g.barbadense_cottongen_reftransV1_0097920, g.barbadense_cottongen_reftransV1_0097920 (contig) Gossypium barbadense
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0097920 vs. ExPASy Swiss-Prot
Match: RPB7_DICDI (DNA-directed RNA polymerase II subunit rpb7 OS=Dictyostelium discoideum GN=polr2g PE=3 SV=1) HSP 1 Score: 65.0846 bits (157), Expect = 1.160e-10 Identity = 43/135 (31.85%), Postives = 75/135 (55.56%), Query Frame = 3 Query: 1215 ATKDLGYFMAVTTLESIGEGRVRQNSGDVLFPVVFSGITFKMYRGEILQGVVHKILKHGVFLRCGPVQNIYLSHIKMPDYHYVPGENGI---FMNDKHSKIDKDVIVRFIVIGTKWMEAEREFQALVSLEGDYLG 1610 T G+ + +T+++ + +G+V ++SG V+F V + I FK ++GE+L +V K+ G F GP+ +I++S +P ++ + D SKI KD VR + GT+ ++A F A+ S+ DYLG Sbjct: 38 CTGRYGFIITITSVDFLSKGKVLESSGYVVFNVKYKAIIFKPFKGEVLDAIVTKVTNLGFFAEAGPL-SIFVSTQLIPSDMIFDAQSAVPCFVSEDGSSKISKDDEVRLQIKGTR-VDATEIF-AIGSIREDYLG 169
BLAST of g.barbadense_cottongen_reftransV1_0097920 vs. ExPASy Swiss-Prot
Match: RPB7_SCHPO (DNA-directed RNA polymerase II subunit rpb7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpb7 PE=1 SV=1) HSP 1 Score: 57.7658 bits (138), Expect = 2.733e-8 Identity = 37/129 (28.68%), Postives = 62/129 (48.06%), Query Frame = 3 Query: 1230 GYFMAV--TTLESIGEGRVRQNSGDVLFPVVFSGITFKMYRGEILQGVVHKILKHGVFLRCGPVQNIYLSHIKMPDYHYVPGENGIFMNDKHSKIDKDVIVRFIVIGTKWMEAEREFQALVSLEGDYLG 1610 GY + V + I +GRV G F V + + ++ +RGE++ +V + K G F GP+ SH+ PD + P N + + I+K VR ++GT+ E A+ +++ DYLG Sbjct: 44 GYIICVLDSNTIDIDKGRVVPGQGFAEFEVKYRAVLWRPFRGEVVDAIVTTVNKMGFFANIGPLNVFVSSHLVPPDMKFDPTANPPNYSGEDQVIEKGSNVRLKIVGTR--TDATEIFAIATMKEDYLG 170
BLAST of g.barbadense_cottongen_reftransV1_0097920 vs. ExPASy Swiss-Prot
Match: RPOE1_METJA (DNA-directed RNA polymerase subunit E' OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=rpoE1 PE=1 SV=1) HSP 1 Score: 55.4546 bits (132), Expect = 1.829e-7 Identity = 48/158 (30.38%), Postives = 83/158 (52.53%), Query Frame = 3 Query: 1155 GLMLKKAIVIRLMDEFACKKATKDLGYFMAVTTLESIGEGRVRQNSGDVLFPVVFSGITF--KMYRGEILQGVVHKILKHGVFLRCGPVQN-IYLSHIKMPDY-HYVPGENGIFMND--KHSKIDKDVIVRFIVIGTKWMEAEREFQALVSLEGDYLG 1610 G LK+ + LM+++ + KD+G+ +++ ++ IGEG+V G PVVF + + +MY E+++G V +++ G F+R GP+ I++S I M DY Y P I + K +I V R + I K E +R + +++ YLG Sbjct: 19 GKDLKETVKKILMEKYEGR-LDKDVGFVLSIVDVKDIGEGKVVHGDGSAYHPVVFETLVYIPEMY--ELIEGEVVDVVEFGSFVRLGPLDGLIHVSQI-MDDYVSYDPKREAIIGKETGKVLEIGDYVRARIVAISLK-AERKRGSKIALTMRQPYLG 171
