g.barbadense_cottongen_reftransV1_0097514, g.barbadense_cottongen_reftransV1_0097514 (contig) Gossypium barbadense
Overview
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0097514 vs. ExPASy Swiss-Prot
Match: OEP80_ARATH (Outer envelope protein 80, chloroplastic OS=Arabidopsis thaliana GN=OEP80 PE=2 SV=1) HSP 1 Score: 180.644 bits (457), Expect = 9.360e-46 Identity = 100/256 (39.06%), Postives = 146/256 (57.03%), Query Frame = 2 Query: 341 TGSPLSLVIGSLCIKHPNLFGGSEKLDVSWDKGLYDSNILVAYRRPRPQWV------AQQCFVMQHSLSPEIGVHGIPVDNFSRSGSGGVNLSRFSVGLDLNEPASSKWSSTTSVKFENVRLLSDDDHSITRDLDGFPVTCSGNAHDSMVVLKQESQYAKANEHSFSRFTMQIEQGIPVLSKWLIFNRFKFVASKGIKLGPAFLLTSLTGGSIVGDMAPYQAFAIGGLGSVRGYGEGAVGSGRSCLVANTEVTFPL 1090 T PLS +IGS H NLFG ++KL+VS ++G DS + Y P W+ + ++Q+S +P VHG DN S + + R + G++ + P KW+ T + F++ + + I +D P+T SG HD ++ K ES Y + + + F +EQG+PVL +WL FNR A KGI +GPA L SL+GG +VG +P++AF IGG SVRGY EGAVGSGRS +V + E++FP+ Sbjct: 412 TSGPLSGLIGSFAYSHRNLFGRNQKLNVSLERGQIDSIFRINYTDP---WIEGDDKRTSRSIMVQNSRTPGNLVHGNQPDNSS------LTIGRVTAGVEYSRPFRPKWNGTAGLIFQHAGARDEQGNPIIKDFYSSPLTASGKPHDETMLAKLESIYTGSGDQGSTMFAFNMEQGLPVLPEWLCFNRVTGRARKGIHIGPARFLFSLSGGHVVGKFSPHEAFVIGGTNSVRGYEEGAVGSGRSYVVGSGELSFPV 658
BLAST of g.barbadense_cottongen_reftransV1_0097514 vs. ExPASy Swiss-Prot
Match: OEP80_ORYSJ (Outer envelope protein 80, chloroplastic OS=Oryza sativa subsp. japonica GN=OEP80 PE=3 SV=2) HSP 1 Score: 169.859 bits (429), Expect = 1.994e-42 Identity = 97/261 (37.16%), Postives = 144/261 (55.17%), Query Frame = 2 Query: 341 TGSPLSLVIGSLCIKHPNLFGGSEKLDVSWDKGLYDSNILVAYRRPRPQWV------AQQCFVMQHSLSPEIGVHGIPVDNFSRSGSGGVNLSRFSVGLDLNEPASSKWSSTTSVKFENVRLLSDDDHSITRDLDGFPVTCSGNAHDSMVVLKQESQYAKANEHSFSRFTMQIEQGIPVLSKWLIFNRFKFVASKGIKLGPAFLLTSLTGGSIVGDMAPYQAFAIGGLGSVRGYGEGAVGSGRSCLVANTEVTFPLVCNCF 1105 T PLS +IGS H N+FG ++KL++S ++G DS + Y P W+ + ++Q+S +P +HG G + + R + G++ + P KWS T + F++ D + I RD +T SGNA+D ++ K ES Y + + S + F IEQG+P+L +WL FNR +G ++GPA LL S +GG + G+ +P++AFAIGG SVRGY EGAVGSGRS V + EV+ C F Sbjct: 344 TNGPLSGLIGSFAYSHRNVFGRNKKLNLSLERGQIDSIFRLNYTDP---WIDGDNKRTSRTIMVQNSRTPGTLIHG-----GDHPDHGPITIGRVTAGIEYSRPFRPKWSGTLGLIFQHAGARDDKGNPIIRDFYNSQLTASGNAYDDTLLAKLESVYTDSGDRSSTMFVFNIEQGLPILPEWLSFNRVTARLRQGYEIGPARLLLSASGGHVEGNFSPHEAFAIGGTNSVRGYEEGAVGSGRSYAVGSGEVS----CRMF 592
