g.barbadense_cottongen_reftransV1_0097920, g.barbadense_cottongen_reftransV1_0097920 (contig) Gossypium barbadense

Overview


Name	g.barbadense_cottongen_reftransV1_0097920
Unique Name	g.barbadense_cottongen_reftransV1_0097920
Type	contig
Organism	Gossypium barbadense (Sea Island cotton)
Sequence length	2035

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Dt05	chromosome	g.barbadense_cottongen_reftransV1_0097920:21..2035 . Dt05:29537521..29539636 -

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium barbadense CottonGen RefTrans V1	2016-11-01
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot	2016-11-01
InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1	2016-11-02
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL	2016-11-02

Homology

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097920 vs. ExPASy Swiss-Prot
Match: NRPE7_ARATH (DNA-directed RNA polymerase V subunit 7 OS=Arabidopsis thaliana GN=NRPE7 PE=1 SV=1)

HSP 1 Score: 274.633 bits (701), Expect = 3.385e-86
Identity = 119/174 (68.39%), Postives = 157/174 (90.23%), Query Frame = 3

Query: 1098 LKVQMPWNVIIPADSLDAKGLMLKKAIVIRLMDEFACKKATKDLGYFMAVTTLESIGEGRVRQNSGDVLFPVVFSGITFKMYRGEILQGVVHKILKHGVFLRCGPVQNIYLSHIKMPDYHYVPGENGIFMNDKHSKIDKDVIVRFIVIGTKWMEAEREFQALVSLEGDYLGPVS 1619
            LKVQ+PWNV+IPA+++DAKGLMLK+AI++ L++ FA KKATK+LGY++AVTTL+ IGEG++R+++G+VLFPV+FSG+TFK+++GEI+ GVVHK+LKHGVF+RCGP++N+YLS+ KMPDY Y+PGEN IFMN+K S+I  +  VR +VIG KWME EREFQAL SLEGDYLGP+S
Sbjct:    3 LKVQLPWNVMIPAENMDAKGLMLKRAILVELLEAFASKKATKELGYYVAVTTLDKIGEGKIREHTGEVLFPVMFSGMTFKIFKGEIIHGVVHKVLKHGVFMRCGPIENVYLSYTKMPDYKYIPGENPIFMNEKTSRIQVETTVRVVVIGIKWMEVEREFQALASLEGDYLGPLS 176

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097920 vs. ExPASy Swiss-Prot
Match: NRPD7_ARATH (DNA-directed RNA polymerase IV subunit 7 OS=Arabidopsis thaliana GN=NRPD7 PE=1 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 9.294e-63
Identity = 97/172 (56.40%), Postives = 136/172 (79.07%), Query Frame = 3

Query: 1098 LKVQMPWNVIIPADSLDAKGLMLKKAIVIRLMDEFACKKATKDLGYFMAVTTLESIGEGRVRQNSGDVLFPVVFSGITFKMYRGEILQGVVHKILKHGVFLRCGPVQNIYLSHIKMPDYHYVPGENGIFMNDKHSKIDKDVIVRFIVIGTKWMEAEREFQALVSLEGDYLGP 1613
            +KV++PW+V IPA+ +D  GLML++AIVIRL++ F+ +KATKDLGY +  T LE+IGEG++++ +G++ FPVVF+GI FKM++GEI+ GVVHK+ K GVFL+ GP + IYLSH+KMP Y ++PGEN  FMN   S+I     VRF+V+ T+W EAE++F AL S++GD LGP
Sbjct:    3 IKVKLPWDVTIPAEDMDT-GLMLQRAIVIRLLEAFSKEKATKDLGYLITPTILENIGEGKIKEQTGEIQFPVVFNGICFKMFKGEIVHGVVHKVHKTGVFLKSGPYEIIYLSHMKMPGYEFIPGENPFFMNQYMSRIQIGARVRFVVLDTEWREAEKDFMALASIDGDNLGP 173

