g.barbadense_cottongen_reftransV1_0097852, g.barbadense_cottongen_reftransV1_0097852 (contig) Gossypium barbadense

Overview


Name	g.barbadense_cottongen_reftransV1_0097852
Unique Name	g.barbadense_cottongen_reftransV1_0097852
Type	contig
Organism	Gossypium barbadense (Sea Island cotton)
Sequence length	3708

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium barbadense CottonGen RefTrans V1	2016-11-01
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot	2016-11-01
InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1	2016-11-02
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL	2016-11-02

Homology

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BLAST of g.barbadense_cottongen_reftransV1_0097852 vs. ExPASy Swiss-Prot
Match: HEM4_ARATH (Uroporphyrinogen-III synthase, chloroplastic OS=Arabidopsis thaliana GN=UROS PE=2 SV=2)

HSP 1 Score: 233.032 bits (593), Expect = 2.160e-66
Identity = 112/161 (69.57%), Postives = 134/161 (83.23%), Query Frame = -1

Query: 1831 PKVVVTRERGKNTKLIDALAEHGINCLELPLIQHSQGPDSDRLVSVLSETAFDWIVITSPEAGSVFLEAWKAAGTPNVRIGVVGAGTASIFENLNQSSKQSLHVAFAPSKATGKVLASELPMDGNERCTVLYPASAKASNEIEEGLSHRGFQVLRLNTYTT 2313
            P+VVVTRERGKN ++I AL ++GI+ LELPLIQH++GPD DRL SVL++ +FDWI+ITSPEAGSVFLEAWK A +P V+IGVVGAGTA +FE   +S+   LHVAF PSKATGKVLASELP    +R +VLYPAS KA N+I EGLS RGF+V+RLNTYTT
Sbjct:   65 PQVVVTRERGKNNQIIKALEKNGISSLELPLIQHARGPDFDRLASVLNDKSFDWIIITSPEAGSVFLEAWKTASSPEVQIGVVGAGTARVFEEAMKSADGLLHVAFTPSKATGKVLASELPEKVGKRSSVLYPASLKAGNDIVEGLSKRGFEVVRLNTYTT 225

HSP 2 Score: 76.2554 bits (186), Expect = 2.453e-13
Identity = 31/46 (67.39%), Postives = 40/46 (86.96%), Query Frame = -1

Query:  940 RSWVNLISEPDSWSNAVACIGETTASAAKRLGLRNVYFPMQPGLDG 1077
            R+W++LI   + WSN VACIGETTASAA+RLGL+NVY+P +PGL+G
Sbjct:  254 RAWLHLIQNEEQWSNYVACIGETTASAARRLGLKNVYYPEKPGLEG 299

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BLAST of g.barbadense_cottongen_reftransV1_0097852 vs. ExPASy Swiss-Prot
Match: HEM4_ORYSJ (Uroporphyrinogen-III synthase, chloroplastic OS=Oryza sativa subsp. japonica GN=UROS PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 7.760e-62
Identity = 106/161 (65.84%), Postives = 123/161 (76.40%), Query Frame = -1

Query: 1831 PKVVVTRERGKNTKLIDALAEHGINCLELPLIQHSQGPDSDRLVSVLSETAFDWIVITSPEAGSVFLEAWKAAGTPNVRIGVVGAGTASIFENLNQSSKQSLHVAFAPSKATGKVLASELPMDGNERCTVLYPASAKASNEIEEGLSHRGFQVLRLNTYTT 2313
            P VVVTRERGKN KLI AL +H +  LELPLI+H +GPD+DRL +VL +  FDWI ITSPEA +VFLE WKAAG P VRI VVGAGT  +F+ + Q +  SL VAF+PSKA GK LASELP      C VLYPASAKA +EI+ GLS+RGF+V RLNTYTT
Sbjct:   47 PDVVVTRERGKNAKLIAALEKHNVQSLELPLIKHVEGPDTDRLSAVLRDEKFDWITITSPEAAAVFLEGWKAAGNPKVRIAVVGAGTERVFDEVIQYNDGSLEVAFSPSKAMGKFLASELPRTTETTCKVLYPASAKAGHEIQNGLSNRGFEVTRLNTYTT 207