BLAST of g.barbadense_cottongen_reftransV1_0097514 vs. ExPASy Swiss-Prot
Match: OEP80_ORYSI (Outer envelope protein 80, chloroplastic OS=Oryza sativa subsp. indica GN=OEP80 PE=3 SV=1) HSP 1 Score: 169.474 bits (428), Expect = 2.362e-42 Identity = 97/261 (37.16%), Postives = 144/261 (55.17%), Query Frame = 2 Query: 341 TGSPLSLVIGSLCIKHPNLFGGSEKLDVSWDKGLYDSNILVAYRRPRPQWV------AQQCFVMQHSLSPEIGVHGIPVDNFSRSGSGGVNLSRFSVGLDLNEPASSKWSSTTSVKFENVRLLSDDDHSITRDLDGFPVTCSGNAHDSMVVLKQESQYAKANEHSFSRFTMQIEQGIPVLSKWLIFNRFKFVASKGIKLGPAFLLTSLTGGSIVGDMAPYQAFAIGGLGSVRGYGEGAVGSGRSCLVANTEVTFPLVCNCF 1105 T PLS +IGS H N+FG ++KL++S ++G DS + Y P W+ + ++Q+S +P +HG G + + R + G++ + P KWS T + F++ D + I RD +T SGNA+D ++ K ES Y + + S + F IEQG+P+L +WL FNR +G ++GPA LL S +GG + G+ +P++AFAIGG SVRGY EGAVGSGRS V + EV+ C F Sbjct: 344 TNGPLSGLIGSFAYSHRNVFGRNKKLNLSLERGQIDSIFRLNYTDP---WIDGDNKRTSRTIMVQNSRTPGTLIHG-----GDHPDHGPITIGRVTAGIEYSRPFRPKWSGTLGLIFQHAGARDDKGNPIIRDFYNSQLTASGNAYDDTLLAKLESVYTDSGDRSSTMFVFNIEQGLPILPEWLSFNRVTARLRQGYEIGPARLLLSASGGHVEGNFSPHEAFAIGGTNSVRGYEEGAVGSGRSYAVGSGEVS----CRMF 592
BLAST of g.barbadense_cottongen_reftransV1_0097514 vs. ExPASy Swiss-Prot
Match: TC753_ARATH (Protein TOC75-3, chloroplastic OS=Arabidopsis thaliana GN=TOC75-3 PE=1 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 1.097e-9 Identity = 59/200 (29.50%), Postives = 87/200 (43.50%), Query Frame = 2 Query: 539 GVHGIPVDNFSRSGSGGVNLSRFSVGLDLNEPASSKWSSTTSVKFENVRLLSDDDHSITRDLDGFPVTCSGNAHDSMVVLKQESQYAKANEHSFS------RFTMQIEQGIPVLSKWLIFNRFKFVASKGIKLG----------PAFLLTSLTGGSIVGDMAPYQAFAIGGLGSVRGYGEGAVGSGRSCLVANTEVTFPL 1090 GV +NF+R S+F+ GL + E + SS + + RLL S DG P T SG D M L ++ + N + R Q++QG+ + SK+ FNR + +K I+L P L+ G VGD+ Y AF +GG SVRGY G +G+ R+ E+ P+ Sbjct: 564 GVKANITENFTRQ-------SKFTYGLVMEEITTRDESSHIAANGQ--RLLPSGGISA----DGPPTTLSGTGVDRMAFL--QANITRDNTKFVNGAVVGQRTVFQVDQGLGIGSKFPFFNRHQLTMTKFIQLREVEQGAGKSPPPVLVLHGHYGGCVGDLPSYDAFVLGGPYSVRGYNMGELGAARNIAEVGAEIRIPV 748
