g.barbadense_cottongen_reftransV1_0097658, g.barbadense_cottongen_reftransV1_0097658 (contig) Gossypium barbadense

Overview


Name	g.barbadense_cottongen_reftransV1_0097658
Unique Name	g.barbadense_cottongen_reftransV1_0097658
Type	contig
Organism	Gossypium barbadense (Sea Island cotton)
Sequence length	1953

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
At02	chromosome	g.barbadense_cottongen_reftransV1_0097658:1..1953 . At02:14956428..14961352 +

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium barbadense CottonGen RefTrans V1	2016-11-01
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot	2016-11-01
InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1	2016-11-02
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL	2016-11-02

Homology

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097658 vs. ExPASy TrEMBL
Match: A0A059DB75_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A00239 PE=4 SV=1)

HSP 1 Score: 308.531 bits (789), Expect = 3.462e-95
Identity = 153/187 (81.82%), Postives = 170/187 (90.91%), Query Frame = -3

Query: 1094 NKKDFDVEYDPLXXXXXXXXXXXTIDVD--IQITESKSFVSTQGWDSDMVVDYRINEEEFHKISLMDCDFFIRKPPDPDNDVYDFREMYVSPPDTDVYSIPKVLALMPQKYIRCAMSDYGCYNVTEPPIDAPRDPLYKTEREVMKVFLTKHYRNRRLGDPEFVLDFEEIYVIDSKTKSITRAKVLVS 1648
            NKKDF+VEYDPL  A++  A+S + D D  I +  SKSFVS QGW S+MVVDYRINE+EFHKISL+DCDFFIRKPPDPDNDVYDFREMYV+PPDTDVY+IPKVLA MPQKYIRCAMSDYGCYNVTEPPIDA RDP+YK+ERE+ KVFLTKHYRNRRLGDPEFVLDFEEIYVIDSKTKSI+RAKV+V+
Sbjct:   85 NKKDFEVEYDPLTMAASLAAASGSADGDDDIAMVHSKSFVSIQGWGSEMVVDYRINEDEFHKISLLDCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYAIPKVLAPMPQKYIRCAMSDYGCYNVTEPPIDAYRDPMYKSEREITKVFLTKHYRNRRLGDPEFVLDFEEIYVIDSKTKSISRAKVIVT 271

HSP 2 Score: 76.6406 bits (187), Expect = 3.171e-22
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = -1

Query:  427 QSERDDPTTVIEREEWDKTRQDMERHLRKLRDFSISNWF 543
             SE+DDPTTVIEREEW KTRQDMERHLRKLRDFS+SNWF
Sbjct:  299 ASEKDDPTTVIEREEWVKTRQDMERHLRKLRDFSVSNWF 337

HSP 3 Score: 57.7658 bits (138), Expect = 3.171e-22
Identity = 25/30 (83.33%), Postives = 28/30 (93.33%), Query Frame = -3

Query:  620 VTVPGGRNRDRKNDLLVIRDNGNSFKIIHS 709
            VTVPGGR+RDRK+DLLVIRDNG SFKI H+
Sbjct:  270 VTVPGGRDRDRKDDLLVIRDNGTSFKITHA 299

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097658 vs. ExPASy TrEMBL
Match: V4KTM5_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10007813mg PE=4 SV=1)

HSP 1 Score: 309.686 bits (792), Expect = 8.857e-95
Identity = 156/185 (84.32%), Postives = 168/185 (90.81%), Query Frame = -3