HSP 2 Score: 76.6406 bits (187), Expect = 1.391e-13
Identity = 30/46 (65.22%), Postives = 40/46 (86.96%), Query Frame = -1

Query:  940 RSWVNLISEPDSWSNAVACIGETTASAAKRLGLRNVYFPMQPGLDG 1077
            R+W+NL S+ D+W NA+ACIGETTASAAK+ GL+++Y+P  PGLDG
Sbjct:  236 RAWLNLASQVDNWGNAIACIGETTASAAKKFGLKSIYYPTTPGLDG 281

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BLAST of g.barbadense_cottongen_reftransV1_0097852 vs. ExPASy TrEMBL
Match: V4V7I8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10001965mg PE=4 SV=1)

HSP 1 Score: 280.026 bits (715), Expect = 1.178e-81
Identity = 134/162 (82.72%), Postives = 150/162 (92.59%), Query Frame = -1

Query: 1831 NPKVVVTRERGKNTKLIDALAEHGINCLELPLIQHSQGPDSDRLVSVLSETAFDWIVITSPEAGSVFLEAWKAAGTPNVRIGVVGAGTASIFENLNQSSKQSLHVAFAPSKATGKVLASELPMDGNERCTVLYPASAKASNEIEEGLSHRGFQVLRLNTYTT 2316
            NPKVVVTRERGKN KLI ALA+H I+CLELPLIQH+QGPD+DRL SVL++T FDWI+ITSPEAGSVFLEAWK AGTPNVRIGVVGAGTASIFE + QSSK SL VAF+PSKATGK+LASELP +G ++CTVLYPASAKASNEIEEGLS+RGF+V+RLNTYTT
Sbjct:   53 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTT 214

HSP 2 Score: 85.1149 bits (209), Expect = 2.706e-14
Identity = 36/46 (78.26%), Postives = 42/46 (91.30%), Query Frame = -1

Query:  940 RSWVNLISEPDSWSNAVACIGETTASAAKRLGLRNVYFPMQPGLDG 1077
            RSWVNLIS+ + WSN+VACIGETTASAAKRLGL+NVY+P  PGL+G
Sbjct:  243 RSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYPTHPGLEG 288

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097852 vs. ExPASy TrEMBL
Match: A0A067H9K8_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0221282mg PE=4 SV=1)

HSP 1 Score: 277.33 bits (708), Expect = 3.636e-81
Identity = 134/163 (82.21%), Postives = 150/163 (92.02%), Query Frame = -1

Query: 1831 NPKVVVTRERGKNTKLIDALAEHGINCLELPLIQHSQGPDSDRLVSVL-SETAFDWIVITSPEAGSVFLEAWKAAGTPNVRIGVVGAGTASIFENLNQSSKQSLHVAFAPSKATGKVLASELPMDGNERCTVLYPASAKASNEIEEGLSHRGFQVLRLNTYTT 2316
            NPKVVVTRERGKN KLI ALA+H I+CLELPLIQH+QGPD+DRL SVL ++T FDWI+ITSPEAGSVFLEAWK AGTPNVRIGVVGAGTASIFE + QSSK SL VAF+PSKATGK+LASELP +G ++CTVLYPASAKASNEIEEGLS+RGF+V+RLNTYTT
Sbjct:   50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTT 212

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BLAST of g.barbadense_cottongen_reftransV1_0097852 vs. ExPASy TrEMBL
Match: A0A067GXG5_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0221282mg PE=4 SV=1)

HSP 1 Score: 277.33 bits (708), Expect = 3.682e-81
Identity = 134/163 (82.21%), Postives = 150/163 (92.02%), Query Frame = -1