BLAST of g.barbadense_cottongen_reftransV1_0097920 vs. ExPASy TrEMBL
Match: A0A067KVA5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10526 PE=4 SV=1) HSP 1 Score: 299.286 bits (765), Expect = 1.100e-93 Identity = 135/174 (77.59%), Postives = 168/174 (96.55%), Query Frame = 3 Query: 1098 LKVQMPWNVIIPADSLDAKGLMLKKAIVIRLMDEFACKKATKDLGYFMAVTTLESIGEGRVRQNSGDVLFPVVFSGITFKMYRGEILQGVVHKILKHGVFLRCGPVQNIYLSHIKMPDYHYVPGENGIFMNDKHSKIDKDVIVRFIVIGTKWMEAEREFQALVSLEGDYLGPVS 1619 +KVQ+PWNVIIPA++LDAKGLML+++I+IRL+++FA KKATKDLGY++AVTTLE IGEG+VRQ+SGDVLFPVVF+GITFK++RGEIL+GVVHK+LKHGVFLRCGP+++IYLS +KMPDYHYVPGEN +F+N+K SKI+K+ +VRFIV+GTKW+EAEREF+ALVSLEGDYLGPVS Sbjct: 3 IKVQLPWNVIIPAENLDAKGLMLQRSIIIRLLEDFAIKKATKDLGYYLAVTTLEKIGEGKVRQHSGDVLFPVVFNGITFKIFRGEILEGVVHKVLKHGVFLRCGPIEHIYLSCMKMPDYHYVPGENPVFLNEKTSKIEKETVVRFIVLGTKWLEAEREFRALVSLEGDYLGPVS 176
BLAST of g.barbadense_cottongen_reftransV1_0097920 vs. ExPASy TrEMBL
Match: A0A059B319_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H03255 PE=4 SV=1) HSP 1 Score: 300.827 bits (769), Expect = 1.496e-92 Identity = 141/177 (79.66%), Postives = 165/177 (93.22%), Query Frame = 3 Query: 1098 LKVQMPWNVIIPADSLDAKGLMLKKAIVIRLMDEFACKKATKDLGYFMAVTTLESIGEGRVRQNSGDVLFPVVFSGITFKMYRGEILQGVVHKILKHGVFLRCGPVQNIYLSHIKMPDYHYVPGENGIFMNDKHSKIDKDVIVRFIVIGTKWMEAEREFQALVSLEGDYLGPVS*IY 1628 LKVQ+PWNVII A+ LDAKGLML+++I+IRL+D+FACKKATKDLGYF AVTTL+SIGEG+VRQ+SGDVLFPVVFSGITFK++RGEIL GVVHK+LKHGVFLRCGPV+N+YLS++KM DY YVPGEN IF+NDK SKI KDV VRF+VIGTKW+E EREFQALVSLEGD+LGPVS ++ Sbjct: 3 LKVQLPWNVIISAEDLDAKGLMLQRSIIIRLLDDFACKKATKDLGYFSAVTTLDSIGEGKVRQHSGDVLFPVVFSGITFKLFRGEILDGVVHKVLKHGVFLRCGPVENVYLSNLKMADYKYVPGENPIFLNDKLSKIGKDVTVRFMVIGTKWLEVEREFQALVSLEGDFLGPVSYLW 179
BLAST of g.barbadense_cottongen_reftransV1_0097920 vs. ExPASy TrEMBL
Match: A5BM26_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043525 PE=4 SV=1) HSP 1 Score: 294.664 bits (753), Expect = 7.434e-92 Identity = 136/174 (78.16%), Postives = 163/174 (93.68%), Query Frame = 3 Query: 1098 LKVQMPWNVIIPADSLDAKGLMLKKAIVIRLMDEFACKKATKDLGYFMAVTTLESIGEGRVRQNSGDVLFPVVFSGITFKMYRGEILQGVVHKILKHGVFLRCGPVQNIYLSHIKMPDYHYVPGENGIFMNDKHSKIDKDVIVRFIVIGTKWMEAEREFQALVSLEGDYLGPVS 