BLAST of g.barbadense_cottongen_reftransV1_0097514 vs. ExPASy Swiss-Prot
Match: TOC75_PEA (Protein TOC75, chloroplastic OS=Pisum sativum GN=TOC75 PE=1 SV=1) HSP 1 Score: 63.929 bits (154), Expect = 7.120e-9 Identity = 59/200 (29.50%), Postives = 87/200 (43.50%), Query Frame = 2 Query: 539 GVHGIPVDNFSRSGSGGVNLSRFSVGLDLNEPASSKWSSTTSVKFENVRLLSDDDHSITRDLDGFPVTCSGNAHDSMVVLKQESQYAKANEHSF------SRFTMQIEQGIPVLSKWLIFNRFKFVASKGIKL----------GPAFLLTSLTGGSIVGDMAPYQAFAIGGLGSVRGYGEGAVGSGRSCLVANTEVTFPL 1090 GV +NFSR S+F+ GL + E + S+ + R+L + S DG P T SG D M L ++ + N SR Q++QG+ V S + FNR + +K ++L P L+ G VGD+ Y AF +GG SVRGY G +G+ R+ L E+ P+ Sbjct: 555 GVKANITENFSRQ-------SKFTYGLVMEEIITRDESNHICSNGQ--RVLPNGAISA----DGPPTTLSGTGIDRMAFL--QANITRDNTRFVNGTIVGSRNMFQVDQGLGVGSNFPFFNRHQLTVTKFLQLMSVEEGAGKSPPPVLVLHGHYGGCVGDLPSYDAFTLGGPYSVRGYNMGEIGAARNILELAAEIRIPI 739
BLAST of g.barbadense_cottongen_reftransV1_0097514 vs. ExPASy Swiss-Prot
Match: TOC75_ORYSJ (Protein TOC75, chloroplastic OS=Oryza sativa subsp. japonica GN=TOC75 PE=2 SV=2) HSP 1 Score: 63.1586 bits (152), Expect = 1.224e-8 Identity = 46/145 (31.72%), Postives = 68/145 (46.90%), Query Frame = 2 Query: 722 LDGFPVTCSGNAHDSMVVLKQESQYAKANEHSFS------RFTMQIEQGIPVLSKWLIFNRFKFVASKGIKLG----------PAFLLTSLTGGSIVGDMAPYQAFAIGGLGSVRGYGEGAVGSGRSCLVANTEVTFPLVCNCFI 1108 +DG P T SG D M L ++ + N + R Q++QG+ + SK FNR + +K + L PA L+ VGD+ Y AF +GG SVRGYG G +G+ R+ L +E+ P V N ++ Sbjct: 611 MDGPPTTLSGTGIDRMAFL--QANITRDNTEFVNGAVIGDRCIFQLDQGLGIGSKNPFFNRHQLTLTKFVNLNKQEKGAGKPLPAVLVLHGHYAGCVGDLPSYDAFTLGGPYSVRGYGMGELGASRNVLEVASELRIP-VRNTYV 752
BLAST of g.barbadense_cottongen_reftransV1_0097514 vs. ExPASy Swiss-Prot
Match: TC754_ARATH (Protein TOC75-4, chloroplastic OS=Arabidopsis thaliana GN=TOC75-4 PE=2 SV=1) HSP 1 Score: 56.225 bits (134), Expect = 9.071e-7 Identity = 46/184 (25.00%), Postives = 83/184 (45.11%), Query Frame = 2 Query: 623 LNEPASSKWSSTTSVKFENVRLLSDDDHSITRD-----------LDGFPVTCSGNAHDSMVVLKQESQYAKANEHSFS------RFTMQIEQGIPVLSKWLIFNRFK-----FVASKGIKLG------PAFLLTSLTGGSIVGDMAPYQAFAIGGLGSVRGYGEGAVGSGRSCLVANTEVTFPL 