Query: 1831 NPKVVVTRERGKNTKLIDALAEHGINCLELPLIQHSQGPDSDRLVSVL-SETAFDWIVITSPEAGSVFLEAWKAAGTPNVRIGVVGAGTASIFENLNQSSKQSLHVAFAPSKATGKVLASELPMDGNERCTVLYPASAKASNEIEEGLSHRGFQVLRLNTYTT 2316
            NPKVVVTRERGKN KLI ALA+H I+CLELPLIQH+QGPD+DRL SVL ++T FDWI+ITSPEAGSVFLEAWK AGTPNVRIGVVGAGTASIFE + QSSK SL VAF+PSKATGK+LASELP +G ++CTVLYPASAKASNEIEEGLS+RGF+V+RLNTYTT
Sbjct:   50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTT 212

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BLAST of g.barbadense_cottongen_reftransV1_0097852 vs. ExPASy TrEMBL
Match: M5XY39_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008920mg PE=4 SV=1)

HSP 1 Score: 278.485 bits (711), Expect = 5.849e-81
Identity = 133/161 (82.61%), Postives = 150/161 (93.17%), Query Frame = -1

Query: 1831 PKVVVTRERGKNTKLIDALAEHGINCLELPLIQHSQGPDSDRLVSVLSETAFDWIVITSPEAGSVFLEAWKAAGTPNVRIGVVGAGTASIFENLNQSSKQSLHVAFAPSKATGKVLASELPMDGNERCTVLYPASAKASNEIEEGLSHRGFQVLRLNTYTT 2313
            PKVVVTRERGKN KLI +LA+ GI+CLELPLIQH++GPD D+L +VLS+T FDWIVITSPEAGSVFLEAWKAAGTPNV++GVVGAGTASIFE + QSSKQSL+VAF PSKATGKVLASELP +GN++CTVLYPASAKASNEIEEGLS+RGF+V RLNTYTT
Sbjct:   65 PKVVVTRERGKNGKLISSLAKQGISCLELPLIQHTRGPDLDKLPTVLSDTTFDWIVITSPEAGSVFLEAWKAAGTPNVKVGVVGAGTASIFEEVIQSSKQSLNVAFVPSKATGKVLASELPKNGNKKCTVLYPASAKASNEIEEGLSNRGFEVTRLNTYTT 225

HSP 2 Score: 81.6481 bits (200), Expect = 3.412e-13
Identity = 34/46 (73.91%), Postives = 41/46 (89.13%), Query Frame = -1

Query:  940 RSWVNLISEPDSWSNAVACIGETTASAAKRLGLRNVYFPMQPGLDG 1077
            R+WVNLISE + W+N+VACIGETTA AAK+LGLRNVY+P  PGL+G
Sbjct:  254 RAWVNLISELEQWNNSVACIGETTAKAAKKLGLRNVYYPADPGLEG 299

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097852 vs. ExPASy TrEMBL
Match: V4T983_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10001965mg PE=4 SV=1)

HSP 1 Score: 276.559 bits (706), Expect = 1.365e-80
Identity = 134/163 (82.21%), Postives = 150/163 (92.02%), Query Frame = -1

Query: 1831 NPKVVVTRERGKNTKLIDALAEHGINCLELPLIQHSQGPDSDRLVSVL-SETAFDWIVITSPEAGSVFLEAWKAAGTPNVRIGVVGAGTASIFENLNQSSKQSLHVAFAPSKATGKVLASELPMDGNERCTVLYPASAKASNEIEEGLSHRGFQVLRLNTYTT 2316
            NPKVVVTRERGKN KLI ALA+H I+CLELPLIQH+QGPD+DRL SVL ++T FDWI+ITSPEAGSVFLEAWK AGTPNVRIGVVGAGTASIFE + QSSK SL VAF+PSKATGK+LASELP +G ++CTVLYPASAKASNEIEEGLS+RGF+V+RLNTYTT
Sbjct:   53 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTT 215

HSP 2 Score: 85.1149 bits (209), Expect = 2.167e-14
Identity = 36/46 (78.26%), Postives = 42/46 (91.30%), Query Frame = -1

Query:  940 RSWVNLISEPDSWSNAVACIGETTASAAKRLGLRNVYFPMQPGLDG 1077
            RSWVNLIS+ + WSN+VACIGETTASAAKRLGL+NVY+P  PGL+G
Sbjct:  244 RSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYPTHPGLEG 289

