g.barbadense_cottongen_reftransV1_0097845, g.barbadense_cottongen_reftransV1_0097845 (contig) Gossypium barbadense

Overview


Name	g.barbadense_cottongen_reftransV1_0097845
Unique Name	g.barbadense_cottongen_reftransV1_0097845
Type	contig
Organism	Gossypium barbadense (Sea Island cotton)
Sequence length	2870

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Dt05	chromosome	g.barbadense_cottongen_reftransV1_0097845:1..2870 . Dt05:17483925..17486982 +		n/a

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium barbadense CottonGen RefTrans V1	2016-11-01
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot	2016-11-01
InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1	2016-11-02
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL	2016-11-02

Homology

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097845 vs. ExPASy Swiss-Prot
Match: PKNX1_BOVIN (Homeobox protein PKNOX1 OS=Bos taurus GN=PKNOX1 PE=2 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 1.615e-9
Identity = 33/98 (33.67%), Postives = 49/98 (50.00%), Query Frame = -1

Query:  372 RG-LPETSVAILRTWLFEHFLHPYPTDSEKLMLASQTGLTKNQV*SLLSICICSIDDLFLFNPNXXXXXXXVKIQISNWFINARVRLWKPMIEEMYKE 662
            RG LP+ +  ++R+WLF+H  HPYPT+ EK  +A+QT LT                                 +Q++NWFINAR R+ +PM++    E
Sbjct:  263 RGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLT--------------------------------LLQVNNWFINARRRILQPMLDSSCSE 328

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097845 vs. ExPASy Swiss-Prot
Match: MEIS2_MOUSE (Homeobox protein Meis2 OS=Mus musculus GN=Meis2 PE=1 SV=2)

HSP 1 Score: 65.0846 bits (157), Expect = 1.773e-9
Identity = 33/100 (33.00%), Postives = 49/100 (49.00%), Query Frame = -1

Query:  366 RGL-PETSVAILRTWLFEHFLHPYPTDSEKLMLASQTGLTKNQV*SLLSICICSIDDLFLFNPNXXXXXXXVKIQISNWFINARVRLWKPMIEEMYKEEF 662
            RG+ P+ +  I+R WLF+H  HPYP++ +K  LA  TGLT                                 +Q++NWFINAR R+ +PMI++  +  F
Sbjct:  280 RGIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLT--------------------------------ILQVNNWFINARRRIVQPMIDQSNRAGF 347

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097845 vs. ExPASy Swiss-Prot
Match: PKNX1_MOUSE (Homeobox protein PKNOX1 OS=Mus musculus GN=Pknox1 PE=2 SV=3)

HSP 1 Score: 64.6994 bits (156), Expect = 1.793e-9
Identity = 33/98 (33.67%), Postives = 49/98 (50.00%), Query Frame = -1

Query:  372 RG-LPETSVAILRTWLFEHFLHPYPTDSEKLMLASQTGLTKNQV*SLLSICICSIDDLFLFNPNXXXXXXXVKIQISNWFINARVRLWKPMIEEMYKE 662
            RG LP+ +  ++R+WLF+H  HPYPT+ EK  +A+QT LT                                 +Q++NWFINAR R+ +PM++    E
Sbjct:  263 RGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLT--------------------------------LLQVNNWFINARRRILQPMLDSSCSE 328

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097845 vs. ExPASy Swiss-Prot
Match: MEIS2_HUMAN (Homeobox protein Meis2 OS=Homo sapiens GN=MEIS2 PE=1 SV=2)

HSP 1 Score: 65.0846 bits (157), Expect = 1.804e-9
Identity = 33/100 (33.00%), Postives = 49/100 (49.00%), Query Frame = -1

Query:  366 RGL-PETSVAILRTWLFEHFLHPYPTDSEKLMLASQTGLTKNQV*SLLSICICSIDDLFLFNPNXXXXXXXVKIQISNWFINARVRLWKPMIEEMYKEEF 662
            RG+ P+ +  I+R WLF+H  HPYP++ +K  LA  TGLT                                 +Q++NWFINAR R+ +PMI++  +  F
Sbjct:  280 RGIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLT--------------------------------ILQVNNWFINARRRIVQPMIDQSNRAGF 347

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097845 vs. ExPASy Swiss-Prot
Match: PKNX1_HUMAN (Homeobox protein PKNOX1 OS=Homo sapiens GN=PKNOX1 PE=1 SV=3)

HSP 1 Score: 64.6994 bits (156), Expect = 1.889e-9
Identity = 33/98 (33.67%), Postives = 49/98 (50.00%), Query Frame = -1

Query:  372 RG-LPETSVAILRTWLFEHFLHPYPTDSEKLMLASQTGLTKNQV*SLLSICICSIDDLFLFNPNXXXXXXXVKIQISNWFINARVRLWKPMIEEMYKE 662
            RG LP+ +  ++R+WLF+H  HPYPT+ EK  +A+QT LT                                 +Q++NWFINAR R+ +PM++    E
Sbjct:  263 RGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLT--------------------------------LLQVNNWFINARRRILQPMLDSSCSE 328

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097845 vs. ExPASy TrEMBL
Match: B9GRJ0_POPTR (Homeodomain-containing family protein OS=Populus trichocarpa GN=POPTR_0002s03230g PE=4 SV=1)

HSP 1 Score: 515.383 bits (1326), Expect = 6.659e-170
Identity = 286/481 (59.46%), Postives = 334/481 (69.44%), Query Frame = -1