Query: 1094 NKKDFDVEYDPLXXXXXXXXXXXTIDVDIQITESKSFVSTQGWDSDMVVDYRINEEEFHKISLMDCDFFIRKPPDPDNDVYDFREMYVSPPDTDVYSIPKVLALMPQKYIRCAMSDYGCYNVTEPPIDAPRDPLYKTEREVMKVFLTKHYRNRRLGDPEFVLDFEEIYVIDSKTKSITRAKVLVS 1648
            NKKD+DVEYDPLAAA AA +       DI   +SKSF+STQGWDSDMVVDYRINE+EFHKISL+DCDFFIRKPPDPDNDVYDFREMYV+PPDTDVYSIP+VLA MPQKYIRCAMSDYGCYNVTEPPIDAPRDPLYK+ERE+ KVFLTKHYRNRR  DPEFVLD EEIYVIDSKTKSITRA+VLV+
Sbjct:  150 NKKDYDVEYDPLAAAMAAASGGGD--GDIAFVQSKSFISTQGWDSDMVVDYRINEDEFHKISLLDCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYSIPRVLAPMPQKYIRCAMSDYGCYNVTEPPIDAPRDPLYKSEREISKVFLTKHYRNRRSNDPEFVLDLEEIYVIDSKTKSITRARVLVT 332

HSP 2 Score: 73.9442 bits (180), Expect = 3.133e-22
Identity = 33/37 (89.19%), Postives = 36/37 (97.30%), Query Frame = -1

Query:  427 ERDDPTTVIEREEWDKTRQDMERHLRKLRDFSISNWF 537
            ERDDPTTVIEREEW KTR+DME+HLRKLRDFS+SNWF
Sbjct:  362 ERDDPTTVIEREEWTKTREDMEKHLRKLRDFSVSNWF 398

HSP 3 Score: 60.4622 bits (145), Expect = 3.133e-22
Identity = 27/29 (93.10%), Postives = 28/29 (96.55%), Query Frame = -3

Query:  623 VTVPGGRNRDRKNDLLVIRDNGNSFKIIH 709
            VTVPGGR RDRK+DLLVIRDNGNSFKIIH
Sbjct:  331 VTVPGGRKRDRKDDLLVIRDNGNSFKIIH 359

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097658 vs. ExPASy TrEMBL
Match: V4L4F7_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10007813mg PE=4 SV=1)

HSP 1 Score: 307.375 bits (786), Expect = 1.022e-94
Identity = 155/183 (84.70%), Postives = 166/183 (90.71%), Query Frame = -3

Query: 1100 NKKDFDVEYDPLXXXXXXXXXXXTIDVDIQITESKSFVSTQGWDSDMVVDYRINEEEFHKISLMDCDFFIRKPPDPDNDVYDFREMYVSPPDTDVYSIPKVLALMPQKYIRCAMSDYGCYNVTEPPIDAPRDPLYKTEREVMKVFLTKHYRNRRLGDPEFVLDFEEIYVIDSKTKSITRAKVL 1648
            NKKD+DVEYDPLAAA AA +       DI   +SKSF+STQGWDSDMVVDYRINE+EFHKISL+DCDFFIRKPPDPDNDVYDFREMYV+PPDTDVYSIP+VLA MPQKYIRCAMSDYGCYNVTEPPIDAPRDPLYK+ERE+ KVFLTKHYRNRR  DPEFVLD EEIYVIDSKTKSITRA+VL
Sbjct:  150 NKKDYDVEYDPLAAAMAAASGGGD--GDIAFVQSKSFISTQGWDSDMVVDYRINEDEFHKISLLDCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYSIPRVLAPMPQKYIRCAMSDYGCYNVTEPPIDAPRDPLYKSEREISKVFLTKHYRNRRSNDPEFVLDLEEIYVIDSKTKSITRARVL 330

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097658 vs. ExPASy TrEMBL
Match: D7KK29_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_472396 PE=4 SV=1)

HSP 1 Score: 306.605 bits (784), Expect = 1.602e-94
Identity = 154/185 (83.24%), Postives = 167/185 (90.27%), Query Frame = -3

