g.barbadense_cottongen_reftransV1_0097850, g.barbadense_cottongen_reftransV1_0097850 (contig) Gossypium barbadense
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0097850 vs. ExPASy Swiss-Prot
Match: NET2A_ARATH (Protein NETWORKED 2A OS=Arabidopsis thaliana GN=NET2A PE=2 SV=1) HSP 1 Score: 200.675 bits (509), Expect = 1.765e-51 Identity = 118/229 (51.53%), Postives = 150/229 (65.50%), Query Frame = -2 Query: 2638 FWLRFSTSIHQIQKYQTSVKDLKAELSKLR--EKIHQEG----SGGKMKSEVCPIFSHLREIKTELTLWLENNEVLKDEVQDRHFSLCNFQDEIARVT--NATNRGRETGISEYQAAKFQGEVLNMKQEIKKVGDELNAGFTRAGQLKQEVEKITADLEKEL------XXXXXXXXXXXXXQPRVPMQSFLFGIKFKNRRKTKKS-------------LQKQLSYIIEP 3243 FWLRFSTS+HQIQKYQT+V+DLK+ELSKLR K QE S + SE PI+ HLREI+TEL LWLEN+ VLKDE+Q R+ SL N Q+EIARVT + N+ ++ IS YQAAKF GE+LNMKQE K+V EL++G R LK EVE+I + LE++L + T+ S S +PR+P++SFLFG+K K R+ K+S L KQ SY P Sbjct: 714 FWLRFSTSVHQIQKYQTTVQDLKSELSKLRIESKQQQESPRSSSNTAVASEAKPIYRHLREIRTELQLWLENSAVLKDELQGRYASLANIQEEIARVTAQSGGNKVSDSEISGYQAAKFHGEILNMKQENKRVSTELHSGLDRVRALKTEVERILSKLEEDLGISSATEARTTPSKSSSSGRPRIPLRSFLFGVKLKKNRQQKQSASSLFSCVSPSPGLHKQSSYSRPP 942
BLAST of g.barbadense_cottongen_reftransV1_0097850 vs. ExPASy Swiss-Prot
Match: NET2B_ARATH (Protein NETWORKED 2B OS=Arabidopsis thaliana GN=NET2B PE=3 SV=1) HSP 1 Score: 196.823 bits (499), Expect = 2.607e-50 Identity = 111/229 (48.47%), Postives = 149/229 (65.07%), Query Frame = -2 Query: 2638 FWLRFSTSIHQIQKYQTSVKDLKAELSKLREKIHQEGSGGK-----MKSEVCPIFSHLREIKTELTLWLENNEVLKDEVQDRHFSLCNFQDEIARVTNATNRGR--ETGISEYQAAKFQGEVLNMKQEIKKVGDELNAGFTRAGQLKQEVEKITADLEKEL-------XXXXXXXXXXXXXQPRVPMQSFLFGIKFKNRRKTKK-------------SLQKQLSYIIEP 3243 FWLRFSTS+HQIQKY TSV+DLKAELSK+ K Q+G+ G + SE PI+ HLREI+TEL LWLEN+ +L+DE++ R+ +LCN +DE++RVT+ + T I YQAAKF GE+LNMKQE K+V +EL AG RA L+ EVE++ LE+ L + S S + S + +PR+P++SFLFG+K K ++ K +L KQ SYII P Sbjct: 692 FWLRFSTSVHQIQKYHTSVQDLKAELSKIESK--QQGNAGSSSNTALASEAKPIYRHLREIRTELQLWLENSAILRDELEGRYATLCNIKDEVSRVTSQSGATEVSNTEIRGYQAAKFHGEILNMKQENKRVFNELQAGLDRARALRAEVERVVCKLEENLGILDGTATRSLSKRMPSSAGKPRIPLRSFLFGVKLKKYKQQPKQTSTIFSCVSPSPALNKQCSYIIPP 918
