDF+LH  S+ L  NEKLQK++N LYLSW+  DIIDL TGN+ A+ S S+ + K Y KI+F+NI+++WGF SKLK + IR+CI K  GPTSV+  + +D TA FVQFSK ELVSDFL +K++LE+S  AIS LHPLS+LLEGGNT  A+Y+TY+EIC S +S+ LFADQAEAVGIKWKT+L         KE  + + + ++ +AM +   VE++K    + + N  S
Sbjct:  528 KKVKEENHRAEEMKIQAAVGFRHVIDLLSSEQKLIVGYNCFLDIAHVYSKFIGPLPGTPEEFVASVNKCFPHIVDTKILLSTNLMFQEKMKRSRKSLASAFTSFCPQIAAGSRSTDLGSLSHVKVNVEVDDSRSCSWSPGGKHEAGYDAFMTGCIFAQLCSDLGIDFKLHDSSKQLALNEKLQKYVNRLYLSWMQRDIIDLNTGNKVADSSLSHSLTKRYPKIMFENIVIIWGFSSKLKANEIRECISKVFGPTSVVSVFHLDATAAFVQFSKTELVSDFLLVKDSLERSGGAISVLHPLSKLLEGGNTCGANYDTYREICGSSLSEGLFADQAEAVGIKWKTKLTEYKVASRGKEHENPSVQDNVNTAMKN---VERAKPNTIDQLGNAPS 916

HSP 2 Score: 196.823 bits (499), Expect = 1.570e-48
Identity = 105/195 (53.85%), Postives = 133/195 (68.21%), Query Frame = 3

Query:  432 HPHNFFVFARQEIPLDRTSYEFLCQTTSMDFLAKYQFDFNACIHEGISYLSRGQEDEARKRLISPKGDQLIHPSHNLRETTDLPLVRVADVLFTERMKKRLGEWRDDLLQNRVGGPQEEKVPDDLNQQFRTVFFKMRPALSLDGFTSHQLSLIRMVTRKHFKDLTYVCFNGE-STSEELVVYTDSESDKARLMVR 1013
            H HNF+VF RQE+       EFLCQTTSMDFLAKYQFDFNACIHEGISYLSR QE +A + L S   D        L++  D+PL+  AD+LFT RMK +  EWRD L Q +    Q + +  D   +F+  FF+M PAL L+GFTSHQL LI+++ RKHFKDL+YV  N E S S++LVVYTD + D+  L+++
Sbjct:  338 HGHNFYVFPRQELAGLGPCDEFLCQTTSMDFLAKYQFDFNACIHEGISYLSREQERKALRSLNSTY-DSEWSDIGKLKDVRDIPLLSAADILFTARMKNKFSEWRDGLFQEQNQEDQIQGISKD--SKFQVTFFEMHPALRLNGFTSHQLKLIQLLIRKHFKDLSYVSVNSEASGSQQLVVYTDLK-DELNLLLK 528

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0098020 vs. ExPASy TrEMBL
Match: V7BL00_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G058000g PE=4 SV=1)

HSP 1 Score: 428.713 bits (1101), Expect = 5.745e-133
Identity = 223/355 (62.82%), Postives = 275/355 (77.46%), Query Frame = 1