Query: 1094 NKKDFDVEYDPLXXXXXXXXXXXTIDVDIQITESKSFVSTQGWDSDMVVDYRINEEEFHKISLMDCDFFIRKPPDPDNDVYDFREMYVSPPDTDVYSIPKVLALMPQKYIRCAMSDYGCYNVTEPPIDAPRDPLYKTEREVMKVFLTKHYRNRRLGDPEFVLDFEEIYVIDSKTKSITRAKVLVS 1648
            NKKD+DVEYDPLAAA AA       D+     +SKSF+STQGWDS+MVVDYRINE+EFHKISLMDCDFFIRKPPDPDNDVYDFREMYV+PPDTD+YSIP+VLA MPQKYIRCAMSDYGCYNVTEPPIDAPRDPLYK+ERE+ KVFLTKHYRNRR  DPEFVLD EEIYVIDSKTKSITRA+VLV+
Sbjct:   80 NKKDYDVEYDPLAAAMAAAGGGGDGDI--AFVQSKSFISTQGWDSEMVVDYRINEDEFHKISLMDCDFFIRKPPDPDNDVYDFREMYVTPPDTDIYSIPRVLAPMPQKYIRCAMSDYGCYNVTEPPIDAPRDPLYKSEREISKVFLTKHYRNRRTNDPEFVLDLEEIYVIDSKTKSITRARVLVT 262

HSP 2 Score: 74.7146 bits (182), Expect = 8.243e-22
Identity = 33/38 (86.84%), Postives = 36/38 (94.74%), Query Frame = -1

Query:  427 SERDDPTTVIEREEWDKTRQDMERHLRKLRDFSISNWF 540
             ERDDPTTVIEREEW KTR+DME+HLRKLRDFS+SNWF
Sbjct:  291 GERDDPTTVIEREEWSKTREDMEKHLRKLRDFSVSNWF 328

HSP 3 Score: 58.151 bits (139), Expect = 8.243e-22
Identity = 26/29 (89.66%), Postives = 27/29 (93.10%), Query Frame = -3

Query:  623 VTVPGGRNRDRKNDLLVIRDNGNSFKIIH 709
            VTVPGGR RDRK+DLLVIRDNG SFKIIH
Sbjct:  261 VTVPGGRKRDRKDDLLVIRDNGTSFKIIH 289

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097658 vs. ExPASy TrEMBL
Match: Q9XI19_ARATH (AT1G21600 protein OS=Arabidopsis thaliana GN=F8K7.1 PE=2 SV=1)

HSP 1 Score: 305.834 bits (782), Expect = 3.163e-94
Identity = 154/185 (83.24%), Postives = 167/185 (90.27%), Query Frame = -3

Query: 1094 NKKDFDVEYDPLXXXXXXXXXXXTIDVDIQITESKSFVSTQGWDSDMVVDYRINEEEFHKISLMDCDFFIRKPPDPDNDVYDFREMYVSPPDTDVYSIPKVLALMPQKYIRCAMSDYGCYNVTEPPIDAPRDPLYKTEREVMKVFLTKHYRNRRLGDPEFVLDFEEIYVIDSKTKSITRAKVLVS 1648
            NKKD+DVEYDPLAAA AA       D+     +SKSF+STQGWDSDMVVDYRINE+EFHK+SLMDCDFFIRKPPDPDNDVYDFREMYV+PPDTD+YSIP+VLA MPQKYIRCAMSDYGCYNVTEPPIDAPRDPLYK+ERE+ KVFLTKHYRNRR  DPEFVLD EEIYVIDSKTKSITRA+VLV+
Sbjct:   80 NKKDYDVEYDPLAAAIAAAGGGGDGDI--AFVQSKSFISTQGWDSDMVVDYRINEDEFHKLSLMDCDFFIRKPPDPDNDVYDFREMYVTPPDTDIYSIPRVLAPMPQKYIRCAMSDYGCYNVTEPPIDAPRDPLYKSEREISKVFLTKHYRNRRTNDPEFVLDLEEIYVIDSKTKSITRARVLVT 262

HSP 2 Score: 74.3294 bits (181), Expect = 1.632e-21
Identity = 33/38 (86.84%), Postives = 36/38 (94.74%), Query Frame = -1

Query:  427 SERDDPTTVIEREEWDKTRQDMERHLRKLRDFSISNWF 540
             ERDDPTTVIEREEW KTR+DME+HLRKLRDFS+SNWF
Sbjct:  291 GERDDPTTVIEREEWTKTREDMEKHLRKLRDFSVSNWF 328

HSP 3 Score: 57.7658 bits (138), Expect = 1.632e-21
Identity = 26/29 (89.66%), Postives = 27/29 (93.10%), Query Frame = -3