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097852 vs. ExPASy TrEMBL
Match: A0A067H042_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0221282mg PE=4 SV=1)

HSP 1 Score: 276.559 bits (706), Expect = 1.471e-80
Identity = 134/163 (82.21%), Postives = 150/163 (92.02%), Query Frame = -1

Query: 1831 NPKVVVTRERGKNTKLIDALAEHGINCLELPLIQHSQGPDSDRLVSVL-SETAFDWIVITSPEAGSVFLEAWKAAGTPNVRIGVVGAGTASIFENLNQSSKQSLHVAFAPSKATGKVLASELPMDGNERCTVLYPASAKASNEIEEGLSHRGFQVLRLNTYTT 2316
            NPKVVVTRERGKN KLI ALA+H I+CLELPLIQH+QGPD+DRL SVL ++T FDWI+ITSPEAGSVFLEAWK AGTPNVRIGVVGAGTASIFE + QSSK SL VAF+PSKATGK+LASELP +G ++CTVLYPASAKASNEIEEGLS+RGF+V+RLNTYTT
Sbjct:   50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTT 212

HSP 2 Score: 82.8037 bits (203), Expect = 1.318e-13
Identity = 35/45 (77.78%), Postives = 41/45 (91.11%), Query Frame = -1

Query:  940 SWVNLISEPDSWSNAVACIGETTASAAKRLGLRNVYFPMQPGLDG 1074
            SWVNLIS+ + WSN+VACIGETTASAAKRLGL+NVY+P  PGL+G
Sbjct:  243 SWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYPTHPGLEG 287

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097852 vs. ExPASy TrEMBL
Match: A0A067GXG0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g0221282mg PE=4 SV=1)

HSP 1 Score: 276.559 bits (706), Expect = 1.589e-80
Identity = 134/163 (82.21%), Postives = 150/163 (92.02%), Query Frame = -1

Query: 1831 NPKVVVTRERGKNTKLIDALAEHGINCLELPLIQHSQGPDSDRLVSVL-SETAFDWIVITSPEAGSVFLEAWKAAGTPNVRIGVVGAGTASIFENLNQSSKQSLHVAFAPSKATGKVLASELPMDGNERCTVLYPASAKASNEIEEGLSHRGFQVLRLNTYTT 2316
            NPKVVVTRERGKN KLI ALA+H I+CLELPLIQH+QGPD+DRL SVL ++T FDWI+ITSPEAGSVFLEAWK AGTPNVRIGVVGAGTASIFE + QSSK SL VAF+PSKATGK+LASELP +G ++CTVLYPASAKASNEIEEGLS+RGF+V+RLNTYTT
Sbjct:   50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTT 212

HSP 2 Score: 85.1149 bits (209), Expect = 2.413e-14
Identity = 36/46 (78.26%), Postives = 42/46 (91.30%), Query Frame = -1

Query:  940 RSWVNLISEPDSWSNAVACIGETTASAAKRLGLRNVYFPMQPGLDG 1077
            RSWVNLIS+ + WSN+VACIGETTASAAKRLGL+NVY+P  PGL+G
Sbjct:  241 RSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYPTHPGLEG 286

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097852 vs. ExPASy TrEMBL
Match: V4T988_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10001965mg PE=4 SV=1)

HSP 1 Score: 275.789 bits (704), Expect = 4.118e-80
Identity = 134/163 (82.21%), Postives = 150/163 (92.02%), Query Frame = -1

Query: 1831 NPKVVVTRERGKNTKLIDALAEHGINCLELPLIQHSQGPDSDRLVSVL-SETAFDWIVITSPEAGSVFLEAWKAAGTPNVRIGVVGAGTASIFENLNQSSKQSLHVAFAPSKATGKVLASELPMDGNERCTVLYPASAKASNEIEEGLSHRGFQVLRLNTYTT 2316
            NPKVVVTRERGKN KLI ALA+H I+CLELPLIQH+QGPD+DRL SVL ++T FDWI+ITSPEAGSVFLEAWK AGTPNVRIGVVGAGTASIFE + QSSK SL VAF+PSKATGK+LASELP +G ++CTVLYPASAKASNEIEEGLS+RGF+V+RLNTYTT
Sbjct:   53 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTT 215