Query: 1399 DSSPLPGSM*EEVKTDHQRRAEMKINAAVGFRHVIDLLSSENKLIVGHNCILDIAHVHSKFLAPLPSTAEEFVSCVNKYFPSIIDTKILLNADYTLQRKMKRXXXXXXXXXXXXCPEIAHGFTRNVLSYEPCVKVEVHVDEMRSSNWNSGAKHEAGYDAFMTGCVFAQACSHLGIDFQLHSPSENLTQNEKLQKHMNLLYLSWINGDIIDLRTGNRSAELSGSNMIRKPYRKILFKNILLLWGFPSKLKPSMIRDCICKTLGPTSVICTYGIDQTAVFVQFSKAELVSDFLNLKETLEQSNDAISHLHPLSQLLEGGNTRAASYETYKEICASPISKVLFADQAEAVGIKWKTEL 2463
            DS     S+ ++VK ++    +MKI AAVG RHVIDLLSSE KLIVGHNC LD+AHV+SKF+ PLP T EEFV+ VNK FP I+DTKILLN ++ L  KMKRS  SL++AF+  CP+IA G T +       VKVEV VD++RSS+WN G KHEAGYDAFMTGC+FAQ CS LGID++LH  S+ L  +EKLQ ++N LYLSW++GDIIDL TGN+  + S S  +RK Y KILF+NI+++WGFPSKLK + +R+CI K  GPTSV+  + +D TAVFVQFSK ELVSDFL+LK TLE S+ A+  LHPLS+LLEGGNT AA+Y TYKEIC SP+S+ LFADQ +AVGIKWKT+L
Sbjct:  296 DSKDELNSLLKKVKEENHGAEKMKIQAAVGLRHVIDLLSSEQKLIVGHNCFLDLAHVYSKFIGPLPDTPEEFVTSVNKCFPHIVDTKILLNTNFMLHEKMKRSRKSLAAAFTSFCPQIAAGSTSSYPGSLSHVKVEVEVDDVRSSSWNPGGKHEAGYDAFMTGCIFAQLCSDLGIDYKLHDSSKQLALDEKLQNYVNRLYLSWMHGDIIDLSTGNKVGDSSPSYSLRKRYPKILFENIVIIWGFPSKLKANEVRECISKVFGPTSVVSVFHLDATAVFVQFSKTELVSDFLSLKNTLEGSDGALLVLHPLSKLLEGGNTCAANYGTYKEICGSPLSECLFADQVKAVGIKWKTKL 650

HSP 2 Score: 328.946 bits (842), Expect = 1.560e-95
Identity = 172/301 (57.14%), Postives = 218/301 (72.43%), Query Frame = 3

Query:  126 LSRALSRAFSDTPSPT------FPLKHVTRSNFESALVELRSHVRAADFVAIDMEMTGVTSAPWRESFEFDRFDIRYLKVKDSAEKFAVLQFGVCPFRWDSLKQSFIAHPHNFFVFARQEIPLDRTSYEFLCQTTSMDFLAKYQFDFNACIHEGISYLSRGQEDEARKRLISPKGDQLIHPSHNLRETTDLPLVRVADVLFTERMKKRLGEWRDDLLQNRVGGPQEEKVPDDLNQQFRTVFFKMRPALSLDGFTSHQLSLIRMVTRKHFKDLTYVCFNGESTS-EELVVYTDSESDKARLM 1007
            LSRA++RA    P+ T      FP K VT +NFE +L ELR HVR++DFVAID+EM+G+TSAPWRES EFDR D+RYLKV+DSA KFAV+QFGVCPFRWDS   SF+A+PH+F+VF RQE        EFL QTTSMDFLAKYQFDFNACIHEGISYLSR QE +A + L S   D        L++  D+PL+  AD+LFT RMK +  EWRD LL  +    +++   D  + +F+ +FF+M PAL L+GFTSHQL LI++V RKHFKDL+YV  N E+++ ++LVVYTDS+ +   L+
Sbjct:   10 LSRAVARAL--CPATTTQCDSAFPSKTVTTANFEPSLAELRRHVRSSDFVAIDLEMSGITSAPWRESLEFDRSDVRYLKVRDSATKFAVVQFGVCPFRWDSSNNSFVAYPHSFYVFPRQEHAGLGPCDEFLWQTTSMDFLAKYQFDFNACIHEGISYLSREQERKALRSLNSTY-DSEWSDICKLKDVRDMPLLSAADILFTARMKNKFREWRDGLLHEQ--NLEDQIQGDTGDSKFQEMFFEMHPALRLNGFTSHQLKLIQLVIRKHFKDLSYVSVNSEASNLQQLVVYTDSKDELNSLL 305

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0098020 vs. ExPASy TrEMBL
Match: M1C0A3_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400022169 PE=4 SV=1)

HSP 1 Score: 422.165 bits (1084), Expect = 6.774e-133
Identity = 207/343 (60.35%), Postives = 264/343 (76.97%), Query Frame = 1