Query:  348 MVSRDSPPNPTSSMLHHFIVSDPINSRNQFGGQPFDAYGSTLRGNHNTFPQSLGLLPTIHSLGERMSRSMDLLPSPIVTDESDISQTRHLMDLLGAANETNHQTQRLSLSLGSHMLDP-------SLNSGITSPSYLLSRAEDREACNPGVGNLRDDYNFTVNTFASPSTSLHRSLLTTYGAAESFATAIVNSRYLKPTESLLHELVNIGGKNVD---ENFFGKLYLGDRGGNARLSSELKAEFCSNEMLLPE-NELRIRLAKLIGLLEEVELRYEKYYQQMEEVVSSFESLAGLGAAKSYTALALQAMSRHFGKLRDAIISHINVIRRKFSHDLPRINRGLSQLSLFXXXXXXXXXXXXXXLGMIPRQRQAWRPIRGLPETSVAILRTWLFEHFLHPYPTDSEKLMLASQTGLTKNQV*SLLSICICSIDDLFLFNPNXXXXXXXVKIQISNWFINARVRLWKPMIEEMYKEEFEDSPQD 1757
            M S+DSPPNP S MLH FI+SD I S+NQF  Q F  +G  LRG+ NTF QS G+LP+I SL ERMSRS+DL+  P    ES+IS TRHLMDLLGAANETNHQ QRLSLSLGS ML P       S NS + SPSYL+ R E REA N G   + +DY+ T + F   STSL R   T+YG  ESFA AI NSRYLKP +SLL E+V++  + V+   E + GKL+   + G+ RLSSELK E     ++  E +EL++++AKLI LL+EVE RYEKYY QMEEVVSSFE +AGLGAAKSYTALALQAMS+HF  LRDAI+S I+  +RKFS DLP+I+  LSQLSLF     ++ +   QQLGM+  QRQAWRPIRGLPETSV ILR+WLFEHFLHPYP D EKLMLASQ GLTKNQV                                SNWFINARVRLWKPMIEEMYKEEF D  +D
Sbjct:    1 MGSQDSPPNPASGMLHQFIISDSIASQNQFQSQNFSVFGPDLRGS-NTFSQSHGVLPSIKSLEERMSRSIDLVQVPSAVQESEISHTRHLMDLLGAANETNHQAQRLSLSLGSRMLVPQFQYRQRSFNSDLMSPSYLVPREEAREAYNLGGEQVNNDYSLTGSGFPQSSTSLSRPS-TSYGT-ESFAVAIGNSRYLKPAQSLLEEIVHVSCQAVEISNEKYVGKLFPCGQRGSLRLSSELKVELWGIGLVQAEKHELQLKIAKLIALLKEVEGRYEKYYHQMEEVVSSFEEIAGLGAAKSYTALALQAMSKHFCNLRDAIVSQIDETKRKFSRDLPKISTELSQLSLF-DKETKHNRISLQQLGMMQSQRQAWRPIRGLPETSVTILRSWLFEHFLHPYPNDYEKLMLASQAGLTKNQV--------------------------------SNWFINARVRLWKPMIEEMYKEEFADHSED 445

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097845 vs. ExPASy TrEMBL
Match: A5BIM6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001986 PE=4 SV=1)

HSP 1 Score: 514.998 bits (1325), Expect = 1.889e-168
Identity = 285/457 (62.36%), Postives = 325/457 (71.12%), Query Frame = -1

Query:  306 GSTLRGNHNTFPQSLGLLPTIHSLGERMSRSMDLLPSPIVTDESDISQTRHLMDLLGAANETNHQTQRLSLSLGSHMLDPS-------LNSGITSPSYLLSRAEDREACNPGVGNLRDDYNFTVNTFASPSTSLHRSLLTTYGAAESFATAIVNSRYLKPTESLLHELVNIGGKNVD---ENFFGKLYLGDRGGNARLSSELKAEFCSNEMLLPENE-LRIRLAKLIGLLEEVELRYEKYYQQMEEVVSSFESLAGLGAAKSYTALALQAMSRHFGKLRDAIISHINVIRRKFSHDLPRINRGLSQLSLFXXXXXXXXXXXXXXLGMIPRQRQAWRPIRGLPETSVAILRTWLFEHFLHPYPTDSEKLMLASQTGLTKNQV*SLLSICICSIDDLFLFNPNXXXXXXXVKIQISNWFINARVRLWKPMIEEMYKEEFEDSPQDSDPSFASSSMGREG 1643
            GS  +G+ NTFPQSLG+LP+I SLGERMSRS+DL+  P V +ES+IS TRH MDLLGAANE+NHQ  RLSLSLGSH+L PS       LNS   S +YL S  E REACNPGV  L DDY++  + FA+PSTSL+RS  T+YG  ESF  A+ NSRYL+PT+SLL E+VN GGK +D   E + G+L    R G    +SELKAE C N  L  E + ++I +AKLIGLLEEVE RYE+YY QME+VVSSFE +AG+GAAKSYTALALQAM RHF  LRDAIIS INV RRK S DLP+I+ G SQLSLF     +N +   QQLGM    RQAWRPIRGLPETSVAILR+WLFEHFLHPYP DSEKLMLASQTGLTKNQV                                SNWFINARVRLWKPMIEEMYKEEF +S  +SDP  ASSS  REG
Sbjct:   22 GSGGKGS-NTFPQSLGVLPSIQSLGERMSRSIDLVQXPAVGEESEISHTRHFMDLLGAANESNHQAHRLSLSLGSHVLMPSVHYRQRPLNSDFVSSNYLFSGEEAREACNPGVERLCDDYSYVSSAFATPSTSLNRSCSTSYGT-ESFVNAVGNSRYLRPTQSLLEEVVNAGGKAIDLSNEKYIGRLSRSGRRGALGFASELKAELCGNGSLSAEKQDIQIEIAKLIGLLEEVESRYEEYYHQMEDVVSSFEVIAGVGAAKSYTALALQAMFRHFCSLRDAIISQINVARRKLSXDLPKISTGFSQLSLF-DQEGRNXRMXLQQLGMFQSHRQAWRPIRGLPETSVAILRSWLFEHFLHPYPNDSEKLMLASQTGLTKNQV--------------------------------SNWFINARVRLWKPMIEEMYKEEFAESSVESDPLVASSST-REG 442

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097845 vs. ExPASy TrEMBL
Match: M5XRQ5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005361mg PE=4 SV=1)

HSP 1 Score: 499.204 bits (1284), Expect = 2.439e-163
Identity = 290/503 (57.65%), Postives = 346/503 (68.79%), Query Frame = -1

