g.barbadense_cottongen_reftransV1_0097665, g.barbadense_cottongen_reftransV1_0097665 (contig) Gossypium barbadense

Overview
Nameg.barbadense_cottongen_reftransV1_0097665
Unique Nameg.barbadense_cottongen_reftransV1_0097665
Typecontig
OrganismGossypium barbadense (Sea Island cotton)
Sequence length2543
Homology
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BLAST of g.barbadense_cottongen_reftransV1_0097665 vs. ExPASy TrEMBL
Match: A0A0D2PRK2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G090000 PE=4 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 4.176e-76
Identity = 129/165 (78.18%), Postives = 140/165 (84.85%), Query Frame = -3 
Query: 1870 MAAKSIEEEKPFLSGMGGGSTNLPVNIACFELIKPSFDETNHHCSLDVLPILIEETSFPVREKCSLNTSHGQDVYSISVLPEEGKTSPKCTPQLTFLSLLEVPFPSENQMCLDAKLSCHNCINLKVDIEDAYSSCILDINIEKETPDLLKSNDETVGNSKSEGMV 2364
            MAAK+I EEKPFLSG+  GSTNLPV+I+CFELIKPSFDETN HCSLDVLPILIEE SFPVREK SLNTSH  D YS SVLPEEG  SP CT +LTFLSLLEVPF S+NQMCLDA+LSC NCI+LKVD EDAYS C LDINIEKETPD+ + +DETVGN KSE   
Sbjct:    1 MAAKTIVEEKPFLSGIVDGSTNLPVDISCFELIKPSFDETNQHCSLDVLPILIEEASFPVREKSSLNTSHVSDAYSFSVLPEEGNMSPNCT-RLTFLSLLEVPFSSKNQMCLDAQLSCQNCIDLKVDREDAYSPCFLDINIEKETPDIFEFSDETVGNLKSEAFA 164
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BLAST of g.barbadense_cottongen_reftransV1_0097665 vs. ExPASy TrEMBL
Match: V4S254_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026269mg PE=4 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 2.049e-62
Identity = 105/174 (60.34%), Postives = 136/174 (78.16%), Query Frame = -3 
Query: 1843 MAAKSIEEEKPFLSGMGGGSTNLPVNIACFELIKPSFDETNHHCSLDVLPILIEETSFPVREKCSLNTSHGQDVYSISVLPEEGKTSPKCTPQLTFLSLLEVPFPSENQMCLDAKLSCHNCINLKVDIEDAYSSCILDINIEKETPDLLKSNDETVGNSKSEGMVTVSSIYLSL 2364
            MAA S  EEK +  G+   +++LPV+ +CF+L+KPSFDE NHHCSLDVLPILIEE SFP +++C  ++SH QDVY ISVLP+EG TSP CT QLTFLS LEVPFPS+++  LD +L CH CI+L++   DAYSSCI+DINIEKE  + LKSNDET G+ KSEG+V+  ++++  
Sbjct:    1 MAANSCNEEKVYFPGIMDRNSSLPVSCSCFQLLKPSFDEVNHHCSLDVLPILIEEASFPEKQECPFHSSHVQDVYGISVLPDEGNTSPNCTSQLTFLSFLEVPFPSKSRTSLDTQLDCHKCIDLQMKSADAYSSCIVDINIEKENLETLKSNDETFGSIKSEGVVSPFALFVHF 174
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BLAST of g.barbadense_cottongen_reftransV1_0097665 vs. ExPASy TrEMBL
Match: V4UPL2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026269mg PE=4 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 3.244e-61
Identity = 104/164 (63.41%), Postives = 130/164 (79.27%), Query Frame = -3 
Query: 1873 MAAKSIEEEKPFLSGMGGGSTNLPVNIACFELIKPSFDETNHHCSLDVLPILIEETSFPVREKCSLNTSHGQDVYSISVLPEEGKTSPKCTPQLTFLSLLEVPFPSENQMCLDAKLSCHNCINLKVDIEDAYSSCILDINIEKETPDLLKSNDETVGNSKSEGM 2364
            MAA S  EEK +  G+   +++LPV+ +CF+L+KPSFDE NHHCSLDVLPILIEE SFP +++C  ++SH QDVY ISVLP+EG TSP CT QLTFLS LEVPFPS+++  LD +L CH CI+L++   DAYSSCI+DINIEKE  + LKSNDET G+ KSEG+
Sbjct:    1 MAANSCNEEKVYFPGIMDRNSSLPVSCSCFQLLKPSFDEVNHHCSLDVLPILIEEASFPEKQECPFHSSHVQDVYGISVLPDEGNTSPNCTSQLTFLSFLEVPFPSKSRTSLDTQLDCHKCIDLQMKSADAYSSCIVDINIEKENLETLKSNDETFGSIKSEGV 164

