g.barbadense_cottongen_reftransV1_0097856, g.barbadense_cottongen_reftransV1_0097856 (contig) Gossypium barbadense
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0097856 vs. ExPASy Swiss-Prot
Match: SRC30_ARATH (Serine/arginine-rich SC35-like splicing factor SCL30 OS=Arabidopsis thaliana GN=SCL30 PE=1 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 3.469e-16 Identity = 40/54 (74.07%), Postives = 45/54 (83.33%), Query Frame = 1 Query: 1528 PRGFAFVQFVDSYDAAEAQWRMNGKIFGGREISVVVAAESRKRPEEMRHKARQR 1689 PRGFAFV+FVD+YDA EAQ MN + F GREI+VVVA+ESRKRPEEMR K R R Sbjct: 87 PRGFAFVEFVDAYDAGEAQRSMNRRSFAGREITVVVASESRKRPEEMRVKTRTR 140 HSP 2 Score: 73.1738 bits (178), Expect = 6.772e-13 Identity = 33/37 (89.19%), Postives = 35/37 (94.59%), Query Frame = 1 Query: 70 LLVRNIPLDCRPEELRIPFERFGLVRDVYIPKDYYTG 180 LLVRNIPLDCRPEELR PFERFG VRDVYIP+DYY+G Sbjct: 49 LLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSG 85
BLAST of g.barbadense_cottongen_reftransV1_0097856 vs. ExPASy Swiss-Prot
Match: SL30A_ARATH (Serine/arginine-rich SC35-like splicing factor SCL30A OS=Arabidopsis thaliana GN=SCL30A PE=1 SV=1) HSP 1 Score: 63.929 bits (154), Expect = 6.778e-10 Identity = 29/52 (55.77%), Postives = 40/52 (76.92%), Query Frame = 1 Query: 1528 PRGFAFVQFVDSYDAAEAQWRMNGKIFGGREISVVVAAESRKRPEEMRHKAR 1683 PRGF F+QF+D DAAEA+ +M+G + GRE++VV A E+RK+P EMR + R Sbjct: 77 PRGFGFIQFMDPADAAEAKHQMDGYLLLGRELTVVFAEENRKKPTEMRTRDR 128 HSP 2 Score: 60.077 bits (144), Expect = 1.588e-8 Identity = 26/38 (68.42%), Postives = 33/38 (86.84%), Query Frame = 1 Query: 67 SLLVRNIPLDCRPEELRIPFERFGLVRDVYIPKDYYTG 180 SLLVRN+ DCR E+LR PFE+FG V+D+Y+P+DYYTG Sbjct: 38 SLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTG 75
BLAST of g.barbadense_cottongen_reftransV1_0097856 vs. ExPASy Swiss-Prot
Match: SRC28_ARATH (Serine/arginine-rich SC35-like splicing factor SCL28 OS=Arabidopsis thaliana GN=SCL28 PE=1 SV=1) HSP 1 Score: 63.1586 bits (152), Expect = 1.044e-9 Identity = 29/48 (60.42%), Postives = 37/48 (77.08%), Query Frame = 1 Query: 1528 PRGFAFVQFVDSYDAAEAQWRMNGKIFGGREISVVVAAESRKRPEEMR 1671 PRGF FV++ + DAAEA RMN K+ GGREI++V A E+RK P+EMR Sbjct: 87 PRGFGFVKYRYAEDAAEAMKRMNHKVIGGREIAIVFAEENRKTPQEMR 134 HSP 2 Score: 57.7658 bits (138), Expect = 6.013e-8 Identity = 23/38 (60.53%), Postives = 32/38 (84.21%), Query Frame = 1 Query: 67 SLLVRNIPLDCRPEELRIPFERFGLVRDVYIPKDYYTG 180 LL+RN+PLD RP +LR FERFG ++D+Y+P++YYTG Sbjct: 48 GLLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTG 85
BLAST of g.barbadense_cottongen_reftransV1_0097856 vs. ExPASy Swiss-Prot
Match: SRC33_ARATH (Serine/arginine-rich SC35-like splicing factor SCL33 OS=Arabidopsis thaliana GN=SCL33 PE=1 SV=1) HSP 1 Score: 60.077 bits (144), Expect = 1.618e-8 Identity = 27/47 (57.45%), Postives = 36/47 (76.60%), Query Frame = 1 Query: 1528 PRGFAFVQFVDSYDAAEAQWRMNGKIFGGREISVVVAAESRKRPEEM 1668 PRGF FVQF+D DAA+A+ M+G + GRE++VV A E+RK+P EM Sbjct: 76 PRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFAEENRKKPTEM 122 HSP 2 Score: 56.225 bits (134), Expect = 3.211e-7 Identity = 25/38 (65.79%), Postives = 32/38 (84.21%), Query Frame = 1 Query: 67 SLLVRNIPLDCRPEELRIPFERFGLVRDVYIPKDYYTG 180 SLLVRN+ DCR E+LR FE+FG V+D+Y+P+DYYTG Sbjct: 37 SLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTG 74
BLAST of g.barbadense_cottongen_reftransV1_0097856 vs. ExPASy TrEMBL
Match: W1PIQ6_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00012p00222900 PE=4 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 6.332e-18 Identity = 42/54 (77.78%), Postives = 49/54 (90.74%), Query Frame = 1 Query: 1528 PRGFAFVQFVDSYDAAEAQWRMNGKIFGGREISVVVAAESRKRPEEMRHKARQR 1689 PRGFAFVQFVD DAAEAQ+ MNG++FGGREI+VVVAAE+RKRPEEMR++ R R Sbjct: 75 PRGFAFVQFVDPSDAAEAQYHMNGQMFGGREITVVVAAETRKRPEEMRNRLRVR 128 HSP 2 Score: 74.3294 bits (181), Expect = 7.275e-12 Identity = 31/44 (70.45%), Postives = 40/44 (90.91%), Query Frame = 1 Query: 49 REQNNGSLLVRNIPLDCRPEELRIPFERFGLVRDVYIPKDYYTG 180 +E N GSLLVRNIPLDCRP++LR+PFER+G +RDVY+P +Y+TG Sbjct: 30 KENNKGSLLVRNIPLDCRPDDLRVPFERYGPLRDVYLPHNYHTG 73
BLAST of g.barbadense_cottongen_reftransV1_0097856 vs. ExPASy TrEMBL
Match: A0A068TUY2_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_4 OS=Coffea canephora GN=GSCOC_T00029895001 PE=4 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 7.850e-18 Identity = 44/56 (78.57%), Postives = 50/56 (89.29%), Query Frame = 1 Query: 1516 FCRAPRGFAFVQFVDSYDAAEAQWRMNGKIFGGREISVVVAAESRKRPEEMRHKAR 1683 + PRGFAFVQFVD Y+AAEAQ++MNG+IF GREISVVVAAE+RKRPEEMR KAR Sbjct: 77 YTGEPRGFAFVQFVDPYEAAEAQYQMNGQIFAGREISVVVAAETRKRPEEMRRKAR 132 HSP 2 Score: 90.5077 bits (223), Expect = 1.403e-16 Identity = 40/44 (90.91%), Postives = 44/44 (100.00%), Query Frame = 1 Query: 49 REQNNGSLLVRNIPLDCRPEELRIPFERFGLVRDVYIPKDYYTG 180 +EQN+GSLLVRNIPLDCRPEELR+PFERFGLVRDVY+PKDYYTG Sbjct: 36 KEQNHGSLLVRNIPLDCRPEELRVPFERFGLVRDVYLPKDYYTG 79
BLAST of g.barbadense_cottongen_reftransV1_0097856 vs. ExPASy TrEMBL
Match: W1PD81_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00012p00222390 PE=4 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 2.122e-17 Identity = 42/54 (77.78%), Postives = 51/54 (94.44%), Query Frame = 1 Query: 1528 PRGFAFVQFVDSYDAAEAQWRMNGKIFGGREISVVVAAESRKRPEEMRHKARQR 1689 PRGFAFVQFVD +DAAEAQ+ MNG++FGGREI+VV+AAE+RKRPEEMR++AR R Sbjct: 79 PRGFAFVQFVDPFDAAEAQYHMNGQMFGGREITVVLAAETRKRPEEMRNRARVR 132 HSP 2 Score: 82.8037 bits (203), Expect = 4.878e-14 Identity = 35/44 (79.55%), Postives = 42/44 (95.45%), Query Frame = 1 Query: 49 REQNNGSLLVRNIPLDCRPEELRIPFERFGLVRDVYIPKDYYTG 180 +E NNGSLLVRNIPLDCRP++LR+PFER+G +RDVY+PKDYYTG Sbjct: 34 KESNNGSLLVRNIPLDCRPDDLRVPFERYGPLRDVYLPKDYYTG 77
BLAST of g.barbadense_cottongen_reftransV1_0097856 vs. ExPASy TrEMBL
Match: B9T4I1_RICCO (Serine/arginine rich splicing factor, putative OS=Ricinus communis GN=RCOM_0000930 PE=4 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 3.124e-17 Identity = 43/52 (82.69%), Postives = 48/52 (92.31%), Query Frame = 1 Query: 1528 PRGFAFVQFVDSYDAAEAQWRMNGKIFGGREISVVVAAESRKRPEEMRHKAR 1683 PRGFAFVQFVD+YDA EAQ RMNG+IF GREISVVVAAE+RKRPEEMR ++R Sbjct: 83 PRGFAFVQFVDTYDAMEAQHRMNGQIFAGREISVVVAAETRKRPEEMRQRSR 134 HSP 2 Score: 89.3521 bits (220), Expect = 3.511e-16 Identity = 40/44 (90.91%), Postives = 43/44 (97.73%), Query Frame = 1 Query: 49 REQNNGSLLVRNIPLDCRPEELRIPFERFGLVRDVYIPKDYYTG 180 +EQN+GSLLVRNIPLDCRPEELR PFERFG+VRDVYIPKDYYTG Sbjct: 38 KEQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYIPKDYYTG 81
BLAST of g.barbadense_cottongen_reftransV1_0097856 vs. ExPASy TrEMBL
Match: B9HTI2_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s21070g PE=4 SV=2) HSP 1 Score: 91.2781 bits (225), Expect = 7.371e-17 Identity = 43/54 (79.63%), Postives = 49/54 (90.74%), Query Frame = 1 Query: 1528 PRGFAFVQFVDSYDAAEAQWRMNGKIFGGREISVVVAAESRKRPEEMRHKARQR 1689 PRGFAFVQFVD Y+A EAQ RMNG+IF GR+ISVV+AAE+RKRPEEMRH+AR R Sbjct: 83 PRGFAFVQFVDPYEAMEAQHRMNGQIFAGRQISVVLAAETRKRPEEMRHRARVR 136 HSP 2 Score: 85.5001 bits (210), Expect = 6.500e-15 Identity = 38/44 (86.36%), Postives = 43/44 (97.73%), Query Frame = 1 Query: 49 REQNNGSLLVRNIPLDCRPEELRIPFERFGLVRDVYIPKDYYTG 180 ++QN+GSLLVRNIPLDCRP+ELR PFERFG+VRDVYIPKDYYTG Sbjct: 38 KDQNSGSLLVRNIPLDCRPDELRGPFERFGVVRDVYIPKDYYTG 81
BLAST of g.barbadense_cottongen_reftransV1_0097856 vs. ExPASy TrEMBL
Match: D7TLV0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0019g01060 PE=4 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 1.194e-16 Identity = 43/58 (74.14%), Postives = 50/58 (86.21%), Query Frame = 1 Query: 1516 FCRAPRGFAFVQFVDSYDAAEAQWRMNGKIFGGREISVVVAAESRKRPEEMRHKARQR 1689 + PRGFAFVQFVD Y+A+EAQ+ MNG+IF GREISVVVAAE+RKRPEEMR +AR R Sbjct: 153 YTGEPRGFAFVQFVDPYEASEAQYHMNGQIFAGREISVVVAAETRKRPEEMRTRARVR 210 HSP 2 Score: 86.6557 bits (213), Expect = 5.370e-15 Identity = 38/44 (86.36%), Postives = 44/44 (100.00%), Query Frame = 1 Query: 49 REQNNGSLLVRNIPLDCRPEELRIPFERFGLVRDVYIPKDYYTG 180 +EQN+GSLLVRNIPL+CRPE+LR+PFERFGLVRDVY+PKDYYTG Sbjct: 112 KEQNHGSLLVRNIPLNCRPEDLRVPFERFGLVRDVYLPKDYYTG 155
BLAST of g.barbadense_cottongen_reftransV1_0097856 vs. ExPASy TrEMBL
Match: A0A0D9YPZ4_9ORYZ (Uncharacterized protein OS=Oryza glumipatula PE=4 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.306e-16 Identity = 41/57 (71.93%), Postives = 49/57 (85.96%), Query Frame = 1 Query: 1519 CRAPRGFAFVQFVDSYDAAEAQWRMNGKIFGGREISVVVAAESRKRPEEMRHKARQR 1689 CR PRGFAFV+FVD YDA+EAQ+ MN ++ GREI+VV+AAESRKRPEEMR +AR R Sbjct: 48 CREPRGFAFVEFVDPYDASEAQYHMNRQVVFGREITVVLAAESRKRPEEMRSRARVR 104
BLAST of g.barbadense_cottongen_reftransV1_0097856 vs. ExPASy TrEMBL
Match: T2DP81_PHAVU (Splicing factor arginine/serine-rich 13A OS=Phaseolus vulgaris PE=2 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 1.470e-16 Identity = 42/54 (77.78%), Postives = 47/54 (87.04%), Query Frame = 1 Query: 1528 PRGFAFVQFVDSYDAAEAQWRMNGKIFGGREISVVVAAESRKRPEEMRHKARQR 1689 PRGFAFVQFVD YDA+EAQ+ MN +IF GREISVVVA E+RKRPEEMRH+ R R Sbjct: 79 PRGFAFVQFVDPYDASEAQYHMNRQIFAGREISVVVAEETRKRPEEMRHRTRAR 132 HSP 2 Score: 83.9593 bits (206), Expect = 1.747e-14 Identity = 37/43 (86.05%), Postives = 41/43 (95.35%), Query Frame = 1 Query: 52 EQNNGSLLVRNIPLDCRPEELRIPFERFGLVRDVYIPKDYYTG 180 + +NGSLLVRNIPLDCRPEELR+PFERFG VRDVYIPKDYY+G Sbjct: 35 DTSNGSLLVRNIPLDCRPEELRVPFERFGPVRDVYIPKDYYSG 77
BLAST of g.barbadense_cottongen_reftransV1_0097856 vs. ExPASy TrEMBL
Match: V7BBL5_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_008G232900g PE=4 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 1.566e-16 Identity = 42/54 (77.78%), Postives = 47/54 (87.04%), Query Frame = 1 Query: 1528 PRGFAFVQFVDSYDAAEAQWRMNGKIFGGREISVVVAAESRKRPEEMRHKARQR 1689 PRGFAFVQFVD YDA+EAQ+ MN +IF GREISVVVA E+RKRPEEMRH+ R R Sbjct: 79 PRGFAFVQFVDPYDASEAQYHMNRQIFAGREISVVVAEETRKRPEEMRHRTRAR 132 HSP 2 Score: 82.4185 bits (202), Expect = 5.254e-14 Identity = 37/43 (86.05%), Postives = 40/43 (93.02%), Query Frame = 1 Query: 52 EQNNGSLLVRNIPLDCRPEELRIPFERFGLVRDVYIPKDYYTG 180 + +NGSLLVRNIPLDCRPEELR PFERFG VRDVYIPKDYY+G Sbjct: 35 DTSNGSLLVRNIPLDCRPEELRFPFERFGPVRDVYIPKDYYSG 77
BLAST of g.barbadense_cottongen_reftransV1_0097856 vs. ExPASy TrEMBL
Match: W9SPT4_9ROSA (Serine/arginine-rich splicing factor 12 OS=Morus notabilis GN=L484_011419 PE=4 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 1.842e-16 Identity = 40/44 (90.91%), Postives = 44/44 (100.00%), Query Frame = 1 Query: 49 REQNNGSLLVRNIPLDCRPEELRIPFERFGLVRDVYIPKDYYTG 180 +EQN+GSLLVRNIPLDCRPEELR+PFERFG+VRDVYIPKDYYTG Sbjct: 164 KEQNHGSLLVRNIPLDCRPEELRVPFERFGVVRDVYIPKDYYTG 207 HSP 2 Score: 73.1738 bits (178), Expect = 1.844e-10 Identity = 33/40 (82.50%), Postives = 37/40 (92.50%), Query Frame = 1 Query: 1528 PRGFAFVQFVDSYDAAEAQWRMNGKIFGGREISVVVAAES 1647 PRGFAFVQFVDSY+A+EAQ+ MNGK F GREISVVVAAE+ Sbjct: 225 PRGFAFVQFVDSYEASEAQYHMNGKTFAGREISVVVAAEN 264 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0097856 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 4
BLAST of g.barbadense_cottongen_reftransV1_0097856 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0097856 ID=g.barbadense_cottongen_reftransV1_0097856; Name=g.barbadense_cottongen_reftransV1_0097856; organism=Gossypium barbadense; type=contig; length=2097bpback to top |