g.barbadense_cottongen_reftransV1_0097920, g.barbadense_cottongen_reftransV1_0097920 (contig) Gossypium barbadense
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0097920 vs. ExPASy Swiss-Prot
Match: RPB7_DICDI (DNA-directed RNA polymerase II subunit rpb7 OS=Dictyostelium discoideum GN=polr2g PE=3 SV=1) HSP 1 Score: 65.0846 bits (157), Expect = 1.160e-10 Identity = 43/135 (31.85%), Postives = 75/135 (55.56%), Query Frame = 3 Query: 1215 ATKDLGYFMAVTTLESIGEGRVRQNSGDVLFPVVFSGITFKMYRGEILQGVVHKILKHGVFLRCGPVQNIYLSHIKMPDYHYVPGENGI---FMNDKHSKIDKDVIVRFIVIGTKWMEAEREFQALVSLEGDYLG 1610 T G+ + +T+++ + +G+V ++SG V+F V + I FK ++GE+L +V K+ G F GP+ +I++S +P ++ + D SKI KD VR + GT+ ++A F A+ S+ DYLG Sbjct: 38 CTGRYGFIITITSVDFLSKGKVLESSGYVVFNVKYKAIIFKPFKGEVLDAIVTKVTNLGFFAEAGPL-SIFVSTQLIPSDMIFDAQSAVPCFVSEDGSSKISKDDEVRLQIKGTR-VDATEIF-AIGSIREDYLG 169
BLAST of g.barbadense_cottongen_reftransV1_0097920 vs. ExPASy Swiss-Prot
Match: RPB7_SCHPO (DNA-directed RNA polymerase II subunit rpb7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpb7 PE=1 SV=1) HSP 1 Score: 57.7658 bits (138), Expect = 2.733e-8 Identity = 37/129 (28.68%), Postives = 62/129 (48.06%), Query Frame = 3 Query: 1230 GYFMAV--TTLESIGEGRVRQNSGDVLFPVVFSGITFKMYRGEILQGVVHKILKHGVFLRCGPVQNIYLSHIKMPDYHYVPGENGIFMNDKHSKIDKDVIVRFIVIGTKWMEAEREFQALVSLEGDYLG 1610 GY + V + I +GRV G F V + + ++ +RGE++ +V + K G F GP+ SH+ PD + P N + + I+K VR ++GT+ E A+ +++ DYLG Sbjct: 44 GYIICVLDSNTIDIDKGRVVPGQGFAEFEVKYRAVLWRPFRGEVVDAIVTTVNKMGFFANIGPLNVFVSSHLVPPDMKFDPTANPPNYSGEDQVIEKGSNVRLKIVGTR--TDATEIFAIATMKEDYLG 170
BLAST of g.barbadense_cottongen_reftransV1_0097920 vs. ExPASy Swiss-Prot
Match: RPOE1_METJA (DNA-directed RNA polymerase subunit E' OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=rpoE1 PE=1 SV=1) HSP 1 Score: 55.4546 bits (132), Expect = 1.829e-7 Identity = 48/158 (30.38%), Postives = 83/158 (52.53%), Query Frame = 3 Query: 1155 GLMLKKAIVIRLMDEFACKKATKDLGYFMAVTTLESIGEGRVRQNSGDVLFPVVFSGITF--KMYRGEILQGVVHKILKHGVFLRCGPVQN-IYLSHIKMPDY-HYVPGENGIFMND--KHSKIDKDVIVRFIVIGTKWMEAEREFQALVSLEGDYLG 1610 G LK+ + LM+++ + KD+G+ +++ ++ IGEG+V G PVVF + + +MY E+++G V +++ G F+R GP+ I++S I M DY Y P I + K +I V R + I K E +R + +++ YLG Sbjct: 19 GKDLKETVKKILMEKYEGR-LDKDVGFVLSIVDVKDIGEGKVVHGDGSAYHPVVFETLVYIPEMY--ELIEGEVVDVVEFGSFVRLGPLDGLIHVSQI-MDDYVSYDPKREAIIGKETGKVLEIGDYVRARIVAISLK-AERKRGSKIALTMRQPYLG 171
