g.barbadense_cottongen_reftransV1_0097665, g.barbadense_cottongen_reftransV1_0097665 (contig) Gossypium barbadense
Overview
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0097665 vs. ExPASy TrEMBL
Match: A0A0D2TKD4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G238400 PE=4 SV=1) HSP 1 Score: 292.352 bits (747), Expect = 5.273e-89 Identity = 143/166 (86.14%), Postives = 152/166 (91.57%), Query Frame = -3 Query: 1867 MAAKSIEEEKPFLSGMGGGSTNLPVNIACFELIKPSFDETNHHCSLDVLPILIEETSFPVREKCSLNTSHGQDVYSISVLPEEGKTSPKCTPQLTFLSLLEVPFPSENQMCLDAKLSCHNCINLKVDIEDAYSSCILDINIEKETPDLLKSNDETVGNSKSEGMVT 2364 M +SI+EEKPFLSGM GSTNLPVN++CFELIKPS DETN HCSLDVLPILIEETSF REKCSLNTSHGQDVYSISVLPEEG SPKCTPQLTFLSLLEVPF S+NQMCLDA+LSC NC++LKVD EDAYSSCILDINIEKETPDLLKSNDE VGNSKSEG+VT Sbjct: 1 MLVESIQEEKPFLSGMVDGSTNLPVNLSCFELIKPSLDETNQHCSLDVLPILIEETSFSAREKCSLNTSHGQDVYSISVLPEEGNMSPKCTPQLTFLSLLEVPFSSKNQMCLDAQLSCQNCVDLKVDSEDAYSSCILDINIEKETPDLLKSNDEIVGNSKSEGVVT 166 HSP 2 Score: 93.2041 bits (230), Expect = 1.223e-17 Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = -3 Query: 280 RNHRTRGFMMHQATDGEDTKELHHLIRGKLSSFSQSCQVWGH 405 RNHRTRGFMMHQATDGEDT ELHHLIRGKLSSFSQSCQVWGH Sbjct: 167 RNHRTRGFMMHQATDGEDTNELHHLIRGKLSSFSQSCQVWGH 208
BLAST of g.barbadense_cottongen_reftransV1_0097665 vs. ExPASy TrEMBL
Match: A0A0D2PE62_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G238400 PE=4 SV=1) HSP 1 Score: 292.352 bits (747), Expect = 5.968e-89 Identity = 143/166 (86.14%), Postives = 152/166 (91.57%), Query Frame = -3 Query: 1867 MAAKSIEEEKPFLSGMGGGSTNLPVNIACFELIKPSFDETNHHCSLDVLPILIEETSFPVREKCSLNTSHGQDVYSISVLPEEGKTSPKCTPQLTFLSLLEVPFPSENQMCLDAKLSCHNCINLKVDIEDAYSSCILDINIEKETPDLLKSNDETVGNSKSEGMVT 2364 M +SI+EEKPFLSGM GSTNLPVN++CFELIKPS DETN HCSLDVLPILIEETSF REKCSLNTSHGQDVYSISVLPEEG SPKCTPQLTFLSLLEVPF S+NQMCLDA+LSC NC++LKVD EDAYSSCILDINIEKETPDLLKSNDE VGNSKSEG+VT Sbjct: 1 MLVESIQEEKPFLSGMVDGSTNLPVNLSCFELIKPSLDETNQHCSLDVLPILIEETSFSAREKCSLNTSHGQDVYSISVLPEEGNMSPKCTPQLTFLSLLEVPFSSKNQMCLDAQLSCQNCVDLKVDSEDAYSSCILDINIEKETPDLLKSNDEIVGNSKSEGVVT 166 HSP 2 Score: 77.411 bits (189), Expect = 2.099e-12 Identity = 33/39 (84.62%), Postives = 37/39 (94.87%), Query Frame = -1 Query: 1311 MSKGRSFQKAADNNLSNQCRAGKEERKFLCHTIWMVPLP 1427 ++ G SF+KAAD+NLSNQCRAGKEERKFLCHTIWMVPLP Sbjct: 178 LNVGHSFKKAADSNLSNQCRAGKEERKFLCHTIWMVPLP 216
