g.barbadense_cottongen_reftransV1_0097845, g.barbadense_cottongen_reftransV1_0097845 (contig) Gossypium barbadense

Overview


Name	g.barbadense_cottongen_reftransV1_0097845
Unique Name	g.barbadense_cottongen_reftransV1_0097845
Type	contig
Organism	Gossypium barbadense (Sea Island cotton)
Sequence length	2870

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Dt05	chromosome	g.barbadense_cottongen_reftransV1_0097845:1..2870 . Dt05:17483925..17486982 +		n/a

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium barbadense CottonGen RefTrans V1	2016-11-01
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot	2016-11-01
InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1	2016-11-02
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL	2016-11-02

Homology

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097845 vs. ExPASy Swiss-Prot
Match: PKNX1_BOVIN (Homeobox protein PKNOX1 OS=Bos taurus GN=PKNOX1 PE=2 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 1.615e-9
Identity = 33/98 (33.67%), Postives = 49/98 (50.00%), Query Frame = -1

Query:  372 RG-LPETSVAILRTWLFEHFLHPYPTDSEKLMLASQTGLTKNQV*SLLSICICSIDDLFLFNPNXXXXXXXVKIQISNWFINARVRLWKPMIEEMYKE 662
            RG LP+ +  ++R+WLF+H  HPYPT+ EK  +A+QT LT                                 +Q++NWFINAR R+ +PM++    E
Sbjct:  263 RGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLT--------------------------------LLQVNNWFINARRRILQPMLDSSCSE 328

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097845 vs. ExPASy Swiss-Prot
Match: MEIS2_MOUSE (Homeobox protein Meis2 OS=Mus musculus GN=Meis2 PE=1 SV=2)

HSP 1 Score: 65.0846 bits (157), Expect = 1.773e-9
Identity = 33/100 (33.00%), Postives = 49/100 (49.00%), Query Frame = -1

Query:  366 RGL-PETSVAILRTWLFEHFLHPYPTDSEKLMLASQTGLTKNQV*SLLSICICSIDDLFLFNPNXXXXXXXVKIQISNWFINARVRLWKPMIEEMYKEEF 662
            RG+ P+ +  I+R WLF+H  HPYP++ +K  LA  TGLT                                 +Q++NWFINAR R+ +PMI++  +  F
Sbjct:  280 RGIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLT--------------------------------ILQVNNWFINARRRIVQPMIDQSNRAGF 347

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097845 vs. ExPASy Swiss-Prot
Match: PKNX1_MOUSE (Homeobox protein PKNOX1 OS=Mus musculus GN=Pknox1 PE=2 SV=3)

HSP 1 Score: 64.6994 bits (156), Expect = 1.793e-9
Identity = 33/98 (33.67%), Postives = 49/98 (50.00%), Query Frame = -1

Query:  372 RG-LPETSVAILRTWLFEHFLHPYPTDSEKLMLASQTGLTKNQV*SLLSICICSIDDLFLFNPNXXXXXXXVKIQISNWFINARVRLWKPMIEEMYKE 662
            RG LP+ +  ++R+WLF+H  HPYPT+ EK  +A+QT LT                                 +Q++NWFINAR R+ +PM++    E
Sbjct:  263 RGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLT--------------------------------LLQVNNWFINARRRILQPMLDSSCSE 328

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097845 vs. ExPASy Swiss-Prot
Match: MEIS2_HUMAN (Homeobox protein Meis2 OS=Homo sapiens GN=MEIS2 PE=1 SV=2)

HSP 1 Score: 65.0846 bits (157), Expect = 1.804e-9
Identity = 33/100 (33.00%), Postives = 49/100 (49.00%), Query Frame = -1

Query:  366 RGL-PETSVAILRTWLFEHFLHPYPTDSEKLMLASQTGLTKNQV*SLLSICICSIDDLFLFNPNXXXXXXXVKIQISNWFINARVRLWKPMIEEMYKEEF 662
            RG+ P+ +  I+R WLF+H  HPYP++ +K  LA  TGLT                                 +Q++NWFINAR R+ +PMI++  +  F
Sbjct:  280 RGIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLT--------------------------------ILQVNNWFINARRRIVQPMIDQSNRAGF 347

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097845 vs. ExPASy Swiss-Prot
Match: PKNX1_HUMAN (Homeobox protein PKNOX1 OS=Homo sapiens GN=PKNOX1 PE=1 SV=3)