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097920 vs. ExPASy Swiss-Prot
Match: RPB7L_ARATH (DNA-directed RNA polymerase subunit 7-like protein OS=Arabidopsis thaliana GN=NRPB7L PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 9.389e-23
Identity = 67/190 (35.26%), Postives = 103/190 (54.21%), Query Frame = 3

Query: 1101 KVQMPWNVIIPADSLDAKGLMLKKAIVIRLMDEFACKKATKDLGYFMAVTTLESIGEGRVR-------QNSGDVLFPVVFSGITFKMYRGEILQGVVHKILKHGVFLRCGPVQNIYLSHIKMPDYHYVPG-----ENGIFMNDKHSKIDKDVIVRFIVIGTKWME----AEREFQALVSLEGD-YLGPVS 1619
            +V+M  +V I A  L+  G    + I+ RL+ +   +KA ++ G+++ +T L+SIG  +           +  + FPV F+  TF   RG+ILQG V K+L +G F+R GP++  YLS +KMP YHYV       E   F  D  SKI   V+VRF V+  ++ E       ++  L +LEG+   GP+S
Sbjct:    4 EVEMARDVAICAKHLN--GQSPHQPILCRLLQDLIHEKACREHGFYLGITALKSIGNNKNNNIDNENNHQAKILTFPVSFTCRTFLPARGDILQGTVKKVLWNGAFIRSGPLRYAYLSLLKMPHYHYVHSPLSEDEKPHFQKDDLSKIAVGVVVRFQVLAVRFKERPHKRRNDYYVLATLEGNGSFGPIS 191

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097920 vs. ExPASy Swiss-Prot
Match: RPB7_SOYBN (DNA-directed RNA polymerase II subunit RPB7 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.798e-14
Identity = 51/156 (32.69%), Postives = 88/156 (56.41%), Query Frame = 3

Query: 1155 GLMLKKAIVIRLMDEFACKKATKDLGYFMAVTTLESIGEGRVRQNSGDVLFPVVFSGITFKMYRGEILQGVVHKILKHGVFLRCGPVQNIYLSHIKMPDYHYVPGENGIF-MNDKHSKIDKDVIVRFIVIGTKWMEAEREFQALVSLEGDYLGPVS 1619
            G  L+  +V +LM +     + +  G+ +AVT +E+IG+G +R  +G V FPV +  + F+ ++GEIL+ VV  + K G F   GPVQ    +H+   D  +  G+   +  +D   KI KD  VR  +IGT+ ++A   F  + +++ D+LG ++
Sbjct:   19 GRNLRDNLVSKLMKDVEGTCSGRH-GFVVAVTGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSVKIQKDSEVRLKIIGTR-VDATEIF-CIGTIKDDFLGVIN 171

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097920 vs. ExPASy Swiss-Prot
Match: NRPB7_ARATH (DNA-directed RNA polymerase II subunit 7 OS=Arabidopsis thaliana GN=NRPB7 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.471e-13
Identity = 49/156 (31.41%), Postives = 88/156 (56.41%), Query Frame = 3

Query: 1155 GLMLKKAIVIRLMDEFACKKATKDLGYFMAVTTLESIGEGRVRQNSGDVLFPVVFSGITFKMYRGEILQGVVHKILKHGVFLRCGPVQNIYLSHIKMPDYHYVPGENGIF-MNDKHSKIDKDVIVRFIVIGTKWMEAEREFQALVSLEGDYLGPVS 1619
            G  LK+ +V +LM +     + +  G+ +A+T +++IG+G +R  +G V FPV +  + F+ ++GEIL+ VV  + K G F   GPVQ     H+   D  +  G+   +  +D   KI K+  VR  +IGT+ ++A   F  + +++ D+LG ++
Sbjct:   19 GRNLKENLVSKLMKDVEGTCSGRH-GFVVAITGIDTIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQIFVSKHLIPDDMEFQAGDMPNYTTSDGSVKIQKECEVRLKIIGTR-VDATAIF-CVGTIKDDFLGVIN 171

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097920 vs. ExPASy Swiss-Prot
Match: RPB7_DANRE (DNA-directed RNA polymerase II subunit RPB7 OS=Danio rerio GN=polr2g PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.729e-11
Identity = 43/137 (31.39%), Postives = 72/137 (52.55%), Query Frame = 3