HSP 2 Score: 104.375 bits (259), Expect = 4.023e-21
Identity = 48/61 (78.69%), Postives = 54/61 (88.52%), Query Frame = -2 
Query:  233 IGAEKSSNERVHDAPSNRWRRYKRAASFDSRKIVLLFSILSSVGTLILIYLTLRVRQTIDG 415
            +  +KS  ER HDAP+NRWRRY+RAASFDSRK+VLLFSILSS+GTLILIYLTLRVRQ  DG
Sbjct:  176 LNIDKSPTERTHDAPTNRWRRYRRAASFDSRKVVLLFSILSSLGTLILIYLTLRVRQNGDG 236
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0097665 vs. ExPASy TrEMBL
Match: V4SR74_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026269mg PE=4 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 8.118e-55
Identity = 104/195 (53.33%), Postives = 130/195 (66.67%), Query Frame = -3 
Query: 1873 MAAKSIEEEKPFLSGMGGGSTNLPVNIACFELIKPSFDETNHHCSL-------------------------------DVLPILIEETSFPVREKCSLNTSHGQDVYSISVLPEEGKTSPKCTPQLTFLSLLEVPFPSENQMCLDAKLSCHNCINLKVDIEDAYSSCILDINIEKETPDLLKSNDETVGNSKSEGM 2364
            MAA S  EEK +  G+   +++LPV+ +CF+L+KPSFDE NHHCSL                               DVLPILIEE SFP +++C  ++SH QDVY ISVLP+EG TSP CT QLTFLS LEVPFPS+++  LD +L CH CI+L++   DAYSSCI+DINIEKE  + LKSNDET G+ KSEG+
Sbjct:    1 MAANSCNEEKVYFPGIMDRNSSLPVSCSCFQLLKPSFDEVNHHCSLGNDPFTLFGWLIKIQYIQLVSGLISLWRGISDVLPILIEEASFPEKQECPFHSSHVQDVYGISVLPDEGNTSPNCTSQLTFLSFLEVPFPSKSRTSLDTQLDCHKCIDLQMKSADAYSSCIVDINIEKENLETLKSNDETFGSIKSEGV 195

HSP 2 Score: 103.219 bits (256), Expect = 1.398e-20
Identity = 48/61 (78.69%), Postives = 54/61 (88.52%), Query Frame = -2 
Query:  233 IGAEKSSNERVHDAPSNRWRRYKRAASFDSRKIVLLFSILSSVGTLILIYLTLRVRQTIDG 415
            +  +KS  ER HDAP+NRWRRY+RAASFDSRK+VLLFSILSS+GTLILIYLTLRVRQ  DG
Sbjct:  207 LNIDKSPTERTHDAPTNRWRRYRRAASFDSRKVVLLFSILSSLGTLILIYLTLRVRQNGDG 267
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0097665 vs. ExPASy TrEMBL
Match: V4SL97_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026269mg PE=4 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 2.171e-50
Identity = 96/175 (54.86%), Postives = 119/175 (68.00%), Query Frame = -3 
Query: 1873 TNLPVNIACFELIKPSFDETNHHCSL-------------------------------DVLPILIEETSFPVREKCSLNTSHGQDVYSISVLPEEGKTSPKCTPQLTFLSLLEVPFPSENQMCLDAKLSCHNCINLKVDIEDAYSSCILDINIEKETPDLLKSNDETVGNSKSEGM 2304
            ++LPV+ +CF+L+KPSFDE NHHCSL                               DVLPILIEE SFP +++C  ++SH QDVY ISVLP+EG TSP CT QLTFLS LEVPFPS+++  LD +L CH CI+L++   DAYSSCI+DINIEKE  + LKSNDET G+ KSEG+
Sbjct:    5 SSLPVSCSCFQLLKPSFDEVNHHCSLGNDPFTLFGWLIKIQYIQLVSGLISLWRGISDVLPILIEEASFPEKQECPFHSSHVQDVYGISVLPDEGNTSPNCTSQLTFLSFLEVPFPSKSRTSLDTQLDCHKCIDLQMKSADAYSSCIVDINIEKENLETLKSNDETFGSIKSEGV 179