HSP 1 Score: 64.6994 bits (156), Expect = 1.889e-9
Identity = 33/98 (33.67%), Postives = 49/98 (50.00%), Query Frame = -1

Query:  372 RG-LPETSVAILRTWLFEHFLHPYPTDSEKLMLASQTGLTKNQV*SLLSICICSIDDLFLFNPNXXXXXXXVKIQISNWFINARVRLWKPMIEEMYKE 662
            RG LP+ +  ++R+WLF+H  HPYPT+ EK  +A+QT LT                                 +Q++NWFINAR R+ +PM++    E
Sbjct:  263 RGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLT--------------------------------LLQVNNWFINARRRILQPMLDSSCSE 328

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097845 vs. ExPASy TrEMBL
Match: A0A059BQ86_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F01858 PE=4 SV=1)

HSP 1 Score: 392.119 bits (1006), Expect = 1.869e-122
Identity = 248/502 (49.40%), Postives = 307/502 (61.16%), Query Frame = -1

Query:  294 MVSRDSPPNPTSSMLHHFIVSDPINSRNQFGGQPFDAYGSTLRGNHNTFPQSLGLLPTIHSLGERMSRSMDLLPSPIVTDESDISQTRHLMDLLGAANETNHQTQRLSLSLGSHMLDPSL---------NSGITSPSYLLSRAEDREACNPGVGNLRDDYNFTVNTFASPSTSLHRSLLTTYGAAESFATAIVNSRYLKPTESLLHELVNIGGKNVD---ENFFGKLYLG-DRGGNARLSSELKAEFCSNEMLLPE-NELRIRLAKLIGLLEEVELRYEKYYQQMEEVVSSFESLAGLGAAKSYTALALQAMSRHFGKLRDAIISHINVIRRKFSHDLPRINRGLSQLSLFXXXXXXXXXXXXXXLGMIPRQRQAWRPIRGLPETSVAILRTWLFEHFLHPYPTDSEKLMLASQTGLTKNQV*SLLSICICSIDDLFLFNPNXXXXXXXVKIQISNWFINARVRLWKPMIEEMYKEEFEDSPQDSDPSFASSSMGREGITDQ 1757
            MV+ +SPP+P  +  H FI  +     +QF G    +YGS LR N+  F + +G +P+I    ERM RS++L+ SP+   ES I+ TRHLMDLL  AN  N Q   L+LSL S + +P+           +   SPSY++   E REAC+              + FAS S   +R   T+Y   +   + I NS YLKP +SLL E+V+I G   +   E +  KLY G +R     L SELK EF  N  L PE +EL+ +LAKL+ LLEEVE R+ KYY  MEEV  SFES+AGLGAAKSYTALALQAM+RHF  LRDAI+S I + R K   D  RI+ GLS+LSLF+R+ RQ +++  QQLG++  QRQAWRPIRGLPETS+AILR+WLFEHFLHPYP DSEKLMLASQTGLTKN                                QISNWFINARVRLWKPMIEEMYKEE  DS +DS+P    S      ITD+
Sbjct:    1 MVTHESPPDPMPTAWHRFIPCE-----SQFEGPDLSSYGSALR-NNTAFFEPIGAVPSIQYHRERMPRSINLVHSPVTVAESHITHTRHLMDLLEVANVPN-QAHSLTLSLNSPLPEPNTVQFGHRPLGGTDFNSPSYVVP-GESREACDAS----------NDSEFASSSAPRNRQCFTSY-RPDLVPSIIGNSTYLKPAQSLLEEIVSICGNGAEIANEKYLRKLYGGAERKATLGLVSELKEEF-GNIGLPPEKHELQAKLAKLVSLLEEVEARFMKYYFHMEEVALSFESVAGLGAAKSYTALALQAMTRHFCNLRDAIVSQIKITRIKLFDDSSRISCGLSRLSLFNRECRQKQRNSLQQLGLMHGQRQAWRPIRGLPETSLAILRSWLFEHFLHPYPNDSEKLMLASQTGLTKN--------------------------------QISNWFINARVRLWKPMIEEMYKEEIADSSEDSNPLIKGS------ITDE 444

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097845 vs. ExPASy TrEMBL
Match: M0ZWL8_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400003750 PE=4 SV=1)

HSP 1 Score: 386.726 bits (992), Expect = 7.799e-121
Identity = 249/498 (50.00%), Postives = 307/498 (61.65%), Query Frame = -1