Query: 1215 ATKDLGYFMAVTTLESIGEGRVRQNSGDVLFPVVFSGITFKMYRGEILQGVVHKILKHGVFLRCGPVQNIYLSHIKMPDYHYVPGENGIFMN--DKHSKIDKDVIVRFIVIGTKWMEAEREFQALVSLEGDYLGPVS 1619
             T   G+ +AVTT+++IG G ++   G VL+PV +  I F+ ++GE++  VV ++ K G+F   GP+      H    +  + P  N       D+   I +D  +R  ++GT+    + +  A+ SL  DYLG VS
Sbjct:   38 CTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTVDEDVVIQQDDEIRLKIVGTRV--DKNDIFAIGSLMDDYLGLVS 172

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097920 vs. ExPASy Swiss-Prot
Match: RPB7_RAT (DNA-directed RNA polymerase II subunit RPB7 OS=Rattus norvegicus GN=Polr2g PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.093e-11
Identity = 43/137 (31.39%), Postives = 72/137 (52.55%), Query Frame = 3

Query: 1215 ATKDLGYFMAVTTLESIGEGRVRQNSGDVLFPVVFSGITFKMYRGEILQGVVHKILKHGVFLRCGPVQNIYLSHIKMPDYHYVPGENGIFMN--DKHSKIDKDVIVRFIVIGTKWMEAEREFQALVSLEGDYLGPVS 1619
             T   G+ +AVTT+++IG G ++   G VL+PV +  I F+ ++GE++  VV ++ K G+F   GP+      H    +  + P  N       D+   I +D  +R  ++GT+    + +  A+ SL  DYLG VS
Sbjct:   38 CTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRV--DKNDIFAIGSLMDDYLGLVS 172

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097920 vs. ExPASy Swiss-Prot
Match: RPB7_MOUSE (DNA-directed RNA polymerase II subunit RPB7 OS=Mus musculus GN=Polr2g PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.093e-11
Identity = 43/137 (31.39%), Postives = 72/137 (52.55%), Query Frame = 3

Query: 1215 ATKDLGYFMAVTTLESIGEGRVRQNSGDVLFPVVFSGITFKMYRGEILQGVVHKILKHGVFLRCGPVQNIYLSHIKMPDYHYVPGENGIFMN--DKHSKIDKDVIVRFIVIGTKWMEAEREFQALVSLEGDYLGPVS 1619
             T   G+ +AVTT+++IG G ++   G VL+PV +  I F+ ++GE++  VV ++ K G+F   GP+      H    +  + P  N       D+   I +D  +R  ++GT+    + +  A+ SL  DYLG VS
Sbjct:   38 CTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRV--DKNDIFAIGSLMDDYLGLVS 172

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097920 vs. ExPASy Swiss-Prot
Match: RPB7_HUMAN (DNA-directed RNA polymerase II subunit RPB7 OS=Homo sapiens GN=POLR2G PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.093e-11
Identity = 43/137 (31.39%), Postives = 72/137 (52.55%), Query Frame = 3

Query: 1215 ATKDLGYFMAVTTLESIGEGRVRQNSGDVLFPVVFSGITFKMYRGEILQGVVHKILKHGVFLRCGPVQNIYLSHIKMPDYHYVPGENGIFMN--DKHSKIDKDVIVRFIVIGTKWMEAEREFQALVSLEGDYLGPVS 1619
             T   G+ +AVTT+++IG G ++   G VL+PV +  I F+ ++GE++  VV ++ K G+F   GP+      H    +  + P  N       D+   I +D  +R  ++GT+    + +  A+ SL  DYLG VS
Sbjct:   38 CTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRV--DKNDIFAIGSLMDDYLGLVS 172

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097920 vs. ExPASy Swiss-Prot
Match: RPB7_BOVIN (DNA-directed RNA polymerase II subunit RPB7 OS=Bos taurus GN=POLR2G PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.093e-11
Identity = 43/137 (31.39%), Postives = 72/137 (52.55%), Query Frame = 3