Query:  623 VTVPGGRNRDRKNDLLVIRDNGNSFKIIH 709
            VTVPGGR RDRK+DLLVIRDNG SFKIIH
Sbjct:  261 VTVPGGRKRDRKDDLLVIRDNGTSFKIIH 289

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097658 vs. ExPASy TrEMBL
Match: V7AV50_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G129900g PE=4 SV=1)

HSP 1 Score: 306.605 bits (784), Expect = 3.521e-94
Identity = 151/185 (81.62%), Postives = 165/185 (89.19%), Query Frame = -3

Query: 1094 NKKDFDVEYDPLXXXXXXXXXXXTIDVDIQITESKSFVSTQGWDSDMVVDYRINEEEFHKISLMDCDFFIRKPPDPDNDVYDFREMYVSPPDTDVYSIPKVLALMPQKYIRCAMSDYGCYNVTEPPIDAPRDPLYKTEREVMKVFLTKHYRNRRLGDPEFVLDFEEIYVIDSKTKSITRAKVLVS 1648
            NKKDFD+EYDPL  A+ A       D DI I ES SFVSTQGW+SD VVDY+INE+EFHKISL+DCDFFIRKPPDPDNDVYDFREMYV+PPDTDVYS+P+VLA MPQKYIRCA SDY  YNVTEPPIDAPRDPLYKTER+V+KV+LTKHY+NRRLGD EFVLDFEEIYVIDSKTKSITRAKVLV+
Sbjct:  113 NKKDFDIEYDPLLPAAVAA------DDDITIVESGSFVSTQGWNSDTVVDYKINEDEFHKISLLDCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYSVPRVLAPMPQKYIRCAQSDYASYNVTEPPIDAPRDPLYKTERDVLKVYLTKHYKNRRLGDHEFVLDFEEIYVIDSKTKSITRAKVLVT 291

HSP 2 Score: 66.6254 bits (161), Expect = 4.389e-18
Identity = 28/39 (71.79%), Postives = 36/39 (92.31%), Query Frame = -1

Query:  427 QSERDDPTTVIEREEWDKTRQDMERHLRKLRDFSISNWF 543
             SE++DPTTVIE++EW+ +R +MERHL+KLRDFSISNWF
Sbjct:  319 ASEKEDPTTVIEKQEWETSRAEMERHLKKLRDFSISNWF 357

HSP 3 Score: 53.5286 bits (127), Expect = 4.389e-18
Identity = 23/30 (76.67%), Postives = 27/30 (90.00%), Query Frame = -3

Query:  620 VTVPGGRNRDRKNDLLVIRDNGNSFKIIHS 709
            VTVPGGR RDR++DLLVI D G+SFKIIH+
Sbjct:  290 VTVPGGRTRDRRSDLLVISDRGSSFKIIHA 319

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097658 vs. ExPASy TrEMBL
Match: E6NU80_JATCU (JMS09K11.8 protein OS=Jatropha curcas GN=JMS09K11.8 PE=4 SV=1)

HSP 1 Score: 305.064 bits (780), Expect = 6.244e-94
Identity = 150/185 (81.08%), Postives = 167/185 (90.27%), Query Frame = -3

Query: 1094 NKKDFDVEYDPLXXXXXXXXXXXTIDVDIQITESKSFVSTQGWDSDMVVDYRINEEEFHKISLMDCDFFIRKPPDPDNDVYDFREMYVSPPDTDVYSIPKVLALMPQKYIRCAMSDYGCYNVTEPPIDAPRDPLYKTEREVMKVFLTKHYRNRRLGDPEFVLDFEEIYVIDSKTKSITRAKVLVS 1648
            NKKD+D++YDP A  +AA       D DI +  SKSFVSTQGWDS+ +VDYRI+EEEFHKISL+DCDFFIRKPPDPDNDVYDFREMYV+PPDTD+Y+IPKVLA MPQKYIRCAMSDYG YNVTEPPIDAPRDPLYK+ERE++KVFLTKHYRNRR GDPEFVLDFEEIYVIDSKTKSITRAKV+V+
Sbjct:   85 NKKDYDLDYDPSAVVAAANVGG---DEDIAMVISKSFVSTQGWDSEKIVDYRIDEEEFHKISLLDCDFFIRKPPDPDNDVYDFREMYVTPPDTDIYAIPKVLAPMPQKYIRCAMSDYGRYNVTEPPIDAPRDPLYKSEREILKVFLTKHYRNRRFGDPEFVLDFEEIYVIDSKTKSITRAKVVVT 266

