g.barbadense_cottongen_reftransV1_0097844, g.barbadense_cottongen_reftransV1_0097844 (contig) Gossypium barbadense

Overview
Nameg.barbadense_cottongen_reftransV1_0097844
Unique Nameg.barbadense_cottongen_reftransV1_0097844
Typecontig
OrganismGossypium barbadense (Sea Island cotton)
Sequence length1881
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Dt13chromosomeg.barbadense_cottongen_reftransV1_0097844:1..1881 .
Dt13:8506635..8508515 +
Homology
BLAST of g.barbadense_cottongen_reftransV1_0097844 vs. ExPASy TrEMBL
Match: W9SAN6_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_023073 PE=4 SV=1)

HSP 1 Score: 634.41 bits (1635), Expect = 0.000e+0
Identity = 306/418 (73.21%), Postives = 357/418 (85.41%), Query Frame = 2
Query:  224 LQALLDSSRPFLRGELQYVDKNLPNLVAVLRSVGAGECWHKHGSFLEHLVDIYRILKIWKAQDSVCLCGLFHSAYSNSYVNLAIFDPSTGRDVVRGHVGDAAERLIHLFCVVPRQPLIHDDLLFKYTDSEIVEHLAASEVSLKNAKEKGVFNEDEAWRNKIRGLVPENGHTVKHIKTGEDVLVSRRVLAIFLMMTMADFSDQLYGFQDVLFENFDGRLEFVGNNNV-ALWPGNGKPGLWLNSISRMGAIYSLILREEEIFVEQRKRVSGXXXXXXXXXXX-----XLVVPPVFEHCSKVLGAKEQIEARDLYWEAVCDDSKGGQERAEELLLGSIEKNPFVGEPHVVLAQVYLTKGRFEEAEKEAEKGLILMLQWSSPWDKRMSWEGWIAWGRVLWMKAKEQSWPQTSWGVLNLGLVK 1459
            LQ +LDS+RPFLRG+L+ +D+ LP+LVAVLRSVGAGECWHKHGSFL+HLVD YRILK+WKAQDSVCLCGLFHSAYSNSYVNLAIFDPSTGRDVV   VG+AAERLIHLFCVVPRQ LIHDDLLF Y+++E++EHL  SE+S++NAKE+GVF+ +E WR K+  ++P +G  VKHIK GEDV VSRR++A+FLMMTMADFSDQ++GFQD LFEN++GRLEF GNN    LWPG+GKPGLW+NSISRMGA+YSLI+REEEIFVE+RKR  G        +       ELV+PPVFE+C+K+L A +QI ARDLYWEAVCD SK G ER EELLL  +EKNPFVGEPHVVL QVYL K  FEEAE+EAEKGL L+L+W SPWDKRMSWEGW+AW RVL MKAKE+SWPQT+WG+LNLGLVK
Sbjct:   20 LQTVLDSARPFLRGDLESIDEKLPSLVAVLRSVGAGECWHKHGSFLDHLVDTYRILKLWKAQDSVCLCGLFHSAYSNSYVNLAIFDPSTGRDVVAKLVGEAAERLIHLFCVVPRQSLIHDDLLFHYSETELLEHLKFSEISVRNAKERGVFDGEEGWRKKLNCVLPSDGVVVKHIKNGEDVKVSRRLVAVFLMMTMADFSDQIFGFQDALFENYNGRLEFKGNNVAGGLWPGDGKPGLWMNSISRMGALYSLIVREEEIFVEERKRACGDHDHDHDHDQRDDEDLELVIPPVFENCTKILDAGDQIVARDLYWEAVCDVSKRGLERTEELLLRCVEKNPFVGEPHVVLGQVYLGKMMFEEAEREAEKGLRLILEWGSPWDKRMSWEGWVAWARVLVMKAKEKSWPQTAWGILNLGLVK 437          
BLAST of g.barbadense_cottongen_reftransV1_0097844 vs. ExPASy TrEMBL
Match: Q0WTF1_ARATH (Putative uncharacterized protein At3g19990 (Fragment) OS=Arabidopsis thaliana GN=At3g19990 PE=2 SV=1)

HSP 1 Score: 633.639 bits (1633), Expect = 0.000e+0
Identity = 311/412 (75.49%), Postives = 361/412 (87.62%), Query Frame = 2