BLAST of g.barbadense_cottongen_reftransV1_0097920 vs. ExPASy TrEMBL
Match: A0A0D2QQ09_GOSRA (Uncharacterized protein (Fragment) OS=Gossypium raimondii GN=B456_009G298700 PE=4 SV=1) HSP 1 Score: 357.836 bits (917), Expect = 6.816e-116 Identity = 172/174 (98.85%), Postives = 173/174 (99.43%), Query Frame = 3 Query: 1098 LKVQMPWNVIIPADSLDAKGLMLKKAIVIRLMDEFACKKATKDLGYFMAVTTLESIGEGRVRQNSGDVLFPVVFSGITFKMYRGEILQGVVHKILKHGVFLRCGPVQNIYLSHIKMPDYHYVPGENGIFMNDKHSKIDKDVIVRFIVIGTKWMEAEREFQALVSLEGDYLGPVS 1619 LKVQMPWNVIIPADSLDAKGLMLKKAIVIRLMDEFACKKATKD GYFMAVTTLESIGEGRVRQN+GDVLFPVVFSGITFKMYRGEILQGVVHKILKHGVFLRCGPVQNIYLSHIKMPDYHYVPGENGIFMNDKHSKIDKDVIVRFIVIGTKWMEAEREFQALVSLEGDYLGPVS Sbjct: 30 LKVQMPWNVIIPADSLDAKGLMLKKAIVIRLMDEFACKKATKDRGYFMAVTTLESIGEGRVRQNTGDVLFPVVFSGITFKMYRGEILQGVVHKILKHGVFLRCGPVQNIYLSHIKMPDYHYVPGENGIFMNDKHSKIDKDVIVRFIVIGTKWMEAEREFQALVSLEGDYLGPVS 203
BLAST of g.barbadense_cottongen_reftransV1_0097920 vs. ExPASy TrEMBL
Match: A0A0B0PUV3_GOSAR (DNA-directed RNA polymerase II subunit RPB7 OS=Gossypium arboreum GN=F383_15637 PE=4 SV=1) HSP 1 Score: 357.451 bits (916), Expect = 8.235e-116 Identity = 173/174 (99.43%), Postives = 173/174 (99.43%), Query Frame = 3 Query: 1098 LKVQMPWNVIIPADSLDAKGLMLKKAIVIRLMDEFACKKATKDLGYFMAVTTLESIGEGRVRQNSGDVLFPVVFSGITFKMYRGEILQGVVHKILKHGVFLRCGPVQNIYLSHIKMPDYHYVPGENGIFMNDKHSKIDKDVIVRFIVIGTKWMEAEREFQALVSLEGDYLGPVS 1619 LKVQMPWNVIIPADSLDAKGLMLKKAIVIRLMDEFACKKATKDLGYFMAVTTLESIGEGRVRQNSGDVLFPVVFSGITFKMYRGEILQGVVHKILKHGVFLRCGPVQNIYLSHIKMPDY YVPGENGIFMNDKHSKIDKDVIVRFIVIGTKWMEAEREFQALVSLEGDYLGPVS Sbjct: 24 LKVQMPWNVIIPADSLDAKGLMLKKAIVIRLMDEFACKKATKDLGYFMAVTTLESIGEGRVRQNSGDVLFPVVFSGITFKMYRGEILQGVVHKILKHGVFLRCGPVQNIYLSHIKMPDYQYVPGENGIFMNDKHSKIDKDVIVRFIVIGTKWMEAEREFQALVSLEGDYLGPVS 197
BLAST of g.barbadense_cottongen_reftransV1_0097920 vs. ExPASy TrEMBL
Match: A0A0D2UVK8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G298700 PE=4 SV=1) HSP 1 Score: 356.681 bits (914), Expect = 1.155e-115 Identity = 172/174 (98.85%), Postives = 173/174 (99.43%), Query Frame = 3 Query: 1098 LKVQMPWNVIIPADSLDAKGLMLKKAIVIRLMDEFACKKATKDLGYFMAVTTLESIGEGRVRQNSGDVLFPVVFSGITFKMYRGEILQGVVHKILKHGVFLRCGPVQNIYLSHIKMPDYHYVPGENGIFMNDKHSKIDKDVIVRFIVIGTKWMEAEREFQALVSLEGDYLGPVS 1619 LKVQMPWNVIIPADSLDAKGLMLKKAIVIRLMDEFACKKATKD GYFMAVTTLESIGEGRVRQN+GDVLFPVVFSGITFKMYRGEILQGVVHKILKHGVFLRCGPVQNIYLSHIKMPDYHYVPGENGIFMNDKHSKIDKDVIVRFIVIGTKWMEAEREFQALVSLEGDYLGPVS Sbjct: 9 LKVQMPWNVIIPADSLDAKGLMLKKAIVIRLMDEFACKKATKDRGYFMAVTTLESIGEGRVRQNTGDVLFPVVFSGITFKMYRGEILQGVVHKILKHGVFLRCGPVQNIYLSHIKMPDYHYVPGENGIFMNDKHSKIDKDVIVRFIVIGTKWMEAEREFQALVSLEGDYLGPVS 182