Query:  285 MVSRDSPPNPTSSMLHHFIVSDPINSRNQFGGQPFDAYGSTLRGNHNTFPQSLGLLPTIHSLGERMSRSMDLLPSP-IVTDESDISQTRHLMDLLGAANE--TNHQTQRLSLSLGSHMLDPSLNSGITSPSYLLSRAEDREACNPGVGNLRDDYNFTVNTFASPSTSLHRSLLTTYGAAESFATAIVNSRYLKPTESLLHELVNIGGKNVD---ENFFGKLYLGDRGGNARLSSELKAEFC-SNEMLLPENELRIRLAKLIGLLEEVELRYEKYYQQMEEVVSSFESLAGLGAAKSYTALALQAMSRHFGKLRDAIISHINVIRRKFSHDLPRINRGLSQLSLFXXXXXXXXXXXXXXLGMIPRQRQAWRPIRGLPETSVAILRTWLFEHFLHPYPTDSEKLMLASQTGLTKNQV*SLLSICICSIDDLFLFNPNXXXXXXXVKIQISNWFINARVRLWKPMIEEMYKEEFEDSPQDSDPSFASSSMGREGITDQAED 1757
            MVS+DSPP   SS+LH FI SD I + +Q G Q FD Y S    +  T  Q  G L          SRS++ +  P   TD  D++ +RHLMDLLGA+++  TN Q QRLSLSLGSH L  S     T+PSY+          N  +    ++Y+F+       + ++++S     G  ESF +AI NS+YLKPT+SLL ELV IGGK +D   E F  +L    + G+  L + LK E   SNE+    +EL +++ KLI LLEEVE RYE+YYQ MEEV S+FE +A  GA K+YT LALQAMSRHF  LRDAIIS INVIR+K   D+P+I+ GLS LSLF        +   QQLG+I   RQAWRPIRGLPETSVAILR+WLFEHFLHPYP DSEKLML+SQTGL+KNQV                                SNWFINARVRLWKPMIEEMYKEEF +S  +SD     + + REG+TD AE+
Sbjct:    1 MVSKDSPPPSHSSILHQFINSDSIMT-SQIGSQHFDMYQS----DTTTAYQPHGGL----------SRSIEFVNHPDFTTDSHDVNHSRHLMDLLGASHDANTNQQAQRLSLSLGSHSLVSSF----TNPSYM----------NQEIDQRNNEYSFS-------AAAMNQSFSNVCGT-ESFVSAIGNSKYLKPTQSLLEELVCIGGKTIDSSNEKFIRRLSRNSKKGSLSLRAMLKGEIPPSNELFNERHELYVKIMKLIVLLEEVERRYEQYYQHMEEVTSTFEVIAAFGAGKAYTVLALQAMSRHFCCLRDAIISQINVIRQKMLRDVPKISSGLSHLSLF-EKETLQNRISLQQLGIIQGNRQAWRPIRGLPETSVAILRSWLFEHFLHPYPNDSEKLMLSSQTGLSKNQV--------------------------------SNWFINARVRLWKPMIEEMYKEEFAESSVESD-----NLLNREGVTDSAEE 423

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097845 vs. ExPASy TrEMBL
Match: K7KHT6_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 360.918 bits (925), Expect = 6.459e-112
Identity = 214/381 (56.17%), Postives = 252/381 (66.14%), Query Frame = -1

