g.barbadense_cottongen_reftransV1_0097480, g.barbadense_cottongen_reftransV1_0097480 (contig) Gossypium barbadense

Overview


Name	g.barbadense_cottongen_reftransV1_0097480
Unique Name	g.barbadense_cottongen_reftransV1_0097480
Type	contig
Organism	Gossypium barbadense (Sea Island cotton)
Sequence length	4502

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Dt03	chromosome	g.barbadense_cottongen_reftransV1_0097480:1..4502 . Dt03:38889064..38896614 -

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium barbadense CottonGen RefTrans V1	2016-11-01
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot	2016-11-01
InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1	2016-11-02
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL	2016-11-02

Homology

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097480 vs. ExPASy Swiss-Prot
Match: FBL91_ARATH (F-box/LRR-repeat protein At5g63520 OS=Arabidopsis thaliana GN=At5g63520 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 4.493e-32
Identity = 55/112 (49.11%), Postives = 67/112 (59.82%), Query Frame = -1

Query: 4092 SVPLLKPSMANKNRSSPSSATPKLM-EASGFSLMNEDLLRNILSRLPATSFASAATVSKTWNAACCHILSRPKFSSAISLKPLPLVALQEVFDKVMSEPIRPHFAIASVGPG 4424
             V L K  M  K +S  S      M +    + MNEDLL NIL RLPA SFA A+ V++ W++ C  ILSRPK  SA S  P  L A +EV DKV+SEPIRP F IA++  G
Sbjct:    3 EVSLTKKEMTTKGKSENSKKMKTDMADMVPIAAMNEDLLHNILLRLPAKSFAFASCVNRFWSSVCNRILSRPKMISAFSRNPDQLRAGEEVLDKVLSEPIRPQFVIANITCG 114

HSP 2 Score: 65.855 bits (159), Expect = 4.493e-32
Identity = 44/140 (31.43%), Postives = 68/140 (48.57%), Query Frame = -3

Query: 3559 MVEKVRSRTPIIVSSVKGILGRDALSHEFREACSXXXXXXXXXXXXXYHCDA*IFMFLFLNSGFIKCQVKWIDGNIDEVPVNTGIVLTVGFVPGLKVDVIPLLRQRKAPQGSMTDKFVQDIKSYTSSMSGCTSPQAIIMI 3978
            + E+V SR PIIVS V GILG+        EAC+                           +G ++      D   D    N  I+LT+G++PG+KVD+IP+++ +      M DKFV DI++Y S +SG  +  A +++
Sbjct:  123 ITERVGSRVPIIVSVVTGILGK--------EACND-------------------------KAGEVRLHSTSDDELFD--VANFAILLTIGYLPGMKVDIIPVIQAKGESGAEMEDKFVMDIRNYMSMVSGHAAAPACLIL 227

HSP 3 Score: 107.842 bits (268), Expect = 1.048e-22
Identity = 64/147 (43.54%), Postives = 81/147 (55.10%), Query Frame = -2

Query:  299 NRGDSEYLYVDGVGIRTGDYFQFYHSDPKTALSSSRNVSSTXXXXXXXXXXXXXXXXSTIINAVDKKEAFGGFIFSCLGRGESFFGQLNVDSSPFLDNFPRVPVAGTFCGGEIGRGCTSLTANGDEGGSARCHLHVYSTVYLVMSYT 739
            N  D + L VDG GI+TGD FQ Y  D K A ++  +VS+ LR                + +  +K E  GGF F    RG+SFFG  N DSSPFL+NFP +P  G FC GEIGR          +  S +  LHVYS+VYL++SYT
Sbjct:  397 NGSDDQDLLVDGAGIKTGDQFQVYLPDLKVAEAALNDVSAQLR---------------NLKSKPNKPEVVGGFAFVGSCRGDSFFGCPNADSSPFLENFPELPFGGIFCDGEIGRSLILEEGEEKKEVSIQRFLHVYSSVYLIVSYT 528