1619 LKVQ+PWNVIIPA+ LDAKGLML+++I+IRL+D F+ KKAT++LGYF+AVTTLE+IGEG+VRQ+SGDVLFPVVFS +TFK++RGEIL GVVHK+LKHGV LRCGPV+NIYLS KMPDY YVPGEN +F+N+K SKI+KDV+VRFIV+GTKW+EAEREFQALVSLEGDYLGP+S Sbjct: 3 LKVQLPWNVIIPAECLDAKGLMLQRSIIIRLLDAFSNKKATQELGYFLAVTTLENIGEGKVRQHSGDVLFPVVFSCVTFKLFRGEILDGVVHKVLKHGVILRCGPVENIYLSCQKMPDYRYVPGENPVFLNEKLSKIEKDVVVRFIVMGTKWLEAEREFQALVSLEGDYLGPLS 176
BLAST of g.barbadense_cottongen_reftransV1_0097920 vs. ExPASy TrEMBL
Match: A9PGH2_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1) HSP 1 Score: 294.278 bits (752), Expect = 1.010e-91 Identity = 134/174 (77.01%), Postives = 165/174 (94.83%), Query Frame = 3 Query: 1098 LKVQMPWNVIIPADSLDAKGLMLKKAIVIRLMDEFACKKATKDLGYFMAVTTLESIGEGRVRQNSGDVLFPVVFSGITFKMYRGEILQGVVHKILKHGVFLRCGPVQNIYLSHIKMPDYHYVPGENGIFMNDKHSKIDKDVIVRFIVIGTKWMEAEREFQALVSLEGDYLGPVS 1619 LKVQ+PWNVIIPA++LDAKGLML+++IV+ L+ +FA K+ATKDLGY++AV+TLESIGEG+VRQ++GDVLFPVVFSGITFK+++GEIL+GVVHK+LKHGV LRCGP++NIYLS +KM DY YVPGEN +F+NDK SKI+KDV+VRF+V+GTKW+EAEREFQALVSLEGDYLGPVS Sbjct: 3 LKVQLPWNVIIPAENLDAKGLMLQRSIVVCLLADFAKKRATKDLGYYLAVSTLESIGEGKVRQHTGDVLFPVVFSGITFKIFKGEILEGVVHKVLKHGVLLRCGPIENIYLSSMKMLDYRYVPGENPVFLNDKTSKIEKDVVVRFVVLGTKWLEAEREFQALVSLEGDYLGPVS 176
BLAST of g.barbadense_cottongen_reftransV1_0097920 vs. ExPASy TrEMBL
Match: F6HDY5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g04760 PE=4 SV=1) HSP 1 Score: 294.664 bits (753), Expect = 1.211e-91 Identity = 136/174 (78.16%), Postives = 163/174 (93.68%), Query Frame = 3 Query: 1098 LKVQMPWNVIIPADSLDAKGLMLKKAIVIRLMDEFACKKATKDLGYFMAVTTLESIGEGRVRQNSGDVLFPVVFSGITFKMYRGEILQGVVHKILKHGVFLRCGPVQNIYLSHIKMPDYHYVPGENGIFMNDKHSKIDKDVIVRFIVIGTKWMEAEREFQALVSLEGDYLGPVS 1619 LKVQ+PWNVIIPA+ LDAKGLML+++I+IRL+D F+ KKAT++LGYF+AVTTLE+IGEG+VRQ+SGDVLFPVVFS +TFK++RGEIL GVVHK+LKHGV LRCGPV+NIYLS KMPDY YVPGEN +F+N+K SKI+KDV+VRFIV+GTKW+EAEREFQALVSLEGDYLGP+S Sbjct: 20 LKVQLPWNVIIPAECLDAKGLMLQRSIIIRLLDAFSNKKATQELGYFLAVTTLENIGEGKVRQHSGDVLFPVVFSCVTFKLFRGEILDGVVHKVLKHGVILRCGPVENIYLSCQKMPDYRYVPGENPVFLNEKLSKIEKDVVVRFIVMGTKWLEAEREFQALVSLEGDYLGPLS 193
BLAST of g.barbadense_cottongen_reftransV1_0097920 vs. ExPASy TrEMBL