Query: 1215 ATKDLGYFMAVTTLESIGEGRVRQNSGDVLFPVVFSGITFKMYRGEILQGVVHKILKHGVFLRCGPVQNIYLSHIKMPDYHYVPGENGIFMN--DKHSKIDKDVIVRFIVIGTKWMEAEREFQALVSLEGDYLGPVS 1619
             T   G+ +AVTT+++IG G ++   G VL+PV +  I F+ ++GE++  VV ++ K G+F   GP+      H    +  + P  N       D+   I +D  +R  ++GT+    + +  A+ SL  DYLG VS
Sbjct:   38 CTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRV--DKNDIFAIGSLMDDYLGLVS 172

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097920 vs. ExPASy TrEMBL
Match: C6T5N3_SOYBN (Uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 285.804 bits (730), Expect = 2.217e-88
Identity = 132/174 (75.86%), Postives = 157/174 (90.23%), Query Frame = 3

Query: 1098 LKVQMPWNVIIPADSLDAKGLMLKKAIVIRLMDEFACKKATKDLGYFMAVTTLESIGEGRVRQNSGDVLFPVVFSGITFKMYRGEILQGVVHKILKHGVFLRCGPVQNIYLSHIKMPDYHYVPGENGIFMNDKHSKIDKDVIVRFIVIGTKWMEAEREFQALVSLEGDYLGPVS 1619
            LKVQ+ WNVII A++L  +GLML +AI++RL+ +FA KKATKDLGYF+AVTTLE IGEG+VRQ++GDVLFPVVF+ ITFK ++GEIL+GVVHK+LKHGVF+RCGP++N+YLS++KMPDY YVPGEN  FMNDK SKI KDV VRF VIGTKWMEAEREFQALVSLEGDYLGP+S
Sbjct:    3 LKVQLHWNVIIAAENLQPEGLMLHRAIIVRLLSDFAVKKATKDLGYFLAVTTLEKIGEGKVRQHTGDVLFPVVFNVITFKFFKGEILEGVVHKVLKHGVFMRCGPIENVYLSNLKMPDYRYVPGENACFMNDKMSKIGKDVTVRFSVIGTKWMEAEREFQALVSLEGDYLGPIS 176

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097920 vs. ExPASy TrEMBL
Match: V4U3Q3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006012mg PE=4 SV=1)

HSP 1 Score: 285.419 bits (729), Expect = 3.436e-88
Identity = 129/174 (74.14%), Postives = 162/174 (93.10%), Query Frame = 3

Query: 1098 LKVQMPWNVIIPADSLDAKGLMLKKAIVIRLMDEFACKKATKDLGYFMAVTTLESIGEGRVRQNSGDVLFPVVFSGITFKMYRGEILQGVVHKILKHGVFLRCGPVQNIYLSHIKMPDYHYVPGENGIFMNDKHSKIDKDVIVRFIVIGTKWMEAEREFQALVSLEGDYLGPVS 1619
            LKV++PWNV++PA++LDAKG ML+++IVIRL+D+FA +KATKDLGYF+AVTTLE+IGEGRVR+N+G+VLFPVVFSGITFK++RGE+L G VHK+LKHGVFL+CGPV+NIYL+  KMPDY YV  EN +F+++K+ KI+KDV+VR IVIGTKW+EAEREFQALVSLEGD+LGPVS
Sbjct:    3 LKVKLPWNVVVPAENLDAKGPMLQRSIVIRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 176

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097920 vs. ExPASy TrEMBL
Match: A0A067DX79_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g030170mg PE=4 SV=1)

HSP 1 Score: 284.648 bits (727), Expect = 6.288e-88
Identity = 128/174 (73.56%), Postives = 162/174 (93.10%), Query Frame = 3