Query:  285 MVSRDSPPNPTSSMLHHFIVSDPINSRNQFGGQPFDAYGSTLRGNHNTFPQSLGLLPTIHSLGERMSRSMDLLPSPIVTDESDIS-QTRHLMDLLGAANETNHQTQRLSLSLGSHMLDPS-------LNSGITSPSYLLSRAEDREACNPGVGNLRDDYNFTVNTFASPSTSLHRSLLTTYGAAESFATAIVNSRYLKPTESLLHELVNIGGKNVD---ENFFGKLYLGDRGGNARLSSELKAEFCSNEML-LPENELRIRLAKLIGLLEEVELRYEKYYQQMEEVVSSFESLAGLGAAKSYTALALQAMSRHFGKLRDAIISHINVIRRKFSHDLPRINRGLSQLSLFXXXXXXXXXXXXXXLGMIPRQRQAWRPIRGLPETSVAILRTWLFEHFLHPYPTDSEKLMLASQTGLTKNQV*SLLSICICSIDDLFLFNPNXXXXXXXVKIQISNWFINARVRLWKPMIEEMYKEEFEDSPQDSDPSFASSSMGREGITDQAED 1757
            MVS+DSPPNP SS+ H FI+SD I ++N    Q  DAY S+ R N NTFPQSLG+LP++HSLGERMSRS+ L+ +P   ++SD++ QTRHLMDL  AA  T +Q QRLSLSLGSHML PS       +NS + S ++ +   E  EACNPGV ++ D+Y F  +  AS S SL RS  T+YG  ES A  I NSRYLKP +SLL E+VN+GGK VD   E   GKLY   R G    SSELKAE C N ++   ++EL+ RLA LI LLE+VE R EKYY QMEEV+SSFE + G GAAKSYTALAL+AMSRHF  LRDAI+SHI   +RK   D+P+I+ GLSQL+LF     ++++   QQLG+   QRQA+RPIRGLPETSVAILRTWLFEHFLHPYP DSEKL+LASQTGL+KNQV                                SNWFINARVRLWKPMIEEMYKEEF +S +DS+ SFA  SM  EG TD  ED
Sbjct:    1 MVSQDSPPNPASSIFHQFIISDSIAAQNHLESQHLDAYESSFR-NRNTFPQSLGVLPSLHSLGERMSRSVALVQAPTGAEDSDMNNQTRHLMDLPRAA--TENQAQRLSLSLGSHMLVPSVQYRQRSMNSDLMSHNHFIIGEESGEACNPGVEHVSDEYCFIGSALASSSNSLSRSCSTSYGT-ESLADVIGNSRYLKPAQSLLDEIVNVGGKQVDISNEKHVGKLYGEGRRGAMGFSSELKAELCCNGLMSADKHELQARLANLITLLEQVEDRCEKYYHQMEEVMSSFEMVVGEGAAKSYTALALKAMSRHFCSLRDAIVSHIYAEKRKLLQDVPKISSGLSQLNLF-DRECRHKRMSLQQLGIFQSQRQAFRPIRGLPETSVAILRTWLFEHFLHPYPNDSEKLLLASQTGLSKNQV--------------------------------SNWFINARVRLWKPMIEEMYKEEFGESSEDSN-SFAGGSMTGEGNTDHTED 465

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097845 vs. ExPASy TrEMBL
Match: B9H4F9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s25350g PE=4 SV=2)

HSP 1 Score: 479.945 bits (1234), Expect = 3.389e-156
Identity = 281/489 (57.46%), Postives = 322/489 (65.85%), Query Frame = -1

Query:  285 MLHHFIVSDPINSRNQFGGQPFDAYGSTLRGNHNTFPQSLGLLPTIHSLGERMSRSMDLLPSPIVTDESDISQTRHLMDLLGAANETNHQTQRLSLSLGSHMLDP-------SLNSGITSPSYLLSRAEDREACNPGVGNLRDDYNFTVNTFASPSTSLHRSLLTTYGAAESFATAIVNSRYLKPTESLLHELVNIGGKNVD---ENFFGKLYLGDRGGNARLSSELKAEFCSNEMLLPE-NELRIRLAKLIGLLEEVELRYEKYYQQMEEVVSSFESLAGLGAAKSYTALALQAMSRHFGKLRDAIISHINVIRRKFSHDLPRINRGLSQLSLFXXXXXXXXXXXXXXLGMIPRQRQAWRPIRGLPETSVAILRTWLFEHFLHPYPTDSEKLMLASQTGLTKNQV*SLLSICICSIDDLFLFNPNXXXXXXXVKIQISNWFINARVRLWKPMIEEMYKEEFEDSPQDSDPSFASSSMGREGITDQAED 1718
            MLH FI SD I S+NQF  Q FDA    L G+ NTFPQS G+LP+I SL ERMSRS+DL+ +P V  ES+IS TRHLM LLGAANETN Q QRLSLSLGSHML P       S NS + S           E  N       +DY+   + F S   SL R   T YG  ESFA AI NSRYLKP +SLL E V++  K V+   E +  +L      G+  LSSELKAE   N ++  E +E+++++AKLI LLEEVE RYEKYY QMEEVVSSFE +AGLGAAKSYTALALQAMS+HF  LRDAI+S IN  RRKFS DLPR + GLS LS F     ++ +   QQLGM   QRQAWRPIRGLPETSVAILR+WLFEHFLHPYP +SEKLMLASQTGLTKNQV                                SNWFINARVRLWKPMIEEMYK EF DS +DS+P   SS + REG+TD +ED
Sbjct:   14 MLHQFIFSDSITSQNQFQNQNFDA----LVGS-NTFPQSHGVLPSIQSLEERMSRSIDLVQAPSVAQESEISHTRHLMSLLGAANETNRQAQRLSLSLGSHMLVPQVQYRQRSFNSDLMS-----------EQAN-------NDYSLIGSGFPSSPASLSRRSTTAYGT-ESFAVAIENSRYLKPAQSLLEETVHVSCKAVEISNEKYVRRLIRCR--GSLGLSSELKAELWGNGLVQAEKHEVQLKIAKLIALLEEVEGRYEKYYHQMEEVVSSFEEMAGLGAAKSYTALALQAMSKHFCNLRDAIVSQINETRRKFSQDLPRTSSGLSPLSFF-DKETKHNRMSLQQLGMTQSQRQAWRPIRGLPETSVAILRSWLFEHFLHPYPNESEKLMLASQTGLTKNQV--------------------------------SNWFINARVRLWKPMIEEMYKVEFADSSEDSNPLPGSSFITREGVTDHSED 443