HSP 2 Score: 75.8702 bits (185), Expect = 1.915e-23
Identity = 34/39 (87.18%), Postives = 37/39 (94.87%), Query Frame = -1

Query:  427 QSERDDPTTVIEREEWDKTRQDMERHLRKLRDFSISNWF 543
             SE+DDPTTVIEREEW KTRQ+MERHLRKLRDFS+SNWF
Sbjct:  294 ASEKDDPTTVIEREEWAKTRQEMERHLRKLRDFSVSNWF 332

HSP 3 Score: 62.7734 bits (151), Expect = 1.915e-23
Identity = 27/30 (90.00%), Postives = 30/30 (100.00%), Query Frame = -3

Query:  620 VTVPGGRNRDRKNDLLVIRDNGNSFKIIHS 709
            VTVPGGRNRDRK+DLLVIRDNGN+FKIIH+
Sbjct:  265 VTVPGGRNRDRKSDLLVIRDNGNTFKIIHA 294

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097658 vs. ExPASy TrEMBL
Match: R0IIG2_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10009718mg PE=4 SV=1)

HSP 1 Score: 304.679 bits (779), Expect = 6.947e-94
Identity = 154/185 (83.24%), Postives = 167/185 (90.27%), Query Frame = -3

Query: 1094 NKKDFDVEYDPLXXXXXXXXXXXTIDVDIQITESKSFVSTQGWDSDMVVDYRINEEEFHKISLMDCDFFIRKPPDPDNDVYDFREMYVSPPDTDVYSIPKVLALMPQKYIRCAMSDYGCYNVTEPPIDAPRDPLYKTEREVMKVFLTKHYRNRRLGDPEFVLDFEEIYVIDSKTKSITRAKVLVS 1648
            NKKD+DVEYDPLAAA AA       D+     +SKSF+STQGWDS+MVVDYRINE+EFHKISLMDCDFFIRKPPDPDNDVYDFREMYV+PPDTD+YSIP+VLA MPQKYIRCAMSDYGCYNVTEPPIDAPRDPLYK+ERE+ KVFLTKHYRNRR  DPEFVLD EEIYVIDSKTKSITRA+VLV+
Sbjct:   80 NKKDYDVEYDPLAAAIAAAGGGGDGDI--AFVQSKSFISTQGWDSEMVVDYRINEDEFHKISLMDCDFFIRKPPDPDNDVYDFREMYVTPPDTDIYSIPRVLAPMPQKYIRCAMSDYGCYNVTEPPIDAPRDPLYKSEREISKVFLTKHYRNRRTNDPEFVLDLEEIYVIDSKTKSITRARVLVT 262

HSP 2 Score: 73.9442 bits (180), Expect = 1.013e-21
Identity = 33/38 (86.84%), Postives = 36/38 (94.74%), Query Frame = -1

Query:  427 SERDDPTTVIEREEWDKTRQDMERHLRKLRDFSISNWF 540
             ERDDPTTVIEREEW KTR+DME+HLRKLRDFS+SNWF
Sbjct:  291 GERDDPTTVIEREEWTKTREDMEKHLRKLRDFSVSNWF 328

HSP 3 Score: 58.5362 bits (140), Expect = 1.013e-21
Identity = 26/30 (86.67%), Postives = 28/30 (93.33%), Query Frame = -3

Query:  620 VTVPGGRNRDRKNDLLVIRDNGNSFKIIHS 709
            VTVPGGR RDRK+DLLVIRDNG SFKIIH+
Sbjct:  261 VTVPGGRKRDRKDDLLVIRDNGTSFKIIHA 290

