g.barbadense_cottongen_reftransV1_0097856, g.barbadense_cottongen_reftransV1_0097856 (contig) Gossypium barbadense

Overview
Nameg.barbadense_cottongen_reftransV1_0097856
Unique Nameg.barbadense_cottongen_reftransV1_0097856
Typecontig
OrganismGossypium barbadense (Sea Island cotton)
Sequence length2097
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
At06chromosomeg.barbadense_cottongen_reftransV1_0097856:2..2097 .
At06:94823673..94825820 -
Homology
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BLAST of g.barbadense_cottongen_reftransV1_0097856 vs. ExPASy Swiss-Prot
Match: SRC30_ARATH (Serine/arginine-rich SC35-like splicing factor SCL30 OS=Arabidopsis thaliana GN=SCL30 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 3.469e-16
Identity = 40/54 (74.07%), Postives = 45/54 (83.33%), Query Frame = 1 
Query: 1528 PRGFAFVQFVDSYDAAEAQWRMNGKIFGGREISVVVAAESRKRPEEMRHKARQR 1689
            PRGFAFV+FVD+YDA EAQ  MN + F GREI+VVVA+ESRKRPEEMR K R R
Sbjct:   87 PRGFAFVEFVDAYDAGEAQRSMNRRSFAGREITVVVASESRKRPEEMRVKTRTR 140

HSP 2 Score: 73.1738 bits (178), Expect = 6.772e-13
Identity = 33/37 (89.19%), Postives = 35/37 (94.59%), Query Frame = 1 
Query:   70 LLVRNIPLDCRPEELRIPFERFGLVRDVYIPKDYYTG 180
            LLVRNIPLDCRPEELR PFERFG VRDVYIP+DYY+G
Sbjct:   49 LLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSG 85
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BLAST of g.barbadense_cottongen_reftransV1_0097856 vs. ExPASy Swiss-Prot
Match: SL30A_ARATH (Serine/arginine-rich SC35-like splicing factor SCL30A OS=Arabidopsis thaliana GN=SCL30A PE=1 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 6.778e-10
Identity = 29/52 (55.77%), Postives = 40/52 (76.92%), Query Frame = 1 
Query: 1528 PRGFAFVQFVDSYDAAEAQWRMNGKIFGGREISVVVAAESRKRPEEMRHKAR 1683
            PRGF F+QF+D  DAAEA+ +M+G +  GRE++VV A E+RK+P EMR + R
Sbjct:   77 PRGFGFIQFMDPADAAEAKHQMDGYLLLGRELTVVFAEENRKKPTEMRTRDR 128

HSP 2 Score: 60.077 bits (144), Expect = 1.588e-8
Identity = 26/38 (68.42%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:   67 SLLVRNIPLDCRPEELRIPFERFGLVRDVYIPKDYYTG 180
            SLLVRN+  DCR E+LR PFE+FG V+D+Y+P+DYYTG
Sbjct:   38 SLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTG 75
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BLAST of g.barbadense_cottongen_reftransV1_0097856 vs. ExPASy Swiss-Prot
Match: SRC28_ARATH (Serine/arginine-rich SC35-like splicing factor SCL28 OS=Arabidopsis thaliana GN=SCL28 PE=1 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 1.044e-9
Identity = 29/48 (60.42%), Postives = 37/48 (77.08%), Query Frame = 1 
Query: 1528 PRGFAFVQFVDSYDAAEAQWRMNGKIFGGREISVVVAAESRKRPEEMR 1671
            PRGF FV++  + DAAEA  RMN K+ GGREI++V A E+RK P+EMR
Sbjct:   87 PRGFGFVKYRYAEDAAEAMKRMNHKVIGGREIAIVFAEENRKTPQEMR 134