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097845 vs. ExPASy TrEMBL
Match: V4TF60_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10001116mg PE=4 SV=1)

HSP 1 Score: 449.514 bits (1155), Expect = 2.196e-145
Identity = 255/430 (59.30%), Postives = 298/430 (69.30%), Query Frame = -1

Query:  285 MDLLP--SPIVTDES-DISQTRHLMDLLGAANETNHQTQRLSLSLGSHMLDPSLNSGITSPSYLLSRAEDREACNPGVG-NLRDDYNFTVNTFASPSTSLHRSLLTTYGAAESFATAIVNSRYLKPTESLLHELVNIGGKNVD---ENFFGKLYLGDRGGNARLSSELKAEFCSNEMLLPEN-ELRIRLAKLIGLLEEVELRYEKYYQQMEEVVSSFESLAGLGAAKSYTALALQAMSRHFGKLRDAIISHINVIRRKFSHDLPRINRGLSQLSLFXXXXXXXXXXXXXXLGMIPRQRQAWRPIRGLPETSVAILRTWLFEHFLHPYPTDSEKLMLASQTGLTKNQV*SLLSICICSIDDLFLFNPNXXXXXXXVKIQISNWFINARVRLWKPMIEEMYKEEFEDSPQDSDPSFASSSMGREGITDQAED 1550
            MDL+   +P V +ES +IS TRHLMDLLGA+NETN Q+QRLSLSLGSHML PS +    SP+YL    E RE CNPGV  ++ + Y+F  N       S++R+   +    ESFA A+ NSR+L+P +SLL E+VN+G KN+D   E +  KLY G R G  RLSSELKAE C+   L  E  ELR+R+AKLI LLEEVE +YE YY QMEEVVSS+E +AGLGAAKSYT+LALQAMSRHF  LRDAIIS IN+  R+FS DLP+I+ GLSQLSLF     ++ +   QQLGM   QRQ WRPIRGLPETSV ILR+WLFEHFLHPYP DSEK +LASQTGLTKNQV                                SNWFINARVRLWKPMIEEMY+EEF DS +DS+PSFA SS  REG  DQA D
Sbjct:    1 MDLVHVHAPAVAEESSEISHTRHLMDLLGASNETNDQSQRLSLSLGSHMLVPSGHYN-QSPNYLFYGDEAREVCNPGVDQHVSEGYSFNSN-------SINRA--CSIDGTESFAYAVGNSRFLRPAQSLLEEVVNVG-KNIDMSDERYISKLYHGSRRGGLRLSSELKAEMCNTGTLSAEKQELRLRIAKLISLLEEVESKYEIYYNQMEEVVSSYEVIAGLGAAKSYTSLALQAMSRHFCSLRDAIISQINIASRRFSQDLPKISSGLSQLSLF-DREARHHRMSLQQLGMFHSQRQVWRPIRGLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQV--------------------------------SNWFINARVRLWKPMIEEMYREEFADSSEDSNPSFAGSSATREGGADQAGD 386

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097845 vs. ExPASy TrEMBL
Match: A0A068UG59_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_26 OS=Coffea canephora GN=GSCOC_T00024743001 PE=4 SV=1)

HSP 1 Score: 448.743 bits (1153), Expect = 2.772e-144
Identity = 257/495 (51.92%), Postives = 326/495 (65.86%), Query Frame = -1

Query:  285 MVSRDSPPNPTSSMLHHFIVSDPINSRNQFGGQPFDAYGSTLRGNHNTFPQSLGLLPTIHSLGERMSRSMDLLPSPIVTDESDISQTRHLMDLLGAANETNHQTQRLSLSLGSHMLDPSLNSGITSPSYLLSRAEDREACNPGVGNLRDDYNFTVNTFASPSTSL-HRSLLTTYGAAESFATAIVNSRYLKPTESLLHELVNIGGKNVD---ENFFGKLYLGDRGGNARLSSELKAEFCSNEMLLPENELRIRLAKLIGLLEEVELRYEKYYQQMEEVVSSFESLAGLGAAKSYTALALQAMSRHFGKLRDAIISHINVIRRKFSHDLPRINRGLSQLSLFXXXXXXXXXXXXXXLGMIPRQRQAWRPIRGLPETSVAILRTWLFEHFLHPYPTDSEKLMLASQTGLTKNQV*SLLSICICSIDDLFLFNPNXXXXXXXVKIQISNWFINARVRLWKPMIEEMYKEEFEDSPQDSDPSFASSSMGREGITDQAED 1757
            MVS+DSP NP +S+LH FI+S+ I S+NQFGG+ FDAY + L G  +T+  SLG  P++   GER+ RS+D++ +P +TDESD++  RHLMDLLGA+NE N+  QRLSLSLG+H                      REACNP   ++   Y+F  + FA+ STS  H+S   +YG  E+ A AI NS+YL+P + LL E+V +G K +D   E +  +L    + G+ +L SE+  EF +NE+   ++EL+ +L KLI LLEEVE RYE+YY  M+E+VSSFE +AGLGA KSYTALALQAMSRHF  LR+AI+S I V +RK S D+P+I+  +SQLSLF     ++ +   QQL MI   RQAWRPIRGLPETSVAILR+WLFEHFLHPYP DSEKL LASQTGL+KNQV                                SNWFINARVRLWKPMIEEMYKEEF +S  +S+P     S+ REG  D AED
Sbjct:    1 MVSQDSPSNPNTSILHQFIISNSIASQNQFGGEHFDAYANGLSGG-STY-DSLGSTPSLQCFGERIPRSIDIVNAPQLTDESDVNHPRHLMDLLGASNEANYHAQRLSLSLGTH--------------------NAREACNPRGDSINSSYSFGGSVFAASSTSPNHQSSCISYGT-EALAVAISNSKYLRPAQWLLDEVVKVGSKAIDLSNEKYARRLSSSSKRGSLKLRSEINLEFTNNEVFTEKHELQAKLLKLIALLEEVERRYEQYYHHMDELVSSFEMIAGLGAGKSYTALALQAMSRHFCCLREAILSQIYVTKRKISEDMPKISSDMSQLSLF-DQENRHSRLSLQQLSMIQSSRQAWRPIRGLPETSVAILRSWLFEHFLHPYPNDSEKLTLASQTGLSKNQV--------------------------------SNWFINARVRLWKPMIEEMYKEEFAESYVESNP-----SISREGFADSAED 434