Query: 1098 LKVQMPWNVIIPADSLDAKGLMLKKAIVIRLMDEFACKKATKDLGYFMAVTTLESIGEGRVRQNSGDVLFPVVFSGITFKMYRGEILQGVVHKILKHGVFLRCGPVQNIYLSHIKMPDYHYVPGENGIFMNDKHSKIDKDVIVRFIVIGTKWMEAEREFQALVSLEGDYLGPVS 1619
            LKV++PWNV++PA++LDAKG ML+++IV+RL+D+FA +KATKDLGYF+AVTTLE+IGEGRVR+N+G+VLFPVVFSGITFK++RGE+L G VHK+LKHGVFL+CGPV+NIYL+  KMPDY YV  EN +F+++K+ KI+KDV+VR IVIGTKW+EAEREFQALVSLEGD+LGPVS
Sbjct:    3 LKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 176

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097920 vs. ExPASy TrEMBL
Match: A0A0D3DLU4_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 280.411 bits (716), Expect = 2.293e-86
Identity = 119/174 (68.39%), Postives = 161/174 (92.53%), Query Frame = 3

Query: 1098 LKVQMPWNVIIPADSLDAKGLMLKKAIVIRLMDEFACKKATKDLGYFMAVTTLESIGEGRVRQNSGDVLFPVVFSGITFKMYRGEILQGVVHKILKHGVFLRCGPVQNIYLSHIKMPDYHYVPGENGIFMNDKHSKIDKDVIVRFIVIGTKWMEAEREFQALVSLEGDYLGPVS 1619
            LKV++PWNV+IPA+++DAKGLMLK+ I+I+L++ FA K+ATK+LGY++ VT+L+ IGEG++R+++G+V+FPVVFSG+TFK+++GEIL+GVVHK+L+HGVF+RCGPV+N+YLSH+KMPDY Y+PGEN IFMN+K S+I  D +VRF+VIGTKWME E+EFQAL SLEGDYLGP+S
Sbjct:    3 LKVELPWNVMIPAENMDAKGLMLKRTILIQLLEAFASKRATKELGYYLTVTSLDKIGEGKIREHTGEVMFPVVFSGMTFKIFKGEILEGVVHKVLRHGVFMRCGPVENVYLSHVKMPDYKYLPGENPIFMNEKMSRIQVDTLVRFVVIGTKWMEVEKEFQALASLEGDYLGPIS 176

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097920 vs. ExPASy TrEMBL
Match: M4FF49_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra039721 PE=4 SV=1)

HSP 1 Score: 280.411 bits (716), Expect = 2.293e-86
Identity = 119/174 (68.39%), Postives = 161/174 (92.53%), Query Frame = 3

Query: 1098 LKVQMPWNVIIPADSLDAKGLMLKKAIVIRLMDEFACKKATKDLGYFMAVTTLESIGEGRVRQNSGDVLFPVVFSGITFKMYRGEILQGVVHKILKHGVFLRCGPVQNIYLSHIKMPDYHYVPGENGIFMNDKHSKIDKDVIVRFIVIGTKWMEAEREFQALVSLEGDYLGPVS 1619
            LKV++PWNV+IPA+++DAKGLMLK+ I+I+L++ FA K+ATK+LGY++ VT+L+ IGEG++R+++G+V+FPVVFSG+TFK+++GEIL+GVVHK+L+HGVF+RCGPV+N+YLSH+KMPDY Y+PGEN IFMN+K S+I  D +VRF+VIGTKWME E+EFQAL SLEGDYLGP+S
Sbjct:    3 LKVELPWNVMIPAENMDAKGLMLKRTILIQLLEAFASKRATKELGYYLTVTSLDKIGEGKIREHTGEVMFPVVFSGMTFKIFKGEILEGVVHKVLRHGVFMRCGPVENVYLSHVKMPDYKYLPGENPIFMNEKMSRIQVDTLVRFVVIGTKWMEVEKEFQALASLEGDYLGPIS 176

The following BLAST results are available for this feature:

BLAST of g.barbadense_cottongen_reftransV1_0097920 vs. ExPASy Swiss-Prot
BLAST of g.barbadense_cottongen_reftransV1_0097920 vs. ExPASy TrEMBL

BLAST of g.barbadense_cottongen_reftransV1_0097920 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 13