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097480 vs. ExPASy TrEMBL
Match: A0A0D2QJG2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G120100 PE=4 SV=1)

HSP 1 Score: 270.781 bits (691), Expect = 2.814e-76
Identity = 148/149 (99.33%), Postives = 148/149 (99.33%), Query Frame = -2

Query:  287 GDSEYLYVDGVGIRTGDYFQFYHSDPKTALSSSRNVSSTXXXXXXXXXXXXXXXXSTIINAVDKKEAFGGFIFSCLGRGESFFGQLNVDSSPFLDNFPRVPVAGTFCGGEIGRGCTSLTANGDEGGSARCHLHVYSTVYLVMSYTPPEH 733
            GDSEYLYVDGVGIRTGDYFQFYHSDPKTALSSSRNVSSTLRKLKLDWDSKSSLSKSTIINAVDKKEAFGGFIFSCLGRGESFFGQLNVDSSPFLDNFPRVPVAGTFCGGEIGRGCTSLTANGDEGGSARCHLHVYSTVYLVM YTPPEH
Sbjct:  253 GDSEYLYVDGVGIRTGDYFQFYHSDPKTALSSSRNVSSTLRKLKLDWDSKSSLSKSTIINAVDKKEAFGGFIFSCLGRGESFFGQLNVDSSPFLDNFPRVPVAGTFCGGEIGRGCTSLTANGDEGGSARCHLHVYSTVYLVMLYTPPEH 401

HSP 2 Score: 174.481 bits (441), Expect = 4.408e-43
Identity = 84/85 (98.82%), Postives = 84/85 (98.82%), Query Frame = -3

Query: 3559 MFLFLNSGFIKCQVKWIDGNIDEVPVNTGIVLTVGFVPGLKVDVIPLLRQRKAPQGSMTDKFVQDIKSYTSSMSGCTSPQAIIMI 3813
            MFLFLNSGFIKCQVKWIDGNIDEVPVNTGIVLTVGFVPGLKVDVIPLLRQRKAPQGSM DKFVQDIKSYTSSMSGCTSPQAIIMI
Sbjct:    1 MFLFLNSGFIKCQVKWIDGNIDEVPVNTGIVLTVGFVPGLKVDVIPLLRQRKAPQGSMIDKFVQDIKSYTSSMSGCTSPQAIIMI 85

HSP 3 Score: 133.265 bits (334), Expect = 2.976e-29
Identity = 65/76 (85.53%), Postives = 67/76 (88.16%), Query Frame = -2

Query: 1955 KLSGIGNIEFHFALSKGVSAIGPRLKAASVRVQDSYTVTWLTARREGQQEILDGQQMLEDIDNEV---CQCASVYI 2173
            K  GIGNIEFHFALSKGVSAIGPRLKAASVRVQDSYTVTWLTARREGQQEILDGQQMLEDIDNE+     C  +YI
Sbjct:  149 KARGIGNIEFHFALSKGVSAIGPRLKAASVRVQDSYTVTWLTARREGQQEILDGQQMLEDIDNEMENNMDCVDLYI 224

HSP 4 Score: 104.375 bits (259), Expect = 4.079e-20
Identity = 50/51 (98.04%), Postives = 50/51 (98.04%), Query Frame = -1

Query: 2709 AMSMETIIVGDERGQFVYRSSDVSRNVSTNKKHSPDAVALVFARDRNKARG 2861
            AMSMETIIVGDERGQFVYRSSDVSRNV TNKKHSPDAVALVFARDRNKARG
Sbjct:  102 AMSMETIIVGDERGQFVYRSSDVSRNVGTNKKHSPDAVALVFARDRNKARG 152

HSP 5 Score: 90.1225 bits (222), Expect = 1.907e-15
Identity = 39/47 (82.98%), Postives = 44/47 (93.62%), Query Frame = -2

