g.barbadense_cottongen_reftransV1_0097647, g.barbadense_cottongen_reftransV1_0097647 (contig) Gossypium barbadense
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0097647 vs. ExPASy Swiss-Prot
Match: PP357_ARATH (Pentatricopeptide repeat-containing protein At4g39530 OS=Arabidopsis thaliana GN=PCMP-E52 PE=3 SV=1) HSP 1 Score: 274.248 bits (700), Expect = 5.265e-78 Identity = 163/577 (28.25%), Postives = 290/577 (50.26%), Query Frame = 1 Query: 433 NPTTFSSLLASCVRLKSLTHGR----QIHAHIRTNGLENNEFLRAKLAHMYTSCGSIEDAQRVFDECTSNNAYSWNALLRGSVVSGRKRYLDVLSTFSEMRSLAVNLNEYTFSTVLKSFAGASAFRQGLKAHALLVKYGFINSSMLRTGLIELYFKCGKIKLAHRVFEEIPERDIILWGAVIAGFAHNRMQREALNYARWMISEGIYPNSVILTTILPVIGEVWARKVGQEVHAYVVKTKSYSKQLSIQSGLIDMYCKCGDMESGRQVFYCSGERNAISWTALMSGYISNG---RLEQALRSVVWMQQEGFKPDVVTVATVLPVCAQLRALNHGMEIHAYAVKNCFFPNVSIVTSLMIMYSKCGVLDYSLKLFNGLEARNVISWTAMIESYAESGCLPEAIGVFRSMQLSKHRPDSVVMARMLNICGELKAIKLGKEIHGQVLKKDFESIPSVSAEMVKMYGACGLMSNAKLVFDAVRVKGSMTWTAIIEAHGYNDLCEGAISLFHQMISDGFTPNHFTFKVVLSICRKAGLVDEACQIFSVMTRKYKVKVSEEHYCIMIELLNMSGRFEEAERFIQ 2142 N SS + +C L GR Q+ + + +G + + ++ L Y G+I+ A+ VFD + +W ++ G V GR Y+ L F ++ V + Y STVL + + G + HA +++YG + L LI+ Y KCG++ AH++F +P ++II W +++G+ N + +EA+ M G+ P+ ++IL + A G +VHAY +K + + + LIDMY KC + R+VF + + + A++ GY G L +AL M+ +P ++T ++L A L +L +IH K ++ ++L+ +YS C L S +F+ ++ ++++ W +M Y + EA+ +F +QLS+ RPD A M+ G L +++LG+E H Q+LK+ E P ++ ++ MY CG +A FD+ + + W ++I ++ + + A+ + +M+S+G PN+ TF VLS C AGLV++ + F +M R + ++ EHY M+ LL +GR +A I+ Sbjct: 145 NEYILSSFIQACSGLDG--RGRWMVFQLQSFLVKSGFDRDVYVGTLLIDFYLKDGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRS-YVS-LQLFYQLMEDNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHALGFGTQVHAYTIKA-NLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFAGYVQQSENEEALNLFLELQLSRERPDEFTFANMVTAAGNLASVQLGQEFHCQLLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYANHGEGKKALQMLEKMMSEGIEPNYITFVGVLSACSHAGLVEDGLKQFELMLR-FGIEPETEHYVCMVSLLGRAGRLNKARELIE 715 HSP 2 Score: 229.95 bits (585), Expect = 1.522e-62 Identity = 141/496 (28.43%), Postives = 251/496 (50.60%), Query Frame = 1 Query: 502 IHAHIRTNGLENNEFLRAKLAHMYTSCGSIEDAQRVFDECTSNNAYSWNALLRGSVVSGRKRYLDVLSTFSEM-RSLAVNLNEYTFSTVLKSFAGASAFRQGL--KAHALLVKYGFINSSMLRTGLIELYFKCGKIKLAHRVFEEIPERDIILWGAVIAGFAHNRMQREALNYARWMISEGIYPNSVILTTILPVIGEVWARKVGQEVHAYVVKTKSYSKQLSIQSGLIDMYCKCGDMESGRQVFYCSGERNAISWTALMSGYISNGRLEQALRSVVWMQQEGFKPDVVTVATVLPVCAQLRALNHGMEIHAYAVKNCFFPNVSIVTSLMIMYSKCGVLDYSLKLFNGLEARNVISWTAMIESYAESGC---LPEAIGVFRSMQLSKHRPDSVVMARMLNICGELKAIKLGKEIHGQVLKKDFESIPSVSAEMVKMYGACGLMSNAKLVFDAVRVKGSMTWTAIIEAHGYNDLCEGAISLFHQMISDGFTPNHFTF 1971 +H I GLE + +L L ++Y+ G + A++VF++ N SW+ ++ S + Y + L F E R+ + NEY S+ +++ +G + + + + LVK GF + T LI+ Y K G I A VF+ +PE+ + W +I+G +L ++ + + P+ IL+T+L + + G+++HA++++ S+ + LID Y KCG + + ++F +N ISWT L+SGY N ++A+ M + G KPD+ +++L CA L AL G ++HAY +K + + SL+ MY+KC L + K+F+ A +V+ + AMIE Y+ G L EA+ +FR M+ RP + +L L ++ L K+IHG + K + ++ +Y C + +++LVFD ++VK + W ++ + E A++LF ++ P+ FTF Sbjct: 66 VHGQIIVWGLELDTYLSNILINLYSRAGGMVYARKVFEKMPERNLVSWSTMV--SACNHHGIYEESLVVFLEFWRTRKDSPNEYILSSFIQACSGLDGRGRWMVFQLQSFLVKSGFDRDVYVGTLLIDFYLKDGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRY-GLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFAGYVQQSENEEALNLFLELQLSRERPDEFTF 558 HSP 3 Score: 185.652 bits (470), Expect = 8.709e-48 Identity = 143/548 (26.09%), Postives = 254/548 (46.35%), Query Frame = 1 Query: 445 FSSLLASCVRLKSLTHGRQIHAHIRTNGLENNEFLRAKLAHMYTSCGSIEDAQRVFDECTSNNAYSWNALLRGSVVSGRKRYLDVLSTFSEMRSLAVNLNEYTFSTVLKSFAGASAFRQGLKAHALLVKYGFINSSMLRTGLIELYFKCGKIKLAHRVFEEIPERDIILWGAVIAGFAHNRMQ---REALNYARWMISEGIYPNSVILTTILPVIGEVWARKVGQEVHAYVVKTKSYSKQLSIQSG--LIDMYCKCGDMESGRQVFYCSGERNAISWTALMSGYISNGRLEQALRSVVWMQQEGFKPDVVTVATVLPVCAQLRALNHGMEIHAYAVKNCFFPNVSIVTSLMIMYSKCGVLDYSLKLFNGLEARNVISWTAMIESYAESGCLPEAIGVFRSMQLSKHRPDSVVMARMLNICGELKAIKLGKEIHGQVLKKDFESIPSVSAEMVKMYGACGLMSNAKLVFDAVRVK-GSMTWTAIIEA---HGYNDLCEGAISLFHQMISDGFTPNHFTFKVVLSICRKAGLVDEACQIFSVMTRKYKVK 2061 S++L++C L L G+QIHAHI GLE + L L Y CG + A ++F+ + N SW LL G + + + + F+ M + + Y S++L S A A G + HA +K N S + LI++Y KC + A +VF+ D++L+ A+I G++ Q EALN R M I P+ + ++L + + + +++H + K Y L I +G LID+Y C ++ R VF ++ + W ++ +GY+ E+AL + +Q +PD T A ++ L ++ G E H +K N I +L+ MY+KCG + + K F+ +R+V+ W ++I SYA G +A+ + M P+ + +L+ C ++ G + +L+ E MV + G G ++ A+ + + + K ++ W +++ G +L E A + ++SD FT ++ +I G+ EA ++ M + VK Sbjct: 252 LSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMPNKNIISWTTLLSGYKQNALHK--EAMELFTSMSKFGLKPDMYACSSILTSCASLHALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFK---YGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFAGYVQQSENEEALNLFLELQLSRERPDEFTFANMVTAAGNLASVQLGQEFHCQLLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYANHGEGKKALQMLEKMMSEGIEPNYITFVGVLSACSHAGLVEDGLKQFELMLRFGIEPETEHYVCMVSLLGRAGRLNKARELIEKMPTKPAAIVWRSLLSGCAKAGNVELAEHAAEM--AILSDPKDSGSFT--MLSNIYASKGMWTEAKKVRERMKVEGVVK 790 HSP 4 Score: 177.178 bits (448), Expect = 6.694e-45 Identity = 107/398 (26.88%), Postives = 205/398 (51.51%), Query Frame = 1 Query: 814 HALLVKYGFINSSMLRTGLIELYFKCGKIKLAHRVFEEIPERDIILWGAVIAGFAHNRMQREAL-NYARWMISEGIYPNSVILTTILPVIGEVWARKVGQ--EVHAYVVKTKSYSKQLSIQSGLIDMYCKCGDMESGRQVFYCSGERNAISWTALMSGYISNGRLEQALRSVVWMQQEGFKPDVVTVATVLPVCAQLRALNHGMEIHAYAVKNCFFPNVSIVTSLMIMYSKCGVLDYSLKLFNGLEARNVISWTAMIESYAESGCLPEAIGVFRSMQLSKHRPDSVVMARMLNICGELKAIKLGKEIHGQVLKKDFESIPSVSAEMVKMYGACGLMSNAKLVFDAVRVKGSMTWTAIIEAHGYNDL-----CEGAISLFHQMISDGFTPNHFTFKVVL 