HSP 2 Score: 85.1149 bits (209), Expect = 2.674e-14
Identity = 36/46 (78.26%), Postives = 42/46 (91.30%), Query Frame = -1

Query:  940 RSWVNLISEPDSWSNAVACIGETTASAAKRLGLRNVYFPMQPGLDG 1077
            RSWVNLIS+ + WSN+VACIGETTASAAKRLGL+NVY+P  PGL+G
Sbjct:  244 RSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYPTHPGLEG 289

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097852 vs. ExPASy TrEMBL
Match: E0CPB0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g11090 PE=4 SV=1)

HSP 1 Score: 272.322 bits (695), Expect = 7.900e-79
Identity = 131/161 (81.37%), Postives = 142/161 (88.20%), Query Frame = -1

Query: 1831 PKVVVTRERGKNTKLIDALAEHGINCLELPLIQHSQGPDSDRLVSVLSETAFDWIVITSPEAGSVFLEAWKAAGTPNVRIGVVGAGTASIFENLNQSSKQSLHVAFAPSKATGKVLASELPMDGNERCTVLYPASAKASNEIEEGLSHRGFQVLRLNTYTT 2313
            PKVVVTRE GKN KLI+ LAEHGINCLE PLIQH++GPD DRL SVLS+TAFDWI+ITSPEAG VFLEAWKAAG P V++GVVG+GT S+FE + QSSKQSL VAFAPSKATGKVLASELP DGN  CTVLYPASAKAS EIEEGLS RGF+V RLNTYTT
Sbjct:   46 PKVVVTREHGKNGKLINVLAEHGINCLEFPLIQHTKGPDLDRLSSVLSDTAFDWIIITSPEAGLVFLEAWKAAGAPCVKVGVVGSGTQSVFEEVMQSSKQSLRVAFAPSKATGKVLASELPKDGNRTCTVLYPASAKASGEIEEGLSSRGFEVTRLNTYTT 206

HSP 2 Score: 79.337 bits (194), Expect = 1.736e-12
Identity = 34/46 (73.91%), Postives = 39/46 (84.78%), Query Frame = -1

Query:  940 RSWVNLISEPDSWSNAVACIGETTASAAKRLGLRNVYFPMQPGLDG 1077
            R+WVNL+SE + W NAVACIGETTA AAKR GLRNVY+P  PGL+G
Sbjct:  235 RAWVNLLSESERWGNAVACIGETTALAAKRSGLRNVYYPTNPGLEG 280

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097852 vs. ExPASy TrEMBL
Match: B9MVK7_POPTR (Uroporphyrinogen-3 synthase family protein OS=Populus trichocarpa GN=POPTR_0014s03400g PE=4 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 4.650e-78
Identity = 129/162 (79.63%), Postives = 150/162 (92.59%), Query Frame = -1

Query: 1831 PKVVVTRERGKNTKLIDALAEHGINCLELPLIQHSQGPDSDRLVSVL-SETAFDWIVITSPEAGSVFLEAWKAAGTPNVRIGVVGAGTASIFENLNQSSKQSLHVAFAPSKATGKVLASELPMDGNERCTVLYPASAKASNEIEEGLSHRGFQVLRLNTYTT 2313
            PKVVVTRERGKN KLI ALA++GI+CLELPLIQH+QGPDSD+L SVL +++AFDWI++TSPEAGSVFLEAWK AGTP V++GVVGAGTASIFE + QSS++SL VAF PSKATGKVLASELP +GN+RCTVLYPASAKASNEIE+GL +RGF+V+RLNTYTT
Sbjct:   46 PKVVVTRERGKNGKLIKALAKYGISCLELPLIQHTQGPDSDKLSSVLCADSAFDWIIVTSPEAGSVFLEAWKVAGTPKVKLGVVGAGTASIFEEVMQSSERSLDVAFTPSKATGKVLASELPRNGNKRCTVLYPASAKASNEIEQGLYNRGFEVVRLNTYTT 207