BLAST of g.barbadense_cottongen_reftransV1_0097665 vs. ExPASy TrEMBL
Match: A0A061DHX0_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_001111 PE=4 SV=1) HSP 1 Score: 291.582 bits (745), Expect = 2.611e-88 Identity = 142/166 (85.54%), Postives = 154/166 (92.77%), Query Frame = -3 Query: 1867 MAAKSIEEEKPFLSGMGGGSTNLPVNIACFELIKPSFDETNHHCSLDVLPILIEETSFPVREKCSLNTSHGQDVYSISVLPEEGKTSPKCTPQLTFLSLLEVPFPSENQMCLDAKLSCHNCINLKVDIEDAYSSCILDINIEKETPDLLKSNDETVGNSKSEGMVT 2364 MAAKSIE+EKPFL GM GSTNLPVNI+CFELIKPSFDET+ HCSLDVLPILIEETSFPVREKCSL TS+GQDVYSISVLPEEG TSPKCTPQLTFLSLLEVPF S+NQMCLDA+LSC NCI+LKVD ED YSSCILDINIEKE D+LKS++ETVGN+KSEG+VT Sbjct: 1 MAAKSIEQEKPFLPGMVDGSTNLPVNISCFELIKPSFDETHQHCSLDVLPILIEETSFPVREKCSLKTSNGQDVYSISVLPEEGNTSPKCTPQLTFLSLLEVPFSSKNQMCLDAQLSCQNCIDLKVDTEDDYSSCILDINIEKENSDILKSSNETVGNTKSEGVVT 166 HSP 2 Score: 110.923 bits (276), Expect = 2.466e-23 Identity = 53/58 (91.38%), Postives = 55/58 (94.83%), Query Frame = -2 Query: 233 EKSSNERVHDAPSNRWRRYKRAASFDSRKIVLLFSILSSVGTLILIYLTLRVRQTIDG 406 +KSS ERVHDAP+NRWRRYKRAASFDSRKIVLLFSILSSVGTLILIYLTLRVRQ DG Sbjct: 180 DKSSTERVHDAPTNRWRRYKRAASFDSRKIVLLFSILSSVGTLILIYLTLRVRQNGDG 237
BLAST of g.barbadense_cottongen_reftransV1_0097665 vs. ExPASy TrEMBL
Match: A0A0B0PAZ4_GOSAR (Potassium channel subfamily K member 10 OS=Gossypium arboreum GN=F383_27244 PE=4 SV=1) HSP 1 Score: 292.352 bits (747), Expect = 7.865e-88 Identity = 142/166 (85.54%), Postives = 151/166 (90.96%), Query Frame = -3 Query: 1867 MAAKSIEEEKPFLSGMGGGSTNLPVNIACFELIKPSFDETNHHCSLDVLPILIEETSFPVREKCSLNTSHGQDVYSISVLPEEGKTSPKCTPQLTFLSLLEVPFPSENQMCLDAKLSCHNCINLKVDIEDAYSSCILDINIEKETPDLLKSNDETVGNSKSEGMVT 2364 M +SI+EEKPFLSGM GSTNLPVN++CFELIKPS DETN HCSLDVLPILIEETSF REKCSLNTS GQDVYSISVLPEEG +PKCTPQLTFLSLLEVPF S+NQMCLD +LSC NCI+LKVD EDAYSSCILDINIEKETPDLLKSNDETVGNSKSEG+VT Sbjct: 1 MLVESIQEEKPFLSGMVDGSTNLPVNLSCFELIKPSLDETNQHCSLDVLPILIEETSFSAREKCSLNTSQGQDVYSISVLPEEGNMNPKCTPQLTFLSLLEVPFSSKNQMCLDEQLSCQNCIDLKVDSEDAYSSCILDINIEKETPDLLKSNDETVGNSKSEGVVT 166 HSP 2 Score: 123.25 bits (308), Expect = 3.097e-27 Identity = 59/65 (90.77%), Postives = 61/65 (93.85%), Query Frame = -2 Query: 233 KLNLIGAEKSSNERVHDAPSNRWRRYKRAASFDSRKIVLLFSILSSVGTLILIYLTLRVRQTIDG 