1983 H ++ +G + L LI LY + G + A +VFE++PER+++ W +++ H+ + E+L + + + PN IL++ + + R ++ +++VK+ + + + + + LID Y K G+++ R VF E++ ++WT ++SG + GR +L+ + ++ PD ++TVL C+ L L G +IHA+ ++ + S++ L+ Y KCG + + KLFNG+ +N+ISWT ++ Y ++ EA+ +F SM +PD + +L C L A+ G ++H +K + + V+ ++ MY C +++A+ VFD + + A+IE GY+ L A+++F M P+ TF +L Sbjct: 67 HGQIIVWGLELDTYLSNILINLYSRAGGMVYARKVFEKMPERNLVSWSTMVSACNHHGIYEESLVVFLEFWRTRKDSPNEYILSSFIQACSGLDGRGRWMVFQLQSFLVKS-GFDRDVYVGTLLIDFYLKDGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMIE--GYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLL 461 HSP 5 Score: 169.088 bits (427), Expect = 2.844e-42 Identity = 104/413 (25.18%), Postives = 203/413 (49.15%), Query Frame = 1 Query: 367 RQNKL-KEALAILDYVDQQGIPVNPTTFSSLLASCVRLKSLTHGRQIHAHIRTNGLENNEFLRAKLAHMYTSCGSIEDAQRVFDECTSNNAYSWNALLRGSVVSGRKRYL-DVLSTFSEMRSLAVNLNEYTFSTVLKSFAGASAFRQGLKAHALLVKYGFINSSMLRTGLIELYFKCGKIKLAHRVFEEIPERDIILWGAVIAGFAHNRMQREALNYARWMISEGIYPNSVILTTILPVIGEVWARKVGQEVHAYVVKTKSYSKQLSIQSGLIDMYCKCGDMESGRQVFYCSGERNAISWTALMSGYISNGRLEQALRSVVWMQQEGFKPDVVTVATVLPVCAQLRALNHGMEIHAYAVKNCFFPNVSIVTSLMIMYSKCGVLDYSLKLFNGLEAR-NVISWTAMIESYAESG 1596 +QN L KEA+ + + + G+ + SS+L SC L +L G Q+HA+ L N+ ++ L MY C + DA++VFD + + +NA++ G G + L + L+ F +MR + + TF ++L++ A ++ + H L+ KYG + LI++Y C +K + VF+E+ +D+++W ++ AG+ EALN + P+ ++ G + + ++GQE H ++K + I + L+DMY KCG E + F + R+ + W +++S Y ++G ++AL+ + M EG +P+ +T VL C+ + G++ ++ P ++ + + G L+ + +L + + I W +++ A++G Sbjct: 326 KQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFAGYVQQSENEEALNLFLELQLSRERPDEFTFANMVTAAGNLASVQLGQEFHCQLLK-RGLECNPYITNALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYANHGEGKKALQMLEKMMSEGIEPNYITFVGVLSACSHAGLVEDGLKQFELMLRFGIEPETEHYVCMVSLLGRAGRLNKARELIEKMPTKPAAIVWRSLLSGCAKAG 737 HSP 6 Score: 116.316 bits (290), Expect = 2.550e-25 Identity = 86/333 (25.83%), Postives = 159/333 (47.75%), Query Frame = 1 Query: 352 IQAFAR---QNKLKEALAILDYVDQQGIPVNPTTFSSLLASCVRLKSLTHGRQIHAHIRTNGLENNEFLRAKLAHMYTSCGSIEDAQRVFDECTSNNAYSWNALLRGSVVSGRKRYLDVLSTFSEMRSLAVNLNEYTFSTVLKSFAGASAFRQGLKAHALLVKYGFINSSMLRTGLIELYFKCGKIKLAHRVFEEIPERDIILWGAVIAGFAHNRMQREALNYARWMISEGIYPNSVILTTILPVIGEVWARKVGQEVHAYVVKTKSYSKQLSIQSG----------LIDMYCKCGDMESGRQVF-YCSGERNAISWTALMSGYISNGRLEQA 1308 I+ ++R Q +L EAL I + + I + TF SLL + L SL +QIH + GL + F + L +Y++C ++D++ VFDE + WN++ G V + L+ F E++ +E+TF+ ++ + ++ + G + H L+K G + + L+++Y KCG + AH+ F+ RD++ W +VI+ +A++ ++AL M+SEGI PN + +L HA +V+ +L ++ G ++ + + G + R++ + AI W +L+SG G +E A Sbjct: 423 IEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFAGYVQQSENE--EALNLFLELQLSRERPDEFTFANMVTAAGNLASVQLGQEFHCQLLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYANHGEGKKALQMLEKMMSEGIEPNYITFVGVLSACS-----------HAGLVEDGLKQFELMLRFGIEPETEHYVCMVSLLGRAGRLNKARELIEKMPTKPAAIVWRSLLSGCAKAGNVELA 742
BLAST of g.barbadense_cottongen_reftransV1_0097647 vs. ExPASy Swiss-Prot
Match: PPR45_ARATH (Pentatricopeptide repeat-containing protein At1g15510, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H73 PE=3 SV=1) HSP 1 Score: 274.633 bits (701), Expect = 8.058e-78 Identity = 178/606 (29.37%), Postives = 314/606 (51.82%), Query Frame = 1 Query: 352 IQAFARQNKLKEALAILDYVDQQGIPVNPTTFSSLLASCVRLKSLTHGRQIHA----HIRTNGLE-NNEFLRAKLAHMYTSCGSIEDAQRVFDECTSNNAYSWNALLRGSVVSGRKRYLD-VLSTFSEMRSLA-VNLNEYTFSTVLKSFAGASAFRQGLKAHALLVKYGFINSSMLRTGLIELYFKCGKIKLAHRVFEEIPERDIILWGAVIAGFAHNRMQREALNYARWMISEGIYPNSVILTTILPVIGEVWARKVGQEVHAYVVKTKSYSKQLSIQSGLIDMYCKCGDMESGRQVFYCSGERNAISWTALMSGYISNGRLEQALRSVVWMQQEGFKPDVVTVATVLPVCAQLRALNHGMEIHAYAVKNCFFPNVSIVTSLMIMYSKCGVLDYSLKLFNGLEARNVISWTAMIESYAESGCLPEAIGVFRSMQLSKHRPDSVVMARMLNICGELKAIKLGKEIHGQVLKKDFESIPSVSAEMVKMYGACGLMSNAKLVFDAVRVKGSMTWTAIIEAHGYNDLCEGA--ISLFHQMISDGFTPNHFTFKVVLSICRKAGLVDEACQIFSVMTRKYKVKVSEEHYCIMIELLNMSGRFEEAERFIQ 2142 + KL+EA+ +L+ + + + V+ F +L+ C ++ G ++++ + + G+E N FL M+ G++ DA VF + + N +SWN L+ G G Y D + + M + V + YTF VL++ G +G + H +V+YG+ + LI +Y KCG +K A +F+ +P RDII W A+I+G+ N M E L M + P+ + LT+++ + R++G+++HAYV+ T ++ +S+ + L MY G ++F ++ +SWT ++SGY N ++A+ + M Q+ KPD +TVA VL CA L L+ G+E+H A+K V + +L+ MYSKC +D +L +F+ + +NVISWT++I + EA+ R M+++ +P+++ + L C + A+ GKEIH VL+ + ++ MY CG M+ A F++ + K +W ++ GY++ +G+ + LF +M+ P+ TF +L C K+ +V + FS M Y V + +HY +++LL +G +EA +FIQ Sbjct: 66 LHGLCANGKLEEAMKLLNSMQELRVAVDEDVFVALVRLCEWKRAQEEGSKVYSIALSSMSSLGVELGNAFLA-----MFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQG---YFDEAMCLYHRMLWVGGVKPDVYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFDRMPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVISACELLGDRRLGRDIHAYVITT-GFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVSWTTMISGYEYNFLPDKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLISYVIVANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEALIFLRQMKMTL-QPNAITLTAALAACARIGALMCGKEIHAHVLRTGVGLDDFLPNALLDMYVRCGRMNTAWSQFNSQK-KDVTSWNILLT--GYSERGQGSMVVELFDRMVKSRVRPDEITFISLLCGCSKSQMVRQGLMYFSKM-EDYGVTPNLKHYACVVDLLGRAGELQEAHKFIQ 657 HSP 2 Score: 184.496 bits (467), Expect = 2.502e-47 Identity = 130/520 (25.00%), Postives = 251/520 (48.27%), Query Frame = 1 Query: 352 IQAFARQNKLKEALAILDYVDQ-QGIPVNPTTFSSLLASCVRLKSLTHGRQIHAHIRTNGLENNEFLRAKLAHMYTSCGSIEDAQRVFDECTSNNAYSWNALLRGSVVSGRKRYLDVLSTFSEMRSLAVNLNEYTFSTVLKSFAGASAFRQGLKAHALLVKYGFINSSMLRTGLIELYFKCGKIKLAHRVFEEIPERDIILWGAVIAGFAHNRMQREALNYARWMISEGIYPNSVILTTILPVIGEVWARKVGQEVHAYVVKTKSYSKQLSIQSGLIDMYCKCGDMESGRQVFYCSGERNAISWTALMSGYISNGRLEQALRSVVWMQQEGFKPDVVTVATVLPVCAQLRALNHGMEIHAYAVK-----NCFFPNVSIVTSLMIMYSKCGVLDYSLKLFNGLEARNVISWTAMIESYAESGCLPEAIGVFRSMQLSKHRPDSVVMARMLNICGELKAIKLGKEIHGQVLKKDFESIPSVS--AEMVKMYGACGLMSNA-KLVFDAVRVKGSMTWTAIIEA 