HSP 2 Score: 57.7658 bits (138), Expect = 6.013e-8
Identity = 23/38 (60.53%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:   67 SLLVRNIPLDCRPEELRIPFERFGLVRDVYIPKDYYTG 180
             LL+RN+PLD RP +LR  FERFG ++D+Y+P++YYTG
Sbjct:   48 GLLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTG 85
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BLAST of g.barbadense_cottongen_reftransV1_0097856 vs. ExPASy Swiss-Prot
Match: SRC33_ARATH (Serine/arginine-rich SC35-like splicing factor SCL33 OS=Arabidopsis thaliana GN=SCL33 PE=1 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 1.618e-8
Identity = 27/47 (57.45%), Postives = 36/47 (76.60%), Query Frame = 1 
Query: 1528 PRGFAFVQFVDSYDAAEAQWRMNGKIFGGREISVVVAAESRKRPEEM 1668
            PRGF FVQF+D  DAA+A+  M+G +  GRE++VV A E+RK+P EM
Sbjct:   76 PRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFAEENRKKPTEM 122

HSP 2 Score: 56.225 bits (134), Expect = 3.211e-7
Identity = 25/38 (65.79%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:   67 SLLVRNIPLDCRPEELRIPFERFGLVRDVYIPKDYYTG 180
            SLLVRN+  DCR E+LR  FE+FG V+D+Y+P+DYYTG
Sbjct:   37 SLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTG 74
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BLAST of g.barbadense_cottongen_reftransV1_0097856 vs. ExPASy TrEMBL
Match: A0A067G0R9_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0434431mg PE=4 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.028e-16
Identity = 39/44 (88.64%), Postives = 43/44 (97.73%), Query Frame = 1 
Query:   49 REQNNGSLLVRNIPLDCRPEELRIPFERFGLVRDVYIPKDYYTG 180
            +EQN+GSLLVRNIPLDCRPEELR PFERFG+VRDVY+PKDYYTG
Sbjct:   57 KEQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTG 100

HSP 2 Score: 87.8113 bits (216), Expect = 2.524e-16
Identity = 42/52 (80.77%), Postives = 45/52 (86.54%), Query Frame = 1 
Query: 1528 PRGFAFVQFVDSYDAAEAQWRMNGKIFGGREISVVVAAESRKRPEEMRHKAR 1683
            PRGFAFVQFVD Y+AAEAQ  MNGK F GREISVV+AAESRKRPEEMR + R
Sbjct:  102 PRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVLAAESRKRPEEMRQRHR 153
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BLAST of g.barbadense_cottongen_reftransV1_0097856 vs. ExPASy TrEMBL
Match: U5TZH6_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.271e-16
Identity = 42/54 (77.78%), Postives = 47/54 (87.04%), Query Frame = 1 
Query: 1528 PRGFAFVQFVDSYDAAEAQWRMNGKIFGGREISVVVAAESRKRPEEMRHKARQR 1689
            PRGFAFVQFVD YDA+EAQ+ MN +IF GREISVVVA E+RKRPEEMRH+ R R
Sbjct:   79 PRGFAFVQFVDPYDASEAQYHMNRQIFAGREISVVVAEETRKRPEEMRHRTRAR 132

HSP 2 Score: 83.1889 bits (204), Expect = 3.183e-14
Identity = 37/43 (86.05%), Postives = 41/43 (95.35%), Query Frame = 1 
Query:   52 EQNNGSLLVRNIPLDCRPEELRIPFERFGLVRDVYIPKDYYTG 180
            + +NGSLLVRNIPLDCRPEELR+PFERFG VRDVYIPKDYY+G
Sbjct:   35 DTSNGSLLVRNIPLDCRPEELRVPFERFGPVRDVYIPKDYYSG 77
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0097856 vs. ExPASy TrEMBL
Match: A0A059A8L7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J00004 PE=4 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.994e-16
Identity = 40/56 (71.43%), Postives = 49/56 (87.50%), Query Frame = 1 
Query: 1519 CRAPRGFAFVQFVDSYDAAEAQWRMNGKIFGGREISVVVAAESRKRPEEMRHKARQ 1686
            CR PRGFAFV+FVD YDAA+AQ+ M+G+ F GR+ISVVVAAESRKRPE+MR + R+
Sbjct:   59 CRQPRGFAFVEFVDPYDAADAQYHMDGQNFAGRKISVVVAAESRKRPEDMRRRTRR 114
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BLAST of g.barbadense_cottongen_reftransV1_0097856 vs. ExPASy TrEMBL
Match: A0A078EP52_BRANA (BnaC04g25450D protein OS=Brassica napus GN=BnaC04g25450D PE=4 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 6.769e-16
Identity = 42/54 (77.78%), Postives = 47/54 (87.04%), Query Frame = 1 
Query: 1528 PRGFAFVQFVDSYDAAEAQWRMNGKIFGGREISVVVAAESRKRPEEMRHKARQR 1689
            PRGFAFV+FVD+YDA EAQ  MN +IFGGREI+VVVA+ESRKRPEEMR K R R
Sbjct:   83 PRGFAFVEFVDAYDAGEAQRSMNRRIFGGREITVVVASESRKRPEEMRVKTRTR 136