HSP 2 Score: 77.7962 bits (190), Expect = 5.689e-12
Identity = 32/46 (69.57%), Postives = 38/46 (82.61%), Query Frame = -1

Query:  940 RSWVNLISEPDSWSNAVACIGETTASAAKRLGLRNVYFPMQPGLDG 1077
            R+W NLI E + W+N+VACIGETT SAAKRLG + VYFP QPGL+G
Sbjct:  236 RAWANLIPESEEWNNSVACIGETTGSAAKRLGFKKVYFPRQPGLEG 281

The following BLAST results are available for this feature:

BLAST of g.barbadense_cottongen_reftransV1_0097852 vs. ExPASy Swiss-Prot
BLAST of g.barbadense_cottongen_reftransV1_0097852 vs. ExPASy TrEMBL

BLAST of g.barbadense_cottongen_reftransV1_0097852 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 2


Match Name	E-value	Identity	Description
HEM4_ARATH	2.160e-66	69.57	Uroporphyrinogen-III synthase, chloroplastic OS=Ar...	[more]
HEM4_ORYSJ	7.760e-62	65.84	Uroporphyrinogen-III synthase, chloroplastic OS=Or...	[more]

BLAST of g.barbadense_cottongen_reftransV1_0097852 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
V4V7I8_9ROSI	1.178e-81	82.72	Uncharacterized protein OS=Citrus clementina GN=CI...	[more]
A0A067H9K8_CITSI	3.636e-81	82.21	Uncharacterized protein (Fragment) OS=Citrus sinen...	[more]
A0A067GXG5_CITSI	3.682e-81	82.21	Uncharacterized protein (Fragment) OS=Citrus sinen...	[more]
M5XY39_PRUPE	5.849e-81	82.61	Uncharacterized protein OS=Prunus persica GN=PRUPE...	[more]
V4T983_9ROSI	1.365e-80	82.21	Uncharacterized protein OS=Citrus clementina GN=CI...	[more]
A0A067H042_CITSI	1.471e-80	82.21	Uncharacterized protein (Fragment) OS=Citrus sinen...	[more]
A0A067GXG0_CITSI	1.589e-80	82.21	Uncharacterized protein OS=Citrus sinensis GN=CISI...	[more]
V4T988_9ROSI	4.118e-80	82.21	Uncharacterized protein OS=Citrus clementina GN=CI...	[more]
E0CPB0_VITVI	7.900e-79	81.37	Putative uncharacterized protein OS=Vitis vinifera...	[more]
B9MVK7_POPTR	4.650e-78	79.63	Uroporphyrinogen-3 synthase family protein OS=Popu...	[more]

Pages

InterPro

Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.50.10090		coord: 59..174 e-value: 1.3E-14 score: 53.2
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..18
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 218..245
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 2..13
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 14..18
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..1
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 19..217
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 246..246
None	No IPR available	SIGNALP_GRAM_POSITIVE	SignalP-TM	SignalP-TM	coord: 1..12 score: 0.495
IPR003754	Tetrapyrrole biosynthesis, uroporphyrinogen III synthase	PFAM	PF02602	HEM4	coord: 69..216 e-value: 1.1E-28 score: 100.1
IPR003754	Tetrapyrrole biosynthesis, uroporphyrinogen III synthase	SUPERFAMILY	69618	HemD-like	coord: 56..219