Query:  236 LDSSRPFLRGELQYVDKNLPNLVAVLRSVGAGECWHKHGSFLEHLVDIYRILKIWKAQDSVCLCGLFHSAYSNSYVNLAIFDPSTGRDVVRGHVGDAAERLIHLFCVVPRQPLIHDDLLFKYTDSEIVEHLAASEVSLKNAKEKGVFNEDEAWRNKIRGLVPENGHTVKHIKTGEDVLVSRRVLAIFLMMTMADFSDQLYGFQDVLFENFDGRLEFVGNNNVALWPGNGKPGLWLNSISRMGAIYSLILREEEIFVEQRKRV--SGXXXXXXXXXXXXLVVPPVFEHCSKVLGAKEQIEARDLYWEAVCDDS--KGGQERAEELLLGSIEKNPFVGEPHVVLAQVYLTKGRFEEAEKEAEKGLILMLQWSSPWDKRMSWEGWIAWGRVLWMKAKEQSWPQTSWGVLNLGLVK 1459
            L+S+RPFLRGEL+ +D  LP+L+AVL+SVGAGECWHKHGSFL+HL+DIY+ILK+WKA +SVCLCGLFHSAYSNSYVNLAIFDPSTGRDVVR HVG+AAE LIHLFCVVPRQ LIHD+LLFKY+D E+VEHL  SEVSL+NAKEKG+F+ DE WR KI  LVPENG  VKHIKTGE+++VSRRV+ +FL+MTMADFSDQL+GFQD LF N DGRLEF GNN  ALWPGNGKPGLW+NS SRMGAIYSLI+REEEI +E+R+R   SG E+  +RDEDI+LVVPPVF  C+KVL AKEQIEAR++YWE V  D+  +G  ERAEE LLG IEKNPFVGEPHV+L+QVYL K RF+EAE+EAEKGL+L+LQW SPWDKRMSWEGWIAW RVL MK+++QSWP  SWG+LNLGLV+
Sbjct:    1 LESARPFLRGELEKIDPKLPSLIAVLKSVGAGECWHKHGSFLDHLIDIYKILKLWKAPESVCLCGLFHSAYSNSYVNLAIFDPSTGRDVVRDHVGEAAESLIHLFCVVPRQTLIHDELLFKYSDCELVEHLDCSEVSLRNAKEKGIFDGDEEWRKKINALVPENGVVVKHIKTGEEIVVSRRVVGVFLLMTMADFSDQLFGFQDELFCNHDGRLEFRGNNVTALWPGNGKPGLWMNSNSRMGAIYSLIVREEEILMEERRRAFGSGFEVRKERDEDIDLVVPPVFSFCTKVLDAKEQIEAREMYWEVVSSDTSKEGYLERAEERLLGCIEKNPFVGEPHVLLSQVYLGKKRFKEAEREAEKGLLLLLQWGSPWDKRMSWEGWIAWVRVLLMKSQDQSWPDVSWGILNLGLVR 412          
BLAST of g.barbadense_cottongen_reftransV1_0097844 vs. ExPASy TrEMBL
Match: V4LVM2_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10020793mg PE=4 SV=1)

HSP 1 Score: 633.254 bits (1632), Expect = 0.000e+0
Identity = 311/413 (75.30%), Postives = 360/413 (87.17%), Query Frame = 2
Query:  233 LLDSSRPFLRGELQYVDKNLPNLVAVLRSVGAGECWHKHGSFLEHLVDIYRILKIWKAQDSVCLCGLFHSAYSNSYVNLAIFDPSTGRDVVRGHVGDAAERLIHLFCVVPRQPLIHDDLLFKYTDSEIVEHLAASEVSLKNAKEKGVFNEDEAWRNKIRGLVPENGHTVKHIKTGEDVLVSRRVLAIFLMMTMADFSDQLYGFQDVLFENFDGRLEFVGNNNVALWPGNGKPGLWLNSISRMGAIYSLILREEEIFVEQRKRVSGX--XXXXXXXXXXXLVVPPVFEHCSKVLGAKEQIEARDLYWEAVCDD--SKGGQERAEELLLGSIEKNPFVGEPHVVLAQVYLTKGRFEEAEKEAEKGLILMLQWSSPWDKRMSWEGWIAWGRVLWMKAKEQSWPQTSWGVLNLGLVK 1459
            +L+ +RPFLRGEL+ +D  LP+L+AVL+SVGAGECWHKHGSFL+HL+DIY+ILK+WKA +SVCLCGLFHSAYSNSYVNLAIFDPSTGRDVVR HVG+AAE LIHLFCV+PRQ LIHDDLLF Y+D E+VEHL  SEVSL+NAKEKGVF+ DEAWR K+  LVPENG  +KHIKTGE++LVSRRV+ +FL+MTMADFSDQL+GFQD LF N DGRLEF GNN  ALWPGNGKPGLWLNS SRMGAIYSLI+REEEI +E+RKR SG    +  +RDEDIELV+PPVF  C+KVL AKEQIEARD+YWEAV  D   +G  ERAEE LLG IEKNPFVGEPHV+L+QVYL K RF+EAE+EAE+GL+L+LQW SPWDKRMSWEGW+AW RVL MK+++QSWP  SWG+LNLGLV+