Query: 1429 EEVKTDHQRRAEMKINAAVGFRHVIDLLSSENKLIVGHNCILDIAHVHSKFLAPLPSTAEEFVSCVNKYFPSIIDTKILLNADYTLQRKMKRXXXXXXXXXXXXCPEIAHGFTRNVLSYEPCVKVEVHVDEMRSSNWNSGAKHEAGYDAFMTGCVFAQACSHLGIDFQLHSPSENLTQNEKLQKHMNLLYLSWINGDIIDLRTGNRSAELSGSNMIRKPYRKILFKNILLLWGFPSKLKPSMIRDCICKTLGPTSVICTYGIDQTAVFVQFSKAELVSDFLNLKETLEQSNDAISHLHPLSQLLEGGNTRAASYETYKEICASPISKVLFADQAEAVGIKWKT 2457
            +EVK   ++ AEMK+ +AVGFRHVIDLLSSE KLIVGHNC LD+AH++SKF+ PLPSTAE++VS + K FP+I+DTKILLNA+   ++ + +S+TSLS AF  +CP IA G   + L+  PCV+VEV VDE RSSNWNSGAKHEAGYDAFMTGC+FAQAC+HLGIDF LH    +L +  KLQ ++N LYLSW++G++IDL +G  + + S S+ ++  Y+ I F +I+LLWG PSKLK   IR  I +  GP SV   Y +D++AVF+QFSK ELVS FL LKETL +++D IS LHPLS +L G NT AA+Y+ Y++IC+S ISK LFADQAEAVGIK KT
Sbjct:  128 KEVKDGLRKEAEMKVESAVGFRHVIDLLSSERKLIVGHNCFLDVAHMYSKFIGPLPSTAEDYVSSLQKLFPTIVDTKILLNANGVFRQTLNKSNTSLSRAFVSICPHIALGIKTSSLADRPCVEVEVQVDEKRSSNWNSGAKHEAGYDAFMTGCIFAQACNHLGIDFTLHVLGGDLAKETKLQNYINRLYLSWVSGNVIDLSSGKCTPDSSASSNLKSRYQDISFPSIILLWGLPSKLKAREIRAYIAQAFGPNSVSSVYHLDESAVFIQFSKPELVSKFLELKETLSRNSDPISVLHPLSNILNGENTHAATYDVYQQICSSSISKKLFADQAEAVGIKHKT 470

HSP 2 Score: 123.25 bits (308), Expect = 4.209e-26
Identity = 63/127 (49.61%), Postives = 83/127 (65.35%), Query Frame = 3

Query:  657 NLRETTDLPLVRVADVLFTERMKKRLGEWRDDLLQNRVGGPQEEKVPDDLNQQFRTVFFKMRPALSLDGFTSHQLSLIRMVTRKHFKDLTYVCFNGESTS-EELVVYTDSESDKARLMVRHNTSVRK 1034
             L E  D PLVR+ADVLF ERMK  + EWRD LL       + +++  D +Q+F+ VFFK RP L+L  FTS QL +I+ VT+KHFKDL Y+   GE+TS ++L+VYTDS  D+  LM      +RK
Sbjct:   10 GLSEDADFPLVRMADVLFAERMKSTIREWRDSLLSKGSCSSEIKQISTDPSQRFQMVFFKTRPGLALSDFTSRQLRVIKAVTKKHFKDLAYIRVAGEATSPQQLIVYTDSNYDRDLLMKEVKDGLRK 136

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0098020 vs. ExPASy TrEMBL
Match: M1C0A5_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400022169 PE=4 SV=1)

HSP 1 Score: 412.149 bits (1058), Expect = 6.537e-131
Identity = 202/331 (61.03%), Postives = 256/331 (77.34%), Query Frame = 1