Query:  285 LNSGITSPSYLLSRAEDREACN-PGVG--NLRDDY--NFTVNTFASPSTSLHRSLLTTYGAAESFATAIVNSRYLKPTESLLHELVNIGGKNVD---ENFFGKLYLGDRGGNARLSSELKAEFCSNEMLLPE-NELRIRLAKLIGLLEEVELRYEKYYQQMEEVVSSFESLAGLGAAKSYTALALQAMSRHFGKLRDAIISHINVIRRKFSHDLPRINRGLSQLSLFXXXXXXXXXXXXXXLGMIPRQRQAWRPIRGLPETSVAILRTWLFEHFLHPYPTDSEKLMLASQTGLTKNQV*SLLSICICSIDDLFLFNPNXXXXXXXVKIQISNWFINARVRLWKPMIEEMYKEEFEDSPQDSDPSFASSSMGREGITDQAED 1400
            LN G+ +P+Y +S  E RE CN P V   N+  DY  N    TFAS S   +RS  +T     S+A  I NSRYLKP +SLL +LV++GG  VD   E +  KL+ G RG    LSSELKAE  +N  LL + +E +I++A+LI LL+EVE R EKYY QMEEVVSSFE +AGLGAAK YTALALQAMSRHF  LRDAI+S IN  +RK   DLP+I+ GLSQLSLF     +  +   QQLG+I  QRQ WRPIRGLPETSVAILR+WLFEHFLHPYP DSEKLMLASQTGLTKNQV                                SNWFINARVRLWKPMIEEMYKEEF +  +DS+P+  ++ + RE  TD  ED
Sbjct:   14 LNPGLINPNYFMSGQEAREPCNNPPVEQHNITSDYFYNTGSGTFASSSPLNNRSPNST----SSYAAVIGNSRYLKPVQSLLEDLVDVGGNVVDRINEKYAEKLFRGSRGSARTLSSELKAELGNNGHLLADKHEHQIKIARLITLLDEVEGRCEKYYHQMEEVVSSFEMIAGLGAAKCYTALALQAMSRHFCSLRDAILSQINAEKRKLFQDLPKISSGLSQLSLF-DRDSRQSRMSLQQLGVIRSQRQVWRPIRGLPETSVAILRSWLFEHFLHPYPNDSEKLMLASQTGLTKNQV--------------------------------SNWFINARVRLWKPMIEEMYKEEFGEFSEDSNPA-GNNYLTREDTTDCVED 356

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097845 vs. ExPASy TrEMBL
Match: K4BVF7_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc04g080780.2 PE=4 SV=1)

HSP 1 Score: 357.066 bits (915), Expect = 8.952e-110
Identity = 228/470 (48.51%), Postives = 282/470 (60.00%), Query Frame = -1

Query:  285 QFGGQPFDAYGSTLRGNHNTFPQSLGLLPTIHSLGERMSRSMDLLPSP-IVTDESDISQTRHLMDLLGAANE--TNHQTQRLSLSLGSHMLDPSLNSGITSPSYLLSRAEDREACNPGVGNLRDDYNFTVNTFASPSTSLHRSLLTTYGAAESFATAIVNSRYLKPTESLLHELVNIGGKNVD---ENFFGKLYLGDRGGNARLSSELKAEFCSNEMLLPE-NELRIRLAKLIGLLEEVELRYEKYYQQMEEVVSSFESLAGLGAAKSYTALALQAMSRHFGKLRDAIISHINVIRRKFSHDLPRINRGLSQLSLFXXXXXXXXXXXXXXLGMIPRQRQAWRPIRGLPETSVAILRTWLFEHFLHPYPTDSEKLMLASQTGLTKNQV*SLLSICICSIDDLFLFNPNXXXXXXXVKIQISNWFINARVRLWKPMIEEMYKEEFEDSPQDSDPSFASSSMGREGITDQAED 1673
            Q G Q FD Y S    +  T  Q  G L          SRS++ +  P   TD  D++ +RHLMDLLGA+++  TN Q QRLSLSLGSH L  +  +   +PSY+    + R                  N F+  + ++++S     G  ESF +AI NS+YLKPT+SLL ELV IGGK +D   E F  +L    + G+  L + LK E   N  L  E +EL +++ KLI LLEEVE RYE+YYQ MEEV S+FE +AG GA K+YTALALQAMSRHF  LRD+IIS IN IR+K   D+P+I+ GLS LSLF        +   QQLG+I   RQAW+PIRGLPETSVA LR+WLFEHFLHPYP DSEKLML+SQTGL+KNQV                                SNWFINARVRLWKPMIEEMYKEEF +S  +SD     + + RE +TD AE+
Sbjct:    4 QIGSQHFDMYQS----DTTTAYQPHGGL----------SRSIEFVNHPDFTTDSHDVNHSRHLMDLLGASHDANTNQQAQRLSLSLGSHSLVSTFTN---NPSYMNQEIDQRN-----------------NEFSFSAAAMNQSFSNVCGT-ESFVSAIGNSKYLKPTQSLLEELVCIGGKTIDSSNEKFIRRLSRNSKKGSLSLRAMLKGEIPPNNELFNERHELYVKIMKLIALLEEVERRYEQYYQHMEEVTSTFEVIAGFGAGKAYTALALQAMSRHFCCLRDSIISQINFIRQKMPRDVPKISSGLSHLSLF-EKETLQNRISLQQLGIIQSNRQAWQPIRGLPETSVAFLRSWLFEHFLHPYPNDSEKLMLSSQTGLSKNQV--------------------------------SNWFINARVRLWKPMIEEMYKEEFAESSVESD-----NLLNREAVTDSAEE 400