HSP 2 Score: 75.0998 bits (183), Expect = 1.305e-11
Identity = 33/37 (89.19%), Postives = 36/37 (97.30%), Query Frame = 1 
Query:   70 LLVRNIPLDCRPEELRIPFERFGLVRDVYIPKDYYTG 180
            LLVRNIPLDCRPEELR+PFERFG VRDVYIP+DYY+G
Sbjct:   45 LLVRNIPLDCRPEELRVPFERFGPVRDVYIPRDYYSG 81
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0097856 vs. ExPASy TrEMBL
Match: M4DE22_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra014741 PE=4 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 6.865e-16
Identity = 42/54 (77.78%), Postives = 47/54 (87.04%), Query Frame = 1 
Query: 1528 PRGFAFVQFVDSYDAAEAQWRMNGKIFGGREISVVVAAESRKRPEEMRHKARQR 1689
            PRGFAFV+FVD+YDA EAQ  MN +IFGGREI+VVVA+ESRKRPEEMR K R R
Sbjct:  102 PRGFAFVEFVDAYDAGEAQRSMNRRIFGGREITVVVASESRKRPEEMRVKTRTR 155

HSP 2 Score: 75.485 bits (184), Expect = 1.289e-11
Identity = 33/37 (89.19%), Postives = 36/37 (97.30%), Query Frame = 1 
Query:   70 LLVRNIPLDCRPEELRIPFERFGLVRDVYIPKDYYTG 180
            LLVRNIPLDCRPEELR+PFERFG VRDVYIP+DYY+G
Sbjct:   64 LLVRNIPLDCRPEELRVPFERFGPVRDVYIPRDYYSG 100
The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0097856 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 4
Match NameE-valueIdentityDescription
SRC30_ARATH3.469e-1674.07Serine/arginine-rich SC35-like splicing factor SCL... [more]
SL30A_ARATH6.778e-1055.77Serine/arginine-rich SC35-like splicing factor SCL... [more]
SRC28_ARATH1.044e-960.42Serine/arginine-rich SC35-like splicing factor SCL... [more]
SRC33_ARATH1.618e-857.45Serine/arginine-rich SC35-like splicing factor SCL... [more]
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BLAST of g.barbadense_cottongen_reftransV1_0097856 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A067G0R9_CITSI2.028e-1688.64Uncharacterized protein (Fragment) OS=Citrus sinen... [more]
U5TZH6_PHAVU2.271e-1677.78Uncharacterized protein OS=Phaseolus vulgaris PE=2... [more]
A0A059A8L7_EUCGR2.994e-1671.43Uncharacterized protein OS=Eucalyptus grandis GN=E... [more]
A0A078EP52_BRANA6.769e-1677.78BnaC04g25450D protein OS=Brassica napus GN=BnaC04g... [more]
M4DE22_BRARP6.865e-1677.78Uncharacterized protein OS=Brassica rapa subsp. pe... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 31..94
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..11
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..30

Sequences
The following sequences are available for this feature:

contig sequence

>g.barbadense_cottongen_reftransV1_0097856 ID=g.barbadense_cottongen_reftransV1_0097856; Name=g.barbadense_cottongen_reftransV1_0097856; organism=Gossypium barbadense; type=contig; length=2097bp
GGTGGTGGCGGCGGAGGCGGCGGTGGTGAAGGTGGGTATGGGAGAAGGAG
GGAGCAGAATAATGGAAGCCTTTTGGTTAGAAACATTCCTTTGGATTGCA
GACCTGAAGAACTTCGAATTCCATTCGAGAGATTCGGACTTGTTCGAGAT
GTGTATATTCCGAAAGATTACTATACAGGGTTTGTATTTCATTCTTCTTT
GCATTGTTCTAATGGAAGTTTATTCTTTGTAGTTTATGATTGTTTAAGGC
ATCTTAGGTTATGTCAGTTTAGTTTAATCCAGATTAAGCACGAACTCCAT
GGTTTTTTTTAGTCGAAGCTCAAGATTGTTGGTTTAGAAAATTTGATATT
CAACTCCCTGCCACAACTGGTGTAACATTCATTCTTTGTAGTTTATGTTT
GTTTTAAGGCATTTAGGTTATGTTTGGTTTAGTTTTATTGGGATTAAACA
CGAGCTTCATGTTTTTTTCTCTTCTGTCAAACCCAAGTTGGTTGGTTCGG
AAAATTTGATAATCAGCTCCTCGCCATACTTGGTAAAACATTTATGCATA
ACCCGACCATAAACTGATTGTCCTTTTCTTTTTTAGCAATTGCTAGCTAT
AAAAACGGCAATTTGTGGTATAAATGGATGGTTTTATGAAGTTTTGTGAT
AGGTGGCCATCTACTTTTCTGTATTCTAGCGTTACATTTTATGTCATTTG
TACGCTTCCTTTGAATTGCTTTTCCTGCTATCTCATAAAACGGGTTGACC
AGGCCAAAAACTGCTGAGATTGTTCTCATTTTTTATATTGAATGAGAAAT
CGGAGCCGACTTTTCTCTATCTTTGGCCATTGCTAAAACTACCATAGCTC
ACCGTGTACTGTCTTTTTCTTATTCTCCTCTTAGATCTTTAGTCATTGTA
TGGTCAGTACATATAAACAAAGTTAATTCCTTTGGATTGCTTTTCGTGCT
ATTTCTTAAAACACTCGTGTTCCTTTTCTTTTCTTTTTTTTAACCTGGAG
TGAATTCAATTTTGAACTGGTTTGTCAGGGGGTATATTGGTTTGAAGTAA
AAAACAAGCCGAAGCCCCACATTTGATGAATCCGAGGATTTTACGAGTAA
TGATCATATGAAGAATGTTCCTTTATGAAGCGAAACTATATAATTACACA
ATCAAATAGAGGTTTTTTTTGAGGAAGAAGATTGATTCACGAGACCCCGA
CCAATTGAGGACTACTTGAAGAGATATTTAGTTAGAGGAAAATTGTTGAT
ATTGAGTGCTTCTTATATTTTCAAGCATGTGAAGATTTTTCGACTCACTT
GCTCCTTTTGAAGTTGCCTTTGATATTGAATATTAAGGGAAAAGGTCAGC
CACTAAGCCCGTTTTTATGTAAATTTGGACCACATATGGAGTCATATTTG
GATGTGAAGTGTACAAAGTGATGGCAATGTAGAAGTAACATTACATTCTA
GTTCCGACATCCCCGTCCCATCTTGTTGTTAACTCGCATCCGTAAGTGAA
GGCTAGCTGTATGCTTTCTGCAGGGCTCCTCGAGGGTTTGCGTTTGTGCA
GTTTGTCGATTCTTATGATGCTGCCGAAGCTCAATGGCGCATGAATGGGA
AGATATTTGGTGGGAGAGAGATATCTGTCGTTGTTGCTGCGGAATCAAGG
AAAAGGCCAGAGGAGATGCGGCATAAAGCAAGGCAAAGGTAATCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAAGTATTCAGTTTTTTGTTA
TTTTACTTACATTTGCTTGGAGATTTATATGGCATGTAATTCTCTAGAGG
ACCATCGGGATACGGGGGACGATCATCTTATTATGGTACGTTATTACGGA
CATTAAATTCTGTTTTCATAGCATCCTTGTTAGATACATATCCATATCTG
ACACTCACTTCCGGGCCCAAGTGTGGTTAAATGGGTATTTTGCTTCAGAT
ATATGCAAATTATCATTCGTTTATTTTTTCCGCTATGTGATAGTAAACTA
ATTCGTTGCGGTTCCTTACACGATGTGTTAGGGCGTTCCCGGTCTCGTTC
AGCATCTCCAACGCGCTCTCCTCGCCGTCCTTCAGGTTCTAGAGGCC
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