Query: 1465 MKINAAVGFRHVIDLLSSENKLIVGHNCILDIAHVHSKFLAPLPSTAEEFVSCVNKYFPSIIDTKILLNADYTLQRKMKRXXXXXXXXXXXXCPEIAHGFTRNVLSYEPCVKVEVHVDEMRSSNWNSGAKHEAGYDAFMTGCVFAQACSHLGIDFQLHSPSENLTQNEKLQKHMNLLYLSWINGDIIDLRTGNRSAELSGSNMIRKPYRKILFKNILLLWGFPSKLKPSMIRDCICKTLGPTSVICTYGIDQTAVFVQFSKAELVSDFLNLKETLEQSNDAISHLHPLSQLLEGGNTRAASYETYKEICASPISKVLFADQAEAVGIKWKT 2457
            MK+ +AVGFRHVIDLLSSE KLIVGHNC LD+AH++SKF+ PLPSTAE++VS + K FP+I+DTKILLNA+   ++ + +S+TSLS AF  +CP IA G   + L+  PCV+VEV VDE RSSNWNSGAKHEAGYDAFMTGC+FAQAC+HLGIDF LH    +L +  KLQ ++N LYLSW++G++IDL +G  + + S S+ ++  Y+ I F +I+LLWG PSKLK   IR  I +  GP SV   Y +D++AVF+QFSK ELVS FL LKETL +++D IS LHPLS +L G NT AA+Y+ Y++IC+S ISK LFADQAEAVGIK KT
Sbjct:    1 MKVESAVGFRHVIDLLSSERKLIVGHNCFLDVAHMYSKFIGPLPSTAEDYVSSLQKLFPTIVDTKILLNANGVFRQTLNKSNTSLSRAFVSICPHIALGIKTSSLADRPCVEVEVQVDEKRSSNWNSGAKHEAGYDAFMTGCIFAQACNHLGIDFTLHVLGGDLAKETKLQNYINRLYLSWVSGNVIDLSSGKCTPDSSASSNLKSRYQDISFPSIILLWGLPSKLKAREIRAYIAQAFGPNSVSSVYHLDESAVFIQFSKPELVSKFLELKETLSRNSDPISVLHPLSNILNGENTHAATYDVYQQICSSSISKKLFADQAEAVGIKHKT 331

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0098020 vs. ExPASy TrEMBL
Match: M1C0A1_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400022169 PE=4 SV=1)

HSP 1 Score: 421.009 bits (1081), Expect = 5.646e-130
Identity = 207/343 (60.35%), Postives = 264/343 (76.97%), Query Frame = 1

Query: 1429 EEVKTDHQRRAEMKINAAVGFRHVIDLLSSENKLIVGHNCILDIAHVHSKFLAPLPSTAEEFVSCVNKYFPSIIDTKILLNADYTLQRKMKRXXXXXXXXXXXXCPEIAHGFTRNVLSYEPCVKVEVHVDEMRSSNWNSGAKHEAGYDAFMTGCVFAQACSHLGIDFQLHSPSENLTQNEKLQKHMNLLYLSWINGDIIDLRTGNRSAELSGSNMIRKPYRKILFKNILLLWGFPSKLKPSMIRDCICKTLGPTSVICTYGIDQTAVFVQFSKAELVSDFLNLKETLEQSNDAISHLHPLSQLLEGGNTRAASYETYKEICASPISKVLFADQAEAVGIKWKT 2457
            +EVK   ++ AEMK+ +AVGFRHVIDLLSSE KLIVGHNC LD+AH++SKF+ PLPSTAE++VS + K FP+I+DTKILLNA+   ++ + +S+TSLS AF  +CP IA G   + L+  PCV+VEV VDE RSSNWNSGAKHEAGYDAFMTGC+FAQAC+HLGIDF LH    +L +  KLQ ++N LYLSW++G++IDL +G  + + S S+ ++  Y+ I F +I+LLWG PSKLK   IR  I +  GP SV   Y +D++AVF+QFSK ELVS FL LKETL +++D IS LHPLS +L G NT AA+Y+ Y++IC+S ISK LFADQAEAVGIK KT
Sbjct:  316 KEVKDGLRKEAEMKVESAVGFRHVIDLLSSERKLIVGHNCFLDVAHMYSKFIGPLPSTAEDYVSSLQKLFPTIVDTKILLNANGVFRQTLNKSNTSLSRAFVSICPHIALGIKTSSLADRPCVEVEVQVDEKRSSNWNSGAKHEAGYDAFMTGCIFAQACNHLGIDFTLHVLGGDLAKETKLQNYINRLYLSWVSGNVIDLSSGKCTPDSSASSNLKSRYQDISFPSIILLWGLPSKLKAREIRAYIAQAFGPNSVSSVYHLDESAVFIQFSKPELVSKFLELKETLSRNSDPISVLHPLSNILNGENTHAATYDVYQQICSSSISKKLFADQAEAVGIKHKT 658