1090 + E + + T V FE + + D++ I+ + ++G P T SG D + L ++ + N + + Q++QG+ + + + +FNR + F+ K ++ G P +L GG I GD+ Y FA+GG SVRGY G +G+ ++ L E+ P+ Sbjct: 147 ITENLTRQRELTYGVMFEEI-ITRDENRRISENGLLLSPDGGISINGPPTTLSGTGIDHIATL--QANITRDNTKLVNGAVVGEKNIFQVDQGLGIGNNFPLFNRHQLSLTSFIQLKQVEEGSDKPQPPVLVLHGRYGGCI-GDLPSYDVFALGGPNSVRGYSMGELGAAKNILELGAEIRIPV 326
BLAST of g.barbadense_cottongen_reftransV1_0097514 vs. ExPASy TrEMBL
Match: B9GHL6_POPTR (Chloroplast outer membrane family protein OS=Populus trichocarpa GN=POPTR_0001s22300g PE=4 SV=2) HSP 1 Score: 500.36 bits (1287), Expect = 1.890e-164 Identity = 232/285 (81.40%), Postives = 268/285 (94.04%), Query Frame = 2 Query: 236 MGAQKSIHAGKAKIDVNVDFTHKICASMMLPSLRNTGSPLSLVIGSLCIKHPNLFGGSEKLDVSWDKGLYDSNILVAYRRPRPQWVAQQCFVMQHSLSPEIGVHGIPVDNFSRSGSGGVNLSRFSVGLDLNEPASSKWSSTTSVKFENVRLLSDDDHSITRDLDGFPVTCSGNAHDSMVVLKQESQYAKANEHSFSRFTMQIEQGIPVLSKWLIFNRFKFVASKGIKLGPAFLLTSLTGGSIVGDMAPYQAFAIGGLGSVRGYGEGAVGSGRSCLVANTEVTFPL 1090 MGAQKS+HAGKAKID NVDFTHK+CA++ LPSLR+TGSPLSL+IGSLCIKHPNLFGGSEKLDVSWDKGLYDSN+++A+RRPRP+W++Q+CFV+QHS SPEIGVHG P+DNFSRSGSGGVNLSR SVGLD NEPA+S WSSTTS+KFE+V++++D SITRD+DGFP+T SG+ HD+MVVLKQESQYAKAN+ SF +F MQIEQGIP+LSKWLIFN+FKF+A+KG+KLGPAFLL SL GGSIVGDMAPYQAFAIGGLGSVRGYGEGAVGSGRSCLVAN+E+TFPL Sbjct: 1 MGAQKSVHAGKAKIDANVDFTHKLCAALRLPSLRSTGSPLSLIIGSLCIKHPNLFGGSEKLDVSWDKGLYDSNVIIAFRRPRPEWLSQKCFVIQHSFSPEIGVHGTPIDNFSRSGSGGVNLSRISVGLDRNEPATSDWSSTTSIKFEHVQIVNDSWRSITRDIDGFPLTRSGSPHDNMVVLKQESQYAKANDRSFYQFRMQIEQGIPILSKWLIFNKFKFIATKGVKLGPAFLLASLAGGSIVGDMAPYQAFAIGGLGSVRGYGEGAVGSGRSCLVANSELTFPL 285 HSP 2 Score: 95.1301 bits (235), Expect = 1.610e-17 Identity = 41/52 (78.85%), Postives = 48/52 (92.31%), Query Frame = 2 Query: 2162 VSGNPAMRQGKPGSGVGFGYGLRFKSPVGHFQVDYAINAFQQKTLYFGVTNL 2317 V GNPAMRQGKPGSGVG GYGLRFKSP+GHF V++AIN FQQ+T+YFG++NL Sbjct: 307 VPGNPAMRQGKPGSGVGLGYGLRFKSPIGHFMVNHAINDFQQRTVYFGISNL 358
BLAST of g.barbadense_cottongen_reftransV1_0097514 vs. ExPASy TrEMBL