Query: 1577 QMENNMDCVDLYIGVTRRRNCSVGSDKPRMMTTLALHGIEG*DMKHF 1717
            +MENNMDCVDLYIGVTRRRNCSVGSDKP+MMTTLALHG+EG D ++ 
Sbjct:  212 EMENNMDCVDLYIGVTRRRNCSVGSDKPKMMTTLALHGVEGGDSEYL 258

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097480 vs. ExPASy TrEMBL
Match: A0A061FZ19_THECC (F-box family protein, putative isoform 1 OS=Theobroma cacao GN=TCM_014665 PE=4 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 6.728e-74
Identity = 84/113 (74.34%), Postives = 90/113 (79.65%), Query Frame = -1

Query: 4062 MANKNRSSPSSATPKLMEASGFSLMNEDLLRNILSRLPATSFASAATVSKTWNAACCHILSRPKFSSAISLKPLPLVALQEVFDKVMSEPIRPHFAIASVGPGFEIKDVLQFV 4400
            M NK RSS S +T    E+ GF LMN DLL+NILSRLPA SFASAA VSK WNAAC  +LSRPK SSAISL P P VALQEVF KVMSEPIRPHFA+ASVGPGF  KDVLQF+
Sbjct:    1 MENKKRSSASPSTTNKKESKGFCLMNHDLLQNILSRLPAASFASAACVSKAWNAACNRVLSRPKLSSAISLNPSPRVALQEVFGKVMSEPIRPHFAMASVGPGFHFKDVLQFM 113

HSP 2 Score: 135.961 bits (341), Expect = 6.728e-74
Identity = 81/158 (51.27%), Postives = 90/158 (56.96%), Query Frame = -3

Query: 3559 MVEKVRSRTPIIVSSVKGILGRDALSHEFREACSXXXXXXXXXXXXXYHCDA*IFMFLFLNSGFIKCQVKWIDGNID-EVPVNTGIVLTVGFVPGLKVDVIPLLRQRK-----------------APQGSMTDKFVQDIKSYTSSMSGCTSPQAIIMI 3978
            MVEK+ SRTPII+SSV GI GRDAL+HEFRE                                     VKW +GN+D EV   TGIVL VG+VPGLKV+ IPLL+Q+K                  PQGSM DKFV DIKSYTSSMSGCTSP AIIMI
Sbjct:  113 MVEKLGSRTPIILSSVSGIFGRDALTHEFRE-------------------------------------VKWTNGNVDDEVSTYTGIVLNVGYVPGLKVEAIPLLQQKKFGFSKRKLTWRTLLICQTPQGSMIDKFVMDIKSYTSSMSGCTSPLAIIMI 233

HSP 3 Score: 26.5646 bits (57), Expect = 6.728e-74
Identity = 10/17 (58.82%), Postives = 14/17 (82.35%), Query Frame = -1

Query: 3426 LIL*DGSVDQKPILEKL 3476
            +++ D  VDQKPI+EKL
Sbjct:  231 IMIGDADVDQKPIIEKL 247

HSP 4 Score: 206.068 bits (523), Expect = 2.256e-52
Identity = 120/157 (76.43%), Postives = 127/157 (80.89%), Query Frame = -2

Query:  290 GDSEYLYVDGVGIRTGDYFQFYHSDPKTALSSSRNVSSTXXXXXXXXXXXXXXXXSTIINAVDKKEAFGGFIFSCLGRGESFFGQ--------LNVDSSPFLDNFPRVPVAGTFCGGEIGRGCTSLTAN-GDEGGSARCHLHVYSTVYLVMSYTPPE 733
            GD EYLYVDGVGIRTGDYFQFY SDPKTAL S RNVSSTLR LKL+WD+KS+ S S  INA DKKE FGGFIFSC GRG+SFF          LNVDSSPFL+NFP VP+AG FCGGEIGRG TSLTA+ G E GS RCHLHVYSTVYLVMSYT PE
Sbjct:  416 GDEEYLYVDGVGIRTGDYFQFYLSDPKTALPSCRNVSSTLRNLKLEWDTKSAHSTSAGINATDKKEIFGGFIFSCCGRGDSFFRHLNVDRSPFLNVDSSPFLENFPGVPLAGIFCGGEIGRGYTSLTAHGGQEEGSVRCHLHVYSTVYLVMSYTTPE 572