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097845 vs. ExPASy TrEMBL
Match: A0A0B2SMZ7_GLYSO (BEL1-like homeodomain protein 11 OS=Glycine soja GN=glysoja_023102 PE=4 SV=1)

HSP 1 Score: 353.984 bits (907), Expect = 1.332e-109
Identity = 210/370 (56.76%), Postives = 245/370 (66.22%), Query Frame = -1

Query:  285 LSRAEDREACN-PGVG--NLRDDY--NFTVNTFASPSTSLHRSLLTTYGAAESFATAIVNSRYLKPTESLLHELVNIGGKNVD---ENFFGKLYLGDRGGNARLSSELKAEFCSNEMLLPE-NELRIRLAKLIGLLEEVELRYEKYYQQMEEVVSSFESLAGLGAAKSYTALALQAMSRHFGKLRDAIISHINVIRRKFSHDLPRINRGLSQLSLFXXXXXXXXXXXXXXLGMIPRQRQAWRPIRGLPETSVAILRTWLFEHFLHPYPTDSEKLMLASQTGLTKNQV*SLLSICICSIDDLFLFNPNXXXXXXXVKIQISNWFINARVRLWKPMIEEMYKEEFEDSPQDSDPSFASSSMGREGITDQAED 1367
            +S  E RE CN P V   N+  DY  N    TFAS S   +RS  +T     S+A  I NSRYLKP +SLL +LV++GG  VD   E +  KL+ G RG    LSSELKAE  +N  LL + +E +I++A+LI LL+EVE R EKYY QMEEVVSSFE +AGLGAAK YTALALQAMSRHF  LRDAI+S IN  +RK   DLP+I+ GLSQLSLF     +  +   QQLG+IP QRQ WRPIRGLPETSVAILR+WLFEHFLHPYP DSEKLMLASQTGLTKNQV                                SNWFINARVRLWKPMIEEMYKEEF +  +DS+P+  ++ + RE  TD  ED
Sbjct:    1 MSGQEAREPCNNPPVEQHNITSDYFYNTGSGTFASSSPLNNRSPNST----SSYAAVIGNSRYLKPVQSLLEDLVDVGGNVVDRINEKYAEKLFRGSRGSARTLSSELKAELGNNGHLLADKHEHQIKIARLITLLDEVEGRCEKYYHQMEEVVSSFEMIAGLGAAKCYTALALQAMSRHFCSLRDAILSQINAEKRKLFQDLPKISSGLSQLSLF-DRDSRQSRMSLQQLGVIPSQRQVWRPIRGLPETSVAILRSWLFEHFLHPYPNDSEKLMLASQTGLTKNQV--------------------------------SNWFINARVRLWKPMIEEMYKEEFGEFSEDSNPA-GNNYLTREDTTDCVED 332

The following BLAST results are available for this feature:

BLAST of g.barbadense_cottongen_reftransV1_0097845 vs. ExPASy Swiss-Prot
BLAST of g.barbadense_cottongen_reftransV1_0097845 vs. ExPASy TrEMBL

BLAST of g.barbadense_cottongen_reftransV1_0097845 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 25


Match Name	E-value	Identity	Description
PKNX1_BOVIN	1.615e-9	33.67	Homeobox protein PKNOX1 OS=Bos taurus GN=PKNOX1 PE...	[more]
MEIS2_MOUSE	1.773e-9	33.00	Homeobox protein Meis2 OS=Mus musculus GN=Meis2 PE...	[more]
PKNX1_MOUSE	1.793e-9	33.67	Homeobox protein PKNOX1 OS=Mus musculus GN=Pknox1 ...	[more]
MEIS2_HUMAN	1.804e-9	33.00	Homeobox protein Meis2 OS=Homo sapiens GN=MEIS2 PE...	[more]
PKNX1_HUMAN	1.889e-9	33.67	Homeobox protein PKNOX1 OS=Homo sapiens GN=PKNOX1 ...	[more]