Match Name	E-value	Identity	Description
NRPE7_ARATH	3.385e-86	68.39	DNA-directed RNA polymerase V subunit 7 OS=Arabido...	[more]
NRPD7_ARATH	9.294e-63	56.40	DNA-directed RNA polymerase IV subunit 7 OS=Arabid...	[more]
RPB7L_ARATH	9.389e-23	35.26	DNA-directed RNA polymerase subunit 7-like protein...	[more]
RPB7_SOYBN	1.798e-14	32.69	DNA-directed RNA polymerase II subunit RPB7 OS=Gly...	[more]
NRPB7_ARATH	1.471e-13	31.41	DNA-directed RNA polymerase II subunit 7 OS=Arabid...	[more]
RPB7_DANRE	1.729e-11	31.39	DNA-directed RNA polymerase II subunit RPB7 OS=Dan...	[more]
RPB7_RAT	2.093e-11	31.39	DNA-directed RNA polymerase II subunit RPB7 OS=Rat...	[more]
RPB7_MOUSE	2.093e-11	31.39	DNA-directed RNA polymerase II subunit RPB7 OS=Mus...	[more]
RPB7_HUMAN	2.093e-11	31.39	DNA-directed RNA polymerase II subunit RPB7 OS=Hom...	[more]
RPB7_BOVIN	2.093e-11	31.39	DNA-directed RNA polymerase II subunit RPB7 OS=Bos...	[more]

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BLAST of g.barbadense_cottongen_reftransV1_0097920 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
C6T5N3_SOYBN	2.217e-88	75.86	Uncharacterized protein OS=Glycine max PE=2 SV=1	[more]
V4U3Q3_9ROSI	3.436e-88	74.14	Uncharacterized protein OS=Citrus clementina GN=CI...	[more]
A0A067DX79_CITSI	6.288e-88	73.56	Uncharacterized protein OS=Citrus sinensis GN=CISI...	[more]
A0A0D3DLU4_BRAOL	2.293e-86	68.39	Uncharacterized protein OS=Brassica oleracea var. ...	[more]
M4FF49_BRARP	2.293e-86	68.39	Uncharacterized protein OS=Brassica rapa subsp. pe...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.50.140		coord: 87..175 e-value: 1.4E-21 score: 75.9
None	No IPR available	PANTHER	PTHR12709	DNA-DIRECTED RNA POLYMERASE II, III	coord: 2..176
None	No IPR available	PANTHER	PTHR12709:SF3	DNA-DIRECTED RNA POLYMERASE IV SUBUNIT 7-RELATED	coord: 2..176
IPR005576	RNA polymerase Rpb7, N-terminal	PFAM	PF03876	SHS2_Rpb7-N	coord: 26..81 e-value: 1.9E-6 score: 28.0
IPR005576	RNA polymerase Rpb7, N-terminal	GENE3D	3.30.1490.120		coord: 1..83 e-value: 5.1E-14 score: 51.8
IPR005576	RNA polymerase Rpb7, N-terminal	SUPERFAMILY	88798	N-terminal, heterodimerisation domain of RBP7 (RpoE)	coord: 1..81
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 85..174