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097845 vs. ExPASy TrEMBL
Match: I1K7P3_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=2)

HSP 1 Score: 431.409 bits (1108), Expect = 1.743e-137
Identity = 267/493 (54.16%), Postives = 317/493 (64.30%), Query Frame = -1

Query:  285 RNQFGGQPFDAYGSTLRGNHNTFPQ-SLGLLPTIHSLGERMSRSMDLLPSPIVTDESDISQTRHLMDLLGAA-NETNHQ--TQRLSLSLGSHMLDPS---------LNSGITSPSYLLSRAEDREACN-PGVG---NLRDDYNFTVNTFASPS-------TSLHRSLLTTYG-AAESFATAIVNSRYLKPTESLLHELVNIGGKNVD---ENFFGKLYLGDRGGNARLSSELKAEFCSNEMLLPENELRIRLAKLIGLLEEVELRYEKYYQQMEEVVSSFESLAGLGAAKSYTALALQAMSRHFGKLRDAIISHINVIRRKFSHDLPRINRGLSQLSLFXXXXXXXXXXXXXXLGMIPRQRQAWRPIRGLPETSVAILRTWLFEHFLHPYPTDSEKLMLASQTGLTKNQV*SLLSICICSIDDLFLFNPNXXXXXXXVKIQISNWFINARVRLWKPMIEEMYKEEFEDSPQDSDPSFASSSMGREGITDQAED 1679
            +NQF  Q  D YGS++R N+ +FP+ SLG  PT  S+G             +V + S+IS TRHLMDLLGAA NE NH    Q LSLSLGSHML PS         LN G+ +P+Y +S  E REACN P V    N+  DY F  NT  S +         L+RS  TT   AAESFA  I NSRYLKP +SLL +LV++GG  VD   + +  KL+ G RG    LSSEL+    +  +L  ++E +I++A+LI LL+EVE R EKYY QMEEVVSSFE +AGLGAAKSYTALALQAMSRHF  LRDAI+SHIN  +RK   DLP+I+ GLSQLSLF     +  +   QQLG+I  QRQ WRPIRGLPETSVAILR+WLFEHFLHPYP DSEKLMLASQTGLTKNQV                                SNWFINARVRLWKPMIEEMYKEEF +S +DS+P+  ++ + RE  TD  ED
Sbjct:    9 QNQFENQDLDTYGSSMRHNNASFPEASLGAFPT--SIG-------------VVAEGSEISHTRHLMDLLGAAANERNHHQTAQGLSLSLGSHMLVPSDEYRHHQRPLNPGLINPNYFMSGQEPREACNNPPVEQQHNITSDYFF--NTAGSCTFASSSSSAPLNRSPNTTTSYAAESFAAVIGNSRYLKPVQSLLEDLVDVGGNVVDRINDKYAEKLFRGSRGSARTLSSELRN---NGHLLAGKHEHQIKIARLITLLDEVEGRCEKYYHQMEEVVSSFEMIAGLGAAKSYTALALQAMSRHFCSLRDAILSHINAEKRKLFQDLPKISSGLSQLSLF-DRDSRQSRMSLQQLGVIQSQRQVWRPIRGLPETSVAILRSWLFEHFLHPYPNDSEKLMLASQTGLTKNQV--------------------------------SNWFINARVRLWKPMIEEMYKEEFGESSEDSNPA-GNNYLTREDTTDCVED 447

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097845 vs. ExPASy TrEMBL
Match: A0A0B2QL78_GLYSO (BEL1-like homeodomain protein 11 OS=Glycine soja GN=glysoja_021981 PE=4 SV=1)

HSP 1 Score: 431.409 bits (1108), Expect = 1.743e-137
Identity = 267/493 (54.16%), Postives = 317/493 (64.30%), Query Frame = -1

Query:  285 RNQFGGQPFDAYGSTLRGNHNTFPQ-SLGLLPTIHSLGERMSRSMDLLPSPIVTDESDISQTRHLMDLLGAA-NETNHQ--TQRLSLSLGSHMLDPS---------LNSGITSPSYLLSRAEDREACN-PGVG---NLRDDYNFTVNTFASPS-------TSLHRSLLTTYG-AAESFATAIVNSRYLKPTESLLHELVNIGGKNVD---ENFFGKLYLGDRGGNARLSSELKAEFCSNEMLLPENELRIRLAKLIGLLEEVELRYEKYYQQMEEVVSSFESLAGLGAAKSYTALALQAMSRHFGKLRDAIISHINVIRRKFSHDLPRINRGLSQLSLFXXXXXXXXXXXXXXLGMIPRQRQAWRPIRGLPETSVAILRTWLFEHFLHPYPTDSEKLMLASQTGLTKNQV*SLLSICICSIDDLFLFNPNXXXXXXXVKIQISNWFINARVRLWKPMIEEMYKEEFEDSPQDSDPSFASSSMGREGITDQAED 1679
            +NQF  Q  D YGS++R N+ +FP+ SLG  PT  S+G             +V + S+IS TRHLMDLLGAA NE NH    Q LSLSLGSHML PS         LN G+ +P+Y +S  E REACN P V    N+  DY F  NT  S +         L+RS  TT   AAESFA  I NSRYLKP +SLL +LV++GG  VD   + +  KL+ G RG    LSSEL+    +  +L  ++E +I++A+LI LL+EVE R EKYY QMEEVVSSFE +AGLGAAKSYTALALQAMSRHF  LRDAI+SHIN  +RK   DLP+I+ GLSQLSLF     +  +   QQLG+I  QRQ WRPIRGLPETSVAILR+WLFEHFLHPYP DSEKLMLASQTGLTKNQV                                SNWFINARVRLWKPMIEEMYKEEF +S +DS+P+  ++ + RE  TD  ED
Sbjct:    9 QNQFENQDLDTYGSSMRHNNASFPEASLGAFPT--SIG-------------VVAEGSEISHTRHLMDLLGAAANERNHHQTAQGLSLSLGSHMLVPSDEYRHHQRPLNPGLINPNYFMSGQEPREACNNPPVEQQHNITSDYFF--NTAGSCTFASSSSSAPLNRSPNTTTSYAAESFAAVIGNSRYLKPVQSLLEDLVDVGGNVVDRINDKYAEKLFRGSRGSARTLSSELRN---NGHLLAGKHEHQIKIARLITLLDEVEGRCEKYYHQMEEVVSSFEMIAGLGAAKSYTALALQAMSRHFCSLRDAILSHINAEKRKLFQDLPKISSGLSQLSLF-DRDSRQSRMSLQQLGVIQSQRQVWRPIRGLPETSVAILRSWLFEHFLHPYPNDSEKLMLASQTGLTKNQV--------------------------------SNWFINARVRLWKPMIEEMYKEEFGESSEDSNPA-GNNYLTREDTTDCVED 447