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097658 vs. ExPASy TrEMBL
Match: M1CPQ7_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400028061 PE=4 SV=1)

HSP 1 Score: 302.368 bits (773), Expect = 7.417e-93
Identity = 149/192 (77.60%), Postives = 165/192 (85.94%), Query Frame = -3

Query: 1076 NKKDFDVEYDPLXXXXXXXX-XXXTIDVDIQITESKSFVSTQGWDSDMVVDYRINEEEFHKISLMDCDFFIRKPPDPDNDVYDFREMYVSPPDTDVYSIPKVLALMPQKYIRCAMSDYGCYNVTEPPIDAPRDPLYKTEREVMKVFLTKHYRNRRLGDPEFVLDFEEIYVIDSKTKSITRAKVLVSNSVFKS 1648
            NKKDFDV+YD L    +A + + A  D DI +  S SFV TQGWDS+ +VDYRI EEEFHKI L DCDFFIRKPPDPDNDVYDFREMYV+PPDTD+Y+IP+VLA MPQKYIRCAMSDYGCYNVTEPPIDAPRDP+YK+ERE+MKVFLTKHYRNRR GDPEF LDFEEIYVIDSKTKSITRAKV+V+    KS
Sbjct:   84 NKKDFDVDYDTLLGGGSAMSLAVARGDDDIVMVNSSSFVFTQGWDSEKIVDYRIKEEEFHKICLFDCDFFIRKPPDPDNDVYDFREMYVTPPDTDIYAIPRVLAPMPQKYIRCAMSDYGCYNVTEPPIDAPRDPMYKSEREIMKVFLTKHYRNRRAGDPEFALDFEEIYVIDSKTKSITRAKVVVTVPGGKS 275

HSP 2 Score: 69.3218 bits (168), Expect = 1.831e-20
Identity = 32/37 (86.49%), Postives = 34/37 (91.89%), Query Frame = -1

Query:  427 ERDDPTTVIEREEWDKTRQDMERHLRKLRDFSISNWF 537
            ERDD TTVIE+EEW KTRQDMERHL KLRDFS+SNWF
Sbjct:  299 ERDDFTTVIEKEEWKKTRQDMERHLSKLRDFSVSNWF 335

HSP 3 Score: 59.3066 bits (142), Expect = 1.831e-20
Identity = 27/30 (90.00%), Postives = 29/30 (96.67%), Query Frame = -3

Query:  620 VTVPGGRNRDRKNDLLVIRDNGNSFKIIHS 709
            VTVPGG++RDRKNDLLVIRDNGNSFKII S
Sbjct:  268 VTVPGGKSRDRKNDLLVIRDNGNSFKIIPS 297

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097658 vs. ExPASy TrEMBL
Match: A0A078EYF3_BRANA (BnaC05g16910D protein OS=Brassica napus GN=BnaC05g16910D PE=4 SV=1)

HSP 1 Score: 299.671 bits (766), Expect = 7.197e-92
Identity = 152/185 (82.16%), Postives = 167/185 (90.27%), Query Frame = -3

Query: 1094 NKKDFDVEYDPLXXXXXXXXXXXTIDVDIQITESKSFVSTQGWDSDMVVDYRINEEEFHKISLMDCDFFIRKPPDPDNDVYDFREMYVSPPDTDVYSIPKVLALMPQKYIRCAMSDYGCYNVTEPPIDAPRDPLYKTEREVMKVFLTKHYRNRRLGDPEFVLDFEEIYVIDSKTKSITRAKVLVS 1648
            NKKD+DVEYDPLAAA AA +        I   +SKSF+STQGWDS+MVVDYRINE+EFHKISL+DCDFFIRKPPDPDNDVYDFREMYV+PPDTD+YSIP+VLA MPQKYIRCAMSDYGCY+VTEPPIDAPRDPLYK+ RE+ KVFLTKHYRNRRL DPEFVLD EEIYVIDSKTKSITRA+VLV+
Sbjct:   85 NKKDYDVEYDPLAAAMAAASGGGGDGD-IAFVQSKSFISTQGWDSEMVVDYRINEDEFHKISLLDCDFFIRKPPDPDNDVYDFREMYVTPPDTDIYSIPRVLAPMPQKYIRCAMSDYGCYDVTEPPIDAPRDPLYKSVREISKVFLTKHYRNRRLNDPEFVLDLEEIYVIDSKTKSITRARVLVT 268