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.barbadense_cottongen_reftransV1_0097852 ID=g.barbadense_cottongen_reftransV1_0097852; Name=g.barbadense_cottongen_reftransV1_0097852; organism=Gossypium barbadense; type=contig; length=3708bp
TTTTTAAGTTGAAGAGATTTTTATTATTATCATAAAAGAATGCACAAAAA
ATGCCATACAACTTAGAAGGCAGAGTAAATATGATTACAATTTCAATTGA
TAAACTCTCCTAACTGCTTATCAGATTTCATGGAGTGGAAATGCTCCCAA
TTCAATTTCAACACAACTGACATTGAGTCAAATGAATGGGCAACAGTGAG
AAAATGCATGTACAAGTTCTGATAACATGAATTGAATAGCCTCTCATCTG
ACCTCAAAATACAGTACTGCAGCCTCCAAATGGATATGTACCTTCAAAAT
GTTAAATTTCTACAAATTCCAACCCTTTAACTTGGAAAAACTTTCTTCAC
TTAATGGCCTGTGGTTCACAAAGAATTAGAAATGCTTGTGGTTCTACTTC
ACTCCGTGCTTAAGTTTCCAGAGGGACCTAATAGAACAACTCATTTATTC
TATTGAGTAAAAATGAGATTACTCCCAGGAATAATTAGAGAAAAGAGGCA
AAAATGGATACCTTGATATCTTTCAATCCTAAAATTTGTCATGAGCCCTT
AAGGCTTCAAGGATGCTAGCAACCCATCTGGAAATTCACATAAAACTGAG
GAGTCAGAATCTTTAATTTAGTCAAAACCCAAAAGAACTTCCACTTTGAT
AAGTACAAAGGTTTGAAGAGACAAAAAGCGAATGTAATTAAAGGAAGAAC
TTTTTTTGCTAAGTCAAGGAAGCTCAGCTCAAATAGAATTTTCCTAAACA
ATCGATAAGTATAGGTTCTCCTAGGAGAGACTTGGCTATTGAAGCAAAAA
CGATTGCAGGAAAAAAGATTGCAGGACCTTGGTCGCGGTGAAACTTTATG
GTTGCTTCAACAGTCGGACTAAATTCAAATGCAACTTACTGCTACCTAAG
GTAGCTCAAGCAGAAAGTTGGATTAAAGAAAGAGGATTACCCATCAAGTC
CAGGCTGCATCGGGAAATACACATTTCTCAATCCTAATCTTTTTGCAGCG
GAGGCAGTTGTCTCTCCAATACAGGCCACTGCATTGCTCCAAGAATCAGG
CTCTGAAATGAGATTGACCCAAGATCTGTAGCAATAGAAGTGGAGAAACT
AAGTTTACCAAAAGAGAAAGAAAAACTGTCCCAACGAAAGACTTGGGAAA
TCAGGCATCCCAAGCAGACCATGTTGAAAGGTGACAATTAAGGTCCAACT
ACCATGATAATTCAAATTACATGCAGCAACAAGTCTACAGGATGGACAAT
GTGCTTGCAGAATCACTAACAGATGGAAAACTTTTAAGACAGCCTACGGG
TGCAAAGAAAAGAATCAACTATATACCGAACCGCAGAAGGTGAAGCAACA
GCAACAACTGGCACAGATTGGGCCTTCTCCAAGACAATATGGTCAACATG
ATCAACAGGTACCTGAAAGGAATGACTAAACATCAAGGACTACTAGAGCA
TGCTGAGTTGGCAGTCATAAACCATCATCGACTACAAGTTACTATCTTGA
ATTAGGAACAAATCTTGCTCCCCAAGAACCAAGAAGGACAACAAACTTTG
CAGCAGACTCAAACAGCATTCTGCAGCAGATGCTTATTCTAAATATCTCA
TACATCTGCCAACTTGCCCAGACTTTACAAAAAGAATTTTTGGATTATGC
TCGTGTTGCTCTCAACAATACAATAGACTGTTCTGCTGGCATTGCTAAAG
TTTCTATTAAGCTAAACAAAAGTGCAATTCAACTTCAGATGAGGTAGATA
AGGTGAAAAAATGTAACCATTAATGGAATGACATCTAAAGAAGAAACTGG
AACTAAAAGTACCAATACAGAGATACTCACAGTTGTGTAAGTATTTAGCC
TCAGAACCTGAAATCCACGATGAGACAAGCCTTCTTCAATCTCATTGCTA
GCCTTCGCTGAAGCTGGATATAAGACAGTGCATCTCTCATTCCCATCCAT
