g.barbadense_cottongen_reftransV1_0097845, g.barbadense_cottongen_reftransV1_0097845 (contig) Gossypium barbadense
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0097845 vs. ExPASy Swiss-Prot
Match: PKNX1_BOVIN (Homeobox protein PKNOX1 OS=Bos taurus GN=PKNOX1 PE=2 SV=1) HSP 1 Score: 65.0846 bits (157), Expect = 1.615e-9 Identity = 33/98 (33.67%), Postives = 49/98 (50.00%), Query Frame = -1 Query: 372 RG-LPETSVAILRTWLFEHFLHPYPTDSEKLMLASQTGLTKNQV*SLLSICICSIDDLFLFNPNXXXXXXXVKIQISNWFINARVRLWKPMIEEMYKE 662 RG LP+ + ++R+WLF+H HPYPT+ EK +A+QT LT +Q++NWFINAR R+ +PM++ E Sbjct: 263 RGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLT--------------------------------LLQVNNWFINARRRILQPMLDSSCSE 328
BLAST of g.barbadense_cottongen_reftransV1_0097845 vs. ExPASy Swiss-Prot
Match: MEIS2_MOUSE (Homeobox protein Meis2 OS=Mus musculus GN=Meis2 PE=1 SV=2) HSP 1 Score: 65.0846 bits (157), Expect = 1.773e-9 Identity = 33/100 (33.00%), Postives = 49/100 (49.00%), Query Frame = -1 Query: 366 RGL-PETSVAILRTWLFEHFLHPYPTDSEKLMLASQTGLTKNQV*SLLSICICSIDDLFLFNPNXXXXXXXVKIQISNWFINARVRLWKPMIEEMYKEEF 662 RG+ P+ + I+R WLF+H HPYP++ +K LA TGLT +Q++NWFINAR R+ +PMI++ + F Sbjct: 280 RGIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLT--------------------------------ILQVNNWFINARRRIVQPMIDQSNRAGF 347
BLAST of g.barbadense_cottongen_reftransV1_0097845 vs. ExPASy Swiss-Prot
Match: PKNX1_MOUSE (Homeobox protein PKNOX1 OS=Mus musculus GN=Pknox1 PE=2 SV=3) HSP 1 Score: 64.6994 bits (156), Expect = 1.793e-9 Identity = 33/98 (33.67%), Postives = 49/98 (50.00%), Query Frame = -1 Query: 372 RG-LPETSVAILRTWLFEHFLHPYPTDSEKLMLASQTGLTKNQV*SLLSICICSIDDLFLFNPNXXXXXXXVKIQISNWFINARVRLWKPMIEEMYKE 662 RG LP+ + ++R+WLF+H HPYPT+ EK +A+QT LT +Q++NWFINAR R+ +PM++ E Sbjct: 263 RGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLT--------------------------------LLQVNNWFINARRRILQPMLDSSCSE 328
BLAST of g.barbadense_cottongen_reftransV1_0097845 vs. ExPASy Swiss-Prot
Match: MEIS2_HUMAN (Homeobox protein Meis2 OS=Homo sapiens GN=MEIS2 PE=1 SV=2) HSP 1 Score: 65.0846 bits (157), Expect = 1.804e-9 Identity = 33/100 (33.00%), Postives = 49/100 (49.00%), Query Frame = -1 Query: 366 RGL-PETSVAILRTWLFEHFLHPYPTDSEKLMLASQTGLTKNQV*SLLSICICSIDDLFLFNPNXXXXXXXVKIQISNWFINARVRLWKPMIEEMYKEEF 662 RG+ P+ + I+R WLF+H HPYP++ +K LA TGLT +Q++NWFINAR R+ +PMI++ + F Sbjct: 280 RGIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLT--------------------------------ILQVNNWFINARRRIVQPMIDQSNRAGF 347
BLAST of g.barbadense_cottongen_reftransV1_0097845 vs. ExPASy Swiss-Prot
Match: PKNX1_HUMAN (Homeobox protein PKNOX1 OS=Homo sapiens GN=PKNOX1 PE=1 SV=3) HSP 1 Score: 64.6994 bits (156), Expect = 1.889e-9 Identity = 33/98 (33.67%), Postives = 49/98 (50.00%), Query Frame = -1 Query: 372 RG-LPETSVAILRTWLFEHFLHPYPTDSEKLMLASQTGLTKNQV*SLLSICICSIDDLFLFNPNXXXXXXXVKIQISNWFINARVRLWKPMIEEMYKE 662 RG LP+ + ++R+WLF+H HPYPT+ EK +A+QT LT +Q++NWFINAR R+ +PM++ E Sbjct: 263 RGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLT--------------------------------LLQVNNWFINARRRILQPMLDSSCSE 328
BLAST of g.barbadense_cottongen_reftransV1_0097845 vs. ExPASy TrEMBL
Match: A0A059BQ86_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F01858 PE=4 SV=1) HSP 1 Score: 392.119 bits (1006), Expect = 1.869e-122 Identity = 248/502 (49.40%), Postives = 307/502 (61.16%), Query Frame = -1 Query: 294 MVSRDSPPNPTSSMLHHFIVSDPINSRNQFGGQPFDAYGSTLRGNHNTFPQSLGLLPTIHSLGERMSRSMDLLPSPIVTDESDISQTRHLMDLLGAANETNHQTQRLSLSLGSHMLDPSL---------NSGITSPSYLLSRAEDREACNPGVGNLRDDYNFTVNTFASPSTSLHRSLLTTYGAAESFATAIVNSRYLKPTESLLHELVNIGGKNVD---ENFFGKLYLG-DRGGNARLSSELKAEFCSNEMLLPE-NELRIRLAKLIGLLEEVELRYEKYYQQMEEVVSSFESLAGLGAAKSYTALALQAMSRHFGKLRDAIISHINVIRRKFSHDLPRINRGLSQLSLFXXXXXXXXXXXXXXLGMIPRQRQAWRPIRGLPETSVAILRTWLFEHFLHPYPTDSEKLMLASQTGLTKNQV*SLLSICICSIDDLFLFNPNXXXXXXXVKIQISNWFINARVRLWKPMIEEMYKEEFEDSPQDSDPSFASSSMGREGITDQ 1757 MV+ +SPP+P + H FI + +QF G +YGS LR N+ F + +G +P+I ERM RS++L+ SP+ ES I+ TRHLMDLL AN N Q L+LSL S + +P+ + SPSY++ E REAC+ + FAS S +R T+Y + + I NS YLKP +SLL E+V+I G + E + KLY G +R L SELK EF N L PE +EL+ +LAKL+ LLEEVE R+ KYY MEEV SFES+AGLGAAKSYTALALQAM+RHF LRDAI+S I + R K D RI+ GLS+LSLF+R+ RQ +++ QQLG++ QRQAWRPIRGLPETS+AILR+WLFEHFLHPYP DSEKLMLASQTGLTKN QISNWFINARVRLWKPMIEEMYKEE DS +DS+P S ITD+ Sbjct: 1 MVTHESPPDPMPTAWHRFIPCE-----SQFEGPDLSSYGSALR-NNTAFFEPIGAVPSIQYHRERMPRSINLVHSPVTVAESHITHTRHLMDLLEVANVPN-QAHSLTLSLNSPLPEPNTVQFGHRPLGGTDFNSPSYVVP-GESREACDAS----------NDSEFASSSAPRNRQCFTSY-RPDLVPSIIGNSTYLKPAQSLLEEIVSICGNGAEIANEKYLRKLYGGAERKATLGLVSELKEEF-GNIGLPPEKHELQAKLAKLVSLLEEVEARFMKYYFHMEEVALSFESVAGLGAAKSYTALALQAMTRHFCNLRDAIVSQIKITRIKLFDDSSRISCGLSRLSLFNRECRQKQRNSLQQLGLMHGQRQAWRPIRGLPETSLAILRSWLFEHFLHPYPNDSEKLMLASQTGLTKN--------------------------------QISNWFINARVRLWKPMIEEMYKEEIADSSEDSNPLIKGS------ITDE 444
BLAST of g.barbadense_cottongen_reftransV1_0097845 vs. ExPASy TrEMBL
Match: M0ZWL8_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400003750 PE=4 SV=1) HSP 1 Score: 386.726 bits (992), Expect = 7.799e-121 Identity = 249/498 (50.00%), Postives = 307/498 (61.65%), Query Frame = -1 Query: 285 MVSRDSPPNPTSSMLHHFIVSDPINSRNQFGGQPFDAYGSTLRGNHNTFPQSLGLLPTIHSLGERMSRSMDLLPSP-IVTDESDISQTRHLMDLLGAANE--TNHQTQRLSLSLGSHMLDPSLNSGITSPSYLLSRAEDREACNPGVGNLRDDYNFTVNTFASPSTSLHRSLLTTYGAAESFATAIVNSRYLKPTESLLHELVNIGGKNVD---ENFFGKLYLGDRGGNARLSSELKAEFC-SNEMLLPENELRIRLAKLIGLLEEVELRYEKYYQQMEEVVSSFESLAGLGAAKSYTALALQAMSRHFGKLRDAIISHINVIRRKFSHDLPRINRGLSQLSLFXXXXXXXXXXXXXXLGMIPRQRQAWRPIRGLPETSVAILRTWLFEHFLHPYPTDSEKLMLASQTGLTKNQV*SLLSICICSIDDLFLFNPNXXXXXXXVKIQISNWFINARVRLWKPMIEEMYKEEFEDSPQDSDPSFASSSMGREGITDQAED 1757 MVS+DSPP SS+LH FI SD I + +Q G Q FD Y S + T Q G L SRS++ + P TD D++ +RHLMDLLGA+++ TN Q QRLSLSLGSH L S T+PSY+ N + ++Y+F+ + ++++S G ESF +AI NS+YLKPT+SLL ELV IGGK +D E F +L + G+ L + LK E SNE+ +EL +++ KLI LLEEVE RYE+YYQ MEEV S+FE +A GA K+YT LALQAMSRHF LRDAIIS INVIR+K D+P+I+ GLS LSLF + QQLG+I RQAWRPIRGLPETSVAILR+WLFEHFLHPYP DSEKLML+SQTGL+KNQV SNWFINARVRLWKPMIEEMYKEEF +S +SD + + REG+TD AE+ Sbjct: 1 MVSKDSPPPSHSSILHQFINSDSIMT-SQIGSQHFDMYQS----DTTTAYQPHGGL----------SRSIEFVNHPDFTTDSHDVNHSRHLMDLLGASHDANTNQQAQRLSLSLGSHSLVSSF----TNPSYM----------NQEIDQRNNEYSFS-------AAAMNQSFSNVCGT-ESFVSAIGNSKYLKPTQSLLEELVCIGGKTIDSSNEKFIRRLSRNSKKGSLSLRAMLKGEIPPSNELFNERHELYVKIMKLIVLLEEVERRYEQYYQHMEEVTSTFEVIAAFGAGKAYTVLALQAMSRHFCCLRDAIISQINVIRQKMLRDVPKISSGLSHLSLF-EKETLQNRISLQQLGIIQGNRQAWRPIRGLPETSVAILRSWLFEHFLHPYPNDSEKLMLSSQTGLSKNQV--------------------------------SNWFINARVRLWKPMIEEMYKEEFAESSVESD-----NLLNREGVTDSAEE 423
BLAST of g.barbadense_cottongen_reftransV1_0097845 vs. ExPASy TrEMBL
Match: K7KHT6_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 360.918 bits (925), Expect = 6.459e-112 Identity = 214/381 (56.17%), Postives = 252/381 (66.14%), Query Frame = -1 Query: 285 LNSGITSPSYLLSRAEDREACN-PGVG--NLRDDY--NFTVNTFASPSTSLHRSLLTTYGAAESFATAIVNSRYLKPTESLLHELVNIGGKNVD---ENFFGKLYLGDRGGNARLSSELKAEFCSNEMLLPE-NELRIRLAKLIGLLEEVELRYEKYYQQMEEVVSSFESLAGLGAAKSYTALALQAMSRHFGKLRDAIISHINVIRRKFSHDLPRINRGLSQLSLFXXXXXXXXXXXXXXLGMIPRQRQAWRPIRGLPETSVAILRTWLFEHFLHPYPTDSEKLMLASQTGLTKNQV*SLLSICICSIDDLFLFNPNXXXXXXXVKIQISNWFINARVRLWKPMIEEMYKEEFEDSPQDSDPSFASSSMGREGITDQAED 1400 LN G+ +P+Y +S E RE CN P V N+ DY N TFAS S +RS +T S+A I NSRYLKP +SLL +LV++GG VD E + KL+ G RG LSSELKAE +N LL + +E +I++A+LI LL+EVE R EKYY QMEEVVSSFE +AGLGAAK YTALALQAMSRHF LRDAI+S IN +RK DLP+I+ GLSQLSLF + + QQLG+I QRQ WRPIRGLPETSVAILR+WLFEHFLHPYP DSEKLMLASQTGLTKNQV SNWFINARVRLWKPMIEEMYKEEF + +DS+P+ ++ + RE TD ED Sbjct: 14 LNPGLINPNYFMSGQEAREPCNNPPVEQHNITSDYFYNTGSGTFASSSPLNNRSPNST----SSYAAVIGNSRYLKPVQSLLEDLVDVGGNVVDRINEKYAEKLFRGSRGSARTLSSELKAELGNNGHLLADKHEHQIKIARLITLLDEVEGRCEKYYHQMEEVVSSFEMIAGLGAAKCYTALALQAMSRHFCSLRDAILSQINAEKRKLFQDLPKISSGLSQLSLF-DRDSRQSRMSLQQLGVIRSQRQVWRPIRGLPETSVAILRSWLFEHFLHPYPNDSEKLMLASQTGLTKNQV--------------------------------SNWFINARVRLWKPMIEEMYKEEFGEFSEDSNPA-GNNYLTREDTTDCVED 356
BLAST of g.barbadense_cottongen_reftransV1_0097845 vs. ExPASy TrEMBL
Match: K4BVF7_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc04g080780.2 PE=4 SV=1) HSP 1 Score: 357.066 bits (915), Expect = 8.952e-110 Identity = 228/470 (48.51%), Postives = 282/470 (60.00%), Query Frame = -1 Query: 285 QFGGQPFDAYGSTLRGNHNTFPQSLGLLPTIHSLGERMSRSMDLLPSP-IVTDESDISQTRHLMDLLGAANE--TNHQTQRLSLSLGSHMLDPSLNSGITSPSYLLSRAEDREACNPGVGNLRDDYNFTVNTFASPSTSLHRSLLTTYGAAESFATAIVNSRYLKPTESLLHELVNIGGKNVD---ENFFGKLYLGDRGGNARLSSELKAEFCSNEMLLPE-NELRIRLAKLIGLLEEVELRYEKYYQQMEEVVSSFESLAGLGAAKSYTALALQAMSRHFGKLRDAIISHINVIRRKFSHDLPRINRGLSQLSLFXXXXXXXXXXXXXXLGMIPRQRQAWRPIRGLPETSVAILRTWLFEHFLHPYPTDSEKLMLASQTGLTKNQV*SLLSICICSIDDLFLFNPNXXXXXXXVKIQISNWFINARVRLWKPMIEEMYKEEFEDSPQDSDPSFASSSMGREGITDQAED 1673 Q G Q FD Y S + T Q G L SRS++ + P TD D++ +RHLMDLLGA+++ TN Q QRLSLSLGSH L + + +PSY+ + R N F+ + ++++S G ESF +AI NS+YLKPT+SLL ELV IGGK +D E F +L + G+ L + LK E N L E +EL +++ KLI LLEEVE RYE+YYQ MEEV S+FE +AG GA K+YTALALQAMSRHF LRD+IIS IN IR+K D+P+I+ GLS LSLF + QQLG+I RQAW+PIRGLPETSVA LR+WLFEHFLHPYP DSEKLML+SQTGL+KNQV SNWFINARVRLWKPMIEEMYKEEF +S +SD + + RE +TD AE+ Sbjct: 4 QIGSQHFDMYQS----DTTTAYQPHGGL----------SRSIEFVNHPDFTTDSHDVNHSRHLMDLLGASHDANTNQQAQRLSLSLGSHSLVSTFTN---NPSYMNQEIDQRN-----------------NEFSFSAAAMNQSFSNVCGT-ESFVSAIGNSKYLKPTQSLLEELVCIGGKTIDSSNEKFIRRLSRNSKKGSLSLRAMLKGEIPPNNELFNERHELYVKIMKLIALLEEVERRYEQYYQHMEEVTSTFEVIAGFGAGKAYTALALQAMSRHFCCLRDSIISQINFIRQKMPRDVPKISSGLSHLSLF-EKETLQNRISLQQLGIIQSNRQAWQPIRGLPETSVAFLRSWLFEHFLHPYPNDSEKLMLSSQTGLSKNQV--------------------------------SNWFINARVRLWKPMIEEMYKEEFAESSVESD-----NLLNREAVTDSAEE 400
BLAST of g.barbadense_cottongen_reftransV1_0097845 vs. ExPASy TrEMBL
Match: A0A0B2SMZ7_GLYSO (BEL1-like homeodomain protein 11 OS=Glycine soja GN=glysoja_023102 PE=4 SV=1) HSP 1 Score: 353.984 bits (907), Expect = 1.332e-109 Identity = 210/370 (56.76%), Postives = 245/370 (66.22%), Query Frame = -1 Query: 285 LSRAEDREACN-PGVG--NLRDDY--NFTVNTFASPSTSLHRSLLTTYGAAESFATAIVNSRYLKPTESLLHELVNIGGKNVD---ENFFGKLYLGDRGGNARLSSELKAEFCSNEMLLPE-NELRIRLAKLIGLLEEVELRYEKYYQQMEEVVSSFESLAGLGAAKSYTALALQAMSRHFGKLRDAIISHINVIRRKFSHDLPRINRGLSQLSLFXXXXXXXXXXXXXXLGMIPRQRQAWRPIRGLPETSVAILRTWLFEHFLHPYPTDSEKLMLASQTGLTKNQV*SLLSICICSIDDLFLFNPNXXXXXXXVKIQISNWFINARVRLWKPMIEEMYKEEFEDSPQDSDPSFASSSMGREGITDQAED 1367 +S E RE CN P V N+ DY N TFAS S +RS +T S+A I NSRYLKP +SLL +LV++GG VD E + KL+ G RG LSSELKAE +N LL + +E +I++A+LI LL+EVE R EKYY QMEEVVSSFE +AGLGAAK YTALALQAMSRHF LRDAI+S IN +RK DLP+I+ GLSQLSLF + + QQLG+IP QRQ WRPIRGLPETSVAILR+WLFEHFLHPYP DSEKLMLASQTGLTKNQV SNWFINARVRLWKPMIEEMYKEEF + +DS+P+ ++ + RE TD ED Sbjct: 1 MSGQEAREPCNNPPVEQHNITSDYFYNTGSGTFASSSPLNNRSPNST----SSYAAVIGNSRYLKPVQSLLEDLVDVGGNVVDRINEKYAEKLFRGSRGSARTLSSELKAELGNNGHLLADKHEHQIKIARLITLLDEVEGRCEKYYHQMEEVVSSFEMIAGLGAAKCYTALALQAMSRHFCSLRDAILSQINAEKRKLFQDLPKISSGLSQLSLF-DRDSRQSRMSLQQLGVIPSQRQVWRPIRGLPETSVAILRSWLFEHFLHPYPNDSEKLMLASQTGLTKNQV--------------------------------SNWFINARVRLWKPMIEEMYKEEFGEFSEDSNPA-GNNYLTREDTTDCVED 332 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0097845 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 25
Pages
BLAST of g.barbadense_cottongen_reftransV1_0097845 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0097845 ID=g.barbadense_cottongen_reftransV1_0097845; Name=g.barbadense_cottongen_reftransV1_0097845; organism=Gossypium barbadense; type=contig; length=2870bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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