1884 + +A+Q EA+ + + G+ + TF +L +C + L G+++H H+ G E + + L MY CG ++ A+ +FD + SWNA++ G +G + L F MR L+V+ + T ++V+ + R G HA ++ GF + L ++Y G + A ++F + +DI+ W +I+G+ +N + +A++ R M + + P+ + + +L + G E+H +K + S + + + LI+MY KC ++ +F+ +N ISWT++++G N R +AL + M+ +P+ +T+ L CA++ AL G EIHA+ ++ + F PN +L+ MY +CG ++ + FN + ++V SW ++ Y+E G + +F M S+ RPD + +L C + + ++ G ++ +D+ P++ A +V + G G + A K + W A++ A Sbjct: 167 VGGYAKQGYFDEAMCLYHRMLWVGGVKPDVYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFDRMPRRDIISWNAMISGYFENGMCH--EGLELFFAMRGLSVDPDLMTLTSVISACELLGDRRLGRDIHAYVITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVSWTTMISGYEYNFLPDKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLISYVI-VANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEALIFLRQMKMT-LQPNAITLTAALAACARIGALMCGKEIHAHVLRTGVGLDDFLPN-----ALLDMYVRCGRMNTAWSQFNS-QKKDVTSWNILLTGYSERGQGSMVVELFDRMVKSRVRPDEITFISLLCGCSKSQMVRQGLMYFSKM--EDYGVTPNLKHYACVVDLLGRAGELQEAHKFIQKMPVTPDPAVWGALLNA 674
BLAST of g.barbadense_cottongen_reftransV1_0097647 vs. ExPASy Swiss-Prot
Match: PP237_ARATH (Pentatricopeptide repeat-containing protein At3g16610 OS=Arabidopsis thaliana GN=PCMP-E91 PE=2 SV=1) HSP 1 Score: 268.855 bits (686), Expect = 2.542e-77 Identity = 168/575 (29.22%), Postives = 299/575 (52.00%), Query Frame = 1 Query: 445 FSSLLASCVRLKSLTHGRQIHAHIRTNGLE-NNEFLRAKLAHMYTSCGSIEDAQRVFDECTSN--NAYSWNALLRGSVVSG-RKRYLDVLSTFSEMRSLAVNLNEYTFSTVLKSFAGASAFRQGLKAHALLVKYGFINSSMLRTGLIELYFKCGKIKLAHRVFEEIPERDIILWGAVIAGFAHNRMQREALNYARWMIS-EGIYPNSVILTTILPVIGEVWARKVGQEVHAYVVKTKSYSKQLSIQSGLIDMYCKCGDMESGRQVFYCSGERNAISWTALMSGYISNGRLEQALRSVVWMQQEGFKPDVVTVAT--VLPVCAQLRALNHGMEIHAYAVKNCFFPNVSIVTSLMIMYSKCGVLDYSLKLFNGLEARNVISWTAMIESYAESGCLPE-AIGVFRSMQLSKHRPDSVVMARMLNICGELKAIKLGKEIHGQVLKKDFESIPSVSAEMVKMYGACGLMSNAKLVFDAVRVKGSMTWTAIIEAHGYNDLCEGAISLFHQMISDGFTPNHFTFKVVLSICRKAGLVDEACQIFSVMTR-KYKVKVSEEHYCIMIELLNMSGRFEEAERFIQ 2142 F SLL +C+R ++L G+ IH H+ L ++ + L +Y SC +E A+ VFDE N +W+ ++R + ++ LD+ + +M + V +YT+ VLK+ AG A G H+ + F + T L++ Y KCG++++A +VF+E+P+RD++ W A+I+GF+ + + + M +G+ PN + + P +G A + G+ VH Y + +S L +++G++D+Y K + R+VF ++N ++W+A++ GY+ N +++A M V VA +L CA+ L+ G +H YAVK F ++++ +++ Y+K G L + + F+ + ++VIS+ ++I + C PE + +F M+ S RPD + +L C L A+ G HG + + S+ ++ MY CG + AK VFD + + ++W ++ G + L + A+SLF+ M G P+ T +LS C +GLVDE Q+F+ M+R + V +HY M +LL +G +EA F+ Sbjct: 2 FLSLLETCIRSRNLVLGQVIHQHLLKRSLTLSSSTVLVNLTRLYASCNEVELARHVFDEIPHPRINPIAWDLMIRAYASNDFAEKALDL---YYKMLNSGVRPTKYTYPFVLKACAGLRAIDDGKLIHSHVNCSDFATDMYVCTALVDFYAKCGELEMAIKVFDEMPKRDMVAWNAMISGFSLHCCLTDVIGLFLDMRRIDGLSPNLSTIVGMFPALGRAGALREGKAVHGYCTRM-GFSNDLVVKTGILDVYAKSKCIIYARRVFDLDFKKNEVTWSAMIGGYVENEMIKEAGEVFFQMLVNDNVAMVTPVAIGLILMGCARFGDLSGGRCVHCYAVKAGFILDLTVQNTIISFYAKYGSLCDAFRQFSEIGLKDVISYNSLITGCVVN-CRPEESFRLFHEMRTSGIRPDITTLLGVLTACSHLAALGHGSSCHGYCVVHGYAVNTSICNALMDMYTKCGKLDVAKRVFDTMHKRDIVSWNTMLFGFGIHGLGKEALSLFNSMQETGVNPDEVTLLAILSACSHSGLVDEGKQLFNSMSRGDFNVIPRIDHYNCMTDLLARAGYLDEAYDFVN 571 HSP 2 Score: 239.58 bits (610), Expect = 9.083e-67 Identity = 151/534 (28.28%), Postives = 266/534 (49.81%), Query Frame = 1 Query: 310 LPLHSKNPQAIYKDIQAFARQNKLKEALAILDYVDQQGIPVNPTTFSSLLASCVRLKSLTHGRQIHAHIRTNGLENNEFLRAKLAHMYTSCGSIEDAQRVFDECTSNNAYSWNALLRGSVVSGRKRYLDVLSTFSEMRSL-AVNLNEYTFSTVLKSFAGASAFRQGLKAHALLVKYGFINSSMLRTGLIELYFKCGKIKLAHRVFEEIPERDIILWGAVIAGFAHNRMQREALN-YARWMISEGI-YPNSVILTTILPVIGEVWARKVGQEVHAYVVKTKSYSKQLSIQSGLIDMYCKCGDMESGRQVFYCSGERNAISWTALMSGYISNGRLEQALRSVVWMQQEGFKPDVVTVATVLPVCAQLRALNHGMEIHAYAVKNCFFPNVSIVTSLMIMYSKCGVLDYSLKLFNGLEARNVISWTAMIESYAESGCLPEAIGVFRSMQLSKHRPDSVVMARMLNICGELKAIKLGKEIHGQVLKKDFESIPSVSAE--MVKMYGACGLMSNA-----KLVFDA-VRVKGSM---TWT 1869 +P NP A I+A+A + ++AL + + G+ T+ +L +C L+++ G+ IH+H+ + + ++ L Y CG +E A +VFDE + +WNA++ G S DV+ F +MR + ++ N T + + A A R+G H + GF N +++TG++++Y K I A RVF+ +++ + W A+I G+ N M +EA + + ++++ + V + IL G+ VH Y VK + L++Q+ +I Y K G + + F G ++ IS+ +L++G + N R E++ R M+ G +PD+ T+ VL C+ L AL HG H Y V + + N SI +LM MY+KCG LD + ++F+ + R+++SW M+ + G EA+ +F SMQ + PD V + +L+ C + GK++ + + DF IP + M + G + A K+ F+ +RV G++ WT Sbjct: 61 IPHPRINPIAWDLMIRAYASNDFAEKALDLYYKMLNSGVRPTKYTYPFVLKACAGLRAIDDGKLIHSHVNCSDFATDMYVCTALVDFYAKCGELEMAIKVFDEMPKRDMVAWNAMISG--FSLHCCLTDVIGLFLDMRRIDGLSPNLSTIVGMFPALGRAGALREGKAVHGYCTRMGFSNDLVVKTGILDVYAKSKCIIYARRVFDLDFKKNEVTWSAMIGGYVENEMIKEAGEVFFQMLVNDNVAMVTPVAIGLILMGCARFGDLSGGRCVHCYAVKA-GFILDLTVQNTIISFYAKYGSLCDAFRQFSEIGLKDVISYNSLITGCVVNCRPEESFRLFHEMRTSGIRPDITTLLGVLTACSHLAALGHGSSCHGYCVVHGYAVNTSICNALMDMYTKCGKLDVAKRVFDTMHKRDIVSWNTMLFGFGIHGLGKEALSLFNSMQETGVNPDEVTLLAILSACSHSGLVDEGKQLFNSMSRGDFNVIPRIDHYNCMTDLLARAGYLDEAYDFVNKMPFEPDIRVLGTLLSACWT 591
BLAST of g.barbadense_cottongen_reftransV1_0097647 vs. ExPASy Swiss-Prot