Sbjct:   13 VLELARPFLRGELEKIDPKLPSLIAVLKSVGAGECWHKHGSFLDHLIDIYKILKLWKAPESVCLCGLFHSAYSNSYVNLAIFDPSTGRDVVRDHVGEAAESLIHLFCVIPRQSLIHDDLLFNYSDPELVEHLDCSEVSLRNAKEKGVFDGDEAWRKKLNALVPENGVVLKHIKTGEEILVSRRVVGVFLLMTMADFSDQLFGFQDELFCNHDGRLEFRGNNATALWPGNGKPGLWLNSNSRMGAIYSLIVREEEILMEERKRASGSGFVLRRERDEDIELVLPPVFSFCTKVLDAKEQIEARDMYWEAVSSDPSKEGYLERAEERLLGCIEKNPFVGEPHVLLSQVYLGKKRFKEAEREAERGLLLLLQWGSPWDKRMSWEGWVAWVRVLLMKSQDQSWPDVSWGILNLGLVR 425          
BLAST of g.barbadense_cottongen_reftransV1_0097844 vs. ExPASy TrEMBL
Match: A0A078GJK2_BRANA (BnaA05g19170D protein OS=Brassica napus GN=BnaA05g19170D PE=4 SV=1)

HSP 1 Score: 624.394 bits (1609), Expect = 0.000e+0
Identity = 306/413 (74.09%), Postives = 357/413 (86.44%), Query Frame = 2
Query:  233 LLDSSRPFLRGELQYVDKNLPNLVAVLRSVGAGECWHKHGSFLEHLVDIYRILKIWKAQDSVCLCGLFHSAYSNSYVNLAIFDPSTGRDVVRGHVGDAAERLIHLFCVVPRQPLIHDDLLFKYTDSEIVEHLAASEVSLKNAKEKGVFNEDEAWRNKIRGLVPENGHTVKHIKTGEDVLVSRRVLAIFLMMTMADFSDQLYGFQDVLFENFDGRLEFVGNNNVALWPGNGKPGLWLNSISRMGAIYSLILREEEIFVEQRKRVSGX--XXXXXXXXXXXLVVPPVFEHCSKVLGAKEQIEARDLYWEAVCDDS--KGGQERAEELLLGSIEKNPFVGEPHVVLAQVYLTKGRFEEAEKEAEKGLILMLQWSSPWDKRMSWEGWIAWGRVLWMKAKEQSWPQTSWGVLNLGLVK 1459
            +L  +RPFLRGEL+ ++  LP+L+AVL+SVGAGECWHKHG+FL+HLVD+Y+ILK+WKA + VCLCGLFHSAYSNSYVNLAIFDPSTGRDVVRGHVG+AAE L+HLFCV+PRQ LIHDD+LFKY+D E+VEHL  SEVSL+NAKEKGVF+ +E WR K+ GLVPENG  VKHIKTGE++LVSRRV+ +FL++TMADFSDQ +GFQD LF N DGRLEF GNN  ALWPGNGKPGLW+NS SRMGAIYSLI+REEEI +EQRKR  G       +RDEDIELVVPPVF  C+KVL AKEQIEARD+YWEAV  D+  +G  ERAE++LLG IEKNPFVGEPHV+L+QVYL K RF EAE+EAE+GL+L+LQW SPWDKRMSWEGWIAW RVL MK+ +QSWP  SWG+LNLGLV+
Sbjct:    9 VLQLARPFLRGELEKINPKLPSLMAVLKSVGAGECWHKHGNFLDHLVDVYKILKLWKAPEPVCLCGLFHSAYSNSYVNLAIFDPSTGRDVVRGHVGEAAESLVHLFCVIPRQTLIHDDVLFKYSDLELVEHLELSEVSLRNAKEKGVFDGEEVWRKKLNGLVPENGVVVKHIKTGEEILVSRRVVGVFLLITMADFSDQFFGFQDELFCNNDGRLEFRGNNVTALWPGNGKPGLWMNSSSRMGAIYSLIVREEEILMEQRKRGYGSEFVARKERDEDIELVVPPVFSFCTKVLDAKEQIEARDMYWEAVSSDASKEGYLERAEKMLLGCIEKNPFVGEPHVLLSQVYLGKKRFVEAEREAERGLVLLLQWGSPWDKRMSWEGWIAWVRVLLMKSHDQSWPDVSWGILNLGLVR 421          
BLAST of g.barbadense_cottongen_reftransV1_0097844 vs. ExPASy TrEMBL
Match: R0I2Q8_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10013769mg PE=4 SV=1)

HSP 1 Score: 623.624 bits (1607), Expect = 0.000e+0
Identity = 309/413 (74.82%), Postives = 357/413 (86.44%), Query Frame = 2
Query:  233 LLDSSRPFLRGELQYVDKNLPNLVAVLRSVGAGECWHKHGSFLEHLVDIYRILKIWKAQDSVCLCGLFHSAYSNSYVNLAIFDPSTGRDVVRGHVGDAAERLIHLFCVVPRQPLIHDDLLFKYTDSEIVEHLAASEVSLKNAKEKGVFNEDEAWRNKIRGLVPENGHTVKHIKTGEDVLVSRRVLAIFLMMTMADFSDQLYGFQDVLFENFDGRLEFVGNNNVALWPGNGKPGLWLNSISRMGAIYSLILREEEIFVEQRKRVSGX--XXXXXXXXXXXLVVPPVFEHCSKVLGAKEQIEARDLYWEAVCDDS--KGGQERAEELLLGSIEKNPFVGEPHVVLAQVYLTKGRFEEAEKEAEKGLILMLQWSSPWDKRMSWEGWIAWGRVLWMKAKEQSWPQTSWGVLNLGLVK 1459