HSP 2 Score: 363.614 bits (932), Expect = 2.265e-108
Identity = 178/288 (61.81%), Postives = 216/288 (75.00%), Query Frame = 3

Query:  174 FPLKHVTRSNFESALVELRSHVRAADFVAIDMEMTGVTSAPWRESFEFDRFDIRYLKVKDSAEKFAVLQFGVCPFRWDSLKQSFIAHPHNFFVFARQEIPLDRTSYEFLCQTTSMDFLAKYQFDFNACIHEGISYLSRGQEDEARKRLISPKGDQLIHPSHNLRETTDLPLVRVADVLFTERMKKRLGEWRDDLLQNRVGGPQEEKVPDDLNQQFRTVFFKMRPALSLDGFTSHQLSLIRMVTRKHFKDLTYVCFNGESTS-EELVVYTDSESDKARLMVRHNTSVRK 1034
            F +K+VT+SNFESAL +LR  +R ADFVA+D+EMTGVTSAPWRESF++DR+DI YLKVKDSAEKFAV+QFGVCPFRWDS KQSFIAHPHNF++F RQEIP    S EFLCQTTS+DFLAKYQFDFN C+ EGISYLSR QE EA +R+ S   D+       L E  D PLVR+ADVLF ERMK  + EWRD LL       + +++  D +Q+F+ VFFK RP L+L  FTS QL +I+ VT+KHFKDL Y+   GE+TS ++L+VYTDS  D+  LM      +RK
Sbjct:   37 FDIKNVTKSNFESALKDLRGLLRDADFVAVDLEMTGVTSAPWRESFDYDRYDISYLKVKDSAEKFAVVQFGVCPFRWDSHKQSFIAHPHNFYIFPRQEIPGSNQSREFLCQTTSLDFLAKYQFDFNLCVREGISYLSRSQEKEALERISSIYMDESSDSVFGLSEDADFPLVRMADVLFAERMKSTIREWRDSLLSKGSCSSEIKQISTDPSQRFQMVFFKTRPGLALSDFTSRQLRVIKAVTKKHFKDLAYIRVAGEATSPQQLIVYTDSNYDRDLLMKEVKDGLRK 324

The following BLAST results are available for this feature:

BLAST of g.barbadense_cottongen_reftransV1_0098020 vs. ExPASy Swiss-Prot
BLAST of g.barbadense_cottongen_reftransV1_0098020 vs. ExPASy TrEMBL

BLAST of g.barbadense_cottongen_reftransV1_0098020 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 11


Match Name	E-value	Identity	Description
PARN_ARATH	9.001e-121	57.73	Poly(A)-specific ribonuclease PARN OS=Arabidopsis ...	[more]
PARNL_ARATH	1.830e-31	30.25	Poly(A)-specific ribonuclease PARN-like OS=Arabido...	[more]
PARN_DANRE	8.817e-23	37.25	Poly(A)-specific ribonuclease PARN OS=Danio rerio ...	[more]
PARN_XENLA	3.784e-21	36.17	Poly(A)-specific ribonuclease PARN OS=Xenopus laev...	[more]
PARN_HUMAN	3.804e-21	36.73	Poly(A)-specific ribonuclease PARN OS=Homo sapiens...	[more]
PARN_BOVIN	4.474e-21	36.73	Poly(A)-specific ribonuclease PARN OS=Bos taurus G...	[more]
PARN_PONAB	5.756e-20	35.37	Poly(A)-specific ribonuclease PARN OS=Pongo abelii...	[more]
PARN_MOUSE	6.019e-19	35.14	Poly(A)-specific ribonuclease PARN OS=Mus musculus...	[more]
PNDC1_PONAB	3.375e-8	28.39	Poly(A)-specific ribonuclease PARN-like domain-con...	[more]
YGS9_SCHPO	5.606e-8	30.88	Uncharacterized protein C29A10.09c OS=Schizosaccha...	[more]