Match: PP307_ARATH (Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2) HSP 1 Score: 273.478 bits (698), Expect = 1.111e-76 Identity = 162/588 (27.55%), Postives = 284/588 (48.30%), Query Frame = 1 Query: 385 EALAILDYVDQQ--GIPVNPTTFSSLLASCVRLKSLTHGRQIHAHIRTNGLENNEFLRAKLAHMYTSCGSIEDAQRVFDECTSNNAYSWNALLRGSVVSGRKRYLDVLSTFSEMRSLAVNLNEYTFSTVLKSFAGASAFRQGLKAHALLVKYGFINSSMLRTGLIELYFKCGKIKLAHRVFEEIPERDIILWGAVIAGFAHNRMQREALNYARWMISEGIYPNSVILTTILPVIGEVWARKVGQEVHAYVVKTKSYSKQLSIQSGLIDMYCKCGDMESGRQVFYCSGERNAISWTALMSGYISNGRLEQALRSVVWMQQEGFKPDVVTVATVLPVCAQLRALNHGMEIHAYAVKNCFFPNVSIVTSLMIMYSKCGVLDYSLKLFNGLEARNVISWTAMIESYAESGCLPEAIGVFRSMQLSKHRPDSVVMARMLNICGELKAIKLGKEIHGQVLKKDFESIPSVSAEMVKMYGACGLMSNAKLVFDAVRVKGSMTWTAIIEAHGYNDLCEGAISLFHQMISDGFTPNHFTFKVVLSICRKAGLVDEACQIFSVMTRKYKVKVSEEHYCIMIELLNMSGRFEEAERFIQ 2142 EA AI + D GI P FSS+L++C +++SL G Q+H + G ++ ++ L +Y G++ A+ +F + +A ++N L+ G G + F M + + T ++++ + + +G + HA K GF +++ + L+ LY KC I+ A F E +++LW ++ + R + R M E I PN +IL + ++G+++H+ ++KT ++ + S LIDMY K G +++ + ++ +SWT +++GY ++AL + M G + D V + + CA L+AL G +IHA A + F ++ +L+ +YS+CG ++ S F EA + I+W A++ + +SG EA+ VF M ++ + E +K GK++H + K ++S V ++ MY CG +S+A+ F V K ++W AII A+ + A+ F QMI PNH T VLS C GLVD+ F M +Y + EHY ++++L +G A+ FIQ Sbjct: 269 EAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGE--KAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKT-NFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQ 853 HSP 2 Score: 245.743 bits (626), Expect = 2.324e-67 Identity = 154/545 (28.26%), Postives = 273/545 (50.09%), Query Frame = 1 Query: 400 LDYVDQQGIPVNPTTFSSLLASCVRLK-SLTHGRQIHAHIRTNGLENNEFLRAKLAHMYTSCGSIEDAQRVFDECTSNNAYSWNALLRGSVVSGRKRYLDVLSTFSEMRSLAVNLNEYTFSTVLKSFAGAS-AFRQGLKAHALLVKYGFINSSMLRTGLIELYFKCGKIKLAHRVFEEIPERDIILWGAVIAGFAHNRMQREALNYARWMISEGIYPNSVILTTILPVIGEVWARKVGQEVHAYVVKTKSYSKQLSIQSGLIDMYCKCGDMESGRQVFYCSGERNAISWTALMSGYISNGRLEQALRSVVWMQQEGFKPDVVTVATVLPVCAQLRALNHGMEIHAYAVKNCFFPNVSIVTSLMIMYSKCGVLDYSLKLFNGLEARNVISWTAMIESYAESGCLPEAIGVFRSMQLSKHRPDSVVMARMLNICGELKAIKLGKEIHGQVLKKDFESIPSVSAEMVKMYGACGLMSNAKLVFDAVRVKGSMTWTAIIEAHGYNDLCEGAISLFHQMISDGFTPNHFTFKVVLSICRKAGLVDEACQI 2028 +D V+ +GI N T LL C++ SL GR++H+ I GL++N L KL Y G + A +VFDE ++WN +++ ++ R +V F M S V NE TFS VL++ G S AF + HA ++ G +S+++ LI+LY + G + LA RVF+ + +D W A+I+G + N + EA+ M GI P +++L ++ + ++G+++H V+K +S + + L+ +Y G++ S +F +R+A+++ L++G G E+A+ M +G +PD T+A+++ C+ L G ++HAY K F N I +L+ +Y+KC ++ +L F E NV+ W M+ +Y L + +FR MQ+ + P+ +L C L ++LG++IH Q++K +F+ V + ++ MY G + A + K ++WT +I + + + A++ F QM+ G + +S C + E QI Sbjct: 72 IDSVENRGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPERTIFTWNKMIKE--LASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKL-GFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQI 613 HSP 3 Score: 207.994 bits (528), Expect = 1.375e-54 Identity = 133/511 (26.03%), Postives = 238/511 (46.58%), Query Frame = 1 Query: 382 KEALAILDYVDQQGIPVNPTTFSSLLASCVRLKSLTHGRQIHAHIRTNGLENNEFLRAKLAHMYTSCGSIEDAQRVFDECTSNNAYSWNALLRGSVVSGRKRYLDVLSTFSEMRSLAVNLNEYTFSTVLKSFAGASAFRQGLKAHALLVKYGFINSSMLRTGLIELYFKCGKIKLAHRVFEEIPERDIILWGAVIAGFAHNRMQREALNYARWMISEGIYPNSVILTTILPVIGEVWARKVGQEVHAYVVKTKSYSKQLSIQSGLIDMYCKCGDMESGRQVFYCSGERNAISWTALMSGYISNGRLEQALRSVVWMQQEGFKPDVVTVATVLPVCAQLRALNHGMEIHAYAVKNCFFPNVSIVTSLMIMYSKCGVLDYSLKLFNGLEARNVISWTAMIESYAESGCLPEAIGVFRSMQLSKHRPDSVVMARMLNICGELKAIKLGKEIHGQVLKKDFESI---------PSVSAEMVKMYGACGLMSNAKLVFDAVRVK-GSMTWTAIIEA 1884 ++A+ + + G+ + T +SL+ +C +L G+Q+HA+ G +N + L ++Y C IE A F E N WN +L + R + F +M+ + N+YT+ ++LK+ G + H+ ++K F ++ + + LI++Y K GK+ A + +D++ W +IAG+ +AL R M+ GI + V LT + + A K GQ++HA +S L Q+ L+ +Y +CG +E F + + I+W AL+SG+ +G E+ALR V M +EG + T + + ++ + G ++HA K + + +L+ MY+KCG + + K F + +N +SW A+I +Y++ G EA+ F M S RP+ V + +L+ C + + G FES+ P +V M GL+S AK + +K ++ W ++ A Sbjct: 371 EKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLR--NSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQAC-VSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAY--------FESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSA 870 HSP 4 Score: 162.54 bits (410), Expect = 7.342e-40 Identity = 102/420 (24.29%), Postives = 195/420 (46.43%), Query Frame = 1 Query: 790 AFRQGLKAHALLVKYGFINSSMLRTGLIELYFKCGKIKLAHRVFEEIPERDIILWGAVIAGFAHNRMQREALNYARWMISEGIYPNSVILTTILPVI-GEVWARKVGQEVHAYVVKTKSYSKQLSIQSGLIDMYCKCGDMESGRQVFYCSGERNAISWTALMSGYISNGRLEQALRSVVWMQQEGFKPDVVTVATVLPVCAQLRALNHGMEIHAYAVKNCFFPNVSIVTSLMIMYSKCGVLDYSLKLFNGLEARNVISWTAMIESYAESGCLPEAIGVFRSMQLSKHRPDSVVMARMLNICGELKAIKLGKEIHGQVLKKDFESIPSVSAEMVKMYGACGLMSNAKLVFDAVRVKGSMTWTAIIEAHGYNDLCEGAISLFHQMISDGFTPNHFTFKVVLSICRKAGLVDEACQIFSVMTR 2046 + +G K H+ ++K G ++ L L + Y G + A +VF+E+PER I W +I A + E M+SE + PN + +L G A V +++HA ++ + + + LID+Y + G ++ R+VF ++ SW A++SG N +A+R M G P ++VL C ++ +L G ++H +K F + + +L+ +Y G L + +F+ + R+ +++ +I ++ G +A+ +F+ M L PDS +A ++ C + G+++H K F S + ++ +Y C + A F V+ + W ++ A+G D + +F QM + PN +T+ +L C + G ++ QI S + + Sbjct: 100 SLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARIL-YQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIK 518 HSP 5 Score: 162.54 bits (410), Expect = 7.342e-40 Identity = 97/354 (27.40%), Postives = 168/354 (47.46%), Query Frame = 1 Query: 358 AFARQNKLKEALAILDYVDQQGIPVNPTTFSSLLASCVRLKSLTHGRQIHAHIRTNGLENNEFLRAKLAHMYTSCGSIEDAQRVFDECTSNNAYSWNALLRGSVVSGRKRYLD-VLSTFSEMRSLAVNLNEYTFSTVLKSFAGASAFRQGLKAHALLVKYGFINSSMLRTGLIELYFKCGKIKLAHRVFEEIPERDIILWGAVIAGFAHNRMQREALNYARWMISEGIYPNSVILTTILPVIGEVWARKVGQEVHAYVVKTKSYSKQLSIQSGLIDMYCKCGDMESGRQVFYCSGERNAISWTALMSGYISNGRLEQALRSVVWMQQEGFKPDVVTVATVLPVCAQLRALNHGM 1416 A+ + L+ + I + + I N T+ S+L +C+RL L G QIH+ I + N ++ + L MY G ++ A + + SW ++ G + + D L+TF +M + +E + + + AG A ++G + HA GF + + L+ LY +CGKI+ ++ FE+ D I W A+++GF + EAL M EGI N+ + + E K G++VHA + KT Y + + + LI MY KCG + + F +N +SW A+++ Y +G +AL S M +P+ VT+ VL C+ + ++ G+ Sbjct: 464 AYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYT---QYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKT-GYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGI 813 HSP 6 Score: 123.25 bits (308), Expect = 2.022e-27 