            LL+S+RPFLRGEL+ +D  LP+L+AVL+SVGAGECWHKHGSFL+HL+DIY+ILK+WKA +SVCLCGLFHSAYSNSYVNLAIFDPSTGRDVVR HVG+AAE LIHLFCVVPRQ LIHDDLLFKY+D E+VEHL  SEVSL+NAKEKGVF+ DE WR K+ GLVPENG  VKHIKTGE+++VSRRV+A+FL+MTMADFSDQL+GFQD LF N DGRLEF GNN  ALWPGNGKPGLW+NS SRMGAIYSLI+REEEI +EQR+RVSG    +  +RDEDI+LV+PPVF  C+K       IEAR++YWE V  D+  +G  ERAEE LLG IEKNPFVGEPHV+L+QVYL K RF+EAE EAEKGL+L+LQW SPWDKRMSWEGWIAW RVL MK+++QSWP  SWG+LNLGLV+
Sbjct:   14 LLESARPFLRGELEKIDPKLPSLIAVLKSVGAGECWHKHGSFLDHLIDIYKILKLWKAPESVCLCGLFHSAYSNSYVNLAIFDPSTGRDVVRDHVGEAAESLIHLFCVVPRQTLIHDDLLFKYSDRELVEHLRCSEVSLRNAKEKGVFDGDEEWRKKMNGLVPENGVAVKHIKTGEEIIVSRRVVAVFLLMTMADFSDQLFGFQDELFCNHDGRLEFRGNNVTALWPGNGKPGLWMNSNSRMGAIYSLIVREEEILMEQRRRVSGSGLVLRKERDEDIDLVLPPVFSFCTK-------IEAREMYWEVVSSDTSKEGYLERAEERLLGCIEKNPFVGEPHVLLSQVYLGKKRFKEAEGEAEKGLLLLLQWGSPWDKRMSWEGWIAWVRVLLMKSQDQSWPDVSWGILNLGLVR 419          
BLAST of g.barbadense_cottongen_reftransV1_0097844 vs. ExPASy TrEMBL
Match: A0A068V8K8_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_141 OS=Coffea canephora GN=GSCOC_T00004822001 PE=4 SV=1)

HSP 1 Score: 622.854 bits (1605), Expect = 0.000e+0
Identity = 302/414 (72.95%), Postives = 358/414 (86.47%), Query Frame = 2
Query:  224 LQALLDSSRPFLRGELQYVDKNLPNLVAVLRSVGAGECWHKHGSFLEHLVDIYRILKIWKAQDSVCLCGLFHSAYSNSYVNLAIFDPSTGRDVVRGHVGDAAERLIHLFCVVPRQPLIHDDLLFKYTDSEIVEHLAASEVSLKNAKEKGVFNEDEAWRNKIRGLVPENGHTVKHIKTGEDVLVSRRVLAIFLMMTMADFSDQLYGFQDVLFENFDGRLEFVGNNNVALWPGNGKPGLWLNSISRMGAIYSLILREEEIFVEQRKRVSG--XXXXXXXXXXXXLVVPPVFEHCSKVLGAKEQIEARDLYWEAVCDDSKGGQERAEELLLGSIEKNPFVGEPHVVLAQVYLTKGRFEEAEKEAEKGLILMLQWSSPWDKRMSWEGWIAWGRVLWMKAKEQSWPQTSWGVLNLGLVK 1459
            L  LL  +RPFLRGEL+ VDKNLP LV+VLRSVGAGECWHKHGSFLEHL DIYRILK+WKA D+VCLCGLFHSAYSNSYVNLAIFDPSTGRDVVR HV +A ERLIH+FC+VPR PLIHDDLLF Y D E+ EHL  SE+SL+NAKEKG+FNE+E+WR K+R ++P +G  VKHI+TGE+V VSRR++A+FL+MTMADFSDQL+GFQDVLFEN +GRLEF GNN   LWPGNGKPGLWLNSISRMGA+Y+LI REEEIF+EQR+R +G  I +  DRDE++ELV+PPVFE+C++VL A+EQ   R+LYWEAV +  K G ERAEELL+ +IEKNPFVGEPHVVL Q+YL+KGRFEE EKEA+KGL ++L+W SPWDKRMSWE W+AW R+L +K KE+SWP TSWG++ LGL+K
Sbjct:   13 LNDLLQLARPFLRGELENVDKNLPYLVSVLRSVGAGECWHKHGSFLEHLFDIYRILKLWKAPDAVCLCGLFHSAYSNSYVNLAIFDPSTGRDVVRSHVQEAVERLIHMFCIVPRHPLIHDDLLFHYDDQELDEHLKFSEISLRNAKEKGLFNEEESWRVKLRSVLPADGVVVKHIRTGEEVPVSRRLVAVFLLMTMADFSDQLFGFQDVLFENSNGRLEFSGNNFYGLWPGNGKPGLWLNSISRMGALYTLIAREEEIFLEQRRRNNGGVIVLADDRDEELELVIPPVFENCTRVLDAEEQKIGRELYWEAVFEGDKIGLERAEELLIRAIEKNPFVGEPHVVLGQIYLSKGRFEEGEKEAQKGLRMILEWGSPWDKRMSWEAWVAWARLLVIKGKEKSWPNTSWGIIELGLIK 426          