BLAST of g.barbadense_cottongen_reftransV1_0097850 vs. ExPASy Swiss-Prot
Match: NET2D_ARATH (Protein NETWORKED 2D OS=Arabidopsis thaliana GN=NET2D PE=3 SV=1) HSP 1 Score: 159.844 bits (403), Expect = 1.578e-38 Identity = 89/191 (46.60%), Postives = 118/191 (61.78%), Query Frame = -2 Query: 2695 FWLRFSTSIHQIQKYQTSVKDLKAELSKLREKIHQEGSGGK---MKSEVCPIFSHLREIKTELTLWLENNEVLKDEVQDRHFSLCNFQDEIARVTNATNRGRETGISEYQAAKFQGEVLNMKQEIKKVGDELNAGFTRAGQLKQEVEKITADLEKELXXXXXXXXXX-----XXXQPRVPMQSFLFGIKFK 3243 FWLRFST+ QIQ Y TS++DL+AE+SKL ++ Q+GS ++S+V P++ HLREI T+L LWLE LK+E++ R SLCN QDEI + ++ + + YQAAKFQGEVLNMKQE KV DEL AG L+ EV+K L E + S S + RVP++SF+FG K K Sbjct: 735 FWLRFSTAFGQIQSYDTSIEDLQAEISKLEQRRKQDGSSTAKYALRSDVRPLYVHLREINTDLGLWLEKGAALKEELKSRFESLCNIQDEITKALKSSAEDDDFRFTSYQAAKFQGEVLNMKQENNKVADELQAGLDHITTLQLEVDKTLGKLIDEFALSGSKNKSDLDLQHSDSRSRVPLRSFIFGSKQK 925
BLAST of g.barbadense_cottongen_reftransV1_0097850 vs. ExPASy Swiss-Prot
Match: KIP1_PETIN (Kinase-interacting protein 1 OS=Petunia integrifolia GN=KIP1 PE=1 SV=1) HSP 1 Score: 155.606 bits (392), Expect = 3.362e-37 Identity = 87/190 (45.79%), Postives = 126/190 (66.32%), Query Frame = -2 Query: 2680 FWLRFSTSIHQIQKYQTSVKDLKAELSKLREKIHQEGSGG-KMKSEVCPIFSHLREIKTELTLWLENNEVLKDEVQDRHFSLCNFQDEIARVTNATNRGRETGISEYQAAKFQGEVLNMKQEIKKVGDELNAGFTRAGQLKQEVEKITADLEKEL-XXXXXXXXXXXXXQPRVPMQSFLFGIKFKNRRKT 3243 FWLRFS++ HQIQK++T+V DL+ E+SK R+K Q S +KSE+ P++ H++EI+ ELT+WLE LKDE++ R +LC+ Q+EI++ ET S +QAAKFQGEVLNMK E KKV +EL AG +R L+++VEK L++E + SQ + R+P+QSF+FG K K +++ Sbjct: 775 FWLRFSSAFHQIQKFKTTVHDLQNEISKARDKEMQGNSPRVDVKSEIRPLYKHMKEIQNELTVWLEQTLSLKDELERRFSALCSIQEEISKGLKEEVED-ETTFSSHQAAKFQGEVLNMKHENKKVREELEAGISRVTILQEDVEKTVTQLDQEFGLTGNQSQLMQSVSKSRIPLQSFIFGTKPKKEKRS 963
BLAST of g.barbadense_cottongen_reftransV1_0097850 vs. ExPASy Swiss-Prot