Identity = 78/328 (23.78%), Postives = 154/328 (46.95%), Query Frame = 1 Query: 352 IQAFARQNKLKEALAILDYVDQQGIPVNPTTFSSLLASCVRLKSLTHGRQIHAHIRTNGLENNEFLRAKLAHMYTSCGSIEDAQRVFDECTSNNAYSWNALLRGSVVSGRKRYLDVLSTFSEMRSLAVNLNEYTFSTVLKSFAGASAFRQGLKAHALLVKYGFINSSMLRTGLIELYFKCGKIKLAHRVFEEIPERDIILWGAVIAGFAHNRMQREALNYARWMISEGIYPNSVILTTILPVIGEVWARKVGQEVHAYVVKTKSYSKQLSIQSGL----------IDMYCKCGDMESGRQVFY-CSGERNAISWTALMSGYISNGRLE 1302 I + + N +AL + +GI + ++ +++C L++L G+QIHA +G ++ + L +Y+ CG IE++ F++ + + +WNAL+ G SG + L F M ++ N +TF + +K+ + + +QG + HA++ K G+ + + + LI +Y KCG I A + F E+ ++ + W A+I ++ + EAL+ MI + PN V L +L + V K +Y + ++ + GL +DM + G + ++ + +A+ W L+S + + +E Sbjct: 563 IAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNE--EALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHI----------GLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNME 878
BLAST of g.barbadense_cottongen_reftransV1_0097647 vs. ExPASy Swiss-Prot
Match: PP220_ARATH (Pentatricopeptide repeat-containing protein At3g09040, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E88 PE=2 SV=1) HSP 1 Score: 273.092 bits (697), Expect = 1.254e-76 Identity = 167/616 (27.11%), Postives = 306/616 (49.68%), Query Frame = 1 Query: 328 NPQAIYKDIQAFARQNKLKEALAILDYVDQQGIPVNPT--TFSSLLASCVRLKSLTHGRQIHAHIRTNGLENNEFLRAKLAHMYTSCGSIEDAQRVFDECTSNNAYSWNALLRGSVVSGRKRYLDVLSTFSEMRSLAVNLNEYTFSTVLKSFAGASAFRQGLKAHALLVKYGFINSSMLRTGLIELYFKCGKIKLAHRVFEEIPERDIILWGAVIAGFAHNRMQREALNYARWMISEGIYPNSVILTTILPVIGEVWARKVGQEVHAYVVKTKSYSKQLSIQSGLIDMYCKCGDMESGRQVFYCSGERNAISWTALMSGYISNGRLEQALRSVVWMQQEGFKPDVVTVATVLPVCAQLRALNHGMEIHAYAVKNCFFPNVSIV-TSLMIMYSKCGVLDYSLKLFNGLEA-RNVISWTAMIESYAESGCLPEAIGVFRSMQLSKHRPDSVVMARMLNICGELKAIKLGKEIHGQV--LKKDFESIPSVSAEMVKMYGACGLMSNAKLVFDAVRVKGS-MTWTAIIEAHGYNDLCEGAISLFHQMISDGFTPNHFTFKVVLSICRKAGLVDEACQIFSVMTRKYKVKVSEEHYCIMIELLNMSGRFEEAERFIQMKSL 2154 +P + ++ + E +AI + + + V T T S+L++ + +L G +HA GL +N ++ + L MY+ C +E A +VF+ N WNA++RG +G V+ F +M+S N++++TF+++L + A + G + H++++K + + L+++Y KCG ++ A ++FE + +RD + W +I + + + EA + + M GI + L + L V G++VH VK + L S LIDMY KCG ++ R+VF E + +S AL++GY S LE+A+ M G P +T AT++ C + +L G + H K F + SL+ MY + + LF+ L + ++++ WT M+ ++++G EA+ ++ M+ PD +L +C L +++ G+ IH + L D + + S + ++ MY CG M + VFD +R + + ++W ++I + N E A+ +F M P+ TF VL+ C AG V + +IF +M +Y ++ +H M++LL G +EA+ FI+ ++L Sbjct: 289 SPDVVAWNVMISGHGKRGCETVAIEYFFNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEEKNDVFWNAMIRGYAHNGESH--KVMELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEMGSQFHSIIIKKKLAKNLFVGNALVDMYAKCGALEDARQIFERMCDRDNVTWNTIIGSYVQDENESEAFDLFKRMNLCGIVSDGACLASTLKACTHVHGLYQGKQVHCLSVKC-GLDRDLHTGSSLIDMYSKCGIIKDARKVFSSLPEWSVVSMNALIAGY-SQNNLEEAVVLFQEMLTRGVNPSEITFATIVEACHKPESLTLGTQFHGQITKRGFSSEGEYLGISLLGMYMNSRGMTEACALFSELSSPKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGVLPDQATFVTVLRVCSVLSSLREGRAIHSLIFHLAHDLDELTSNT--LIDMYAKCGDMKGSSQVFDEMRRRSNVVSWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGVLTACSHAGKVSDGRKIFEMMIGQYGIEARVDHVACMVDLLGRWGYLQEADDFIEAQNL 898 HSP 2 Score: 229.565 bits (584), Expect = 5.508e-62 Identity = 148/558 (26.52%), Postives = 248/558 (44.44%), Query Frame = 1 Query: 433 NPTTFSSLLASCVRLKSLTHGRQIHAHIRTNGLENNEFLRAKLAHMYTSCGSIEDAQRVFDECTSNNAYSWNALLRGSVVSGRKRYLDVLSTFSEMRSLAVNLNEYTFSTVLKSFAGASAFRQGLKAHALLVKYGFINSSMLRTGLIELYFKCGKIKLAHRVFEEIPERDIILWGAVIAGFAHNRMQREALNYARWMISEGIYPNSVILTTILPVIGEVWARKVGQEVHAYVVKTKSYSKQLSIQSGLIDMYCKCGDMESGRQVFYCSGERNAISWTALMSGYISNGRLEQALRSVVWMQQEGFKPDVVTVATVLPVCAQLRALNHGMEIHAYAVKNCFFPNVSIVTSLMIMYSKCGVLDYSLKLFNGLEARNVISWTAMIESYAESGCLPEAIGVFRSMQLSKHRPDSVVMARMLNICGELKAIKLGKEIHGQVLKKDFESIPSVSAEMVKMYGACGLMSNAKLVFDAVRVKGSMTWTAIIEAHGYNDLCEGAISLFHQMISDGFTPNHFTFKVVLSICRKAGLVDEACQIFSVMTRKYKVKVSEEHYCIMIELLNM 2106 N TFS +L++C R ++ GRQIH + GLE N + L MY C I DA+RVF+ N W L G V +G + + F MR + F TV+ + Y + GK+K A +F E+ D++ W +I+G + A+ Y M + L ++L IG V +G VHA +K + + + S L+ MY KC ME+ +VF E+N + W A++ GY NG + + + M+ G+ D T ++L CA L G + H+ +K N+ + +L+ MY+KCG L+ + ++F + R+ ++W +I SY + EA +F+ M L D +A L C + + GK++H +K + + ++ MY CG++ +A+ VF ++ ++ A+I + N+L E A+ LF +M++ G P+ TF ++ C K + Q +T++ S E + I LL M Sbjct: 159 NKFTFSIVLSTCARETNVEFGRQIHCSMIKMGLERNSYCGGALVDMYAKCDRISDARRVFEWIVDPNTVCWTCLFSGYVKAGLPE--EAVLVFERMRDEGHRPDHLAFVTVINT-----------------------------------YIRLGKLKDARLLFGEMSSPDVVAWNVMISGHGKRGCETVAIEYFFNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKL-GLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEEKNDVFWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEMGSQFHSIIIKKKLAKNLFVGNALVDMYAKCGALEDARQIFERMCDRDNVTWNTIIGSYVQDENESEAFDLFKRMNLCGIVSDGACLASTLKACTHVHGLYQGKQVHCLSVKCGLDRDLHTGSSLIDMYSKCGIIKDARKVFSSLPEWSVVSMNALIAGYSQNNL-EEAVVLFQEMLTRGVNPSEITFATIVEACHKPESLTLGTQFHGQITKR---GFSSEGEYLGISLLGM 674 HSP 3 Score: 216.853 bits (551), Expect = 1.173e-57 Identity = 150/542 (27.68%), Postives = 258/542 (47.60%), Query Frame = 1 Query: 316 LHSKNPQAIYKDIQAFARQNKLKEALAILDYVDQQGIPVNPTTFSSLLASCVRLKSLTHGRQIHAHIRTNGLENNEFLRAKLAHMYTSCGSIEDAQRVFDECTSNNAYSWNALLRGSVVSGRKRYLDVLSTFSEMRSLAVNLNEYTFSTVLKSFAGASAFRQGLKAHALLVKYGFINSSMLRTGLIELYFKCGKIKLAHRVFEEIPERDIILWGAVIAGFAHNRMQREALNYARWMISEGIYPNSVILTTILPVIGEVWARKVGQEVHAYVVKTKSYSKQLSIQSGLIDMYCKCGDMESGRQVFY-CSGERNAISWTALMSGYISNGRLEQALRSVVWMQQEGFKPDVVTVATVLPVCAQLRALNHGMEIHAYAVKNCFFPNVSIVTSLMIMYSKCGVLDYSLKLFNGLEAR-NVISWTAMIESYAESGCLPEAIGVFRSMQLSKHRPDSVVMARMLNICGELKAIKLGKEIHGQVLKK-DFESIPSVSAEMVKMYGACGLMSNAKLVFDAVRVK-GSMTWTAIIEA---HGYNDLCEGAIS 1920 L KN I+ +A + + + + + G ++ TF+SLL++C L G Q H+ I L N F+ L MY CG++EDA+++F+ + +WN ++ GS V + F M + + ++ LK+ QG + H L VK G + LI++Y KCG IK A +VF +PE ++ A+IAG++ N ++ EA+ + M++ G+ P+ + TI+ + + +G + H + K S+ + L+ MY M +F S ++ + WT +MSG+ NG E+AL+ M+ +G PD T TVL VC+ L +L G IH+ + +L+ MY+KCG + S ++F+ + R NV+SW ++I YA++G +A+ +F SM+ S PD + +L C + G++I ++ + E+ A MV + G G + A +A +K + W++++ A HG D G IS Sbjct: 388 LEEKNDVFWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEMGSQFHSIIIKKKLAKNLFVGNALVDMYAKCGALEDARQIFERMCDRDNVTWNTII-GSYVQDENES-EAFDLFKRMNLCGIVSDGACLASTLKACTHVHGLYQGKQVHCLSVKCGLDRDLHTGSSLIDMYSKCGIIKDARKVFSSLPEWSVVSMNALIAGYSQNNLE-EAVVLFQEMLTRGVNPSEITFATIVEACHKPESLTLGTQFHGQITKRGFSSEGEYLGISLLGMYMNSRGMTEACALFSELSSPKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGVLPDQATFVTVLRVCSVLSSLREGRAIHSLIFHLAHDLDELTSNTLIDMYAKCGDMKGSSQVFDEMRRRSNVVSWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGVLTACSHAGKVSDGRKIFEMMIGQYGIEARVDHVACMVDLLGRWGYLQEADDFIEAQNLKPDARLWSSLLGACRIHG--DDIRGEIS 924 HSP 4 Score: 177.178 bits (448), Expect = 1.424e-44 Identity = 120/494 (24.29%), Postives = 225/494 (45.55%), Query Frame = 1 Query: 481 SLTHGRQIHAHIRTNGLENNEFLRAKLAHMYTSCGSIEDAQRVFDECTSNNAYSWNALLRGSVVSGRKRYLDVLSTFSEMRSLAVNLNEYTFSTVLKSFAGASAFRQGLKAHALLVKYGFINSSMLRTGLIELYFKCGKIKLAHRVFEEIPERDIILWGAVIAGFAHNRMQREALNYARWMISEGIYPNSVILTTILPVIGEVWARKVGQEVHAYVVKTKSYSKQLSIQSGLIDMYCKCGDMESGRQVFYCSGERNAISWTALMSGYISNGRLEQALRSVVWMQQEGFKPDVVTVATVLPVCAQLRALNHGMEIHAYAVKNCFFPNVSIVTSLMIMYSKCGVLDYSLKLFNGLEARNVISWTAMIESYAESGCLPEAIGVFRSMQLSKHRPDSVVMARMLNICGELKAIKLGKEIHGQVLKKDFESIPSVSAEMVKMYGACGLMSNAKLVFDAVRVKGSMTWTAIIEAHGYNDLCEGAISLFHQM-----ISDG 1947 +L G+ +H+ G+++ L + +Y C + A++ FD + +WN++L S+ S + VL +F + + N++TFS VL + A + G + H ++K G +S L+++Y KC +I A RVFE I + + + W + +G+ + EA+ M EG P+ + T+ I+ Y + G ++ R +F + ++W ++SG+ G A+ M++ K T+ +VL + L+ G+ +HA A+K N+ + +SL+ MYSKC ++ + K+F LE +N + W AMI YA +G + + +F M+ S + D +L+ C +++G + H ++KK V +V MY CG + +A+ +F+ + + ++TW II ++ ++ A LF +M +SDG Sbjct: 75 ALRIGKAVHSKSLILGIDSEGRLGNAIVDLYAKCAQVSYAEKQFD-FLEKDVTAWNSML--SMYSSIGKPGKVLRSFVSLFENQIFPNKFTFSIVLSTCARETNVEFGRQIHCSMIKMGLERNSYCGGALVDMYAKCDRISDARRVFEWIVDPNTVCWTCLFSGYVKAGLPEEAVLVFERMRDEGHRPDHLAFVTV------------------------------------INTYIRLGKLKDARLLFGEMSSPDVVAWNVMISGHGKRGCETVAIEYFFNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEEKNDVFWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEMGSQFHSIIIKKKLAKNLFVGNALVDMYAKCGALEDARQIFERMCDRDNVTWNTIIGSYVQDENESEAFDLFKRMNLCGIVSDG 529 HSP 5 Score: 154.836 bits (390), Expect = 2.311e-37 Identity = 112/465 (24.09%), Postives = 199/465 (42.80%), Query Frame = 1 Query: 676 GRKRYLDVLSTFSEM--RSLAVNLNEYTFSTVLKSFAG-----ASAFRQGLKAHALLVKYGFINSSMLRTGLIELYFKCGKIKLAHRVFEEIPERDIILWGAVIAGFAHNRMQREALNYARWMISEGIYPNSVILTTILPVIGEVWARKVGQEVHAYVVKTKSYSKQLSIQSGLIDMYCKCGDMESGRQVFYCSGERNAISWTALMSGYISNGRLEQALRSVVWMQQEGFKPDVVTVATVLPVCAQLRALNHGMEIHAYAVKNCFFPNVSIVTSLMIMYSKCGVLDYSLKLFNGLEARNVISWTAMIESYAESGCLPEAIGVFRSMQLSKHRPDSVVMARMLNICGELKAIKLGKEIHGQVLKKDFESIPSVSAEMVKMYGACGLMSNAKLVFDAVRVKGSMTWTAIIEAHGYNDLCEGAISLFHQMISDGFTPNHFTFKVVLSICRKAGLVDEACQIFSVMTRK 2049 GR+ Y VL + ++ R L + L + K F A A R G H+ + G + L +++LY KC ++ A + F+ + E+D+ W ++++ ++ + L + I+PN + +L + G+++H ++K + L+DMY KC + R+VF + N + WT L SGY+ G E+A+ M+ EG +PD + TV+ Y + G L + LF + + +V++W MI + + GC AI F +M+ S + + +L+ G + + LG +H + +K S V + +V MY C M A VF+A+ K + W A+I + +N + LF M S G+ + FTF +LS C + ++ Q S++ +K Sbjct: 30 GRRIYGHVLPSHDQIHQRLLEICLGQCKLFKSRKVFDEMPQRLALALRIGKAVHSKSLILGIDSEGRLGNAIVDLYAKCAQVSYAEKQFDFL-EKDVTAWNSMLSMYSSIGKPGKVLRSFVSLFENQIFPNKFTFSIVLSTCARETNVEFGRQIHCSMIKM-GLERNSYCGGALVDMYAKCDRISDARRVFEWIVDPNTVCWTCLFSGYVKAGLPEEAVLVFERMRDEGHRPDHLAFVTVINT-----------------------------------YIRLGKLKDARLLFGEMSSPDVVAWNVMISGHGKRGCETVAIEYFFNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEEKNDVFWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEMGSQFHSIIIKK 457
BLAST of g.barbadense_cottongen_reftransV1_0097647 vs. ExPASy TrEMBL
Match: M4DI08_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra016135 PE=4 SV=1) HSP 1 Score: 865.144 bits (2234), Expect = 0.000e+0 Identity = 409/629 (65.02%), Postives = 500/629 (79.49%), Query Frame = 1 Query: 277 PFFQKAPSSPSLPLHSKNPQAIYKDIQAFARQNKLKEALAILDYVDQQGIPVNPTTFSSLLASCVRLKSLTHGRQIHAHIRTNGLENNEFLRAKLAHMYTSCGSIEDAQRVFDECTSNNAYSWNALLRGSVVSGRKRYLDVLSTFSEMRSLAVNLNEYTFSTVLKSFAGASAFRQGLKAHALLVKYGFINSSMLRTGLIELYFKCGKIKLAHRVFEEIPERDIILWGAVIAGFAHNRMQREALNYARWMIS-EGIYPNSVILTTILPVIGEVWARKVGQEVHAYVVKTKSYSKQLSIQSGLIDMYCKCGDMESGRQVFYCSGERNAISWTALMSGYISNGRLEQALRSVVWMQQEGFKPDVVTVATVLPVCAQLRALNHGMEIHAYAVKNCFFPNVSIVTSLMIMYSKCGVLDYSLKLFNGLEARNVISWTAMIESYAESGCLPEAIGVFRSMQLSKHRPDSVVMARMLNICGELKAIKLGKEIHGQVLKKDFESIPSVSAEMVKMYGACGLMSNAKLVFDAVRVKGSMTWTAIIEAHGYNDLCEGAISLFHQMISDGFTPNHFTFKVVLSICRKAGLVDEACQIFSVMTRKYKVKVSEEHYCIMIELLNMSGRFEEAERFIQMKSLSS 2160 PF ++ SLPLHSKNP I++ +Q AR+NKL++AL ILDY++Q+GIPVN TTFS+LLA+CVR KSL HG+Q+H HIR NGLE +EFL KL HMYT+CGSIEDAQ+VFDE +S+N YSWNALLRG+V+SG++RY DV+STF+EMR V+LN Y+ S V KSFAGASA RQGLK HAL VK G +S L+T ++++YFKCGK+ LA RVF+EI ERDI+ WGA+IAG AHN+ Q EAL R MIS EGIYPNSVI+TTILPV+G+V K+G+EVHA+V+K+K+Y +Q + SGLID YCKCGDM SGR+VFY S +RNAISWTALMSGY +NGR +QALRS+VWMQQEGFKPDVVT+ATVLPVCA+LRA+ G EIH YA+K + PNVS+VTSLM+MYSKCGV +Y +LF+ LE RNV +WTAMI+SY E+G L I VFRSM LSKHRPDSV M R+L +C ELKA+KLGKEIHG +LKK+FESIP VSA ++KMYG CG + +A FDAV VKGS+TWTAIIEA+G N A++ F QM S+GFTPN FTF VLSIC +AG DEAC+ F +M + YK++ SE+ Y I+IELLN GR EEA+R M S SS Sbjct: 58 PFRERDAFPSSLPLHSKNPHIIHRALQNLARRNKLEDALTILDYLEQRGIPVNATTFSALLAACVRRKSLIHGKQVHVHIRINGLEKSEFLGTKLVHMYTACGSIEDAQKVFDESSSSNVYSWNALLRGTVISGKRRYKDVVSTFAEMREQGVDLNVYSLSNVFKSFAGASALRQGLKTHALAVKNGLFSSDFLKTSVVDMYFKCGKVGLARRVFDEIEERDIVAWGAMIAGLAHNKRQWEALGLFRTMISQEGIYPNSVIITTILPVLGDVKGLKLGKEVHAHVLKSKNYVEQPFVHSGLIDFYCKCGDMVSGRRVFYGSKQRNAISWTALMSGYAANGRFDQALRSIVWMQQEGFKPDVVTIATVLPVCAELRAVKQGKEIHCYALKKLYLPNVSLVTSLMVMYSKCGVPEYPARLFDRLEQRNVKAWTAMIDSYVETGDLEAGIEVFRSMLLSKHRPDSVTMGRVLTVCSELKALKLGKEIHGHILKKEFESIPFVSARIIKMYGQCGDLKSANSSFDAVVVKGSLTWTAIIEAYGCNGRLRDAVNCFEQMRSEGFTPNAFTFTAVLSICSRAGFADEACRFFHLMHQTYKLQPSEDQYSIVIELLNRFGRVEEAQRLAIMSSSSS 686