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BLAST of g.barbadense_cottongen_reftransV1_0098020 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0B2RIN0_GLYSO	9.121e-134	58.16	Poly(A)-specific ribonuclease PARN OS=Glycine soja...	[more]
V7BL00_PHAVU	5.745e-133	62.82	Uncharacterized protein OS=Phaseolus vulgaris GN=P...	[more]
M1C0A3_SOLTU	6.774e-133	60.35	Uncharacterized protein OS=Solanum tuberosum GN=PG...	[more]
M1C0A5_SOLTU	6.537e-131	61.03	Uncharacterized protein OS=Solanum tuberosum GN=PG...	[more]
M1C0A1_SOLTU	5.646e-130	60.35	Uncharacterized protein OS=Solanum tuberosum GN=PG...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006941	Ribonuclease CAF1	PFAM	PF04857	CAF1	coord: 2..144 e-value: 2.5E-35 score: 122.1
IPR012337	Ribonuclease H-like domain	GENE3D	3.30.420.10		coord: 9..152 e-value: 1.5E-16 score: 59.7
IPR012337	Ribonuclease H-like domain	SUPERFAMILY	53098	Ribonuclease H-like	coord: 6..92 coord: 123..154
None	No IPR available	PANTHER	PTHR15092:SF22	TARGET OF EGR1 PROTEIN 1	coord: 1..334
None	No IPR available	PANTHER	PTHR15092	POLY A -SPECIFIC RIBONUCLEASE/TARGET OF EGR1, MEMBER 1	coord: 1..334