BLAST of g.barbadense_cottongen_reftransV1_0097844 vs. ExPASy TrEMBL
Match: M4F429_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra035829 PE=4 SV=1)

HSP 1 Score: 622.854 bits (1605), Expect = 0.000e+0
Identity = 305/413 (73.85%), Postives = 356/413 (86.20%), Query Frame = 2
Query:  233 LLDSSRPFLRGELQYVDKNLPNLVAVLRSVGAGECWHKHGSFLEHLVDIYRILKIWKAQDSVCLCGLFHSAYSNSYVNLAIFDPSTGRDVVRGHVGDAAERLIHLFCVVPRQPLIHDDLLFKYTDSEIVEHLAASEVSLKNAKEKGVFNEDEAWRNKIRGLVPENGHTVKHIKTGEDVLVSRRVLAIFLMMTMADFSDQLYGFQDVLFENFDGRLEFVGNNNVALWPGNGKPGLWLNSISRMGAIYSLILREEEIFVEQRKRVSGX--XXXXXXXXXXXLVVPPVFEHCSKVLGAKEQIEARDLYWEAVCDDS--KGGQERAEELLLGSIEKNPFVGEPHVVLAQVYLTKGRFEEAEKEAEKGLILMLQWSSPWDKRMSWEGWIAWGRVLWMKAKEQSWPQTSWGVLNLGLVK 1459
            +L  +RPFLRGEL+ ++  LP+L+AVL+SVGAGECWHKHG+FL+HLVD+Y+ILK+WKA + VCLCGLFHSAYSNSYVNLAIFDPSTGRDVVRGHVG+AAE L+HLFCV+PRQ LIHDD+LFKY+D E+VEHL  SEVSL+NAKEKGVF+ +E WR K+ GLVPENG  VKHIKTGE++LVSRRV+ +FL++TMADFSDQ +GFQD LF N DGRLEF GNN  ALWPGNGKPGLW+NS SR GAIYSLI+REEEI +EQRKR  G       +RDEDIELVVPPVF  C+KVL AKEQIEARD+YWEAV  D+  +G  ERAE++LLG IEKNPFVGEPHV+L+QVYL K RF EAE+EAE+GL+L+LQW SPWDKRMSWEGWIAW RVL MK+ +QSWP  SWG+LNLGLV+
Sbjct:    9 VLKLARPFLRGELEKINPKLPSLIAVLKSVGAGECWHKHGNFLDHLVDVYKILKLWKAPEPVCLCGLFHSAYSNSYVNLAIFDPSTGRDVVRGHVGEAAESLVHLFCVIPRQTLIHDDVLFKYSDLELVEHLELSEVSLRNAKEKGVFDGEEVWRKKLNGLVPENGVVVKHIKTGEEILVSRRVVGVFLLITMADFSDQFFGFQDELFCNNDGRLEFRGNNVTALWPGNGKPGLWMNSSSRTGAIYSLIVREEEILMEQRKRGYGSEFVARKERDEDIELVVPPVFSFCTKVLDAKEQIEARDMYWEAVSSDASKEGYLERAEKMLLGCIEKNPFVGEPHVLLSQVYLGKKRFVEAEREAERGLVLLLQWGSPWDKRMSWEGWIAWVRVLLMKSSDQSWPDVSWGILNLGLVR 421          
BLAST of g.barbadense_cottongen_reftransV1_0097844 vs. ExPASy TrEMBL
Match: A0A068VBD0_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_141 OS=Coffea canephora GN=GSCOC_T00004818001 PE=4 SV=1)

HSP 1 Score: 618.231 bits (1593), Expect = 0.000e+0
Identity = 309/414 (74.64%), Postives = 363/414 (87.68%), Query Frame = 2
Query:  224 LQALLDSSRPFLRGELQYVDKNLPNLVAVLRSVGAGECWHKHGSFLEHLVDIYRILKIWKAQDSVCLCGLFHSAYSNSYVNLAIFDPSTGRDVVRGHVGDAAERLIHLFCVVPRQPLIHDDLLFKYTDSEIVEHLAASEVSLKNAKEKGVFNEDEAWRNKIRGLVPENGHTVKHIKTGEDVLVSRRVLAIFLMMTMADFSDQLYGFQDVLFENFDGRLEFVGNNNVALWPGNGKPGLWLNSISRMGAIYSLILREEEIFVEQRKRVSG--XXXXXXXXXXXXLVVPPVFEHCSKVLGAKEQIEARDLYWEAVCDDSKGGQERAEELLLGSIEKNPFVGEPHVVLAQVYLTKGRFEEAEKEAEKGLILMLQWSSPWDKRMSWEGWIAWGRVLWMKAKEQSWPQTSWGVLNLGLVK 1459
