g.barbadense_cottongen_reftransV1_0097658, g.barbadense_cottongen_reftransV1_0097658 (contig) Gossypium barbadense

Overview
Nameg.barbadense_cottongen_reftransV1_0097658
Unique Nameg.barbadense_cottongen_reftransV1_0097658
Typecontig
OrganismGossypium barbadense (Sea Island cotton)
Sequence length1953
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
At02chromosomeg.barbadense_cottongen_reftransV1_0097658:1..1953 .
At02:14956428..14961352 +
Homology
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0097658 vs. ExPASy TrEMBL
Match: A0A078F8W0_BRANA (BnaA06g15330D protein OS=Brassica napus GN=BnaA06g15330D PE=4 SV=1)

HSP 1 Score: 299.671 bits (766), Expect = 7.274e-92
Identity = 152/185 (82.16%), Postives = 167/185 (90.27%), Query Frame = -3 
Query: 1094 NKKDFDVEYDPLXXXXXXXXXXXTIDVDIQITESKSFVSTQGWDSDMVVDYRINEEEFHKISLMDCDFFIRKPPDPDNDVYDFREMYVSPPDTDVYSIPKVLALMPQKYIRCAMSDYGCYNVTEPPIDAPRDPLYKTEREVMKVFLTKHYRNRRLGDPEFVLDFEEIYVIDSKTKSITRAKVLVS 1648
            NKKD+DVEYDPLAAA AA +        I   +SKSF+STQGWDS+MVVDYRINE+EFHKISL+DCDFFIRKPPDPDNDVYDFREMYV+PPDTD+YSIP+VLA MPQKYIRCAMSDYGCY+VTEPPIDAPRDPLYK+ RE+ KVFLTKHYRNRRL DPEFVLD EEIYVIDSKTKSITRA+VLV+
Sbjct:   85 NKKDYDVEYDPLAAAMAAASGGGGDGD-IAFVQSKSFISTQGWDSEMVVDYRINEDEFHKISLLDCDFFIRKPPDPDNDVYDFREMYVTPPDTDIYSIPRVLAPMPQKYIRCAMSDYGCYDVTEPPIDAPRDPLYKSVREISKVFLTKHYRNRRLNDPEFVLDLEEIYVIDSKTKSITRARVLVT 268

HSP 2 Score: 73.9442 bits (180), Expect = 3.069e-22
Identity = 33/39 (84.62%), Postives = 36/39 (92.31%), Query Frame = -1 
Query:  427 QSERDDPTTVIEREEWDKTRQDMERHLRKLRDFSISNWF 543
              ERDDPTTVIEREEW KTR+DME+HLRKLRDFS+SNWF
Sbjct:  296 AGERDDPTTVIEREEWTKTREDMEKHLRKLRDFSVSNWF 334

HSP 3 Score: 60.8474 bits (146), Expect = 3.069e-22
Identity = 27/30 (90.00%), Postives = 29/30 (96.67%), Query Frame = -3 
Query:  620 VTVPGGRNRDRKNDLLVIRDNGNSFKIIHS 709
            VTVPGGR RDRK+DLLVIRDNGNSFKIIH+
Sbjct:  267 VTVPGGRKRDRKDDLLVIRDNGNSFKIIHA 296
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0097658 vs. ExPASy TrEMBL
Match: M4DN45_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra017932 PE=4 SV=1)

HSP 1 Score: 299.671 bits (766), Expect = 7.274e-92
Identity = 152/185 (82.16%), Postives = 167/185 (90.27%), Query Frame = -3 
Query: 1094 NKKDFDVEYDPLXXXXXXXXXXXTIDVDIQITESKSFVSTQGWDSDMVVDYRINEEEFHKISLMDCDFFIRKPPDPDNDVYDFREMYVSPPDTDVYSIPKVLALMPQKYIRCAMSDYGCYNVTEPPIDAPRDPLYKTEREVMKVFLTKHYRNRRLGDPEFVLDFEEIYVIDSKTKSITRAKVLVS 1648
            NKKD+DVEYDPLAAA AA +        I   +SKSF+STQGWDS+MVVDYRINE+EFHKISL+DCDFFIRKPPDPDNDVYDFREMYV+PPDTD+YSIP+VLA MPQKYIRCAMSDYGCY+VTEPPIDAPRDPLYK+ RE+ KVFLTKHYRNRRL DPEFVLD EEIYVIDSKTKSITRA+VLV+
Sbjct:   85 NKKDYDVEYDPLAAAMAAASGGGGDGD-IAFVQSKSFISTQGWDSEMVVDYRINEDEFHKISLLDCDFFIRKPPDPDNDVYDFREMYVTPPDTDIYSIPRVLAPMPQKYIRCAMSDYGCYDVTEPPIDAPRDPLYKSVREISKVFLTKHYRNRRLNDPEFVLDLEEIYVIDSKTKSITRARVLVT 268