Match: NET2C_ARATH (Protein NETWORKED 2C OS=Arabidopsis thaliana GN=NET2C PE=2 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 1.332e-25 Identity = 73/208 (35.10%), Postives = 122/208 (58.65%), Query Frame = -2 Query: 2623 FWLRFSTSIHQIQKYQTSVKDLKAELSKLREKIHQEGSGGKMKSEVCPIFSHLREIKTELTLWLENNEVLKDEVQDRHFSLCNFQDEIARVTNATNRGRETGISEYQAAKFQGEVLNMKQEIKKVGDELNAGFTRAGQLKQEVEKITADLEKELXXXXXXXXXXXXXQPRVPMQSFLFGIKFKNRRKTKKS-LQKQLSYIIEPKEPSG 3243 +RFS S +IQ++ T +KDL E+ K+ ++ +Q+G ++S V PI+ HL EI+TE+T+WLE + +LK+E+ R +L + +EI + E + YQ AKF+GEV NMK+E ++ +EL G + +L ++ + L +E S + S QS + R+P++SF+F K K +R + S +Q LS + K+P+G Sbjct: 644 LLVRFSNSFGKIQQFDTGIKDLHGEMLKIIKQKNQDGGKNTLRSNVRPIYKHLSEIRTEMTVWLEKSLLLKEEINIRASTLSDIHNEITEALKTDSEDSEIKFTIYQGAKFEGEVSNMKKENNRIAEELQTGLDQVTKLMKDADTTLEKLSEEF-SLSESNTQSSQDRSRIPLRSFIFDRKPKKQRLSLFSCIQPSLSKM---KKPAG 847
BLAST of g.barbadense_cottongen_reftransV1_0097850 vs. ExPASy TrEMBL
Match: A5AHT3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_010188 PE=4 SV=1) HSP 1 Score: 293.508 bits (750), Expect = 3.481e-83 Identity = 297/703 (42.25%), Postives = 374/703 (53.20%), Query Frame = 1 Query: 196 MIQNTKKQKKGSISEEDISTLLQRYTATTVLALLQEVAQFPGVKLDWNALVKKTSTGISNAREYQMLWRHLAYRDVLLEKXXXXXXXXXXXXXXXXXXXPCPXXXXXXXXXXXXCVKVLIASGLPNDSSLANSSMVDAPLTINIPNARSFRVSSENLQPSCSMPGTNITVPVSVQKKILPSVTSAETMEGNGPAGANLPARRKRKPWSEAEDLELIAAVQKCGVGNWANILRGDFKGDRTASQLAQRWTVIKKRCGNLNVEG-NSAIPQLSEAQLATRSALSLALDMPDKNLTAACT---NNPGLKIMSSSAPPTAGGEASARAQSQVQQGPLASVEAPIQSQQGPIASVSSRNRSQEGPITSASPQNPSQQGPVASVQVPNQSQQGSMPTKTSPRGSSGSTLKSRVTLKKAPAKPFSTTGSILDATAVAAGARIGSPEXXXXXXXXXXXXXXIHIMTTAGSSVKPVIPSGT------------SSQYVCTG--LTAEAHSSPVTSSTLHPGSVKTATQRVEHTSSVS-LSINAPMQQCNAVTSGTAVEVSPKEDL----EIKGSVSDSLPKEQVRENRAYVSKNERGEEVKEHKEALTNPGSELRNIVAEAEHPNEKLMVDGDQVGVKANPVE------ESVNASDSK--DCLLVKKSTTQPTAEESCRNHSMTEMPAKASSLSDGCA-KNLEVLSTAETGR 2208 M++ K +KKG+ISEED+S LLQR E + G +W LLEKLEDGA PLDDDSDLEY+LE PS+S+E SAEA ACVKVLIAS LP+DSSL NSSMV+APLTINIP +S R SE + S SM GTNIT+PVSVQK +E + NG +LPAR+KRKPWS ED ELIAAVQKCG GNWANIL+GDFKGDR+ASQL+QRWT+I+K+ NLNV G NS QLSEAQLA R A+SLALDMP KNLT + + NP +S+ P T P ++ A S N SQ Q SQQGPV+++ SQ GS+ GS KSR T KK AK ++ S+L ATAVAAGARI +P AAASLLK AQS+NA+HIM + +K + G + Y C G T+ + S V S GS K A + S S S+N +Q NA T+ AVE K++ E K +S ++PK +V E++A VS N E+V+E + L+N +V E N+K MV + +K E ES N +D+K D + + Q A E+ N + E + + C K+ EVL A G Sbjct: 1 MVEMPKMRKKGTISEEDVSALLQR-----------EYSDASGA-----------------------IW---PMAXALLEKLEDGAQPLDDDSDLEYDLEAFPSISTEASAEATACVKVLIASSLPSDSSLPNSSMVEAPLTINIPCGQSSRAPSEYSRLSGSMQGTNITIPVSVQK--------SEGFDANGSTSGSLPARKKRKPWSSDEDKELIAAVQKCGEGNWANILKGDFKGDRSASQLSQRWTIIRKKHKNLNVGGANSNGSQLSEAQLAARHAMSLALDMPVKNLTTSSSIAGTNPNATSSNSAFPAT----------------PAEALPA-------------STNISQ--------AQQLSQQGPVSTL-----SQMGSL----------GSAPKSRATSKKTSAKSTFSSQSMLKATAVAAGARIATPSAAASLLKDAQSRNAVHIMPGGSTLIKSSVAGGANPLPANHLGAHPNVHYKCAGPPTTSLSTYSAVAPSVSRTGSAKPAAPGGQLAPSPSATSVNISSEQTNAATTSLAVEYPAKQETKTSEETKVPISGNVPKAKVLEDQACVSSNTASEQVQEDQATLSN-----TEVVLE----NKKAMVSDTKCLLKTETAENDGEVAESQNVNDNKIMDFRVAGECENQSVANENSGNQNANEKQTDLPNTATDCGEKSDEVLYKATAGE 597
BLAST of g.barbadense_cottongen_reftransV1_0097850 vs. ExPASy TrEMBL
Match: K4BU74_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc04g076360.2 PE=4 SV=1) HSP 1 Score: 280.411 bits (716), Expect = 7.993e-79 Identity = 172/299 (57.53%), Postives = 220/299 (73.58%), Query Frame = 1 Query: 196 MIQNTKKQKKGSISEEDISTLLQRYTATTVLALLQEVAQFPGVKLDWNALVKKTSTGISNAREYQMLWRHLAYRDVLLEKXXXXXXXXXXXXXXXXXXXPCPXXXXXXXXXXXXCVKVLIASGLPNDSSLANSSMVDAPLTINIPNARSFRVSSENLQPSCSMPGTNITVPVSVQKKILPSVTSAETMEGNGPAGANLPARRKRKPWSEAEDLELIAAVQKCGVGNWANILRGDFKGDRTASQLAQRWTVIKKRCGNLNVEGNSAIPQLSEAQLATRSALSLALDMPDKNLTAACTNNP 1092 M++ K K+G ++E+D+STLLQRYTA T+L LLQEV Q G K+DWN LVKKT+TGI++AREYQM+WRHLAYR VLL+K +D A P+DDDSDLEYELE P VSSE S EAAA KV IASG DS+++N + V+A LTI IPN ++ + N S G +TVPV+VQ + +PSV++AE ++ +GPA ANLP RR+RK W+ AED+ELI AVQK G GNWANIL+ DFKGDRTASQL+QRW I+K+ ++ + GN + LSEAQLA R A+S+A N+ AAC +P Sbjct: 1 MVEKRKVNKRGFVTEDDMSTLLQRYTAFTMLTLLQEVGQVNGSKIDWNDLVKKTATGITSAREYQMVWRHLAYRKVLLDKFDDNAQPMDDDSDLEYELESFPPVSSEASTEAAAWGKVFIASGALRDSNMSNGNTVEASLTIQIPNGQTSGTVAANSLQGISAFGKKLTVPVTVQTQPMPSVSAAEGLDTSGPATANLP-RRRRKAWTGAEDMELITAVQKYGEGNWANILKTDFKGDRTASQLSQRWATIRKQ--HVMMVGNGS--HLSEAQLAARHAVSMAF---RDNVRAACPISP 291
BLAST of g.barbadense_cottongen_reftransV1_0097850 vs. ExPASy TrEMBL