            L  LL  +RPFLRGEL+ VDKNLP+LV+VLRSVGAGECWHKHGSFLEHLVDIYRILK+WKA D+VCLCGLFHSAYSNSYVNLAIFDPSTGRDVVR HVG+AAERLIH+FC+VPRQPLIHDDLLF Y D E+VEHL  SE+SL+NAKEK +FNEDE+WR K+  ++P +G  VKHIKTGE+V VSRR++A+FL+MTMADFSDQL+GFQDVLFEN +GRLEF GNN   LWPG+GKPGLWLNSISRMGA+Y+LI+REEEI +EQR+R +G  I +  DRDE++ELV+PPVFE+C++VL A+EQ   R+LYWEAVC+  K G  RA ELL+ +IEKNPFVGEPHVVL Q+YL+KG+FEE EKEAEKGL ++L+W SPWDKRM+WEGW+AW RVL MKAKE+SWP TSW +LNLGLVK
Sbjct:   13 LHDLLQLARPFLRGELENVDKNLPSLVSVLRSVGAGECWHKHGSFLEHLVDIYRILKLWKAPDAVCLCGLFHSAYSNSYVNLAIFDPSTGRDVVRSHVGEAAERLIHMFCIVPRQPLIHDDLLFHYNDQELVEHLKFSEISLRNAKEKDLFNEDESWRRKLNSVLPADGVVVKHIKTGEEVPVSRRLVAVFLLMTMADFSDQLFGFQDVLFENSNGRLEFSGNNFYGLWPGDGKPGLWLNSISRMGALYTLIVREEEIILEQRRRNNGGVIVLADDRDEELELVIPPVFENCTRVLDAEEQKIGRELYWEAVCEAEKVGLRRAVELLIRAIEKNPFVGEPHVVLGQIYLSKGKFEEGEKEAEKGLRMILEWGSPWDKRMTWEGWVAWARVLVMKAKEKSWPNTSWAILNLGLVK 426          
BLAST of g.barbadense_cottongen_reftransV1_0097844 vs. ExPASy TrEMBL
Match: F6HVZ0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_10s0071g00810 PE=4 SV=1)

HSP 1 Score: 617.846 bits (1592), Expect = 0.000e+0
Identity = 319/412 (77.43%), Postives = 367/412 (89.08%), Query Frame = 2
Query:  224 LQALLDSSRPFLRGELQYVDKNLPNLVAVLRSVGAGECWHKHGSFLEHLVDIYRILKIWKAQDSVCLCGLFHSAYSNSYVNLAIFDPSTGRDVVRGHVGDAAERLIHLFCVVPRQPLIHDDLLFKYTDSEIVEHLAASEVSLKNAKEKGVFNEDEAWRNKIRGLVPENGHTVKHIKTGEDVLVSRRVLAIFLMMTMADFSDQLYGFQDVLFENFDGRLEFVGNNNVALWPGNGKPGLWLNSISRMGAIYSLILREEEIFVEQRKRVSGXXXXXXXXXXXXLVVPPVFEHCSKVLGAKEQIEARDLYWEAVCDDSKGGQERAEELLLGSIEKNPFVGEPHVVLAQVYLTKGRFEEAEKEAEKGLILMLQWSSPWDKRMSWEGWIAWGRVLWMKAKEQSWPQTSWGVLNLGLVK 1459
            LQ LL S+RPFLRGEL+ V   LP+L++VLRSVGAGECWHKHGSFLEHL D+Y+ILK+WKAQ+SVCLCGLFHSAYSNSYVNLAIFDPSTGRD VR HVGDAAE LI+LFCVVPRQPLIHDDLLF+Y+D E+VEHL ASEVS++NAKE GVFN DEAWR K+  LVP  G TVKHIKTGEDVLVSRRV+AIF+MMTMADFSDQLYGFQD LF+N +G+LEF GN+  ALWPG+GKPGLWLNSISRMGA+YSL++REEEIF+E+RKRV G ++   RDE++ELV+PPV E+C++VLGA+EQIEA DLYWEAVC+ SK G + AE+LL   +EKNPFVGEPHVVLAQ+YLT GRFEEAE+EAEKGL LML+W +PWDKRM+WEGWIAW RVL MKAKE+SWP TSWG+LNLGLVK
Sbjct:   15 LQTLLASARPFLRGELEAVHPKLPSLISVLRSVGAGECWHKHGSFLEHLFDMYKILKLWKAQESVCLCGLFHSAYSNSYVNLAIFDPSTGRDTVRAHVGDAAEELIYLFCVVPRQPLIHDDLLFRYSDDELVEHLKASEVSVRNAKEGGVFNGDEAWRKKVNSLVPPGGVTVKHIKTGEDVLVSRRVVAIFVMMTMADFSDQLYGFQDALFDNSNGQLEFSGNSFGALWPGDGKPGLWLNSISRMGAVYSLLVREEEIFIEERKRVGGDQVVKGRDEELELVIPPVLENCTRVLGAEEQIEATDLYWEAVCEGSKRGLDWAEKLLGRCVEKNPFVGEPHVVLAQIYLTNGRFEEAEREAEKGLKLMLEWGNPWDKRMTWEGWIAWNRVLLMKAKERSWPNTSWGILNLGLVK 426          
BLAST of g.barbadense_cottongen_reftransV1_0097844 vs. ExPASy TrEMBL
Match: F6HVY9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_10s0071g00840 PE=4 SV=1)

HSP 1 Score: 617.461 bits (1591), Expect = 0.000e+0