BLAST of g.barbadense_cottongen_reftransV1_0097920 vs. ExPASy TrEMBL
Match: A0A0D2SA07_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G298700 PE=4 SV=1) HSP 1 Score: 355.525 bits (911), Expect = 2.216e-115 Identity = 172/174 (98.85%), Postives = 173/174 (99.43%), Query Frame = 3 Query: 1098 LKVQMPWNVIIPADSLDAKGLMLKKAIVIRLMDEFACKKATKDLGYFMAVTTLESIGEGRVRQNSGDVLFPVVFSGITFKMYRGEILQGVVHKILKHGVFLRCGPVQNIYLSHIKMPDYHYVPGENGIFMNDKHSKIDKDVIVRFIVIGTKWMEAEREFQALVSLEGDYLGPVS 1619 LKVQMPWNVIIPADSLDAKGLMLKKAIVIRLMDEFACKKATKD GYFMAVTTLESIGEGRVRQN+GDVLFPVVFSGITFKMYRGEILQGVVHKILKHGVFLRCGPVQNIYLSHIKMPDYHYVPGENGIFMNDKHSKIDKDVIVRFIVIGTKWMEAEREFQALVSLEGDYLGPVS Sbjct: 3 LKVQMPWNVIIPADSLDAKGLMLKKAIVIRLMDEFACKKATKDRGYFMAVTTLESIGEGRVRQNTGDVLFPVVFSGITFKMYRGEILQGVVHKILKHGVFLRCGPVQNIYLSHIKMPDYHYVPGENGIFMNDKHSKIDKDVIVRFIVIGTKWMEAEREFQALVSLEGDYLGPVS 176
BLAST of g.barbadense_cottongen_reftransV1_0097920 vs. ExPASy TrEMBL
Match: A0A061FY25_THECC (RNA polymerase Rpb7-like, N-terminal domain OS=Theobroma cacao GN=TCM_044847 PE=4 SV=1) HSP 1 Score: 334.339 bits (856), Expect = 4.194e-107 Identity = 156/174 (89.66%), Postives = 172/174 (98.85%), Query Frame = 3 Query: 1098 LKVQMPWNVIIPADSLDAKGLMLKKAIVIRLMDEFACKKATKDLGYFMAVTTLESIGEGRVRQNSGDVLFPVVFSGITFKMYRGEILQGVVHKILKHGVFLRCGPVQNIYLSHIKMPDYHYVPGENGIFMNDKHSKIDKDVIVRFIVIGTKWMEAEREFQALVSLEGDYLGPVS 1619 LKVQ+PWNVIIPADSL AKGLML+KAIV+RL+D+FACKKATKDLGYF+AVTTLESIG+G+VRQN+GDVLFPVVFSGITFKM+RGEIL+GVVHKILKHGVFLRCGPVQNIYLSH+KMPDYHYVPGEN IFMN+KHSKI+KDV+VRFIVIGTKW+EAEREFQALVSLEGDYLGPVS Sbjct: 3 LKVQLPWNVIIPADSLGAKGLMLQKAIVVRLLDDFACKKATKDLGYFIAVTTLESIGDGKVRQNTGDVLFPVVFSGITFKMFRGEILEGVVHKILKHGVFLRCGPVQNIYLSHLKMPDYHYVPGENAIFMNEKHSKIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLGPVS 176
BLAST of g.barbadense_cottongen_reftransV1_0097920 vs. ExPASy TrEMBL