427 K + + EKSSNERVHDAPSNRWRRYKRAASFDSRKIVLLFSILSSVGTLILIYLTLRVRQTIDG Sbjct: 224 KFDTLTGEKSSNERVHDAPSNRWRRYKRAASFDSRKIVLLFSILSSVGTLILIYLTLRVRQTIDG 288 HSP 3 Score: 110.923 bits (276), Expect = 4.408e-23 Identity = 50/53 (94.34%), Postives = 52/53 (98.11%), Query Frame = -1 Query: 1269 MSKGRSFQKAADNNLSNQCRAGKEERKFLCHTIWMVPLPTKRSLMQKFDTLTG 1427 ++ GRSFQKAADNNLSNQCRAGKEERKFLCHTIWMVPLPTKRSLMQKFDTLTG Sbjct: 178 LNIGRSFQKAADNNLSNQCRAGKEERKFLCHTIWMVPLPTKRSLMQKFDTLTG 230
BLAST of g.barbadense_cottongen_reftransV1_0097665 vs. ExPASy TrEMBL
Match: A0A0D2TKD1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G238400 PE=4 SV=1) HSP 1 Score: 272.322 bits (695), Expect = 2.858e-81 Identity = 132/151 (87.42%), Postives = 139/151 (92.05%), Query Frame = -3 Query: 1867 MGGGSTNLPVNIACFELIKPSFDETNHHCSLDVLPILIEETSFPVREKCSLNTSHGQDVYSISVLPEEGKTSPKCTPQLTFLSLLEVPFPSENQMCLDAKLSCHNCINLKVDIEDAYSSCILDINIEKETPDLLKSNDETVGNSKSEGMVT 2319 M GSTNLPVN++CFELIKPS DETN HCSLDVLPILIEETSF REKCSLNTSHGQDVYSISVLPEEG SPKCTPQLTFLSLLEVPF S+NQMCLDA+LSC NC++LKVD EDAYSSCILDINIEKETPDLLKSNDE VGNSKSEG+VT Sbjct: 1 MVDGSTNLPVNLSCFELIKPSLDETNQHCSLDVLPILIEETSFSAREKCSLNTSHGQDVYSISVLPEEGNMSPKCTPQLTFLSLLEVPFSSKNQMCLDAQLSCQNCVDLKVDSEDAYSSCILDINIEKETPDLLKSNDEIVGNSKSEGVVT 151 HSP 2 Score: 122.094 bits (305), Expect = 2.675e-27 Identity = 58/61 (95.08%), Postives = 59/61 (96.72%), Query Frame = -2 Query: 233 IGAEKSSNERVHDAPSNRWRRYKRAASFDSRKIVLLFSILSSVGTLILIYLTLRVRQTIDG 415 + EKSSNERVHDAPSNRWRRYKRAASFDSRKIVLLFSILSSVGTLILIYLTLRVRQTIDG Sbjct: 163 LNVEKSSNERVHDAPSNRWRRYKRAASFDSRKIVLLFSILSSVGTLILIYLTLRVRQTIDG 223
BLAST of g.barbadense_cottongen_reftransV1_0097665 vs. ExPASy TrEMBL
Match: A0A0D2T2V7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G090000 PE=4 SV=1) HSP 1 Score: 266.159 bits (679), Expect = 1.224e-79 Identity = 136/176 (77.27%), Postives = 150/176 (85.23%), Query Frame = -3 Query: 1846 MAAKSIEEEKPFLSGMGGGSTNLPVNIACFELIKPSFDETNHHCSLDVLPILIEETSFPVREKCSLNTSHGQDVYSISVLPEEGKTSPKCTPQLTFLSLLEVPFPSENQMCLDAKLSCHNCINLKVDIEDAYSSCILDINIEKETPDLLKSNDETVGNSKSEGMVTV---SSIYLS 2364 MAAK+I EEKPFLSG+ GSTNLPV+I+CFELIKPSFDETN HCSLDVLPILIEE SFPVREK SLNTSH D YS SVLPEEG SP CT +LTFLSLLEVPF S+NQMCLDA+LSC NCI+LKVD EDAYS C LDINIEKETPD+ + +DETVGN KSEG+VTV S +Y+S Sbjct: 1 MAAKTIVEEKPFLSGIVDGSTNLPVDISCFELIKPSFDETNQHCSLDVLPILIEEASFPVREKSSLNTSHVSDAYSFSVLPEEGNMSPNCT-RLTFLSLLEVPFSSKNQMCLDAQLSCQNCIDLKVDREDAYSPCFLDINIEKETPDIFEFSDETVGNLKSEGVVTVCLISYLYIS 175