Identity = 319/412 (77.43%), Postives = 367/412 (89.08%), Query Frame = 2
Query:  224 LQALLDSSRPFLRGELQYVDKNLPNLVAVLRSVGAGECWHKHGSFLEHLVDIYRILKIWKAQDSVCLCGLFHSAYSNSYVNLAIFDPSTGRDVVRGHVGDAAERLIHLFCVVPRQPLIHDDLLFKYTDSEIVEHLAASEVSLKNAKEKGVFNEDEAWRNKIRGLVPENGHTVKHIKTGEDVLVSRRVLAIFLMMTMADFSDQLYGFQDVLFENFDGRLEFVGNNNVALWPGNGKPGLWLNSISRMGAIYSLILREEEIFVEQRKRVSGXXXXXXXXXXXXLVVPPVFEHCSKVLGAKEQIEARDLYWEAVCDDSKGGQERAEELLLGSIEKNPFVGEPHVVLAQVYLTKGRFEEAEKEAEKGLILMLQWSSPWDKRMSWEGWIAWGRVLWMKAKEQSWPQTSWGVLNLGLVK 1459
            LQ LL S+RPFLRGEL+ V   LP+L++VLRSVGAGECWHKHGSFLEHLVD+Y+ILK+WKAQ+SVCLCGLFHSAYSNSYVNLAIF+PSTGRD VR HVGDAAE LI+LFCVVPRQPLIHDDLLF+Y+D E+VEHL ASEVS++NAKE GVFN DEAWR K+  LVP  G TVKHIKTGEDVLVSRRV+AIF+MMTMADFSDQ YGFQD LF+N +GRLEF GN+  ALWPG+GKPGLWLNSISRMGA+YSL++REEEIF+E+RKRV G ++   RDE++ELV+PPV E+C++VLGA+EQIEA DLYWEAVC+ SK G + AE+LL   +EKNPFVGEPHVVLAQ+YLT GRFEEAE+EAEKGL LML+W +PWDKRM+WEGWIAW RVL MKAKE+SWP TSWG+LNLGLVK
Sbjct:   15 LQTLLASARPFLRGELEAVHPKLPSLISVLRSVGAGECWHKHGSFLEHLVDMYKILKLWKAQESVCLCGLFHSAYSNSYVNLAIFEPSTGRDTVRAHVGDAAEELIYLFCVVPRQPLIHDDLLFRYSDDELVEHLKASEVSVRNAKEGGVFNGDEAWRKKVNSLVPPGGVTVKHIKTGEDVLVSRRVVAIFVMMTMADFSDQHYGFQDALFDNSNGRLEFSGNSYGALWPGDGKPGLWLNSISRMGAVYSLLVREEEIFIEERKRVGGDQVVKGRDEELELVIPPVLENCTRVLGAEEQIEATDLYWEAVCEGSKRGLDWAEKLLGRCVEKNPFVGEPHVVLAQIYLTNGRFEEAEREAEKGLKLMLEWGNPWDKRMTWEGWIAWNRVLLMKAKERSWPNTSWGILNLGLVK 426          
The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0097844 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of g.barbadense_cottongen_reftransV1_0097844 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
W9SAN6_9ROSA0.000e+073.21Uncharacterized protein OS=Morus notabilis GN=L484... [more]
Q0WTF1_ARATH0.000e+075.49Putative uncharacterized protein At3g19990 (Fragme... [more]
V4LVM2_EUTSA0.000e+075.30Uncharacterized protein OS=Eutrema salsugineum GN=... [more]
A0A078GJK2_BRANA0.000e+074.09BnaA05g19170D protein OS=Brassica napus GN=BnaA05g... [more]
R0I2Q8_9BRAS0.000e+074.82Uncharacterized protein OS=Capsella rubella GN=CAR... [more]
A0A068V8K8_COFCA0.000e+072.95Coffea canephora DH200=94 genomic scaffold, scaffo... [more]
M4F429_BRARP0.000e+073.85Uncharacterized protein OS=Brassica rapa subsp. pe... [more]
A0A068VBD0_COFCA0.000e+074.64Coffea canephora DH200=94 genomic scaffold, scaffo... [more]
F6HVZ0_VITVI0.000e+077.43Putative uncharacterized protein OS=Vitis vinifera... [more]
F6HVY9_VITVI0.000e+077.43Putative uncharacterized protein OS=Vitis vinifera... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 326..391
e-value: 1.0E-4