Match: A0A061FRK7_THECC (RNA polymerase Rpb7-like, N-terminal domain isoform 1 OS=Theobroma cacao GN=TCM_044843 PE=4 SV=1) HSP 1 Score: 333.569 bits (854), Expect = 7.974e-107 Identity = 156/174 (89.66%), Postives = 171/174 (98.28%), Query Frame = 3 Query: 1098 LKVQMPWNVIIPADSLDAKGLMLKKAIVIRLMDEFACKKATKDLGYFMAVTTLESIGEGRVRQNSGDVLFPVVFSGITFKMYRGEILQGVVHKILKHGVFLRCGPVQNIYLSHIKMPDYHYVPGENGIFMNDKHSKIDKDVIVRFIVIGTKWMEAEREFQALVSLEGDYLGPVS 1619 LKVQ+PWNVIIPADSL AKGLML+KAIV+ L+D+FACKKATKDLGYF+AVTTLESIG+G+VRQN+GDVLFPVVFSGITFKM+RGEIL+GVVHKILKHGVFLRCGPVQNIYLSH+KMPDYHYVPGEN IFMNDKHSKI+KDV+VRFIVIGTKW+EAEREFQALVSLEGDYLGPVS Sbjct: 3 LKVQLPWNVIIPADSLGAKGLMLQKAIVVHLLDDFACKKATKDLGYFIAVTTLESIGDGKVRQNTGDVLFPVVFSGITFKMFRGEILEGVVHKILKHGVFLRCGPVQNIYLSHLKMPDYHYVPGENAIFMNDKHSKIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLGPVS 176
BLAST of g.barbadense_cottongen_reftransV1_0097920 vs. ExPASy TrEMBL
Match: A0A061FRL0_THECC (RNA polymerase Rpb7-like, N-terminal domain OS=Theobroma cacao GN=TCM_044852 PE=4 SV=1) HSP 1 Score: 327.791 bits (839), Expect = 1.448e-104 Identity = 154/174 (88.51%), Postives = 169/174 (97.13%), Query Frame = 3 Query: 1098 LKVQMPWNVIIPADSLDAKGLMLKKAIVIRLMDEFACKKATKDLGYFMAVTTLESIGEGRVRQNSGDVLFPVVFSGITFKMYRGEILQGVVHKILKHGVFLRCGPVQNIYLSHIKMPDYHYVPGENGIFMNDKHSKIDKDVIVRFIVIGTKWMEAEREFQALVSLEGDYLGPVS 1619 LKVQ+PWNVIIPADSL A+GLML+KAIV+RL D+FACKKATKDLGYF+AVTTLESIG+G+VRQN+GDV FPVVFSGITFKM+RGEIL+GVVHKILKHGVFLRCGPVQNIYLSH+KMPDYHYVPGEN IFMNDKHSKI+KDV+VRFIVIGTKW+EAEREFQAL SLEGDYLGPVS Sbjct: 3 LKVQLPWNVIIPADSLGAEGLMLQKAIVVRLWDDFACKKATKDLGYFIAVTTLESIGDGKVRQNTGDVPFPVVFSGITFKMFRGEILEGVVHKILKHGVFLRCGPVQNIYLSHLKMPDYHYVPGENAIFMNDKHSKIEKDVVVRFIVIGTKWLEAEREFQALFSLEGDYLGPVS 176
BLAST of g.barbadense_cottongen_reftransV1_0097920 vs. ExPASy TrEMBL
Match: A0A0A0LKQ1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G193330 PE=4 SV=1) HSP 1 Score: 311.612 bits (797), Expect = 1.943e-98 Identity = 145/174 (83.33%), Postives = 169/174 (97.13%), Query Frame = 3 Query: 1098 LKVQMPWNVIIPADSLDAKGLMLKKAIVIRLMDEFACKKATKDLGYFMAVTTLESIGEGRVRQNSGDVLFPVVFSGITFKMYRGEILQGVVHKILKHGVFLRCGPVQNIYLSHIKMPDYHYVPGENGIFMNDKHSKIDKDVIVRFIVIGTKWMEAEREFQALVSLEGDYLGPVS 1619 LKVQ+PWNVIIPA++LDAKGLML+++I+IRL+DEFA KKATKDLGYF+AVTTLE+IGEG+VRQ +GDVLFPV+FSGITFK+YRGEIL+GVVHK+LKHGVFLRCGPV+NIYLS++KMPDY YVPGEN +F+NDK SKI+KDV+VRFIVIGTKW+EAEREFQALVSLEGDYLGPVS Sbjct: 3 LKVQLPWNVIIPAENLDAKGLMLQRSIIIRLLDEFATKKATKDLGYFLAVTTLENIGEGKVRQ-TGDVLFPVIFSGITFKLYRGEILEGVVHKVLKHGVFLRCGPVENIYLSYLKMPDYRYVPGENPVFLNDKLSKIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLGPVS 175