BLAST of g.barbadense_cottongen_reftransV1_0097665 vs. ExPASy TrEMBL
Match: A0A0D2SXI5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G090000 PE=4 SV=1) HSP 1 Score: 266.929 bits (681), Expect = 3.631e-79 Identity = 132/166 (79.52%), Postives = 144/166 (86.75%), Query Frame = -3 Query: 1867 MAAKSIEEEKPFLSGMGGGSTNLPVNIACFELIKPSFDETNHHCSLDVLPILIEETSFPVREKCSLNTSHGQDVYSISVLPEEGKTSPKCTPQLTFLSLLEVPFPSENQMCLDAKLSCHNCINLKVDIEDAYSSCILDINIEKETPDLLKSNDETVGNSKSEGMVT 2364 MAAK+I EEKPFLSG+ GSTNLPV+I+CFELIKPSFDETN HCSLDVLPILIEE SFPVREK SLNTSH D YS SVLPEEG SP CT +LTFLSLLEVPF S+NQMCLDA+LSC NCI+LKVD EDAYS C LDINIEKETPD+ + +DETVGN KSEG+VT Sbjct: 1 MAAKTIVEEKPFLSGIVDGSTNLPVDISCFELIKPSFDETNQHCSLDVLPILIEEASFPVREKSSLNTSHVSDAYSFSVLPEEGNMSPNCT-RLTFLSLLEVPFSSKNQMCLDAQLSCQNCIDLKVDREDAYSPCFLDINIEKETPDIFEFSDETVGNLKSEGVVT 165 HSP 2 Score: 90.8929 bits (224), Expect = 1.080e-16 Identity = 44/47 (93.62%), Postives = 45/47 (95.74%), Query Frame = -2 Query: 257 SNERVHDAPSNRWRRYKRAASFDSRKIVLLFSILSSVGTLILIYLTL 397 S ERVHDA +NRWRRYKRAASFDSRKIVLLFSILSSVGTLILIYLTL Sbjct: 182 STERVHDAATNRWRRYKRAASFDSRKIVLLFSILSSVGTLILIYLTL 228
BLAST of g.barbadense_cottongen_reftransV1_0097665 vs. ExPASy TrEMBL
Match: A0A0D2TZU1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G090000 PE=4 SV=1) HSP 1 Score: 264.233 bits (674), Expect = 7.585e-79 Identity = 132/166 (79.52%), Postives = 144/166 (86.75%), Query Frame = -3 Query: 1867 MAAKSIEEEKPFLSGMGGGSTNLPVNIACFELIKPSFDETNHHCSLDVLPILIEETSFPVREKCSLNTSHGQDVYSISVLPEEGKTSPKCTPQLTFLSLLEVPFPSENQMCLDAKLSCHNCINLKVDIEDAYSSCILDINIEKETPDLLKSNDETVGNSKSEGMVT 2364 MAAK+I EEKPFLSG+ GSTNLPV+I+CFELIKPSFDETN HCSLDVLPILIEE SFPVREK SLNTSH D YS SVLPEEG SP CT +LTFLSLLEVPF S+NQMCLDA+LSC NCI+LKVD EDAYS C LDINIEKETPD+ + +DETVGN KSEG+VT Sbjct: 1 MAAKTIVEEKPFLSGIVDGSTNLPVDISCFELIKPSFDETNQHCSLDVLPILIEEASFPVREKSSLNTSHVSDAYSFSVLPEEGNMSPNCT-RLTFLSLLEVPFSSKNQMCLDAQLSCQNCIDLKVDREDAYSPCFLDINIEKETPDIFEFSDETVGNLKSEGVVT 165
BLAST of g.barbadense_cottongen_reftransV1_0097665 vs. ExPASy TrEMBL