HSP 2 Score: 73.9442 bits (180), Expect = 1.183e-21
Identity = 33/39 (84.62%), Postives = 36/39 (92.31%), Query Frame = -1

Query:  427 QSERDDPTTVIEREEWDKTRQDMERHLRKLRDFSISNWF 543
              ERDDPTTVIEREEW KTR+DME+HLRKLRDFS+SNWF
Sbjct:  296 AGERDDPTTVIEREEWTKTREDMEKHLRKLRDFSVSNWF 334

HSP 3 Score: 58.5362 bits (140), Expect = 1.183e-21
Identity = 26/30 (86.67%), Postives = 28/30 (93.33%), Query Frame = -3

Query:  620 VTVPGGRNRDRKNDLLVIRDNGNSFKIIHS 709
            VTVPGGR RDRK+DLLVIRDNGNSF IIH+
Sbjct:  267 VTVPGGRKRDRKDDLLVIRDNGNSFTIIHA 296

The following BLAST results are available for this feature:

BLAST of g.barbadense_cottongen_reftransV1_0097658 vs. ExPASy Swiss-Prot
BLAST of g.barbadense_cottongen_reftransV1_0097658 vs. ExPASy TrEMBL

BLAST of g.barbadense_cottongen_reftransV1_0097658 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of g.barbadense_cottongen_reftransV1_0097658 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A059DB75_EUCGR	3.462e-95	81.82	Uncharacterized protein OS=Eucalyptus grandis GN=E...	[more]
V4KTM5_EUTSA	8.857e-95	84.32	Uncharacterized protein OS=Eutrema salsugineum GN=...	[more]
V4L4F7_EUTSA	1.022e-94	84.70	Uncharacterized protein OS=Eutrema salsugineum GN=...	[more]
D7KK29_ARALL	1.602e-94	83.24	Putative uncharacterized protein OS=Arabidopsis ly...	[more]
Q9XI19_ARATH	3.163e-94	83.24	AT1G21600 protein OS=Arabidopsis thaliana GN=F8K7....	[more]
V7AV50_PHAVU	3.521e-94	81.62	Uncharacterized protein OS=Phaseolus vulgaris GN=P...	[more]
E6NU80_JATCU	6.244e-94	81.08	JMS09K11.8 protein OS=Jatropha curcas GN=JMS09K11....	[more]
R0IIG2_9BRAS	6.947e-94	83.24	Uncharacterized protein OS=Capsella rubella GN=CAR...	[more]
M1CPQ7_SOLTU	7.417e-93	77.60	Uncharacterized protein OS=Solanum tuberosum GN=PG...	[more]
A0A078EYF3_BRANA	7.197e-92	82.16	BnaC05g16910D protein OS=Brassica napus GN=BnaC05g...	[more]

Pages

InterPro

Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35994	FAMILY NOT NAMED	coord: 52..267
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..1
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..17
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 2..12
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 13..17
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 18..295