BLAST of g.barbadense_cottongen_reftransV1_0097920 vs. ExPASy TrEMBL
Match: B9S9D8_RICCO (DNA-directed RNA polymerase II 19 kD polypeptide rpb7, putative OS=Ricinus communis GN=RCOM_0884250 PE=4 SV=1) HSP 1 Score: 304.679 bits (779), Expect = 8.300e-96 Identity = 139/174 (79.89%), Postives = 168/174 (96.55%), Query Frame = 3 Query: 1098 LKVQMPWNVIIPADSLDAKGLMLKKAIVIRLMDEFACKKATKDLGYFMAVTTLESIGEGRVRQNSGDVLFPVVFSGITFKMYRGEILQGVVHKILKHGVFLRCGPVQNIYLSHIKMPDYHYVPGENGIFMNDKHSKIDKDVIVRFIVIGTKWMEAEREFQALVSLEGDYLGPVS 1619 LKVQ+PWNVII A+ LDAKGLML+++I+IRL+++FA KKATKDLGY++AVTTLESIGEG+VR+++GDVLFPVVF+GITFK++RGEIL+GVVHK+LKHGVF+RCGP++NIYLS +KMPDYHYVPGEN +F+NDK SKI+KDV+VRFIVIGTKW+EAEREFQALVSLEGDYLGPVS Sbjct: 3 LKVQLPWNVIISAEHLDAKGLMLQRSIIIRLLEDFASKKATKDLGYYLAVTTLESIGEGKVREHTGDVLFPVVFNGITFKIFRGEILEGVVHKVLKHGVFIRCGPIENIYLSCMKMPDYHYVPGENPVFLNDKTSKIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLGPVS 176
BLAST of g.barbadense_cottongen_reftransV1_0097920 vs. ExPASy TrEMBL
Match: B9HKE3_POPTR (RNA polymerase Rpb7 N-terminal domain-containing family protein OS=Populus trichocarpa GN=POPTR_0008s16160g PE=4 SV=1) HSP 1 Score: 301.212 bits (770), Expect = 2.376e-94 Identity = 137/174 (78.74%), Postives = 166/174 (95.40%), Query Frame = 3 Query: 1098 LKVQMPWNVIIPADSLDAKGLMLKKAIVIRLMDEFACKKATKDLGYFMAVTTLESIGEGRVRQNSGDVLFPVVFSGITFKMYRGEILQGVVHKILKHGVFLRCGPVQNIYLSHIKMPDYHYVPGENGIFMNDKHSKIDKDVIVRFIVIGTKWMEAEREFQALVSLEGDYLGPVS 1619 LKVQ+PWNVIIPA++LDAKGLML+++IV+RL+D+FA K ATKDLGY++AV+TLESIGEG+VRQ++GDVLFPVVFSGITFK++RGEIL G+VHK+LKHGV LRCGP++NIYLS +KMPDY YVPGEN +F+NDK SKI+KDV+VRF+V+GTKW+EAEREFQALVSLEGDYLGPVS Sbjct: 3 LKVQLPWNVIIPAENLDAKGLMLQRSIVVRLLDDFAKKGATKDLGYYLAVSTLESIGEGKVRQHTGDVLFPVVFSGITFKIFRGEILDGIVHKVLKHGVLLRCGPIENIYLSCMKMPDYRYVPGENPVFLNDKTSKIEKDVVVRFVVLGTKWLEAEREFQALVSLEGDYLGPVS 176 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0097920 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 13
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BLAST of g.barbadense_cottongen_reftransV1_0097920 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0097920 ID=g.barbadense_cottongen_reftransV1_0097920; Name=g.barbadense_cottongen_reftransV1_0097920; organism=Gossypium barbadense; type=contig; length=2035bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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