Match: D7LMI0_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_484837 PE=4 SV=1) HSP 1 Score: 499.59 bits (1285), Expect = 5.212e-164 Identity = 237/288 (82.29%), Postives = 262/288 (90.97%), Query Frame = 2 Query: 236 MGAQKSIHAGKAKIDVNVDFTHKICASMMLPSLRNTGSPLSLVIGS---LCIKHPNLFGGSEKLDVSWDKGLYDSNILVAYRRPRPQWVAQQCFVMQHSLSPEIGVHGIPVDNFSRSGSGGVNLSRFSVGLDLNEPASSKWSSTTSVKFENVRLLSDDDHSITRDLDGFPVTCSGNAHDSMVVLKQESQYAKANEHSFSRFTMQIEQGIPVLSKWLIFNRFKFVASKGIKLGPAFLLTSLTGGSIVGDMAPYQAFAIGGLGSVRGYGEGAVGSGRSCLVANTEVTFPL 1090 MGAQKSIHAG+AKIDVNVDFTHK+C S+M P+ R+T SPLSLVIG LCIKHPNLFGGSEKLDVSWDKGLYDSN+LVA+RRPRP+W QQCF +QHSLSPEIGVHG PVDNFSRSGSGGVNLS+ +VGLDL+EPASSKWSSTTSVKFE+VR ++DD +ITRDLDGFP+TCSGN HDSMVVLKQES++AKA + S F+MQIEQGIPV+SKWLIFNRFKFVASKG++ GPAFLL SLTGGSIVGDMAPYQAFAIGGLGSVRGYGEGAVGSGRSCLVANTE+ PL Sbjct: 1 MGAQKSIHAGRAKIDVNVDFTHKLCTSLMFPAFRDTSSPLSLVIGRQVFLCIKHPNLFGGSEKLDVSWDKGLYDSNVLVAFRRPRPEWRPQQCFFIQHSLSPEIGVHGTPVDNFSRSGSGGVNLSKLAVGLDLSEPASSKWSSTTSVKFEHVRPINDDGRAITRDLDGFPITCSGNTHDSMVVLKQESRFAKATDQGLSHFSMQIEQGIPVVSKWLIFNRFKFVASKGVRFGPAFLLASLTGGSIVGDMAPYQAFAIGGLGSVRGYGEGAVGSGRSCLVANTELAVPL 288 HSP 2 Score: 82.4185 bits (202), Expect = 2.366e-13 Identity = 46/54 (85.19%), Postives = 49/54 (90.74%), Query Frame = 2 Query: 2162 VSGNPAMRQGKPGSGVGFGYGLRFKSPVGHFQVDYAINAFQQKTLYFGVTNLAS 2323 V GNP+MRQGKPG G GFGYGLRFKSP+GH QVDYA+NAF QKTLYFGVTNLAS Sbjct: 310 VPGNPSMRQGKPGYGYGFGYGLRFKSPLGHLQVDYAMNAFNQKTLYFGVTNLAS 363
BLAST of g.barbadense_cottongen_reftransV1_0097514 vs. ExPASy TrEMBL
Match: I3S6C8_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1) HSP 1 Score: 498.819 bits (1283), Expect = 7.617e-164 Identity = 234/286 (81.82%), Postives = 264/286 (92.31%), Query Frame = 2 Query: 236 MGAQKSIHAGKAKIDVNVDFTHKICASMMLPSLRNTGSPLSLVIGSLCIKHPNLFGGSEKLDVSWDKGLYDSNILVAYRRPRPQWVAQQCFVMQHSLSPEIGVHGIPVDNFSRSGSGGVNLSRFSVGLDLNEPASSKWSSTTSVKFENVRLLSDDDHSITRDLDGFPVTCSGNAHDSMVVLKQESQYAKANEHSFSRFTMQIEQGIPVLSKWLIFNRFKFVASKGIKLGPAFLLTSLTGGSIVGDMAPYQAFAIGGLGSVRGYGEGAVGSGRSCLVANTEVTFPLV 1093 MGAQKSIHAGKAKIDVNVDFTHK+CAS+M P+LR+ +PL LVIGSLCIKHPNLFGGSEKLDVSWDKGLYDSNILVAYRRPRP+W+AQQ FV+QHSLSPEI VHGIP++NFSRSGSGGVNLS+ SVGLDL EP S+KWSSTT +KFE+VR L+DD +I+RD DGFP+TCSG+ HDSMVVLKQES++AKAN+ SF F +QIEQGIPVLSKW++FNRFKFVASKG+KLGPAFLLT