Match: M0T6J5_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1) HSP 1 Score: 283.493 bits (724), Expect = 1.030e-78 Identity = 211/457 (46.17%), Postives = 281/457 (61.49%), Query Frame = 1 Query: 220 KKGSISEEDISTLLQRYTATTVLALLQEVAQFPGVKLDWNALVKKTSTGISNAREYQMLWRHLAYRDVLLEKXXXXXXXXXXXXXXXXXXXPCPXXXXXXXXXXXXCVKVLIASGLPNDSSLANSSMVDAPLTINIPNARSFRVSSENLQPSCSMPGTNITVPVSVQKKILPSVTSAETMEGNGPAGANLPARRKRKPWSEAEDLELIAAVQKCGVGNWANILRGDFKGDRTASQLAQRWTVIKKRCGNLNV-EGNSAIPQL-SEAQLATRSALSLALDMPDKNLTAACTNNPGLKIMSSSAPPTAGGEASARAQSQVQQGPLASVEAPIQSQQGPIASVSSRNRSQEGPITSASPQNPSQQGPVASVQVPNQSQQGSMPTKTSPRGSSGSTLKSRVTLKKAPAKPFSTTGSILDATAVAAGARIGSPEXXXXXXXXXXXXXXIHIMTTAGSSVKPV 1584 +K ISEED+S LLQRY TT+L LLQEV++ GV++DWNALVK+T+TGI++AREYQMLWRHLAY LLE +EDGA+PLDD+SDLE E+E P+VS E +EAAACVKVLI+ G+P + L + + ++ PL +N N ++ RVSS+ Q S S GT+ITVP ++QK+ + TSAE ++GNG AG ++ +++RKPW++ ED+ELIA VQK G GNWANIL+GDFK +RTASQL+QRW +I+KR NL GN ++ SE +LAT+ A+SLALDMP+ +A I+S GG S S S P+ SQ P N QQ + SQ+ ++ T PR + ++ P KP S S++ A A AAG RI +P AASL KAAQSKNA+HI G+ P+ Sbjct: 7 RKVGISEEDVSLLLQRYNPTTILTLLQEVSEAAGVRIDWNALVKRTATGITSAREYQMLWRHLAYHHTLLETIEDGAEPLDDESDLELEIEAVPAVSGEALSEAAACVKVLISCGVPREQGLTSRTAIETPLAVNGFNNQALRVSSDKQQLSQSNYGTDITVP-TLQKQPQSTGTSAEGLDGNGMAGPSIAPKKRRKPWTKEEDMELIAGVQKFGEGNWANILKGDFKHNRTASQLSQRWAIIRKRDTNLLASSGNKSMSSTRSEERLATQKAISLALDMPNSGRLSA--------ILS-------GGTQSITPASSSALSAALSEALPVSSQ----------------------PLNQLQQASTLAT-----SQKITLNTSNKPRTTPKKSM--------VPVKPSSGPNSLIQAAAFAAGGRIATPSTAASLFKAAQSKNAVHIRPGGGARPSPI 412
BLAST of g.barbadense_cottongen_reftransV1_0097850 vs. ExPASy TrEMBL
Match: A0A0A0LHM8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G891670 PE=4 SV=1) HSP 1 Score: 272.707 bits (696), Expect = 3.434e-78 Identity = 161/293 (54.95%), Postives = 216/293 (73.72%), Query Frame = 1 Query: 196 MIQNTKKQKKGSISEEDISTLLQRYTATTVLALLQEVAQFPGVKLDWNALVKKTSTGISNAREYQMLWRHLAYRDVLLEKXXXXXXXXXXXXXXXXXXXPCPXXXXXXXXXXXXCVKVLIASGLPNDSSLANSSMVDAPLTINIPNARSFRVSSENL--QPSCSMPGTNITVPVSVQKKILPSVTSAETMEGNGPAGANLPARRKRKPWSEAEDLELIAAVQKCGVGNWANILRGDFKGDRTASQLAQRWTVIKKRCGNLNVEGNSAIPQLSEAQL-ATRSALSLALDMPDKN 1065 M+ + ++ G+IS ED S LL+RY+ T+L LL+EVAQ GV++DW+ LV+ TSTGIS+AREYQ+LWRHLAYR LLE + D LD DSDL++E+EP PSVSSE+S EA+ACVKVLIA+ +PN+S + NSS V+APLTI I N + S++NL S + ++T+P+S+Q++ +P ++ E ++ NG +R++RKPWS+AEDLELIAAV+KCG GNWANIL+GDFKGDRTASQL+QRW+VI+KR NLN+ G S +AQ+ A ALS ALD+P N Sbjct: 1 MMGKKENRRTGTISMEDCSPLLERYSVRTILTLLREVAQVSGVRIDWDKLVENTSTGISDAREYQLLWRHLAYRQTLLEDMHSVTDSLDYDSDLDFEVEPFPSVSSESSNEASACVKVLIANSIPNESDVPNSSAVEAPLTIGISNCQP---STDNLDHHQSTYLQRMSVTIPLSIQRQPIPMPSATEVIDVNGAT-----SRKRRKPWSKAEDLELIAAVEKCGEGNWANILKGDFKGDRTASQLSQRWSVIRKRRCNLNI-GASTSSTAHKAQIDAAHRALSFALDLPVNN 284
BLAST of g.barbadense_cottongen_reftransV1_0097850 vs. ExPASy TrEMBL
Match: K7KJ58_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 263.848 bits (673), Expect = 5.611e-73 Identity = 165/297 (55.56%), Postives = 211/297 (71.04%), Query Frame = 1 Query: 211 KKQKKGSISEEDISTLLQRYTATTVLALLQEVAQFPGVKLDWNALVKKTSTGISNAREYQMLWRHLAYRDVLLEKXXXXXXXXXXXXXXXXXXXPCPXXXXXXXXXXXXCVKVLIASGLPNDSSLANSSMVDAPLTINIPNARSFRVSSENLQPSCSMPGTNITVPVSVQKKILPSVTSAETMEGNGPAGANLPARRKRKPWSEAEDLELIAAVQKCGVGNWANILRG-DFKGDRTASQLAQRWTVIKKRCGNLNVEGNSAIPQLSEAQLATRSALSLALDMPDKNLTAACTNNPGL 1098 KK KK S +EED TL+QRY ATTV LLQEVA +P K+DW LVKK++T ISNAREYQMLWRHLAYR L E EDG +PLDDDSDLE ELE P VS E ++EAAACVKV+IAS ++S+ +SS ++APLTIN+P S R EN QPS M GT+I PV+VQ++ LP+++S + +E G G N+ ++RKRK WSE ED++L AAVQ+ G GNWA + +G DF R+A+QLAQRW++++K+ G N ++ + QLATR +LSLALDMP K LTA PG+ Sbjct: 4 KKNKKVSFTEEDAVTLMQRYDATTVFTLLQEVAHYPHPKIDWCELVKKSATEISNAREYQMLWRHLAYRHSLPEIFEDGDEPLDDDSDLECELEAFPPVSVECASEAAACVKVMIASRTLSESA-PSSSTIEAPLTINVPVCHSSRTPIENSQPSNLMQGTSIIFPVTVQRQTLPTISSTDGIETKGIVGGNMASKRKRKAWSEEEDMQLRAAVQRWGEGNWATMAKGDDFPIKRSATQLAQRWSILRKKDGCTNTGTITSTQYTTAEQLATRHSLSLALDMPFKKLTA-----PGM 294 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0097850 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 5
BLAST of g.barbadense_cottongen_reftransV1_0097850 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0097850 ID=g.barbadense_cottongen_reftransV1_0097850; Name=g.barbadense_cottongen_reftransV1_0097850; organism=Gossypium barbadense; type=contig; length=3244bpback to top |