HSP 2 Score: 73.9442 bits (180), Expect = 3.069e-22
Identity = 33/39 (84.62%), Postives = 36/39 (92.31%), Query Frame = -1 
Query:  427 QSERDDPTTVIEREEWDKTRQDMERHLRKLRDFSISNWF 543
              ERDDPTTVIEREEW KTR+DME+HLRKLRDFS+SNWF
Sbjct:  296 AGERDDPTTVIEREEWTKTREDMEKHLRKLRDFSVSNWF 334

HSP 3 Score: 60.8474 bits (146), Expect = 3.069e-22
Identity = 27/30 (90.00%), Postives = 29/30 (96.67%), Query Frame = -3 
Query:  620 VTVPGGRNRDRKNDLLVIRDNGNSFKIIHS 709
            VTVPGGR RDRK+DLLVIRDNGNSFKIIH+
Sbjct:  267 VTVPGGRKRDRKDDLLVIRDNGNSFKIIHA 296
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0097658 vs. ExPASy TrEMBL
Match: A0A0D3CC55_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 298.13 bits (762), Expect = 2.655e-91
Identity = 151/185 (81.62%), Postives = 166/185 (89.73%), Query Frame = -3 
Query: 1094 NKKDFDVEYDPLXXXXXXXXXXXTIDVDIQITESKSFVSTQGWDSDMVVDYRINEEEFHKISLMDCDFFIRKPPDPDNDVYDFREMYVSPPDTDVYSIPKVLALMPQKYIRCAMSDYGCYNVTEPPIDAPRDPLYKTEREVMKVFLTKHYRNRRLGDPEFVLDFEEIYVIDSKTKSITRAKVLVS 1648
            NKKD+DVEYDPLAAA AA +        I   +SKSF+STQGWDS+MVVDYRINE+EFHKISL+DCDFFIRKPPDPDNDVYDFREMYV+PPDTD+YSIP+VLA MPQKYIRCAMSDYGCY+VTEPPID PRDPLYK+ RE+ KVFLTKHYRNRRL DPEFVLD EEIYVIDSKTKSITRA+VLV+
Sbjct:   85 NKKDYDVEYDPLAAAMAAASGGGGDGD-IAFVQSKSFISTQGWDSEMVVDYRINEDEFHKISLLDCDFFIRKPPDPDNDVYDFREMYVTPPDTDIYSIPRVLAPMPQKYIRCAMSDYGCYDVTEPPIDTPRDPLYKSVREISKVFLTKHYRNRRLNDPEFVLDLEEIYVIDSKTKSITRARVLVT 268

HSP 2 Score: 73.9442 bits (180), Expect = 3.332e-22
Identity = 33/39 (84.62%), Postives = 36/39 (92.31%), Query Frame = -1 
Query:  427 QSERDDPTTVIEREEWDKTRQDMERHLRKLRDFSISNWF 543
              ERDDPTTVIEREEW KTR+DME+HLRKLRDFS+SNWF
Sbjct:  296 AGERDDPTTVIEREEWTKTREDMEKHLRKLRDFSVSNWF 334

HSP 3 Score: 60.4622 bits (145), Expect = 3.332e-22
Identity = 27/30 (90.00%), Postives = 29/30 (96.67%), Query Frame = -3 
Query:  620 VTVPGGRNRDRKNDLLVIRDNGNSFKIIHS 709
            VTVPGGR RDRK+DLLVIRDNGNSFKIIH+
Sbjct:  267 VTVPGGRKRDRKDDLLVIRDNGNSFKIIHA 296
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0097658 vs. ExPASy TrEMBL
Match: M5XFY6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009185mg PE=4 SV=1)

HSP 1 Score: 296.59 bits (758), Expect = 3.777e-91
Identity = 173/214 (80.84%), Postives = 198/214 (92.52%), Query Frame = -3 
Query: 1100 PSFLVRVXXXXXXXXXXXXXXXXXXXXXXXDNKKDFDVEYDPLXXXXXXXXXXXTIDVDIQITESKSFVSTQGWDSDMVVDYRINEEEFHKISLMDCDFFIRKPPDPDNDVYDFREMYVSPPDTDVYSIPKVLALMPQKYIRCAMSDYGCYNVTEPPIDAPRDPLYKTEREVMKVFLTKHYRNRRLGDPEFVLDFEEIYVIDSKTKSITRAKVL 1741
            PSFLVR DDGD D+ GPDDYDMD+EE+EE+DNKKDFD+EYD LAAA+AA A++   + DI + +SKSFV TQGWDS+MVVDYRINE+EFHKISL+DCDFFIRKPPDPDNDVYDFREMYV+PPDTDVY+IP+VLA MPQKYIRCA SD+ CYNVTEPPIDAPRDPLYK+ER+V+KV++TKHYRNRRL DP+FVLDFEEIYVIDSKTKSI+RAKVL
Sbjct:   53 PSFLVRADDGDGDSAGPDDYDMDDEELEEVDNKKDFDIEYDTLAAAAAAVAAANG-EEDIAMVQSKSFVFTQGWDSEMVVDYRINEDEFHKISLLDCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYAIPRVLAPMPQKYIRCAKSDFSCYNVTEPPIDAPRDPLYKSERDVLKVYMTKHYRNRRLRDPDFVLDFEEIYVIDSKTKSISRAKVL 265