LTGGSIVGDMAPYQAF++GGLGSVRGYGEGAVGSGRSCLVAN+E+T PL Sbjct: 1 MGAQKSIHAGKAKIDVNVDFTHKLCASLMFPTLRSYENPLRLVIGSLCIKHPNLFGGSEKLDVSWDKGLYDSNILVAYRRPRPEWLAQQSFVLQHSLSPEIAVHGIPINNFSRSGSGGVNLSKLSVGLDLKEPMSTKWSSTTGIKFEHVRPLNDDGRAISRDYDGFPLTCSGSTHDSMVVLKQESRFAKANDRSFFHFNLQIEQGIPVLSKWILFNRFKFVASKGVKLGPAFLLTRLTGGSIVGDMAPYQAFSVGGLGSVRGYGEGAVGSGRSCLVANSELTLPLT 286 HSP 2 Score: 101.293 bits (251), Expect = 1.739e-19 Identity = 46/54 (85.19%), Postives = 50/54 (92.59%), Query Frame = 2 Query: 2162 VSGNPAMRQGKPGSGVGFGYGLRFKSPVGHFQVDYAINAFQQKTLYFGVTNLAS 2323 V GNPA+RQGKPGSGVG GYGLRFKS GHFQVDYA+NAFQQKTLYFG++NLAS Sbjct: 307 VPGNPALRQGKPGSGVGLGYGLRFKSQFGHFQVDYAVNAFQQKTLYFGLSNLAS 360
BLAST of g.barbadense_cottongen_reftransV1_0097514 vs. ExPASy TrEMBL
Match: B9HQ67_POPTR (Chloroplast outer membrane family protein OS=Populus trichocarpa GN=POPTR_0009s02220g PE=4 SV=1) HSP 1 Score: 496.893 bits (1278), Expect = 4.294e-163 Identity = 241/285 (84.56%), Postives = 268/285 (94.04%), Query Frame = 2 Query: 236 MGAQKSIHAGKAKIDVNVDFTHKICASMMLPSLRNTGSPLSLVIGSLCIKHPNLFGGSEKLDVSWDKGLYDSNILVAYRRPRPQWVAQQCFVMQHSLSPEIGVHGIPVDNFSRSGSGGVNLSRFSVGLDLNEPASSKWSSTTSVKFENVRLLSDDDHSITRDLDGFPVTCSGNAHDSMVVLKQESQYAKANEHSFSRFTMQIEQGIPVLSKWLIFNRFKFVASKGIKLGPAFLLTSLTGGSIVGDMAPYQAFAIGGLGSVRGYGEGAVGSGRSCLVANTEVTFPL 1090 MGAQKSIHAGKAKIDVNVDFTHK+CAS+MLPSLRNTGSPLSL+IGSLCIKHPNLFGGSEKLDVSWDKGL DSN+ + YRRPRP+W+ Q+CFV+QHS SPEIGVHG P+DNFSRSGSG VNLSR SVGLD NEPASS WSS+TS+KFE+V+L++DD SITRD+DGFPVTCSG+ HDSM+VLKQESQ AKAN+HSFSRF+MQIEQGIP+LSKWLIFN+FKF A+KG+KLGPAFLL SLTGGSIVGDMAPYQAFAIGGLGSVRGYGEGAVGSGRSCLV N+E+TFPL Sbjct: 1 MGAQKSIHAGKAKIDVNVDFTHKLCASLMLPSLRNTGSPLSLIIGSLCIKHPNLFGGSEKLDVSWDKGLSDSNVSITYRRPRPEWLCQKCFVIQHSFSPEIGVHGTPIDNFSRSGSGDVNLSRLSVGLDRNEPASSDWSSSTSIKFEHVQLVNDDGRSITRDIDGFPVTCSGSPHDSMLVLKQESQCAKANDHSFSRFSMQIEQGIPILSKWLIFNKFKFTATKGVKLGPAFLLASLTGGSIVGDMAPYQAFAIGGLGSVRGYGEGAVGSGRSCLVGNSELTFPL 285 HSP 2 Score: 100.138 bits (248), Expect = 4.596e-19 Identity = 45/52 (86.54%), Postives = 49/52 (94.23%), Query Frame = 2 Query: 2162 VSGNPAMRQGKPGSGVGFGYGLRFKSPVGHFQVDYAINAFQQKTLYFGVTNL 2317 V GNPAMRQGKPGSGVG GYGLRFKSP GHFQVDYAIN+FQQKT+YFG++NL Sbjct: 307 VPGNPAMRQGKPGSGVGLGYGLRFKSPAGHFQVDYAINSFQQKTVYFGISNL 358