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.barbadense_cottongen_reftransV1_0098020 ID=g.barbadense_cottongen_reftransV1_0098020; Name=g.barbadense_cottongen_reftransV1_0098020; organism=Gossypium barbadense; type=contig; length=2872bp
GCAATAACTCAAAACCGAATCTCCTTTGTCCGCTGCCCTTCTAAAATCCC
ACCCGCCGTCGTCGCTGCTGCCACCGTCATGCTCTCATGAACACCACAAG
ACACTGGCCCCAGAGGGCCTTTATCCTCTCACGTGCGCTATCACGTGCCT
TTTCCGACACCCCTTCCCCGACGTTCCCTCTGAAGCACGTGACACGATCC
AACTTCGAATCGGCCCTCGTTGAACTCCGTTCGCACGTACGAGCTGCCGA
TTTCGTGGCCATCGACATGGAAATGACGGGGGTAACTAGCGCGCCCTGGA
GGGAATCTTTCGAGTTTGATCGGTTTGATATTCGGTATCTCAAAGTCAAA
GATTCCGCTGAGAAATTCGCTGTTCTTCAGTTCGGCGTTTGCCCTTTTCG
TTGGGACTCACTTAAGCAGTCGTTCATTGCTCACCCGCACAATTTCTTTG
TATTTGCTCGTCAAGAAATTCCACTTGATAGGACCTCTTATGAATTCCTT
TGCCAAACGACATCAATGGATTTTTTGGCTAAATATCAGTTTGATTTCAA
CGCTTGCATACATGAAGGTATATCTTACTTGTCCAGAGGACAAGAAGATG
AGGCTCGTAAAAGATTAATATCACCTAAAGGAGATCAGTTAATACATCCG
TCTCATAATTTAAGAGAAACTACGGACTTACCGTTGGTCCGAGTGGCTGA
TGTTCTCTTCACTGAAAGAATGAAGAAAAGATTGGGTGAATGGCGTGATG
ATTTATTACAGAATAGGGTAGGAGGGCCTCAAGAAGAAAAGGTTCCTGAT
GACTTAAATCAACAATTTCGGACAGTTTTCTTCAAGATGCGTCCTGCTCT
GAGTTTGGATGGATTCACTTCTCACCAACTTAGTCTGATACGAATGGTCA
CAAGGAAGCATTTCAAAGATCTTACTTATGTTTGTTTTAACGGTGAAAGT
ACTTCAGAAGAGTTAGTAGTTTATACAGACTCAGAGAGTGATAAAGCGAG
ACTTATGGTAAGACACAATACTTCTGTGAGGAAGATCTGTCTGTTTGTTC
CATATTTAGATGATCAGCATTCAACTGTTTTTAATACAAAACACTGTTTA
TATGTTCATGTTAGAAATCTTTTAAAGCATAGAACTGTAGACGCTTTTCT
GTTTGTTTTCTTCCCTAGGTAGAATGGTTCCTTATTTGGCTGGGAAATGC
TTTCTAAACATTTAGCATCATGAGTGGAGTAAACGAAGAAAAAAAAAGAA
GAGAGAGAGAGTTTCAATGCATTGATGCTGGTATGATGGGTATATTATGC
ACAAACCTGACAGTGCCGGAATTATATACTGGGGCTATGTAAATGGAAGT
ATGAATCTGACAGCTGCATTTGGTGTGGTGTCTTTTGCATGTTGTGATGA
CTCTTCTCCTCTGCCTGGTTCTATGTAGGAGGAGGTGAAGACTGATCATC
AGAGAAGGGCAGAAATGAAGATCAATGCTGCAGTAGGGTTTCGTCATGTG
ATCGATCTCCTTTCTTCAGAAAATAAGTTGATTGTTGGTCACAATTGCAT
CCTGGATATTGCTCACGTACACAGCAAATTCCTAGCTCCTCTTCCTTCAA
CAGCTGAAGAATTTGTCTCCTGCGTGAACAAATACTTCCCAAGTATCATT
GACACCAAAATACTTTTGAATGCTGACTACACATTACAACGAAAGATGAA
GAGATCTAGCACATCATTATCCTCAGCATTTTCATTATTATGCCCAGAGA
TAGCTCACGGGTTTACACGTAATGTTCTGTCTTATGAGCCATGTGTTAAG
GTTGAGGTCCACGTGGATGAAATGAGGTCTTCTAATTGGAACTCTGGAGC
CAAGCATGAAGCTGGTTATGATGCTTTTATGACAGGCTGTGTGTTTGCCC
AGGCTTGCAGTCATCTAGGCATTGACTTTCAGCTTCATTCTCCTTCTGAA
AATCTGACCCAAAATGAAAAGCTGCAGAAGCACATGAACCTTCTATATCT
GAGTTGGATTAATGGAGACATTATTGATCTGAGGACTGGTAACCGGTCTG
CAGAGTTGTCAGGCTCTAATATGATCAGAAAGCCATATCGAAAGATTTTA
TTTAAGAACATCCTTTTACTCTGGGGATTCCCTTCAAAACTGAAGCCAAG
TATGATAAGAGATTGCATCTGCAAAACCCTTGGTCCTACCTCTGTTATTT
GTACATACGGTATAGATCAAACTGCAGTGTTTGTTCAGTTCAGCAAGGCA
GAGTTGGTATCAGACTTTTTGAATTTGAAGGAAACTCTAGAGCAAAGTAA
CGATGCAATTTCTCATTTGCATCCTCTTTCACAACTTCTGGAAGGTGGAA
ATACCCGTGCTGCTAGTTATGAAACTTATAAAGAGATCTGTGCATCACCT
ATCTCGAAAGTGTTGTTTGCAGATCAAGCAGAGGCTGTTGGCATCAAATG
GAAGACCGAATTGTTACCATCTGATAAAGAAGAGAGCCATGACAATACTC
GTTCCCATCTAGAAAGTGCAATGGATAGTCCACAGGCTGTTGAAAAATCC
AAGTCAAGGAACACCGAGGATGTAGTAAATGATTCATCGAACAAACGGTT
TTGTGACGATATCATTGATTCATTTCTTAAAGTTGAAAAGATAAGAAGAA
CCACTAATTTGTAACTCAAGCTTAAAGCTTAAAGGCAGTTTTGAGCTTTT
TTTCCACACTTTATTGTGAATCTGTATGACATTTAGAGTTCTTATACAAA
TATTAGGATTACTGAGTTGGAAATGAGGATCACATTTTGATGGCAACTTT
GAGGCCATCTTCTGTACATTAACAGTTTGCCTTTGATATAAATTAAAATG
CTGATTCAATTTTTTGTCACTG

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR006941	RNase_CAF1
IPR012337	RNaseH-like_sf

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

Search form

g.barbadense_cottongen_reftransV1_0098020, g.barbadense_cottongen_reftransV1_0098020 (contig) Gossypium barbadense

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