Pages

BLAST of g.barbadense_cottongen_reftransV1_0097845 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A059BQ86_EUCGR	1.869e-122	49.40	Uncharacterized protein OS=Eucalyptus grandis GN=E...	[more]
M0ZWL8_SOLTU	7.799e-121	50.00	Uncharacterized protein OS=Solanum tuberosum GN=PG...	[more]
K7KHT6_SOYBN	6.459e-112	56.17	Uncharacterized protein OS=Glycine max PE=4 SV=1	[more]
K4BVF7_SOLLC	8.952e-110	48.51	Uncharacterized protein OS=Solanum lycopersicum GN...	[more]
A0A0B2SMZ7_GLYSO	1.332e-109	56.76	BEL1-like homeodomain protein 11 OS=Glycine soja G...	[more]

Pages

InterPro

Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 250..277
None	No IPR available	PANTHER	PTHR11850	HOMEOBOX PROTEIN TRANSCRIPTION FACTORS	coord: 177..408
None	No IPR available	PANTHER	PTHR11850:SF132	BEL1-LIKE HOMEODOMAIN PROTEIN 11	coord: 177..408
IPR006563	POX domain	SMART	SM00574	prehox3	coord: 177..311 e-value: 1.6E-28 score: 110.8
IPR006563	POX domain	PFAM	PF07526	POX	coord: 183..309 e-value: 1.8E-33 score: 115.9
IPR008422	Homeobox KN domain	PFAM	PF05920	Homeobox_KN	coord: 379..408 e-value: 5.1E-8 score: 32.5
IPR009057	Homeodomain-like	GENE3D	1.10.10.60		coord: 361..408 e-value: 1.1E-13 score: 50.0
IPR009057	Homeodomain-like	SUPERFAMILY	46689	Homeodomain-like	coord: 357..408