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097845 vs. ExPASy TrEMBL
Match: A0A072V2D2_MEDTR (BEL1-like homeodomain protein OS=Medicago truncatula GN=MTR_3g112290 PE=4 SV=1)

HSP 1 Score: 421.394 bits (1082), Expect = 1.207e-133
Identity = 263/491 (53.56%), Postives = 318/491 (64.77%), Query Frame = -1

Query:  300 IVSDPINSRNQFGGQPFDAYG---STLRGNHNTFPQSLGLLPTIHSLGERMSRSMDLLPSPIVTDESDISQTRHLMDLLGAANETNHQTQR-LSLSLGSHML-----DPSLNSGI-TSPSYLL-SRAEDREACN-PGVGNLRDDYNFT--VNTFASPSTSLH-----RSLLTTYGAAESFATAIVNSRYLKPTESLLHELVNIGGKNVD---ENFFGKLYLGDRGGNARLSSELKAEF-CSNEMLLPENELRIRLAKLIGLLEEVELRYEKYYQQMEEVVSSFESLAGLGAAKSYTALALQAMSRHFGKLRDAIISHINVIRRKFSHDLPRINRGLSQLSLFXXXXXXXXXXXXXXLGMIPRQRQAWRPIRGLPETSVAILRTWLFEHFLHPYPTDSEKLMLASQTGLTKNQV*SLLSICICSIDDLFLFNPNXXXXXXXVKIQISNWFINARVRLWKPMIEEMYKEEFEDSPQDSDPSFASSSMGREGIT 1703
            ++S+ +  +NQF  Q     G   S+LR N+N + +SLG       L +                 S++S TRHLMDLLGAANE NHQTQ+ LSLSLGSHML     + SLN G+  +PSY +  + + RE CN P V NL  DY F+    TFAS S + +     RS  T+YG+ ESF + I NSRYLKP +SLL +LV++GG  +D   E +  KL+ G R G   LSSELKAE      +L  ++E ++++AKLI LL+EVE RYEKYY QMEEVVSSFE +AGLGAAK YTALALQAMSRHF  LRDAI+S IN  +RK   D+P+IN GLSQLSLF+RD+ +  +   QQLG+I  QRQ WRPIRGLPETSVAILR WLFEHFLHPYP DSEKL+LASQTGLTKNQV                                SNWFINARVRLWKPMIEEMYKEEF DS +DS+P  A++ M RE  T
Sbjct:    1 MMSNSMTHQNQFENQELLGGGYVSSSLR-NNNAYHESLGTFSNNIGLAQG----------------SEMSHTRHLMDLLGAANENNHQTQQGLSLSLGSHMLVDEYRNRSLNQGLMINPSYFMPGQDQTREPCNQPVVENLTSDYFFSGGSGTFASGSNNNNSLLLNRSTSTSYGS-ESFGSVIGNSRYLKPVQSLLEDLVDVGGNVIDRMNEKYAEKLFHGSRTGARTLSSELKAELRIHGHLLADKHEHQVKIAKLISLLDEVEGRYEKYYHQMEEVVSSFEMIAGLGAAKCYTALALQAMSRHFCSLRDAIMSQINAEKRKLFQDVPKINSGLSQLSLFERDNNRQTRMSLQQLGVIQNQRQVWRPIRGLPETSVAILRAWLFEHFLHPYPNDSEKLILASQTGLTKNQV--------------------------------SNWFINARVRLWKPMIEEMYKEEFGDSSEDSNPP-ANNFMSREDST 440

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097845 vs. ExPASy TrEMBL
Match: V7AWL8_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G060500g PE=4 SV=1)

HSP 1 Score: 416.001 bits (1068), Expect = 5.208e-132
Identity = 249/467 (53.32%), Postives = 304/467 (65.10%), Query Frame = -1