HSP 2 Score: 103.219 bits (256), Expect = 1.278e-20
Identity = 48/61 (78.69%), Postives = 54/61 (88.52%), Query Frame = -2 
Query:  233 IGAEKSSNERVHDAPSNRWRRYKRAASFDSRKIVLLFSILSSVGTLILIYLTLRVRQTIDG 415
            +  +KS  ER HDAP+NRWRRY+RAASFDSRK+VLLFSILSS+GTLILIYLTLRVRQ  DG
Sbjct:  191 LNIDKSPTERTHDAPTNRWRRYRRAASFDSRKVVLLFSILSSLGTLILIYLTLRVRQNGDG 251
The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0097665 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of g.barbadense_cottongen_reftransV1_0097665 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D2PRK2_GOSRA4.176e-7678.18Uncharacterized protein OS=Gossypium raimondii GN=... [more]
V4S254_9ROSI2.049e-6260.34Uncharacterized protein OS=Citrus clementina GN=CI... [more]
V4UPL2_9ROSI3.244e-6163.41Uncharacterized protein OS=Citrus clementina GN=CI... [more]
V4SR74_9ROSI8.118e-5553.33Uncharacterized protein OS=Citrus clementina GN=CI... [more]
V4SL97_9ROSI2.171e-5054.86Uncharacterized protein OS=Citrus clementina GN=CI... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34064:SF5SUBFAMILY NOT NAMEDcoord: 36..166
NoneNo IPR availablePANTHERPTHR34064FAMILY NOT NAMEDcoord: 36..166

Sequences
The following sequences are available for this feature:

contig sequence

>g.barbadense_cottongen_reftransV1_0097665 ID=g.barbadense_cottongen_reftransV1_0097665; Name=g.barbadense_cottongen_reftransV1_0097665; organism=Gossypium barbadense; type=contig; length=2543bp
TTGAATCAAATTTGGTGAATACTCATTTATTGAGAGCCGTACTAGGTTAT
CGTGTAATACAACAGGTAAAACTAGAAATTTCCAACAATATTCGAAACTG
TTGGCACATGCTGAATCTCTCTACTCGTATTTACAATCGAAACTCAGAAA
AAAAAGGAACATACAAAGCCAGCCAGCTGTTCTGAAGACGGAAAAAGAAA
ACAAATTGAAGGAGGTGCTACACATGATTGAACCCATCAATTGTTTGTCT
AACTCTCAGCGTGAGATAAATCAAGATCAATGTCCCCACACTTGACAAGA
TTGAGAAAAGGAGGACAATTTTCCTCGAATCAAATGATGCAGCTCTTTTG
TATCTTCTCCATCTGTTGCTTGGTGCATCATGAACCCTCTCGTTCGATGA
TTTCTCTGCTCCAATCAAATTCAGTTTTTAGTTGTAAACAAATTCCGCAT
GGCATGAGGAAGCAAACATGTAATATGCACAAATGGAAGTAGACAGTAAA
TGGCACAGAGAAAAGGTAGCAGACAATTCCAAAAACCACATAGCTTTTAC
TGATTGAGATAATCGAGTTCGATCTTACAATTCCTCAAAGCCCTTTGAAG
TAAAAGTTCCACACAGAGTTGTGAAGTACAAAACTCTGTATTTGGTCCAT
TTGTTCTAAATTGTTAGTGCACTGAAATTAAATGTGTCAATGAAGTTCTT
TTGTCAGCTTTAATCTTCTTGAAGGTGAAAGTTTGGGTCTACGGCCACGG
CTACAAGAATATAAACCTGTTTTCCAACTCTAATAACTTCCACGTGAACA
TATTACCAAGGGAACCTCTTTTTTTCTTATAGTTGTCATAAACATTCTAT
TGAAAAAAATGTTAGTCTTGATGTCAAAACACCACATCAAACAATATGCA
TGAAACATTAGACAGAATTTTCTTCATGACAGCTAGGTTACTAGCAGAAT
GTTCTACTCCTTTGGATGTTTTTTGTTCAGAAGAAACTATCAACCGTGTC
TTAAGCAAAAGAATGCAATCATGGCTAAATCATGGAAATGGAAAATGAAT
CCATAGATAATTTATGGGGGATACTCAAACAAGTGTTCAAAACATTATAT
ATAGTACTAGCGTTGGAGATTGAATGGGGTCCAGTGCTATTTATTTCACA
CTCATCAACCATCATGTTTGACAATGGTTCATGTGTTCATTGCAAGTGCA
TGGTTTTTGTTTTACTCTCCATATGGCGCTAACTCTCTTAATCTTACATT
TACTCTTTTCTACTCACCTCCTGTCAATGTATCAAACTTTTGCATCAATG
ACCTTTTTGTAGGTAATGGCACCATCCAGATTGTGTGACAAAGAAATTTT
CTTTCTTCTTTTCCAGCTCTACACTGGTTGCTGAGATTGTTATCAGCTGC
TTTCTGAAATGAACGGCCTTTGGACATTTATTTCAAAACCATGATTTGTC
AATAAATTCACCATTGTCAAACAAGATGGTCAATCAGTGTGAAGAGAATG
CGACTAGACCCCACTCAATCTCCAACAAATAGAGTATGCTTACTACCTCT
CAGAGTATGATTTAGTGCAATTAACTCATTGTCAGATCAAAGCTGAGTGA
ACTCTCACCTACGTTTAAGCTTGCTTGTCTTTGTAACACCTTCTGCAAAT
GCTGTAATTCATTGAGATTTAATGTTAGCATCGAGGGTAAAGGAAGATAA
AGACCAAGCGTCCAAGACTCAAGGAAAATCAGCAATCCTTTGATGATTAG
ATGATTAAAGTAGGTATATAGTAACTGTGTATGATCTGCAATTCACTGCA
TATGCCCTTTAAAATGAAGAGAAACTTTCTACAAGATCAATGTAAAGATA
AGTAAATCGAACTTACTGTAACCATGCCTTCACTTTTTGAATTACCAACA
GTTTCATCATTAGATTTCAGTAGGTCGGGAGTCTCTTTCTCAATGTTTAT
ATCCAGAATGCACGATGAATAAGCATCTTCAATATCCACTTTCAAATTGA
TGCAGTTGTGGCAACTCAATTTCGCATCCAAACACATCTGGTTTTCAGAT
GGAAAAGGAACTTCCAAGAGGCTCAAAAAAGTTAACTGTGGTGTACATTT
TGGACTCGTTTTTCCTTCCTCCGGCAACACAGAAATGCTATAGACATCCT
GGCCATGTGAAGTGTTTAAGCTGCATTTTTCTCTTACTGGAAATGAAGTC
TCCTCTATTAGAATAGGCAAGACATCGAGAGAACAATGATGGTTGGTCTC
ATCAAAGCTTGGCTTAATCAACTCAAAACATGCAATGTTGACTGGTAAAT
TGGTGCTTCCACCCCCCATCCCCGATAAGAATGGTTTCTCCTCCTCGATC
GATTTAGCGGCCATTGCAGGAAAAAGAAAAAGAGCAGCAGAGAATTATTT
CAGACAGAAAATCTCTGAAAGTTTCAAAAGTGCATTTTCTATTAACATTA
AGAATTCTCCATAGCTGAGAAGGCAAGCCTATTTCCCAGAAAAAGGCTCG
TGATTACTACAAATCTGCACCATATTACAATATTATATTAACA
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