HSP 2 Score: 75.0998 bits (183), Expect = 1.892e-11
Identity = 34/38 (89.47%), Postives = 36/38 (94.74%), Query Frame = -1 
Query:  427 SERDDPTTVIEREEWDKTRQDMERHLRKLRDFSISNWF 540
            SE+DDPTTVIEREEW KTRQDMERHL KLRDFS+SNWF
Sbjct:  266 SEKDDPTTVIEREEWKKTRQDMERHLSKLRDFSVSNWF 303
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0097658 vs. ExPASy TrEMBL
Match: A0A022Q8C2_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a010127mg PE=4 SV=1)

HSP 1 Score: 297.36 bits (760), Expect = 3.821e-91
Identity = 145/185 (78.38%), Postives = 160/185 (86.49%), Query Frame = -3 
Query: 1094 NKKDFDVEYDPLXXXXXXXXXXXTIDVDIQITESKSFVSTQGWDSDMVVDYRINEEEFHKISLMDCDFFIRKPPDPDNDVYDFREMYVSPPDTDVYSIPKVLALMPQKYIRCAMSDYGCYNVTEPPIDAPRDPLYKTEREVMKVFLTKHYRNRRLGDPEFVLDFEEIYVIDSKTKSITRAKVLVS 1648
            NKKDFDV+YD   A + A         DI +  SKSFVS  GWDS+ +VDYRINE+EFHKI L+DCDFFIRKPPDPDNDVYDFREMYV+PPDTD+Y+IPKVLA MPQKYIRCA SDYGCYNVTEPPI APRDP+YK+EREV+KVFLTKHYRNRRLGDPEF LDFEEIYVIDSKTKSITRAKV+V+
Sbjct:   74 NKKDFDVDYDTALAIAVAGHGGQD---DIAMVHSKSFVSIHGWDSEKIVDYRINEDEFHKICLLDCDFFIRKPPDPDNDVYDFREMYVTPPDTDIYAIPKVLAPMPQKYIRCAQSDYGCYNVTEPPISAPRDPMYKSEREVLKVFLTKHYRNRRLGDPEFTLDFEEIYVIDSKTKSITRAKVVVT 255

HSP 2 Score: 67.781 bits (164), Expect = 6.916e-18
Identity = 29/37 (78.38%), Postives = 34/37 (91.89%), Query Frame = -1 
Query:  427 ERDDPTTVIEREEWDKTRQDMERHLRKLRDFSISNWF 537
            ERDDPTTVIE+EEW K+R DME+HL KLRDF++SNWF
Sbjct:  285 ERDDPTTVIEKEEWSKSRDDMEKHLSKLRDFNVSNWF 321

HSP 3 Score: 51.9878 bits (123), Expect = 6.916e-18
Identity = 23/28 (82.14%), Postives = 25/28 (89.29%), Query Frame = -3 
Query:  626 VTVPGGRNRDRKNDLLVIRDNGNSFKII 709
            VTVPGG +RDRKNDLLV+RD G SFKII
Sbjct:  254 VTVPGGTDRDRKNDLLVVRDGGTSFKII 281
The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0097658 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of g.barbadense_cottongen_reftransV1_0097658 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A078F8W0_BRANA7.274e-9282.16BnaA06g15330D protein OS=Brassica napus GN=BnaA06g... [more]
M4DN45_BRARP7.274e-9282.16Uncharacterized protein OS=Brassica rapa subsp. pe... [more]
A0A0D3CC55_BRAOL2.655e-9181.62Uncharacterized protein OS=Brassica oleracea var. ... [more]
M5XFY6_PRUPE3.777e-9180.84Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
A0A022Q8C2_ERYGU3.821e-9178.38Uncharacterized protein OS=Erythranthe guttata GN=... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35994FAMILY NOT NAMEDcoord: 52..267
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..17
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..12
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 13..17
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 18..295