Query:  285 NHNTFPQSLGLLPTIHSLGERMSRSMDLLPSPIVTDESDISQTRHLMDLLGAANETNH-QTQRLSLSLGSHMLDPS---------LNSGITSPSYLLSRAEDREACNPGVGNLRDDYNFTV----NTFASPSTS-LHRSLLTT-YGAAESFATAIVNSRYLKPTESLLHELVNIGGKNVD---ENFFGKLYLGDRGGNARLSSELKAEFCSNEMLLPE-NELRIRLAKLIGLLEEVELRYEKYYQQMEEVVSSFESLAGLGAAKSYTALALQAMSRHFGKLRDAIISHINVIRRKFSHDLPRINRGLSQLSLFXXXXXXXXXXXXXXLGMIPRQRQAWRPIRGLPETSVAILRTWLFEHFLHPYPTDSEKLMLASQTGLTKNQV*SLLSICICSIDDLFLFNPNXXXXXXXVKIQISNWFINARVRLWKPMIEEMYKEEFEDSPQDSDPSFASSSMGREGITDQAED 1625
            ++N FP++LG  P+I                  + + S+IS  RH MDLLGAANE+NH Q Q LSLSLGSHML PS         LN+G+ +P++ +   E R ACNP V +L  DY F      NTF S S++ L+RS  +T Y   ESFA+ I NSRYLKP +SLL +LV++GG  VD   E +  K+  G RG    LSSELKAE  +N  LL + +E  I++A+LI LL++ E R EKYY QMEEVVSSFE +AGLGAAK YTALALQAMSRHF  LR+AI+S IN  +RK   DLP+I+ GLSQLSLF     ++ +   QQLG+I  QRQ WRPIRGLPETSVAILR+W+FEHFLHPYP DSEKLMLASQTGLTKNQV                                SNWFINARVRLWKPMIEEMYK+EF +S +DS+P+ A++ + RE  TD  ED
Sbjct:    8 HNNAFPEALGAFPSIG-----------------MAEGSEISHPRHFMDLLGAANESNHHQPQGLSLSLGSHMLIPSDEYRHHQRPLNTGLINPNFFMPGQEARVACNPPVEHLTSDYFFNTDTGTNTFVSSSSAPLNRSPNSTPYAPPESFASVIGNSRYLKPVQSLLEDLVDVGGNVVDRINEKYVEKMLHGSRGVRI-LSSELKAELRNNGPLLADKHEHHIKIARLISLLDKAEGRCEKYYHQMEEVVSSFEMIAGLGAAKCYTALALQAMSRHFCSLREAILSQINAEKRKLFQDLPKISSGLSQLSLF-DRDIRHSRMSLQQLGVIQSQRQVWRPIRGLPETSVAILRSWIFEHFLHPYPNDSEKLMLASQTGLTKNQV--------------------------------SNWFINARVRLWKPMIEEMYKDEFGESSEDSNPA-ANNCLTREDTTDCVED 422

The following BLAST results are available for this feature:

BLAST of g.barbadense_cottongen_reftransV1_0097845 vs. ExPASy Swiss-Prot
BLAST of g.barbadense_cottongen_reftransV1_0097845 vs. ExPASy TrEMBL

BLAST of g.barbadense_cottongen_reftransV1_0097845 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 25


Match Name	E-value	Identity	Description
PKNX1_BOVIN	1.615e-9	33.67	Homeobox protein PKNOX1 OS=Bos taurus GN=PKNOX1 PE...	[more]
MEIS2_MOUSE	1.773e-9	33.00	Homeobox protein Meis2 OS=Mus musculus GN=Meis2 PE...	[more]
PKNX1_MOUSE	1.793e-9	33.67	Homeobox protein PKNOX1 OS=Mus musculus GN=Pknox1 ...	[more]
MEIS2_HUMAN	1.804e-9	33.00	Homeobox protein Meis2 OS=Homo sapiens GN=MEIS2 PE...	[more]
PKNX1_HUMAN	1.889e-9	33.67	Homeobox protein PKNOX1 OS=Homo sapiens GN=PKNOX1 ...	[more]

Pages

BLAST of g.barbadense_cottongen_reftransV1_0097845 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
B9GRJ0_POPTR	6.659e-170	59.46	Homeodomain-containing family protein OS=Populus t...	[more]
A5BIM6_VITVI	1.889e-168	62.36	Putative uncharacterized protein OS=Vitis vinifera...	[more]
M5XRQ5_PRUPE	2.439e-163	57.65	Uncharacterized protein OS=Prunus persica GN=PRUPE...	[more]
B9H4F9_POPTR	3.389e-156	57.46	Uncharacterized protein OS=Populus trichocarpa GN=...	[more]
V4TF60_9ROSI	2.196e-145	59.30	Uncharacterized protein OS=Citrus clementina GN=CI...	[more]
A0A068UG59_COFCA	2.772e-144	51.92	Coffea canephora DH200=94 genomic scaffold, scaffo...	[more]
I1K7P3_SOYBN	1.743e-137	54.16	Uncharacterized protein OS=Glycine max PE=4 SV=2	[more]
A0A0B2QL78_GLYSO	1.743e-137	54.16	BEL1-like homeodomain protein 11 OS=Glycine soja G...	[more]
A0A072V2D2_MEDTR	1.207e-133	53.56	BEL1-like homeodomain protein OS=Medicago truncatu...	[more]
V7AWL8_PHAVU	5.208e-132	53.32	Uncharacterized protein OS=Phaseolus vulgaris GN=P...	[more]

Pages

InterPro

Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 250..277
None	No IPR available	PANTHER	PTHR11850	HOMEOBOX PROTEIN TRANSCRIPTION FACTORS	coord: 177..408
None	No IPR available	PANTHER	PTHR11850:SF132	BEL1-LIKE HOMEODOMAIN PROTEIN 11	coord: 177..408
IPR006563	POX domain	SMART	SM00574	prehox3	coord: 177..311 e-value: 1.6E-28 score: 110.8
IPR006563	POX domain	PFAM	PF07526	POX	coord: 183..309 e-value: 1.8E-33 score: 115.9
IPR008422	Homeobox KN domain	PFAM	PF05920	Homeobox_KN	coord: 379..408 e-value: 5.1E-8 score: 32.5
IPR009057	Homeodomain-like	GENE3D	1.10.10.60		coord: 361..408 e-value: 1.1E-13 score: 50.0
IPR009057	Homeodomain-like	SUPERFAMILY	46689	Homeodomain-like	coord: 357..408