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.barbadense_cottongen_reftransV1_0097845 ID=g.barbadense_cottongen_reftransV1_0097845; Name=g.barbadense_cottongen_reftransV1_0097845; organism=Gossypium barbadense; type=contig; length=2870bp
CCGTCTTTCATTTCTATCATTTCTTCTTGCAGTAAAACTTGAGTTTTGTT
TTACAGCACGAAATTTAACTGCCCCCAGAACTTTGAATTCCATATCATGC
CGTGAGAAAATATATATAAGAGAGGTAAACTCCACAGTTCCACCATTAAG
CTTCAAAAGATGTATTTGGAGTCTAATTATTTTCATATCAAATGCTGAAA
GGTCATTTGTCAACCATCTGATTAAGCCTAAGAATCTTGGTTACAGAATC
AATCTATTTAAAAGTGATGTTTGCTATCCCTTCAATCCTCAGCTTGATCA
GTGATCCCCTCCCTGCCCATGGAACTGCTAGCAAACGATGGATCAGAATC
TTGAGGAGAGTCTTCAAACTCCTCTTTGTACATTTCTTCTATCATAGGCT
TCCACAATCGAACTCGAGCATTTATAAACCAGTTTGATATCTGAATTTTG
ACAATGATAACAAGCACCAAAATATTGGGATTAAAAAGAAATAAATCATC
AATTGAGCAGATGCAAATGGATAGAAGGGATCATACTTGATTCTTGGTCA
GGCCTGTCTGTGATGCTAACATTAGCTTCTCCGAGTCTGTTGGATAAGGG
TGAAGGAAGTGTTCGAAAAGCCAGGTACGAAGGATGGCTACGGAGGTTTC
TGGCAATCCTCTAATAGGCCTCCAAGCTTGCCTTTGCCTTGGGATCATTC
CAAGTTGTTGTTGAAGGGACTGTCGGTTCTGCCTAGAATCTCTATCGAAC
AGGCTAAGCTGCGACAATCCCCGGTTGATTCTCGGTAAATCGTGCGAAAA
CTTTCTTCTGATAACATTAATATGAGATATTATGGCATCCCTTAGTTTTC
CAAAATGCCTGGACATTGCTTGGAGTGCCAAAGCAGTGTACGACTTTGCT
GCTCCTAAACCAGCTAGCGACTCGAATGATGAAACCACTTCTTCCATTTG
CTGGTAGTATTTCTCATATCTGAGCTCAACCTCCTCCAGTAATCCAATCA
GCTTTGCAAGCCTAATTCGGAGCTCGTTTTCGGGCAATAGCATCTCATTA
CTGCAGAATTCTGCTTTTAGTTCAGAGGAAAGTCTTGCATTTCCTCCTCT
GTCGCCTAGATATAACTTCCCAAAGAAATTTTCGTCGACATTTTTGCCAC
CAATATTGACAAGTTCATGTAGGAGGGACTCAGTTGGCTTTAGATACCTC
GAATTCACTATAGCAGTGGCAAATGATTCTGCTGCTCCATACGTAGTCAA
TAGGGATCGGTGCAGTGAGGTGGAAGGTGAAGCAAATGTGTTAACTGTGA
AATTGTAGTCATCCCTTAAGTTTCCCACGCCTGGATTACAAGCTTCTCTA
TCTTCAGCCCTGGAAAGCAAGTAACTAGGACTTGTAATACCAGAATTTAA
GGAAGGATCAAGCATGTGAGAACCGAGAGATAGTGACAGCCTTTGGGTTT
GGTGGTTGGTCTCGTTAGCTGCTCCAAGAAGGTCCATCAAGTGTCTGGTC
TGGCTAATATCTGATTCATCAGTGACAATGGGAGATGGAAGGAGATCCAT
CGATCTGGACATTCTTTCCCCGAGAGAATGAATGGTAGGCAATAAACCAA
GGGACTGGGGAAATGTGTTGTGGTTGCCTCTCAAAGTAGAGCCATAGGCA
TCAAAAGGTTGACCTCCGAATTGGTTTCGGCTATTAATAGGATCCGAGAC
GATAAAATGGTGCAGCATACTGGAAGTTGGATTTGGAGGTGAATCTCGGG
AAACCATAGTGACAGAAATGGAAGCTAAAGGTTTTGAAAGTTGCTAATTG
ACCTTCAAATGCGAGGAGAAGAAATTATTTATCAAGAATCTGGAAGAACA
GTGAGTCAACTAGAATTATTGAGCCATACACATACATACGGAAAGTAAAA
GCAGAGGCAAATTACCATTCCGCGTGAAAAGCATTAAAAGCGAGTTAGGA
ATTAGATAAGACTCTGCTTGAAACAAGGTGGATATATTCATCAACAGATG
ACAAAAAACAAATATGAAAGCTGCTGGGCATTAAACACAGGGCCACCTGA
ATTAATATGGCTGACAAAATTGAAATGGAAACTCTGTGCTGACTTTTGCA
CCCAATGCAGCCGAGATCTAAAGCCACAAATCATGCGATCATAATAAGAT
CCCTAGCCGTAAGCAAGACTTAACCTTGAAAAGAAAACCCTTCAAAACTA
AGCTGATGGGAACCAGGAGAAAGGGAGGGGAAATGCAGTAAAAAATAATG
TAGCCAAGTGATGTGTTAAAAGCATGGATGGAATGAAGTAAACGAATGGT
ATTACTGAAAACAAGACAAAGAAATAAAAAAAAAAACTAAGGAGCCATTT
GTAAGTAACTGAAGACCTGATTCGGATAGATTAACTTTAAGGAACTAACA
ATAAAACCAAAAAGATAATGGAAGTAACCTGTCTTTAATAAGCATAAAAA
ATGGAAGGGAAAGTAAGTAACAAAGCATCCATCTGAATGTGGAAAACTGC
AAATGTACCTTTGTTCATAGTAGCAACAAATGTTAATAAGGCTTTAGAGG
AAAACAATGACTTTTTATCTTACTTCTCTGGGGGAAAAGAAAAAGAATAG
GTCTAATAGACTAATATACTAAGCAGCCAAAACCTATTAGACCTATAGAT
TCATAGGCCTCTGCTAGTTCTTCAAAAAGGCAAAGCTAATTGGCTGAGAA
GAAATGAATAAGACGTCAGGGAAAGATGGTCCCCGACTTCTTCCCTGACT
ATAAAACAAGCAAAAGCATCAATCCTTCAGCTTTAATGCCTGCATTTACA
TTTCTTTGGGAGACTCAAAAGTAGTTTGAGCTCAAAAACTGTGTAAACTC
TCTCTCTCTCTCTCTCTCGC

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR006563	POX_dom
IPR008422	KN_HD
IPR009057	Homeodomain-like_sf

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of DNA-templated transcription

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

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g.barbadense_cottongen_reftransV1_0097845, g.barbadense_cottongen_reftransV1_0097845 (contig) Gossypium barbadense

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