score: 21.4
IPR011990Tetratricopeptide-like helical domainSUPERFAMILY48452TPR-likecoord: 322..385
NoneNo IPR availablePANTHERPTHR14699:SF3SUBFAMILY NOT NAMEDcoord: 15..425
NoneNo IPR availablePANTHERPTHR14699STI2 PROTEIN-RELATEDcoord: 15..425

Sequences
The following sequences are available for this feature:

contig sequence

>g.barbadense_cottongen_reftransV1_0097844 ID=g.barbadense_cottongen_reftransV1_0097844; Name=g.barbadense_cottongen_reftransV1_0097844; organism=Gossypium barbadense; type=contig; length=1881bp
CCCCGAACGGATGTCATTTTAAGATGCTGCGGTATCTGTGGCAACTACTA
ATCCAAACAAAAACATAGAAAAAGTAGGATTAAACTCTTTCACGTCACTT
CCCCCATATCACTACAATTTCATCTCTAGACTCGGTTTCCCAAAGATTAG
AAACTCTATCACCATGCCATCAACTTCATCGGCAACCCCACCGACACCAT
CTCATCCCACCACTCACCACGTCCTTCAAGCCCTGTTAGACTCCTCACGT
CCCTTCCTTCGTGGCGAGCTTCAATATGTCGACAAAAACTTGCCTAATTT
GGTCGCCGTCTTGCGTTCCGTTGGTGCCGGCGAGTGTTGGCACAAGCACG
GCAGCTTTTTAGAGCATCTGGTCGATATCTATCGGATTCTCAAAATATGG
AAGGCGCAAGACTCCGTTTGCCTTTGCGGTCTTTTCCACTCTGCTTACTC
CAACTCTTACGTCAACCTCGCCATATTCGACCCTTCAACCGGCCGCGACG
TCGTTCGAGGCCACGTCGGCGACGCCGCAGAGCGTTTAATCCATTTGTTC
TGCGTCGTCCCAAGGCAACCTTTGATCCACGATGACCTTTTGTTCAAGTA
TACGGATTCGGAAATCGTCGAACACCTTGCGGCCTCCGAGGTTTCGTTGA
AGAACGCCAAAGAAAAGGGCGTTTTTAATGAAGACGAGGCTTGGAGGAAT
AAGATACGCGGACTGGTGCCTGAAAATGGGCATACAGTGAAGCACATAAA
GACCGGCGAGGACGTGTTGGTGTCTCGAAGGGTGTTGGCTATTTTCCTCA
TGATGACCATGGCAGATTTCAGTGACCAGCTTTATGGATTCCAGGATGTT
CTGTTTGAAAACTTCGATGGTAGGCTCGAATTCGTGGGCAACAACAACGT
TGCTTTATGGCCTGGGAATGGCAAACCAGGGCTGTGGTTGAATTCAATAT
CGAGAATGGGGGCAATATATAGTTTAATACTGAGAGAGGAAGAGATTTTT
GTTGAACAAAGGAAAAGGGTAAGTGGCATTGAGATTGAAACTGACAGAGA
TGAAGACATTGAGCTTGTTGTGCCACCAGTTTTTGAGCACTGCAGTAAGG
TGTTAGGTGCAAAAGAGCAAATAGAGGCAAGGGACTTGTATTGGGAAGCT
GTTTGTGATGATTCAAAAGGAGGGCAAGAGAGAGCTGAGGAATTGTTATT
AGGCAGCATTGAGAAGAACCCTTTTGTGGGTGAACCACATGTGGTGTTGG
CTCAGGTTTATTTGACCAAAGGAAGGTTTGAGGAAGCTGAAAAAGAGGCT
GAGAAAGGGTTGATTTTGATGCTTCAATGGAGCAGTCCATGGGATAAAAG
GATGTCTTGGGAAGGATGGATTGCTTGGGGAAGGGTTCTGTGGATGAAAG
CTAAAGAACAATCTTGGCCACAAACTTCATGGGGTGTCCTCAATTTGGGC
CTTGTTAAGTGATATCAGTTCCATTAGCTTGTTTCATCTTTGTTCCATGC
ATTTTCTGGTATATGATCCCCTGCCAATAATAATACTAATTATAACTCTG
CATGTATTGGAAGTTGTAATTAGTTGATGCGGTTTGGTCACAAAGTTCTG
GGGGTATCTTCAATTTAGGCCTTGTTATAAGTAATGTCACTTCCATTAGC
TTATTTCCTCTTTGTTCTATGCATTTTCTGCTATATATGTTCCAAGTTAT
GGCCTGTCAAAATCATACTGATAATCAAACCCTGCATGTATTGGAAGTAT
CTTATAAACAAACTTAATTTGTCAATATGCTTGTTGGGAACTTTTGGAAT
TTGTGTTTTGATCCCTTAATTAAATCCTCTCACCTCGTTCATCCTCTGTA
TTAAAGTTTCTTATATAATATACCTTTGGTG
back to top
Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding