g.barbadense_cottongen_reftransV1_0097852, g.barbadense_cottongen_reftransV1_0097852 (contig) Gossypium barbadense
Overview
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0097852 vs. ExPASy Swiss-Prot
Match: HEM4_ARATH (Uroporphyrinogen-III synthase, chloroplastic OS=Arabidopsis thaliana GN=UROS PE=2 SV=2) HSP 1 Score: 233.032 bits (593), Expect = 2.160e-66 Identity = 112/161 (69.57%), Postives = 134/161 (83.23%), Query Frame = -1 Query: 1831 PKVVVTRERGKNTKLIDALAEHGINCLELPLIQHSQGPDSDRLVSVLSETAFDWIVITSPEAGSVFLEAWKAAGTPNVRIGVVGAGTASIFENLNQSSKQSLHVAFAPSKATGKVLASELPMDGNERCTVLYPASAKASNEIEEGLSHRGFQVLRLNTYTT 2313 P+VVVTRERGKN ++I AL ++GI+ LELPLIQH++GPD DRL SVL++ +FDWI+ITSPEAGSVFLEAWK A +P V+IGVVGAGTA +FE +S+ LHVAF PSKATGKVLASELP +R +VLYPAS KA N+I EGLS RGF+V+RLNTYTT Sbjct: 65 PQVVVTRERGKNNQIIKALEKNGISSLELPLIQHARGPDFDRLASVLNDKSFDWIIITSPEAGSVFLEAWKTASSPEVQIGVVGAGTARVFEEAMKSADGLLHVAFTPSKATGKVLASELPEKVGKRSSVLYPASLKAGNDIVEGLSKRGFEVVRLNTYTT 225 HSP 2 Score: 76.2554 bits (186), Expect = 2.453e-13 Identity = 31/46 (67.39%), Postives = 40/46 (86.96%), Query Frame = -1 Query: 940 RSWVNLISEPDSWSNAVACIGETTASAAKRLGLRNVYFPMQPGLDG 1077 R+W++LI + WSN VACIGETTASAA+RLGL+NVY+P +PGL+G Sbjct: 254 RAWLHLIQNEEQWSNYVACIGETTASAARRLGLKNVYYPEKPGLEG 299
BLAST of g.barbadense_cottongen_reftransV1_0097852 vs. ExPASy Swiss-Prot
Match: HEM4_ORYSJ (Uroporphyrinogen-III synthase, chloroplastic OS=Oryza sativa subsp. japonica GN=UROS PE=2 SV=1) HSP 1 Score: 219.164 bits (557), Expect = 7.760e-62 Identity = 106/161 (65.84%), Postives = 123/161 (76.40%), Query Frame = -1 Query: 1831 PKVVVTRERGKNTKLIDALAEHGINCLELPLIQHSQGPDSDRLVSVLSETAFDWIVITSPEAGSVFLEAWKAAGTPNVRIGVVGAGTASIFENLNQSSKQSLHVAFAPSKATGKVLASELPMDGNERCTVLYPASAKASNEIEEGLSHRGFQVLRLNTYTT 2313 P VVVTRERGKN KLI AL +H + LELPLI+H +GPD+DRL +VL + FDWI ITSPEA +VFLE WKAAG P VRI VVGAGT +F+ + Q + SL VAF+PSKA GK LASELP C VLYPASAKA +EI+ GLS+RGF+V RLNTYTT Sbjct: 47 PDVVVTRERGKNAKLIAALEKHNVQSLELPLIKHVEGPDTDRLSAVLRDEKFDWITITSPEAAAVFLEGWKAAGNPKVRIAVVGAGTERVFDEVIQYNDGSLEVAFSPSKAMGKFLASELPRTTETTCKVLYPASAKAGHEIQNGLSNRGFEVTRLNTYTT 207 HSP 2 Score: 76.6406 bits (187), Expect = 1.391e-13 Identity = 30/46 (65.22%), Postives = 40/46 (86.96%), Query Frame = -1 Query: 940 RSWVNLISEPDSWSNAVACIGETTASAAKRLGLRNVYFPMQPGLDG 1077 R+W+NL S+ D+W NA+ACIGETTASAAK+ GL+++Y+P PGLDG Sbjct: 236 RAWLNLASQVDNWGNAIACIGETTASAAKKFGLKSIYYPTTPGLDG 281
BLAST of g.barbadense_cottongen_reftransV1_0097852 vs. ExPASy TrEMBL
Match: A0A022QFU1_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a010196mg PE=4 SV=1) HSP 1 Score: 265.388 bits (677), Expect = 2.444e-77 Identity = 128/165 (77.58%), Postives = 143/165 (86.67%), Query Frame = -1 Query: 1831 ASSNPKVVVTRERGKNTKLIDALAEHGINCLELPLIQHSQGPDSDRLVSVLSETAFDWIVITSPEAGSVFLEAWKAAGTPNVRIGVVGAGTASIFENLNQSSKQSLHVAFAPSKATGKVLASELPMDGNERCTVLYPASAKASNEIEEGLSHRGFQVLRLNTYTT 2325 +SSNPKVVVTRERGKN KLIDALA GI LELPLIQH++ PDSD+L SVL T+FDWI+ITSPEAG VFL+AWKAAGTP VR+GVVGAGTAS+FE L SKQSL+VAF+PSKA GKVLA+ELP DGN RCT LYPASAKA +EIEEGL+ RGF+V RLNTYTT Sbjct: 63 SSSNPKVVVTRERGKNGKLIDALATRGITSLELPLIQHTRLPDSDKLSSVLRSTSFDWIIITSPEAGVVFLDAWKAAGTPKVRVGVVGAGTASVFEKLQPPSKQSLNVAFSPSKAIGKVLAAELPNDGNGRCTALYPASAKAGHEIEEGLAKRGFEVTRLNTYTT 227
BLAST of g.barbadense_cottongen_reftransV1_0097852 vs. ExPASy TrEMBL
Match: A0A067L1M8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04315 PE=4 SV=1) HSP 1 Score: 268.085 bits (684), Expect = 2.498e-77 Identity = 132/162 (81.48%), Postives = 147/162 (90.74%), Query Frame = -1 Query: 1831 PKVVVTRERGKNTKLIDALAEHGINCLELPLIQHSQGPDSDRLVSVLS-ETAFDWIVITSPEAGSVFLEAWKAAGTPNVRIGVVGAGTASIFENLNQSSKQSLHVAFAPSKATGKVLASELPMDGNERCTVLYPASAKASNEIEEGLSHRGFQVLRLNTYTT 2313 PKVVVTRERGKN KLI+ALA+HGINCLELPLIQH++GPDSD+L SVLS +T+FDWIVITSPEAGSVFLEAWKAAG+PNV IGVVGAGTASIF + QSS Q L ++F PSKATGKVLASELP N+ CTVLYPASAKASNEIEEGLS+RGF+V+RLNTYTT Sbjct: 52 PKVVVTRERGKNGKLINALAKHGINCLELPLIQHTRGPDSDKLPSVLSTDTSFDWIVITSPEAGSVFLEAWKAAGSPNVNIGVVGAGTASIFNEVMQSSGQVLDISFTPSKATGKVLASELPKSENKTCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTT 213 HSP 2 Score: 81.6481 bits (200), Expect = 3.454e-13 Identity = 34/46 (73.91%), Postives = 42/46 (91.30%), Query Frame = -1 Query: 940 RSWVNLISEPDSWSNAVACIGETTASAAKRLGLRNVYFPMQPGLDG 1077 R+WVNLISE + W+N+VACIGETTASAA+RLGL+NVYFP+ P L+G Sbjct: 242 RAWVNLISESEQWNNSVACIGETTASAARRLGLKNVYFPVHPSLEG 287
BLAST of g.barbadense_cottongen_reftransV1_0097852 vs. ExPASy TrEMBL
Match: W9RWR9_9ROSA (Uroporphyrinogen-III synthase OS=Morus notabilis GN=L484_026089 PE=4 SV=1) HSP 1 Score: 263.462 bits (672), Expect = 1.161e-76 Identity = 128/163 (78.53%), Postives = 147/163 (90.18%), Query Frame = -1 Query: 1831 KVVVTRERGKNTKLIDALAEHGINCLELPLIQHSQGPDSDRLVSVLS---ETAFDWIVITSPEAGSVFLEAWKAAGTPNVRIGVVGAGTASIFENLNQSSKQSLHVAFAPSKATGKVLASELPMDGNERCTVLYPASAKASNEIEEGLSHRGFQVLRLNTYTT 2310 KVVVTRERGKN KL++ALA+HGI+CLELPLI+H++GPD DRL +VLS +TAFDWIVITSPEAGSVFLEAWKA+GTPNV+I VVGAGTASIF+ + QS KQSL VAF PSKATGKVLASELP + + +CTVLYPASAKASNEIE+GLS+RGF+V RLNTYTT Sbjct: 54 KVVVTRERGKNGKLVNALAKHGISCLELPLIKHTKGPDLDRLSTVLSADADTAFDWIVITSPEAGSVFLEAWKASGTPNVKIAVVGAGTASIFKEVMQSLKQSLDVAFVPSKATGKVLASELPKNSSTKCTVLYPASAKASNEIEDGLSNRGFEVTRLNTYTT 216
BLAST of g.barbadense_cottongen_reftransV1_0097852 vs. ExPASy TrEMBL
Match: A0A022QCN8_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a010196mg PE=4 SV=1) HSP 1 Score: 265.003 bits (676), Expect = 5.318e-76 Identity = 128/165 (77.58%), Postives = 143/165 (86.67%), Query Frame = -1 Query: 1831 ASSNPKVVVTRERGKNTKLIDALAEHGINCLELPLIQHSQGPDSDRLVSVLSETAFDWIVITSPEAGSVFLEAWKAAGTPNVRIGVVGAGTASIFENLNQSSKQSLHVAFAPSKATGKVLASELPMDGNERCTVLYPASAKASNEIEEGLSHRGFQVLRLNTYTT 2325 +SSNPKVVVTRERGKN KLIDALA GI LELPLIQH++ PDSD+L SVL T+FDWI+ITSPEAG VFL+AWKAAGTP VR+GVVGAGTAS+FE L SKQSL+VAF+PSKA GKVLA+ELP DGN RCT LYPASAKA +EIEEGL+ RGF+V RLNTYTT Sbjct: 63 SSSNPKVVVTRERGKNGKLIDALATRGITSLELPLIQHTRLPDSDKLSSVLRSTSFDWIIITSPEAGVVFLDAWKAAGTPKVRVGVVGAGTASVFEKLQPPSKQSLNVAFSPSKAIGKVLAAELPNDGNGRCTALYPASAKAGHEIEEGLAKRGFEVTRLNTYTT 227 HSP 2 Score: 71.633 bits (174), Expect = 7.251e-10 Identity = 29/46 (63.04%), Postives = 37/46 (80.43%), Query Frame = -1 Query: 940 RSWVNLISEPDSWSNAVACIGETTASAAKRLGLRNVYFPMQPGLDG 1077 R+W++LI E W NAVACIGETTA +AK+ GLRNVY+P PG++G Sbjct: 256 RAWISLIPETRKWDNAVACIGETTAVSAKKQGLRNVYYPENPGIEG 301
BLAST of g.barbadense_cottongen_reftransV1_0097852 vs. ExPASy TrEMBL
Match: W8TFM0_TOBAC (Uroporphyrinogen-III synthase OS=Nicotiana tabacum PE=2 SV=1) HSP 1 Score: 258.84 bits (660), Expect = 5.248e-74 Identity = 123/161 (76.40%), Postives = 138/161 (85.71%), Query Frame = -1 Query: 1831 PKVVVTRERGKNTKLIDALAEHGINCLELPLIQHSQGPDSDRLVSVLSETAFDWIVITSPEAGSVFLEAWKAAGTPNVRIGVVGAGTASIFENLNQSSKQSLHVAFAPSKATGKVLASELPMDGNERCTVLYPASAKASNEIEEGLSHRGFQVLRLNTYTT 2313 PKVVVTRERGKN KL+++LA HGI+CLELPLIQH PD RL SVLS+ FDWI+ITSPEAG VFL+AWKAAGTP+VR+GVVG GTASIF+ QSSKQ L VAF PSKATGKVLASELP +GN++CTVLYPASAKA +IEEGLS RGF+V RLNTYTT Sbjct: 51 PKVVVTRERGKNGKLMNSLARHGIDCLELPLIQHMHLPDLGRLTSVLSDATFDWIIITSPEAGKVFLDAWKAAGTPSVRVGVVGPGTASIFDEAVQSSKQYLDVAFTPSKATGKVLASELPKNGNDKCTVLYPASAKAGTDIEEGLSERGFEVTRLNTYTT 211 HSP 2 Score: 77.411 bits (189), Expect = 6.797e-12 Identity = 33/46 (71.74%), Postives = 36/46 (78.26%), Query Frame = -1 Query: 940 RSWVNLISEPDSWSNAVACIGETTASAAKRLGLRNVYFPMQPGLDG 1077 R W NLI W NAVACIGETTASAAKRLGLRN+Y+P PGL+G Sbjct: 240 RVWTNLIPASSQWDNAVACIGETTASAAKRLGLRNIYYPTSPGLEG 285 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0097852 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 2
BLAST of g.barbadense_cottongen_reftransV1_0097852 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0097852 ID=g.barbadense_cottongen_reftransV1_0097852; Name=g.barbadense_cottongen_reftransV1_0097852; organism=Gossypium barbadense; type=contig; length=3708bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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