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.barbadense_cottongen_reftransV1_0097920 ID=g.barbadense_cottongen_reftransV1_0097920; Name=g.barbadense_cottongen_reftransV1_0097920; organism=Gossypium barbadense; type=contig; length=2035bp
CTTGTTTATTCTATTGCATGTTTGACTGATTCTATTGTTTTCCGAATGGC
TTGTGATTTCGACTAGTTGAGTTATATTTTATTTGCATTTCTTGAAATTT
CGTAATGTTAACATGGAGTTCATGTTTTGGTTTATGTATTAAGTTGATGT
TTTTCTTTAGAGAAGATTGATTAGTTGGGTGAGATTCTATATTCAGGATT
TAATCACGAATTCTGCCTGGTAGTATGTGTGGATGCGGATCAGAAAATTG
CCTTCGTTTGTGTTTATGGATTATCACTATTGTTGTTGTTTAATCGGGCA
TGTAATGTAATGATGATAGTTTAGATTAATGTTACTTGGACTCGAGTGTG
ATAGCCGGATATGGTACGTGTCCAACACAGTATGTTTAAATATTTCATGC
ATTTGGAGGACCATTGGAGGTTCAGAACCCCACACCCATATATGCATGAT
ATATTCACTTTTTTTTCTTATTTTTTCCCTTGCATTTGGAGGATCATTTG
AGGTTATGATCCCATACCCTTGTTCGGATGTATGGCAAACATGGATAATT
CACACAAACAAAAAAAGAGATGAGTCAGAGCAACGTAGGTATAACACCTC
TGGGAGTTTGTTAATCATACACATTCGTTTGGAACTACTTTGCTTTTAAA
AGGGTTTCCCTTGTTTTGTGAAGAATTTCAATGGTAATGTTCTGATTTGT
CAATGACTATGAAAATTTAGTTATGAGTTGTGGTTCGTTGAGCCTACTGA
ATTTGCTCACCTTGTTTTGTTTAGAAAATTTCAATTTCTTTTGAAGGAAA
TGGCATGGTTTTCCATTCATAGTATCTGTTTTCTGTTGCTTCATGTTTGA
TTATCGGTTTGGTGTTATCAGTATTTATGGAATTGAGAATTAGTGATGAT
GTGAAACGGGCATTGTTGGGTTTATTCATTACAATTGGGTAATGTTTTAA
GTGGTTGAAAACTAAGTTGTAGGTGAACCTTTTTCAGTTTTTGAATTCTT
CTAGATTGGTATACCATTTTTTGGCTCTGAAGGACATTAATTTCATTGTG
AGTTTCGTTTTTTTTTTGTTTTTAATGTTGTTTTCTGCAGAATGTTTCTC
AAGGTGCAGATGCCATGGAATGTCATAATTCCTGCTGACAGCTTGGATGC
CAAAGGCTTGATGCTCAAAAAGGCAATAGTGATCCGCCTTATGGATGAAT
TTGCTTGCAAGAAGGCCACCAAGGATCTCGGATATTTCATGGCTGTAACA
ACCCTAGAGAGCATTGGCGAGGGCAGAGTTAGACAGAACTCAGGAGATGT
GCTTTTCCCTGTTGTCTTCAGCGGAATTACATTCAAGATGTACAGAGGAG
AGATTCTGCAAGGGGTTGTACATAAGATACTAAAACATGGAGTGTTTTTG
AGGTGTGGACCAGTCCAAAACATATATTTGTCTCACATAAAAATGCCTGA
CTACCACTATGTGCCCGGGGAGAATGGTATATTCATGAACGACAAACACT
CAAAGATTGATAAAGATGTGATCGTTAGGTTTATCGTGATTGGGACCAAA
TGGATGGAGGCCGAGAGGGAATTTCAGGCGTTGGTGAGTTTGGAAGGTGA
CTACTTAGGACCAGTTTCCTGAATATATGACTTTGGTCAACCTATGTACG
TATTAGGAACATGTAGTTTTTGCGACTATAGGGCTAACTTATGATGTTAA
CTTGGTTTTATAGCTTTTGTAAAACTCCTCGCTTATAGGTGATGGAAGTG
ATGGTATATTTGCAATATTCATAAATTTAGTGTTCCATTGTTCAGCCTCC
TTCCTAATACCTTGGATCAATGGTTGAAGGATCGTGTCTGTGTCAAAACT
TTTCTTCACTAGCTTCGCATATAAGAGGAGCTCTGTAATTGTGAAGTGTG
TTGCAAGGTATTGCAATTGTGCAGTTAGCAACCTCTTGAATTATACCATG
TTATGCCGTCGCATATTAACTGTTTCCCTAGATATGAAATGAAAGCAACA
CAATTATGGTATGCTGGTTCAAACACATTCTGCTC

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR005576	Rpb7-like_N
IPR012340	NA-bd_OB-fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0003899	DNA-directed 5'-3' RNA polymerase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006351	DNA-templated transcription

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g.barbadense_cottongen_reftransV1_0097920, g.barbadense_cottongen_reftransV1_0097920 (contig) Gossypium barbadense

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