TGGAAGCTCTGAAGCCAAAACTTTTCCTGTTGCTTTTGATGGTGCAAATG
CAACATGAAGTGATTGCTTTGATGATTGATTTAGATTCTCAAATATACTT
GCAGTACCAGCTCCAACAACACCAATCCTAACATTTGGTGTTCCTGCTGC
CTTCCATGCCTCAAGAAAGACTGAACCAGCTTCAGGTGAAGTTATGACAA
TCCAGTCAAACGCCGTTTCACTTAAAACAGAAACAAGCCTATCCGAGTCA
GGCCCTTGTGAATGCTGAATAAGGGGAAGTTCCAAGCAATTGATCCCATG
TTCGGCCAGAGCGTCAATAAGCTTGGTGTTTTTGCCTCGTTCCCTGGTGA
CGACGACTTTCGGATTCGAAGAAGCATGCTGAATCACTTGCGAAGTCGAC
GGAGACGAAGTCGAAGACGCTCCGATTCTGGCACGAGAGAAAGAGATTCG
CGTTTGAAGTTGCAAAGGAAAAGACGGACATGGCGGAGCGAGAGGACTGA
GAGAGGAGAGAGAAAGTAACGCCATTGAAACGTGTTGGGCAGACGATGGA
GGATTGGGCCAAAAGGGGCCAGCTGTTGCCGAATTAACTAACTACTAAAC
CATGATAATTAATTTTTTTTTTTTTCGCAAACCAAAAATATCTAATAGCC
CCTAATTGTTTTCCCGCCTTTAAATAATGCCTACGTTTCCGGTCGGTAAC
CTGTAGAACATACTGGATGACACGTGTAACTTTTTTGTGGCGGGCAAGAG
AGCCTAGTTCTAATTCCCGCCGACACAACAGCATCCCACATTTTTCACTT
TATTCTAAGCCGGGTCCATCATAATCGACTGGGGTTTTAGATAATGAGAC
GGTGCAGACTTCCCTGAGGATCCATCATTCTCCACGGATGATACTGAAAA
GACCGTTGATATTCCTGGCTCTTGTTTCAATCTCCATATCTGCCAGGCTT
CCTTAGGTTCGCCTCTCAACAGAACACAAGCCATCAAAAATGGCACATCG
AAGGAACTTGACTTTGTGCTCGAGCGAAAGACACAATCCTGAAAATAGAC
GAGCGAAGAGTCGGCGTCAAAAACAACAGCCTTTACAGAGGAAGGTAGAG
GATTATTTTGAGCCCAAAACTTATTATTCCACAAGCAATTCTCATCACGT
CGGAAAAACTGGTCAGTGACTGACTGATGCTATGACAAAATTGATTGCTT
AGCAGCCAATGGTCGACCGCCACAATAGCCGTGGAGAACTCCAAACCTCC
TTTTCAGAATCTATTGTTCGACATCTTTGATCGAAGAATTTGAACAGTCA
GTGCTCTTTGGCTGAATAAGAGGAACAAGTGGCTCAATTCTCGAGGTAAA
TAGCGATCGACATTGGGTCTACTTAGACACCTCCAAAACTTGAAACACAG
AACAGGGAGAATGGTGATATTTTAAAAGGAAGGGATTTGAACCATAGGAG
ATGACATAAGGAAAGGAGCACTAGCAGTGCCCTTCAAGCGATGCCGGTGG
TGGACGGCAACAATGGAATAAGATAACAGACGACGAATAGGGTTGTTTCA
GGGATAAGGCACAACGCCCAATGTTTGGCGAATGAGGCTCGACTGCAGGG
CCACTGGGCAGGGAAGCAATGTTGGAGAAAAGCAAATTAAATACTTCAAA
ACCGGCAAAGAAGGTTTTTTATTTACACTAATTATGTTATTTGATGGTTG
GGTTTTGACCAAAATAATTTATTTTTAAATTTTATCTTTATAATTAGTTA
ATTCTTGC

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR003754	4pyrrol_synth_uPrphyn_synth

Vocabulary: **Molecular Function**
Term	Definition
GO:0004852	uroporphyrinogen-III synthase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0033014	tetrapyrrole biosynthetic process

Search form

g.barbadense_cottongen_reftransV1_0097852, g.barbadense_cottongen_reftransV1_0097852 (contig) Gossypium barbadense

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