BLAST of g.barbadense_cottongen_reftransV1_0097647 vs. ExPASy TrEMBL
Match: A0A078C9D9_BRANA (BnaC06g32570D protein OS=Brassica napus GN=BnaC06g32570D PE=4 SV=1) HSP 1 Score: 859.366 bits (2219), Expect = 0.000e+0 Identity = 407/629 (64.71%), Postives = 499/629 (79.33%), Query Frame = 1 Query: 277 PFFQKAPSSPSLPLHSKNPQAIYKDIQAFARQNKLKEALAILDYVDQQGIPVNPTTFSSLLASCVRLKSLTHGRQIHAHIRTNGLENNEFLRAKLAHMYTSCGSIEDAQRVFDECTSNNAYSWNALLRGSVVSGRKRYLDVLSTFSEMRSLAVNLNEYTFSTVLKSFAGASAFRQGLKAHALLVKYGFINSSMLRTGLIELYFKCGKIKLAHRVFEEIPERDIILWGAVIAGFAHNRMQREALNYARWMIS-EGIYPNSVILTTILPVIGEVWARKVGQEVHAYVVKTKSYSKQLSIQSGLIDMYCKCGDMESGRQVFYCSGERNAISWTALMSGYISNGRLEQALRSVVWMQQEGFKPDVVTVATVLPVCAQLRALNHGMEIHAYAVKNCFFPNVSIVTSLMIMYSKCGVLDYSLKLFNGLEARNVISWTAMIESYAESGCLPEAIGVFRSMQLSKHRPDSVVMARMLNICGELKAIKLGKEIHGQVLKKDFESIPSVSAEMVKMYGACGLMSNAKLVFDAVRVKGSMTWTAIIEAHGYNDLCEGAISLFHQMISDGFTPNHFTFKVVLSICRKAGLVDEACQIFSVMTRKYKVKVSEEHYCIMIELLNMSGRFEEAERFIQMKSLSS 2160 PF ++ SLPLHSKNP I++ IQ AR+NKL++AL ILDY++Q+GIPVN TTFS+LLA+CVR KSL HG+Q+H HIR NGLE +EFL KL H+YT+CGSIEDAQ+VFDE +S+N YSWNALLRG+V+SG++RY DV+STF+EMR V+LN Y+ S V KSFAGASA RQGLK HAL VK G +S L+T ++++YFKCGK+ LA RVF+EI ERDI+ WGA+IAG AHN+ Q EAL R MIS EGIYPNSVI+TTILPV+G+V A K+G+EVHA+V+K+K+Y +Q + SGLID YCKCGDM SGR+VFY S +RNAISWTALMSGY +NGR +QALRS+VWMQQEGFKPDVVT+ATVLPVCA+LRA+ G EIH YA+K + PNVS+VTSLM+MYSKCGV +Y +LF+ LE RNV +WTAMI+ Y +G L I VFRSM LSKHRPDSV M R+L +C ELKA+KLGKEIHG +LKK+FESIP VSA ++KMYG CG + +A FDAV VKGS+TWTAIIEA+G N A++ F QM S+GFTPN FTF VLSIC +AG DEAC+ F +M + YK++ SE+ Y ++IELLN GR EEA+R M S SS Sbjct: 58 PFRERDAFPSSLPLHSKNPHIIHRAIQNLARKNKLEDALTILDYLEQRGIPVNATTFSALLAACVRRKSLIHGKQVHVHIRINGLEKSEFLGTKLVHLYTACGSIEDAQKVFDESSSSNVYSWNALLRGTVISGKRRYKDVVSTFAEMREQGVDLNVYSLSNVFKSFAGASALRQGLKTHALAVKNGLFSSDFLKTSVVDMYFKCGKVGLARRVFDEIEERDIVAWGAMIAGLAHNKRQWEALGLFRMMISREGIYPNSVIITTILPVLGDVKALKLGKEVHAHVLKSKNYVEQPFVHSGLIDFYCKCGDMVSGRRVFYGSKQRNAISWTALMSGYAANGRFDQALRSIVWMQQEGFKPDVVTIATVLPVCAELRAVKQGKEIHCYALKKLYLPNVSLVTSLMVMYSKCGVPEYPARLFDRLEQRNVKAWTAMIDCYVVTGDLRAGIEVFRSMLLSKHRPDSVTMGRVLTVCSELKALKLGKEIHGHILKKEFESIPFVSARIIKMYGQCGDLKSANFSFDAVVVKGSLTWTAIIEAYGCNGRLRDAVNCFAQMRSEGFTPNAFTFTAVLSICSRAGFADEACRFFHLMHQTYKLQPSEDQYSMVIELLNRVGRVEEAQRLAIMSSSSS 686
BLAST of g.barbadense_cottongen_reftransV1_0097647 vs. ExPASy TrEMBL
Match: A0A0D3CZV5_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1) HSP 1 Score: 853.588 bits (2204), Expect = 0.000e+0 Identity = 404/629 (64.23%), Postives = 496/629 (78.86%), Query Frame = 1 Query: 277 PFFQKAPSSPSLPLHSKNPQAIYKDIQAFARQNKLKEALAILDYVDQQGIPVNPTTFSSLLASCVRLKSLTHGRQIHAHIRTNGLENNEFLRAKLAHMYTSCGSIEDAQRVFDECTSNNAYSWNALLRGSVVSGRKRYLDVLSTFSEMRSLAVNLNEYTFSTVLKSFAGASAFRQGLKAHALLVKYGFINSSMLRTGLIELYFKCGKIKLAHRVFEEIPERDIILWGAVIAGFAHNRMQREALNYARWMIS-EGIYPNSVILTTILPVIGEVWARKVGQEVHAYVVKTKSYSKQLSIQSGLIDMYCKCGDMESGRQVFYCSGERNAISWTALMSGYISNGRLEQALRSVVWMQQEGFKPDVVTVATVLPVCAQLRALNHGMEIHAYAVKNCFFPNVSIVTSLMIMYSKCGVLDYSLKLFNGLEARNVISWTAMIESYAESGCLPEAIGVFRSMQLSKHRPDSVVMARMLNICGELKAIKLGKEIHGQVLKKDFESIPSVSAEMVKMYGACGLMSNAKLVFDAVRVKGSMTWTAIIEAHGYNDLCEGAISLFHQMISDGFTPNHFTFKVVLSICRKAGLVDEACQIFSVMTRKYKVKVSEEHYCIMIELLNMSGRFEEAERFIQMKSLSS 2160 PF ++ SLPLHSKNP I++ IQ AR+NKL +AL ILDY++Q+GIPVN TTFS+LLA+CVR KSL HG+Q+H HIR NGLE +EFL KL H+YT+CGSIEDAQ+VFDE +S+N YSWNALLRG+V+SG++RY DV+STF+EMR V+LN Y+ S V KSFAGASA RQGLK HAL VK G +S L+T ++++YFKCGK+ LA RVF+EI ERDI+ WGA+IAG AHN+ Q EAL R MIS EGIYPNSVI+TTILPV+G+V K+G+EVHA+V+K+K+Y +Q + SGLID YCKCGDM SGR+VFY S +RNAISWTALMSGY +NGR +QALRS+VWMQQEGFKPDVVT+ATVLPVCA+LRA+ G EIH YA+K + PNVS+VTSLM+MYSKCGV +Y +LF+ LE RNV +WTAMI+ Y +G L I VFRSM LSKHRPDSV M R+L +C ELKA+KLGKEIHG +LKK+FESIP VSA ++KMYG CG + +A FD+V VKGS+TWTAIIEA+ N A++ F QM S+GFTPN FTF VLSIC +AG DEAC+ F +M + YK++ SE+ Y ++IELLN GR EEA+R M S SS Sbjct: 58 PFRERDAFPSSLPLHSKNPHIIHRAIQNLARKNKLDDALTILDYLEQRGIPVNATTFSALLAACVRRKSLIHGKQVHVHIRINGLEKSEFLGTKLVHLYTACGSIEDAQKVFDESSSSNVYSWNALLRGTVISGKRRYKDVVSTFAEMREQGVDLNVYSLSNVFKSFAGASALRQGLKTHALAVKNGLFSSDFLKTSVVDMYFKCGKVGLARRVFDEIEERDIVAWGAMIAGLAHNKRQWEALGLFRMMISREGIYPNSVIITTILPVLGDVKGLKLGKEVHAHVLKSKNYVEQPFVHSGLIDFYCKCGDMVSGRRVFYGSKQRNAISWTALMSGYAANGRFDQALRSIVWMQQEGFKPDVVTIATVLPVCAELRAVKQGKEIHCYALKKLYLPNVSLVTSLMVMYSKCGVPEYPARLFDRLEQRNVKAWTAMIDCYVVTGDLRAGIEVFRSMLLSKHRPDSVTMGRVLTVCSELKALKLGKEIHGHILKKEFESIPFVSARIIKMYGQCGDLKSANFSFDSVVVKGSLTWTAIIEAYECNGRLRDAVNCFEQMRSEGFTPNAFTFTAVLSICSRAGFADEACRFFHLMHQTYKLQPSEDQYSMVIELLNRVGRVEEAQRLAIMSSSSS 686
BLAST of g.barbadense_cottongen_reftransV1_0097647 vs. ExPASy TrEMBL