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.barbadense_cottongen_reftransV1_0097658 ID=g.barbadense_cottongen_reftransV1_0097658; Name=g.barbadense_cottongen_reftransV1_0097658; organism=Gossypium barbadense; type=contig; length=1953bp
CGGAAATTTTATATTCTACTTTTTCAATATATGTTATTGATATGAGCAAC
TTGCAAGCAGACACATATCATATACGGTTGGACCAAAAGAGGCCAGCCCT
TTCTAACAGAGAACATGTTATTAAATGGGCCTAGTGTAAGAATTTTCAAA
GTAAAAGAGACCAATTGCTCCAAGTAAACGCCGATTATACAAGAGAAGAA
AAAGATTAAATTACAAGTTCTAACAACATACAACAAAATTGAACACGCCA
AGTGCCTGGCTAATTCCAACAACAACCATTTTCAGCATCAGCTAGGAACC
ATTGGTGAAGAAAGTGAATTTCCTAATCCTAAGTCTCAAGTTTTGATTTT
ACAAGTTCATCCTTCATTTTCTCACCGTGCTGATAAATCCAGGCAATCTT
CATGAAACAACCTCGACGTTCGATTAGAACCAATTCGAAATGCTGAAATC
TCGTAGCTTCCTGAGATGTCTTTCCATGTCTTGTCTGGTTTTGTCCCATT
CTTCCCTTTCGATTACAGTTGTAGGATCATCTCTTTCACTCTGGAAGCAC
AGAAAAGTAAATTAGGTAATGCAAAAACAGGGAGTATGGCAGAAATTGAT
ACGAAGCACGGATAGCCACCGAATGAATTATTTTGAAGGAGTTTCCGTTA
TCACGTATAACAAGTAGGTCATTCTTTCTATCCCGGTTTCTTCCTCCTGG
AACAGTGACCTACAGAAAGAATCAATTAACATGGTAAATCATTGAATGAG
TAACAAACATCTGATATGGATCAGAAAGTCAACTTTCAAGCATCGATAAA
AGATAGGATAAGAGGATTCCTTGGTGACTGACTACCCCAACTTCAATTTA
TCCTCAGAAAGAACCACAGTTAATAGGAGAAATATAGAAACATTATGAAA
TTTAGTTTCTTTTTCATTTTTCCGCTCGAACCGGCATCAATTGTTTGATA
TGTTCTGATGTTCATTGTTGAAGTTGTGCTTGAAATAAGTTCCGGAGCAA
GCTCAATTATATCGAAAAGAGAATGAAATGCAAGTCATCTTGTAGCCACA
TATGCGGTAGAAGTGTATCCAATGTAGATTTAAATACAGAGTTACTTACC
AAAACCTTTGCTCTGGTAATTGACTTGGTCTTTGAATCAATCACATATAT
CTCCTCAAAGTCTAGCACAAATTCGGGGTCACCTAATCTCCTGTTCCTAT
AATGTTTTGTTAAGAAAACCTTCATGACCTCTCGCTCCGTTTTATAAAGT
GGATCTCGAGGTGCATCAATGGGTGGCTCTGTAACATTGTAGCAGCCATA
ATCACTCATTGCACAGCGGATGTACTTTTGAGGCATTAGAGCCAAAACTT
TTGGAATAGAATACACGTCCGTATCCGGTGGAGAGACATACATCTCCCTG
AAATCATAAACATCATTATCCGGGTCAGGTGGTTTCCGAATAAAAAAATC
GCAATCCATCAAGCTAATCTTATGAAACTCCTCCTCATTTATCCTATAGT
CTACCACCATATCCGAGTCCCACCCTTGAGTCGACACAAAGCTCTTGCTT
TCAGTAATTTGAATGTCGACGTCAATAGTAGCAGAAGAAGCGGTGGCAGC
AGAGGCAGCAGCTAAAGGGTCGTATTCAACATCGAAGTCTTTCTTGTTGT
CCAGCTCTTCGACTTCTTCTTCGTCCATGTCGTAGTCATCGGGTCCTCCG
GCATCGGCGTCGCCGTCGTCGACTCGGACGAGGAACGAGGGTTTAAGGGT
TGGAGTTGAGGGGGAGTGGAGGGGTTTTGGTTTGAGAGAAGGGAAGGGAA
GGAGGGAGTGGTTGATGCGGAGGGAGGAGGAGGAGTATTTTGCAGTGAAA
AGTGGTGGGGAGAGGAAGAGGGTGGCGGTGGTAGTGGTGGCCATGGTGGC
GGGAGAACGGGGGAGAACAGAGTTCCGAGTTTGGATTAGATTTTTGGAAC
AAC

Search form

g.barbadense_cottongen_reftransV1_0097658, g.barbadense_cottongen_reftransV1_0097658 (contig) Gossypium barbadense

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