BLAST of g.barbadense_cottongen_reftransV1_0097514 vs. ExPASy TrEMBL
Match: A0A059AA52_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J00580 PE=4 SV=1) HSP 1 Score: 494.967 bits (1273), Expect = 2.488e-162 Identity = 233/285 (81.75%), Postives = 262/285 (91.93%), Query Frame = 2 Query: 236 MGAQKSIHAGKAKIDVNVDFTHKICASMMLPSLRNTGSPLSLVIGSLCIKHPNLFGGSEKLDVSWDKGLYDSNILVAYRRPRPQWVAQQCFVMQHSLSPEIGVHGIPVDNFSRSGSGGVNLSRFSVGLDLNEPASSKWSSTTSVKFENVRLLSDDDHSITRDLDGFPVTCSGNAHDSMVVLKQESQYAKANEHSFSRFTMQIEQGIPVLSKWLIFNRFKFVASKGIKLGPAFLLTSLTGGSIVGDMAPYQAFAIGGLGSVRGYGEGAVGSGRSCLVANTEVTFPL 1090 MGAQKSIHAGKAKIDVNVD +HK+C+S+MLPSLR + SPLS +IGSLCIKHPNLFGGSEKLDVSWDKGLYDSN L+AYRRPRP+W++QQ FV+QHS+SPEIGVHG P DNFS+SGSGGVNLS+FSVGLDL EPA+S WSSTTS++F++VR L+D+ SI+RDLDG PVTCSGN HDSMVVLKQESQYAKANE SF R QIEQGIP+LSKW+IFN+ KFVASKG+KLGPAFLLTSLTGGSIVGDMAPYQAFAIGGL SVRGYGEGA+G+GRSCLVAN E+TFPL Sbjct: 1 MGAQKSIHAGKAKIDVNVDLSHKLCSSLMLPSLRGSQSPLSFIIGSLCIKHPNLFGGSEKLDVSWDKGLYDSNALIAYRRPRPEWLSQQSFVIQHSVSPEIGVHGTPTDNFSQSGSGGVNLSQFSVGLDLTEPANSNWSSTTSIRFKHVRPLNDEGRSISRDLDGLPVTCSGNPHDSMVVLKQESQYAKANEDSFFRIRFQIEQGIPLLSKWIIFNKLKFVASKGVKLGPAFLLTSLTGGSIVGDMAPYQAFAIGGLSSVRGYGEGAIGAGRSCLVANNELTFPL 285 HSP 2 Score: 95.5153 bits (236), Expect = 1.242e-17 Identity = 41/54 (75.93%), Postives = 48/54 (88.89%), Query Frame = 2 Query: 2162 VSGNPAMRQGKPGSGVGFGYGLRFKSPVGHFQVDYAINAFQQKTLYFGVTNLAS 2323 V GNP++RQGKPGSG+G GYGLRFKS GHFQ+DYAINAF QKT+YFG++NL S Sbjct: 307 VPGNPSLRQGKPGSGIGLGYGLRFKSQFGHFQIDYAINAFHQKTVYFGISNLTS 360 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0097514 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 7
BLAST of g.barbadense_cottongen_reftransV1_0097514 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0097514 ID=g.barbadense_cottongen_reftransV1_0097514; Name=g.barbadense_cottongen_reftransV1_0097514; organism=Gossypium barbadense; type=contig; length=3128bpback to top Annotated Terms
The
following terms have been associated with
this contig:
|