Match: A0A0D2SXH7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G090000 PE=4 SV=1) HSP 1 Score: 263.462 bits (672), Expect = 1.171e-78 Identity = 132/166 (79.52%), Postives = 144/166 (86.75%), Query Frame = -3 Query: 1867 MAAKSIEEEKPFLSGMGGGSTNLPVNIACFELIKPSFDETNHHCSLDVLPILIEETSFPVREKCSLNTSHGQDVYSISVLPEEGKTSPKCTPQLTFLSLLEVPFPSENQMCLDAKLSCHNCINLKVDIEDAYSSCILDINIEKETPDLLKSNDETVGNSKSEGMVT 2364 MAAK+I EEKPFLSG+ GSTNLPV+I+CFELIKPSFDETN HCSLDVLPILIEE SFPVREK SLNTSH D YS SVLPEEG SP CT +LTFLSLLEVPF S+NQMCLDA+LSC NCI+LKVD EDAYS C LDINIEKETPD+ + +DETVGN KSEG+VT Sbjct: 1 MAAKTIVEEKPFLSGIVDGSTNLPVDISCFELIKPSFDETNQHCSLDVLPILIEEASFPVREKSSLNTSHVSDAYSFSVLPEEGNMSPNCT-RLTFLSLLEVPFSSKNQMCLDAQLSCQNCIDLKVDREDAYSPCFLDINIEKETPDIFEFSDETVGNLKSEGVVT 165
BLAST of g.barbadense_cottongen_reftransV1_0097665 vs. ExPASy TrEMBL
Match: A0A061DI12_THECC (Uncharacterized protein isoform 2 OS=Theobroma cacao GN=TCM_001111 PE=4 SV=1) HSP 1 Score: 265.003 bits (676), Expect = 1.703e-78 Identity = 129/151 (85.43%), Postives = 140/151 (92.72%), Query Frame = -3 Query: 1867 MGGGSTNLPVNIACFELIKPSFDETNHHCSLDVLPILIEETSFPVREKCSLNTSHGQDVYSISVLPEEGKTSPKCTPQLTFLSLLEVPFPSENQMCLDAKLSCHNCINLKVDIEDAYSSCILDINIEKETPDLLKSNDETVGNSKSEGMVT 2319 M GSTNLPVNI+CFELIKPSFDET+ HCSLDVLPILIEETSFPVREKCSL TS+GQDVYSISVLPEEG TSPKCTPQLTFLSLLEVPF S+NQMCLDA+LSC NCI+LKVD ED YSSCILDINIEKE D+LKS++ETVGN+KSEG+VT Sbjct: 1 MVDGSTNLPVNISCFELIKPSFDETHQHCSLDVLPILIEETSFPVREKCSLKTSNGQDVYSISVLPEEGNTSPKCTPQLTFLSLLEVPFSSKNQMCLDAQLSCQNCIDLKVDTEDDYSSCILDINIEKENSDILKSSNETVGNTKSEGVVT 151 HSP 2 Score: 110.538 bits (275), Expect = 2.358e-23 Identity = 53/59 (89.83%), Postives = 55/59 (93.22%), Query Frame = -2 Query: 233 AEKSSNERVHDAPSNRWRRYKRAASFDSRKIVLLFSILSSVGTLILIYLTLRVRQTIDG 409 +KSS ERVHDAP+NRWRRYKRAASFDSRKIVLLFSILSSVGTLILIYLTLRVRQ DG Sbjct: 164 VDKSSTERVHDAPTNRWRRYKRAASFDSRKIVLLFSILSSVGTLILIYLTLRVRQNGDG 222 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0097665 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 0
BLAST of g.barbadense_cottongen_reftransV1_0097665 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0097665 ID=g.barbadense_cottongen_reftransV1_0097665; Name=g.barbadense_cottongen_reftransV1_0097665; organism=Gossypium barbadense; type=contig; length=2543bpback to top |