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.barbadense_cottongen_reftransV1_0097845 ID=g.barbadense_cottongen_reftransV1_0097845; Name=g.barbadense_cottongen_reftransV1_0097845; organism=Gossypium barbadense; type=contig; length=2870bp
CCGTCTTTCATTTCTATCATTTCTTCTTGCAGTAAAACTTGAGTTTTGTT
TTACAGCACGAAATTTAACTGCCCCCAGAACTTTGAATTCCATATCATGC
CGTGAGAAAATATATATAAGAGAGGTAAACTCCACAGTTCCACCATTAAG
CTTCAAAAGATGTATTTGGAGTCTAATTATTTTCATATCAAATGCTGAAA
GGTCATTTGTCAACCATCTGATTAAGCCTAAGAATCTTGGTTACAGAATC
AATCTATTTAAAAGTGATGTTTGCTATCCCTTCAATCCTCAGCTTGATCA
GTGATCCCCTCCCTGCCCATGGAACTGCTAGCAAACGATGGATCAGAATC
TTGAGGAGAGTCTTCAAACTCCTCTTTGTACATTTCTTCTATCATAGGCT
TCCACAATCGAACTCGAGCATTTATAAACCAGTTTGATATCTGAATTTTG
ACAATGATAACAAGCACCAAAATATTGGGATTAAAAAGAAATAAATCATC
AATTGAGCAGATGCAAATGGATAGAAGGGATCATACTTGATTCTTGGTCA
GGCCTGTCTGTGATGCTAACATTAGCTTCTCCGAGTCTGTTGGATAAGGG
TGAAGGAAGTGTTCGAAAAGCCAGGTACGAAGGATGGCTACGGAGGTTTC
TGGCAATCCTCTAATAGGCCTCCAAGCTTGCCTTTGCCTTGGGATCATTC
CAAGTTGTTGTTGAAGGGACTGTCGGTTCTGCCTAGAATCTCTATCGAAC
AGGCTAAGCTGCGACAATCCCCGGTTGATTCTCGGTAAATCGTGCGAAAA
CTTTCTTCTGATAACATTAATATGAGATATTATGGCATCCCTTAGTTTTC
CAAAATGCCTGGACATTGCTTGGAGTGCCAAAGCAGTGTACGACTTTGCT
GCTCCTAAACCAGCTAGCGACTCGAATGATGAAACCACTTCTTCCATTTG
CTGGTAGTATTTCTCATATCTGAGCTCAACCTCCTCCAGTAATCCAATCA
GCTTTGCAAGCCTAATTCGGAGCTCGTTTTCGGGCAATAGCATCTCATTA
CTGCAGAATTCTGCTTTTAGTTCAGAGGAAAGTCTTGCATTTCCTCCTCT
GTCGCCTAGATATAACTTCCCAAAGAAATTTTCGTCGACATTTTTGCCAC
CAATATTGACAAGTTCATGTAGGAGGGACTCAGTTGGCTTTAGATACCTC
GAATTCACTATAGCAGTGGCAAATGATTCTGCTGCTCCATACGTAGTCAA
TAGGGATCGGTGCAGTGAGGTGGAAGGTGAAGCAAATGTGTTAACTGTGA
AATTGTAGTCATCCCTTAAGTTTCCCACGCCTGGATTACAAGCTTCTCTA
TCTTCAGCCCTGGAAAGCAAGTAACTAGGACTTGTAATACCAGAATTTAA
GGAAGGATCAAGCATGTGAGAACCGAGAGATAGTGACAGCCTTTGGGTTT
GGTGGTTGGTCTCGTTAGCTGCTCCAAGAAGGTCCATCAAGTGTCTGGTC
TGGCTAATATCTGATTCATCAGTGACAATGGGAGATGGAAGGAGATCCAT
CGATCTGGACATTCTTTCCCCGAGAGAATGAATGGTAGGCAATAAACCAA
GGGACTGGGGAAATGTGTTGTGGTTGCCTCTCAAAGTAGAGCCATAGGCA
TCAAAAGGTTGACCTCCGAATTGGTTTCGGCTATTAATAGGATCCGAGAC
GATAAAATGGTGCAGCATACTGGAAGTTGGATTTGGAGGTGAATCTCGGG
AAACCATAGTGACAGAAATGGAAGCTAAAGGTTTTGAAAGTTGCTAATTG
ACCTTCAAATGCGAGGAGAAGAAATTATTTATCAAGAATCTGGAAGAACA
GTGAGTCAACTAGAATTATTGAGCCATACACATACATACGGAAAGTAAAA
GCAGAGGCAAATTACCATTCCGCGTGAAAAGCATTAAAAGCGAGTTAGGA
ATTAGATAAGACTCTGCTTGAAACAAGGTGGATATATTCATCAACAGATG
ACAAAAAACAAATATGAAAGCTGCTGGGCATTAAACACAGGGCCACCTGA
ATTAATATGGCTGACAAAATTGAAATGGAAACTCTGTGCTGACTTTTGCA
CCCAATGCAGCCGAGATCTAAAGCCACAAATCATGCGATCATAATAAGAT
CCCTAGCCGTAAGCAAGACTTAACCTTGAAAAGAAAACCCTTCAAAACTA
AGCTGATGGGAACCAGGAGAAAGGGAGGGGAAATGCAGTAAAAAATAATG
TAGCCAAGTGATGTGTTAAAAGCATGGATGGAATGAAGTAAACGAATGGT
ATTACTGAAAACAAGACAAAGAAATAAAAAAAAAAACTAAGGAGCCATTT
GTAAGTAACTGAAGACCTGATTCGGATAGATTAACTTTAAGGAACTAACA
ATAAAACCAAAAAGATAATGGAAGTAACCTGTCTTTAATAAGCATAAAAA
ATGGAAGGGAAAGTAAGTAACAAAGCATCCATCTGAATGTGGAAAACTGC
AAATGTACCTTTGTTCATAGTAGCAACAAATGTTAATAAGGCTTTAGAGG
AAAACAATGACTTTTTATCTTACTTCTCTGGGGGAAAAGAAAAAGAATAG
GTCTAATAGACTAATATACTAAGCAGCCAAAACCTATTAGACCTATAGAT
TCATAGGCCTCTGCTAGTTCTTCAAAAAGGCAAAGCTAATTGGCTGAGAA
GAAATGAATAAGACGTCAGGGAAAGATGGTCCCCGACTTCTTCCCTGACT
ATAAAACAAGCAAAAGCATCAATCCTTCAGCTTTAATGCCTGCATTTACA
TTTCTTTGGGAGACTCAAAAGTAGTTTGAGCTCAAAAACTGTGTAAACTC
TCTCTCTCTCTCTCTCTCGC

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR006563	POX_dom
IPR008422	KN_HD
IPR009057	Homeodomain-like_sf

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of DNA-templated transcription

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Search form

g.barbadense_cottongen_reftransV1_0097845, g.barbadense_cottongen_reftransV1_0097845 (contig) Gossypium barbadense

Pages

Pages