Match: A0A059DG41_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A01519 PE=4 SV=1) HSP 1 Score: 851.662 bits (2199), Expect = 0.000e+0 Identity = 396/581 (68.16%), Postives = 486/581 (83.65%), Query Frame = 1 Query: 409 VDQQGIPVNPTTFSSLLASCVRLKSLTHGRQIHAHIRTNGLENNEFLRAKLAHMYTSCGSIEDAQRVFDECTSNNAYSWNALLRGSVVSGRKRYLDVLSTFSEMRSLAVNLNEYTFSTVLKSFAGASAFRQGLKAHALLVKYGFINSSMLRTGLIELYFKCGKIKLAHRVFEEIPERDIILWGAVIAGFAHNRMQREALNYARWMISEGIYPNSVILTTILPVIGEVWARKVGQEVHAYVVKTKSYSKQLSIQSGLIDMYCKCGDMESGRQVFYCSGERNAISWTALMSGYISNGRLEQALRSVVWMQQEGFKPDVVTVATVLPVCAQLRALNHGMEIHAYAVKNCFFPNVSIVTSLMIMYSKCGVLDYSLKLFNGLEARNVISWTAMIESYAESGCLPEAIGVFRSMQLSKHRPDSVVMARMLNICGELKAIKLGKEIHGQVLKKDFESIPSVSAEMVKMYGACGLMSNAKLVFDAVRVKGSMTWTAIIEAHGYNDLCEGAISLFHQMISDGFTPNHFTFKVVLSICRKAGLVDEACQIFSVMTRKYKVKVSEEHYCIMIELLNMSGRFEEAERFIQMKS 2151 +DQQGIP+N TTFSSL+A+CVR KSL G+QIHAHIR NGL++NEFLR KL +MYTSCGSIEDA+ +FD C+S Y +NAL+RG+V+SGR+RYLDV+STFSEMR + V NEYTFS+++KSFAGASA RQGL+ HALL+K GFI+SS+LRT LI++YFKCGK+KLA +VFEEI ERD+++WGA+IAGFAHNR+Q EA+ Y + MI EGI PNSVILTTILPVIG + AR +GQEVHAYV+KT+SYSKQL IQSGLIDMYCKCGDM SGRQVFY S ERNA+SWTALMSGYISNGRLEQALRS+VWMQQEG +PD+VT+ATVLPVCAQL+ L HG EIHAYA KN F NVS+ TSL++MYSKCG+L+YS KLF G+ RNVISWTAMI+S AESG L EA+ VFR+MQLSKHRPDSV +AR+LN+C +L+ +KLGKE+HGQVLKK FE IP +S+E++KMYG+C + AK +F ++ VKGSMTWTAIIEA+G N + AI+LF QMIS+GFTPN FTF+ VL IC +AG D+A +IF+ M+ +K++ S E Y ++I LL GR EE+++ M + Sbjct: 1 MDQQGIPINVTTFSSLIATCVRSKSLAEGKQIHAHIRINGLDSNEFLRTKLVNMYTSCGSIEDAKMIFDTCSSKTVYPYNALIRGAVISGRRRYLDVISTFSEMREIGVECNEYTFSSMIKSFAGASALRQGLRTHALLIKNGFIDSSLLRTSLIDMYFKCGKVKLACQVFEEIDERDVVVWGAMIAGFAHNRLQMEAIEYTKIMIREGITPNSVILTTILPVIGVLQARLLGQEVHAYVLKTRSYSKQLFIQSGLIDMYCKCGDMGSGRQVFYGSPERNAVSWTALMSGYISNGRLEQALRSIVWMQQEGCRPDIVTIATVLPVCAQLKNLKHGKEIHAYAAKNGFVNNVSVTTSLIVMYSKCGILNYSFKLFEGMPQRNVISWTAMIDSCAESGFLYEALDVFRAMQLSKHRPDSVALARVLNVCAQLRDLKLGKEVHGQVLKKKFEMIPFISSEIMKMYGSCQSVLTAKSIFSSIPVKGSMTWTAIIEAYGINHMYRDAINLFDQMISEGFTPNEFTFRAVLHICNQAGFADDAYRIFNQMSVDHKMRASGESYSLVIGLLEREGRLEESQKLKWMST 581 HSP 2 Score: 157.147 bits (396), Expect = 3.372e-37 Identity = 102/348 (29.31%), Postives = 170/348 (48.85%), Query Frame = 1 Query: 352 IQAFARQNKLKEALAILDYVDQQGIPVNPTTFSSLLASCVRLKSLTHGRQIHAHI-RTNGLENNEFLRAKLAHMYTSCGSIEDAQRVFDECTSNNAYSWNALLRGSVVSGRKRYLDVLSTFSEMRSLAVNLNEYTFSTVLKSFAGASAFRQGLKAHALLVKYGFINSSMLRTGLIELYFKCGKIKLAHRVFEEIPERDIILWGAVIAGFAHNRMQREALNYARWMISEGIYPNSVILTTILPVIGEVWARKVGQEVHAYVVKTKSYSKQLSIQSGLIDMYCKCGDMESGRQVFYCSGERNAISWTALMSGYISNGRLEQALRSVVWMQQEGFKPDVVTVATVLPVCAQ 1392 I FA EA+ + ++GI N +++L L++ G+++HA++ +T F+++ L MY CG + ++VF NA SW AL+ G + +GR L + M+ + T +TVL A + G + HA K GF+N+ + T LI +Y KCG + + ++FE +P+R++I W A+I A + EAL+ R M P+SV L +L V ++ K+G+EVH V+K K + I S ++ MY C + + + +F + +++WTA++ Y N A+ M EGF P+ T VL +C Q Sbjct: 186 IAGFAHNRLQMEAIEYTKIMIREGITPNSVILTTILPVIGVLQARLLGQEVHAYVLKTRSYSKQLFIQSGLIDMYCKCGDMGSGRQVFYGSPERNAVSWTALMSGYISNGRLE--QALRSIVWMQQEGCRPDIVTIATVLPVCAQLKNLKHGKEIHAYAAKNGFVNNVSVTTSLIVMYSKCGILNYSFKLFEGMPQRNVISWTAMIDSCAESGFLYEALDVFRAMQLSKHRPDSVALARVLNVCAQLRDLKLGKEVHGQVLK-KKFEMIPFISSEIMKMYGSCQSVLTAKSIFSSIPVKGSMTWTAIIEAYGINHMYRDAINLFDQMISEGFTPNEFTFRAVLHICNQ 530
BLAST of g.barbadense_cottongen_reftransV1_0097647 vs. ExPASy TrEMBL
Match: A5BEF5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018576 PE=4 SV=1) HSP 1 Score: 805.053 bits (2078), Expect = 0.000e+0 Identity = 402/638 (63.01%), Postives = 480/638 (75.24%), Query Frame = 1 Query: 271 SLPFFQKAPSSPSLPLHSKNPQAIYKDIQAFARQNKLKEALAILDYVDQQGIPVNPTTFSSLLASCVRLKSLTHGRQIHAHIRTNGLENNEFLRAKLAHMYTSCGSIEDAQRVFDECTSN----NAYSWNALLRGSVVS-----GRKRYLDVLSTFSEMRSLAVNLNEYTFSTVLKSFAGASAFRQGLKAHALLVKYGFINSSMLRTGLIELYFKCGKIKLAHRVFEEIPERDIILWGAVIAGFAHNRMQREALNYARWMISEGIYPNSVILTTILPVIGEVWARKVGQEVHAYVVKTKSYSKQLSIQSGLIDMYCKCGDMESGRQVFYCSGERNAISWTALMSGYISNGRLEQALRSVVWMQQEGFKPDVVTVATVLPVCAQLRALNHGMEIHAYAVKNCFFPNVSIVTSLMIMYSKCGVLDYSLKLFNGLEARNVISWTAMIESYAESGCLPEAIGVFRSMQLSKHRPDSVVMARMLNICGELKAIKLGKEIHGQVLKKDFESIPSVSAEMVKMYGACGLMSNAKLVFDAVRVKGSMTWTAIIEAHGYNDLCEGAISLFHQMISDGFTPNHFTFKVVLSICRKAGLVDEACQIFSVMTRKYKVKVSEEHYCIMIELLNMSGRFEEAERFIQMKSLS 2157 +L F QK SLPL SKNP AIY D Q + + L ++ FS A + L H + HA + F R G +++A + D C N ++++LLR V S GR+ Y + LST+SEMR L V LN Y+FS ++KSFAGA+AFRQGLKAHALL+K G ++SS+LRT LI++YFKCGKIKLA +FEEI ERD+++WGA+IAGF HNR+QREAL Y RWM EGI PNSVI+TTILPVIGEV A K+G+EVHAYVVKTKSYSKQ+ IQS LIDMYCKCGDM SGRQVFY S ERNA+SWTALMSGY+SNGRL+QALRS+ WMQQEGF+PDVVTVATVLPVCA+LRAL G EIH+YAVKN F PNVSI TSLM+MYSKCG LDYS KLF+G++ARNVISWTAMI+SY E+GCL EA+GVFRSMQLSKHRPDSV MAR+L+ICGEL+ +KLGKEIHGQ+LKKDFESIP VSAE++KMYG G +S AKL F A+ KGSM WTAIIEA+GYNDL + AI+LFHQM SDGF PNH+TFK VLSIC +A L D+AC IF++M+R+Y++K S EHY +IELLN GR E+A+RFIQM+S S Sbjct: 48 NLTFSQKDAYPISLPLQSKNPHAIYSDNQTTPSRPTQTQFRTRLKSPKKK-------PFSEKDAFPMSLP--LHTKNPHAIFS----DIQRFARQ---------GKLKEALTILDYCDQQGIPVNPTTFSSLLRACVESKSLTHGRRHYREALSTYSEMRELGVELNVYSFSCMIKSFAGATAFRQGLKAHALLIKNGLVDSSILRTSLIDMYFKCGKIKLARLMFEEIVERDVVVWGAMIAGFGHNRLQREALEYLRWMRREGICPNSVIMTTILPVIGEVGAWKLGREVHAYVVKTKSYSKQVFIQSALIDMYCKCGDMASGRQVFYASTERNAVSWTALMSGYVSNGRLDQALRSIAWMQQEGFRPDVVTVATVLPVCAELRALRQGKEIHSYAVKNGFLPNVSIATSLMVMYSKCGNLDYSFKLFDGMDARNVISWTAMIDSYVENGCLHEAVGVFRSMQLSKHRPDSVAMARILSICGELRVLKLGKEIHGQILKKDFESIPFVSAEIIKMYGKFGAISKAKLAFKAIPAKGSMAWTAIIEAYGYNDLYQDAINLFHQMQSDGFIPNHYTFKAVLSICERAELADDACLIFNLMSRRYRIKASNEHYSSIIELLNRVGRTEDAQRFIQMRSAS 663 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0097647 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 25
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BLAST of g.barbadense_cottongen_reftransV1_0097647 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0097647 ID=g.barbadense_cottongen_reftransV1_0097647; Name=g.barbadense_cottongen_reftransV1_0097647; organism=Gossypium barbadense; type=contig; length=2334bpback to top |