Sequences
The following sequences are available for this feature:

contig sequence

>g.barbadense_cottongen_reftransV1_0097658 ID=g.barbadense_cottongen_reftransV1_0097658; Name=g.barbadense_cottongen_reftransV1_0097658; organism=Gossypium barbadense; type=contig; length=1953bp
CGGAAATTTTATATTCTACTTTTTCAATATATGTTATTGATATGAGCAAC
TTGCAAGCAGACACATATCATATACGGTTGGACCAAAAGAGGCCAGCCCT
TTCTAACAGAGAACATGTTATTAAATGGGCCTAGTGTAAGAATTTTCAAA
GTAAAAGAGACCAATTGCTCCAAGTAAACGCCGATTATACAAGAGAAGAA
AAAGATTAAATTACAAGTTCTAACAACATACAACAAAATTGAACACGCCA
AGTGCCTGGCTAATTCCAACAACAACCATTTTCAGCATCAGCTAGGAACC
ATTGGTGAAGAAAGTGAATTTCCTAATCCTAAGTCTCAAGTTTTGATTTT
ACAAGTTCATCCTTCATTTTCTCACCGTGCTGATAAATCCAGGCAATCTT
CATGAAACAACCTCGACGTTCGATTAGAACCAATTCGAAATGCTGAAATC
TCGTAGCTTCCTGAGATGTCTTTCCATGTCTTGTCTGGTTTTGTCCCATT
CTTCCCTTTCGATTACAGTTGTAGGATCATCTCTTTCACTCTGGAAGCAC
AGAAAAGTAAATTAGGTAATGCAAAAACAGGGAGTATGGCAGAAATTGAT
ACGAAGCACGGATAGCCACCGAATGAATTATTTTGAAGGAGTTTCCGTTA
TCACGTATAACAAGTAGGTCATTCTTTCTATCCCGGTTTCTTCCTCCTGG
AACAGTGACCTACAGAAAGAATCAATTAACATGGTAAATCATTGAATGAG
TAACAAACATCTGATATGGATCAGAAAGTCAACTTTCAAGCATCGATAAA
AGATAGGATAAGAGGATTCCTTGGTGACTGACTACCCCAACTTCAATTTA
TCCTCAGAAAGAACCACAGTTAATAGGAGAAATATAGAAACATTATGAAA
TTTAGTTTCTTTTTCATTTTTCCGCTCGAACCGGCATCAATTGTTTGATA
TGTTCTGATGTTCATTGTTGAAGTTGTGCTTGAAATAAGTTCCGGAGCAA
GCTCAATTATATCGAAAAGAGAATGAAATGCAAGTCATCTTGTAGCCACA
TATGCGGTAGAAGTGTATCCAATGTAGATTTAAATACAGAGTTACTTACC
AAAACCTTTGCTCTGGTAATTGACTTGGTCTTTGAATCAATCACATATAT
CTCCTCAAAGTCTAGCACAAATTCGGGGTCACCTAATCTCCTGTTCCTAT
AATGTTTTGTTAAGAAAACCTTCATGACCTCTCGCTCCGTTTTATAAAGT
GGATCTCGAGGTGCATCAATGGGTGGCTCTGTAACATTGTAGCAGCCATA
ATCACTCATTGCACAGCGGATGTACTTTTGAGGCATTAGAGCCAAAACTT
TTGGAATAGAATACACGTCCGTATCCGGTGGAGAGACATACATCTCCCTG
AAATCATAAACATCATTATCCGGGTCAGGTGGTTTCCGAATAAAAAAATC
GCAATCCATCAAGCTAATCTTATGAAACTCCTCCTCATTTATCCTATAGT
CTACCACCATATCCGAGTCCCACCCTTGAGTCGACACAAAGCTCTTGCTT
TCAGTAATTTGAATGTCGACGTCAATAGTAGCAGAAGAAGCGGTGGCAGC
AGAGGCAGCAGCTAAAGGGTCGTATTCAACATCGAAGTCTTTCTTGTTGT
CCAGCTCTTCGACTTCTTCTTCGTCCATGTCGTAGTCATCGGGTCCTCCG
GCATCGGCGTCGCCGTCGTCGACTCGGACGAGGAACGAGGGTTTAAGGGT
TGGAGTTGAGGGGGAGTGGAGGGGTTTTGGTTTGAGAGAAGGGAAGGGAA
GGAGGGAGTGGTTGATGCGGAGGGAGGAGGAGGAGTATTTTGCAGTGAAA
AGTGGTGGGGAGAGGAAGAGGGTGGCGGTGGTAGTGGTGGCCATGGTGGC
GGGAGAACGGGGGAGAACAGAGTTCCGAGTTTGGATTAGATTTTTGGAAC
AAC
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