Match: A0A059B2R2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H03254 PE=4 SV=1) HSP 1 Score: 291.967 bits (746), Expect = 6.281e-91 Identity = 136/174 (78.16%), Postives = 157/174 (90.23%), Query Frame = 3 Query: 1098 LKVQMPWNVIIPADSLDAKGLMLKKAIVIRLMDEFACKKATKDLGYFMAVTTLESIGEGRVRQNSGDVLFPVVFSGITFKMYRGEILQGVVHKILKHGVFLRCGPVQNIYLSHIKMPDYHYVPGENGIFMNDKHSKIDKDVIVRFIVIGTKWMEAEREFQALVSLEGDYLGPVS 1619 LKVQ+PWNVII A+ LDAKGLML+++I IRL+D+FACKKATKDLGYF AVTTL+SIGEG+VRQ SGDVLFPVVFSGITFK+ RGEIL GVVHK+ KHGV LRCGPV N+YLS+ KMPDY YVPGEN +F+NDK SKI KDV+VRF+VIGTKW+E EREF+ LVSLEGD+LGP+S Sbjct: 3 LKVQLPWNVIISAEDLDAKGLMLQRSITIRLLDDFACKKATKDLGYFCAVTTLDSIGEGKVRQYSGDVLFPVVFSGITFKLLRGEILDGVVHKVFKHGVLLRCGPVDNVYLSNQKMPDYKYVPGENPVFLNDKLSKISKDVMVRFMVIGTKWLEVEREFRVLVSLEGDFLGPIS 176
BLAST of g.barbadense_cottongen_reftransV1_0097920 vs. ExPASy TrEMBL
Match: M5XNQ9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012282mg PE=4 SV=1) HSP 1 Score: 290.041 bits (741), Expect = 3.624e-90 Identity = 133/174 (76.44%), Postives = 158/174 (90.80%), Query Frame = 3 Query: 1098 LKVQMPWNVIIPADSLDAKGLMLKKAIVIRLMDEFACKKATKDLGYFMAVTTLESIGEGRVRQNSGDVLFPVVFSGITFKMYRGEILQGVVHKILKHGVFLRCGPVQNIYLSHIKMPDYHYVPGENGIFMNDKHSKIDKDVIVRFIVIGTKWMEAEREFQALVSLEGDYLGPVS 1619 LKVQ+PWNV+IPA+SLD KGLML+K+IV++L+DEFA +KATKDLGY +A+TTLESIGEGRVR+++GDVLFPVVFSG+TFK++RGEI +GVVHK+LKHGVFL CGPV+NIYLS +KMPDY YVPGEN +FMN K SKI+K VRFIVIGTKW+E+EREFQALV L DYLGPVS Sbjct: 3 LKVQLPWNVVIPAESLDIKGLMLQKSIVVQLLDEFASRKATKDLGYLLALTTLESIGEGRVREHTGDVLFPVVFSGVTFKLFRGEIAEGVVHKVLKHGVFLSCGPVENIYLSKLKMPDYDYVPGENPVFMNSKMSKIEKGFTVRFIVIGTKWLESEREFQALVGLHADYLGPVS 176
BLAST of g.barbadense_cottongen_reftransV1_0097920 vs. ExPASy TrEMBL
Match: V7BHY2_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G126700g PE=4 SV=1) HSP 1 Score: 290.041 bits (741), Expect = 4.189e-90 Identity = 133/174 (76.44%), Postives = 159/174 (91.38%), Query Frame = 3 Query: 1098 LKVQMPWNVIIPADSLDAKGLMLKKAIVIRLMDEFACKKATKDLGYFMAVTTLESIGEGRVRQNSGDVLFPVVFSGITFKMYRGEILQGVVHKILKHGVFLRCGPVQNIYLSHIKMPDYHYVPGENGIFMNDKHSKIDKDVIVRFIVIGTKWMEAEREFQALVSLEGDYLGPVS 1619 LKVQ+PWNVII A++L +GLML++ I+IRL+ +FA KKATKDLGYF+AVTTLE IGEG+VRQ++GDVLFPVVF+ ITFK+++GEIL+GVVHK+LKHGVF+RCGP++N+YLSH+KMPDY YVPGEN FMNDK SKI KDV VRF VIGTKWMEA+REFQALVSLEGDYLGP+S Sbjct: 3 LKVQLPWNVIIAAENLKPQGLMLQREIIIRLLGDFAMKKATKDLGYFLAVTTLEKIGEGKVRQHTGDVLFPVVFNAITFKIFKGEILEGVVHKVLKHGVFMRCGPIENVYLSHLKMPDYRYVPGENACFMNDKLSKIGKDVTVRFSVIGTKWMEADREFQALVSLEGDYLGPIS 176
BLAST of g.barbadense_cottongen_reftransV1_0097920 vs. ExPASy TrEMBL
Match: A0A0B2PVH1_GLYSO (DNA-directed RNA polymerase II subunit RPB7 OS=Glycine soja GN=glysoja_040435 PE=4 SV=1) HSP 1 Score: 287.345 bits (734), Expect = 5.021e-89 Identity = 132/174 (75.86%), Postives = 157/174 (90.23%), Query Frame = 3 Query: 1098 LKVQMPWNVIIPADSLDAKGLMLKKAIVIRLMDEFACKKATKDLGYFMAVTTLESIGEGRVRQNSGDVLFPVVFSGITFKMYRGEILQGVVHKILKHGVFLRCGPVQNIYLSHIKMPDYHYVPGENGIFMNDKHSKIDKDVIVRFIVIGTKWMEAEREFQALVSLEGDYLGPVS 1619 LKVQ+ WNVII A++L +GLML +AI++RL+ +FA KKATKDLGYF+AVTTLE IGEG+VRQ++GDVLFPVVF+ ITFK ++GEIL+GVVHK+LKHGVF+RCGP++N+YLS++KMPDY YVPGEN FMNDK SKI KDV VRF VIGTKWMEAEREFQALVSLEGDYLGP+S Sbjct: 3 LKVQLHWNVIIAAENLQPEGLMLHRAIIVRLLSDFAVKKATKDLGYFLAVTTLEKIGEGKVRQHTGDVLFPVVFNAITFKFFKGEILEGVVHKVLKHGVFMRCGPIENVYLSNLKMPDYRYVPGENACFMNDKMSKIGKDVTVRFSVIGTKWMEAEREFQALVSLEGDYLGPIS 176
BLAST of g.barbadense_cottongen_reftransV1_0097920 vs. ExPASy TrEMBL
Match: I1NI41_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 286.96 bits (733), Expect = 1.172e-88 Identity = 132/174 (75.86%), Postives = 157/174 (90.23%), Query Frame = 3 Query: 1098 LKVQMPWNVIIPADSLDAKGLMLKKAIVIRLMDEFACKKATKDLGYFMAVTTLESIGEGRVRQNSGDVLFPVVFSGITFKMYRGEILQGVVHKILKHGVFLRCGPVQNIYLSHIKMPDYHYVPGENGIFMNDKHSKIDKDVIVRFIVIGTKWMEAEREFQALVSLEGDYLGPVS 1619 LKVQ+ WNVII A++L +GLML +AI++RL+ +FA KKATKDLGYF+AVTTLE IGEG+VRQ++GDVLFPVVF+ ITFK ++GEIL+GVVHK+LKHGVF+RCGP++N+YLS++KMPDY YVPGEN FMNDK SKI KDV VRF VIGTKWMEAEREFQALVSLEGDYLGP+S Sbjct: 21 LKVQLHWNVIIAAENLQPEGLMLHRAIIVRLLSDFAVKKATKDLGYFLAVTTLEKIGEGKVRQHTGDVLFPVVFNVITFKFFKGEILEGVVHKVLKHGVFMRCGPIENVYLSNLKMPDYRYVPGENACFMNDKMSKIGKDVTVRFSVIGTKWMEAEREFQALVSLEGDYLGPIS 194 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0097920 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 13
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BLAST of g.barbadense_cottongen_reftransV1_0097920 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0097920 ID=g.barbadense_cottongen_reftransV1_0097920; Name=g.barbadense_cottongen_reftransV1_0097920; organism=Gossypium barbadense; type=contig; length=2035bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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