HSP 5 Score: 101.679 bits (252), Expect = 1.108e-18
Identity = 45/64 (70.31%), Postives = 57/64 (89.06%), Query Frame = -2

Query: 1982 KLSGIGNIEFHFALSKGVSAIGPRLKAASVRVQDSYTVTWLTARREGQQEILDGQQMLEDIDNE 2173
            K  G+G+IEFHFALS GV+AIGPR KAASV+V++S +VTWLTA+REGQQE+LDGQ +L+ I+NE
Sbjct:  297 KAHGVGDIEFHFALSNGVTAIGPRFKAASVKVRNSESVTWLTAKREGQQEVLDGQHILDHINNE 360

HSP 6 Score: 90.1225 bits (222), Expect = 4.795e-15
Identity = 43/51 (84.31%), Postives = 47/51 (92.16%), Query Frame = -1

Query: 2709 AMSMETIIVGDERGQFVYRSSDVSRNVSTNKKHSPDAVALVFARDRNKARG 2861
            AMSMETIIVGDERGQFVY+S DVSRNVS++ K SPDAVALVFARDR+KA G
Sbjct:  250 AMSMETIIVGDERGQFVYKSGDVSRNVSSSLKCSPDAVALVFARDRDKAHG 300

HSP 7 Score: 71.2478 bits (173), Expect = 4.187e-9
Identity = 32/46 (69.57%), Postives = 39/46 (84.78%), Query Frame = -2

Query: 1577 MENNMDCVDLYIGVTRRRNCSVGSDKPRMMTTLALHGIEG*DMKHF 1714
            MEN+ + VDLYIGVTR RNCSVGSDKPR+MT+LALHG+ G D ++ 
Sbjct:  376 MENHTEYVDLYIGVTRLRNCSVGSDKPRLMTSLALHGVVGGDEEYL 421

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097480 vs. ExPASy TrEMBL
Match: A0A0B0MUP5_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_27802 PE=4 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 6.191e-69
Identity = 146/149 (97.99%), Postives = 147/149 (98.66%), Query Frame = -2

Query:  287 GDSEYLYVDGVGIRTGDYFQFYHSDPKTALSSSRNVSSTXXXXXXXXXXXXXXXXSTIINAVDKKEAFGGFIFSCLGRGESFFGQLNVDSSPFLDNFPRVPVAGTFCGGEIGRGCTSLTANGDEGGSARCHLHVYSTVYLVMSYTPPEH 733
            GDSEYLYVDGVGIRTGDYFQFYHSDPKTALSSSR+VSSTLRKLKLDWDSKSSLSKSTIINAVDKKEAFGGFIFSCLGRGESFFGQLNVDSSPFLDNFP VPVAGTFCGGEIGRGCTSLTANGDEGGSARCHLH YSTVYLVMSYTPPEH
Sbjct:  353 GDSEYLYVDGVGIRTGDYFQFYHSDPKTALSSSRSVSSTLRKLKLDWDSKSSLSKSTIINAVDKKEAFGGFIFSCLGRGESFFGQLNVDSSPFLDNFPGVPVAGTFCGGEIGRGCTSLTANGDEGGSARCHLHAYSTVYLVMSYTPPEH 501

HSP 2 Score: 221.861 bits (564), Expect = 3.003e-58
Identity = 107/113 (94.69%), Postives = 109/113 (96.46%), Query Frame = -1

Query: 4062 MANKNRSSPSSATPKLMEASGFSLMNEDLLRNILSRLPATSFASAATVSKTWNAACCHILSRPKFSSAISLKPLPLVALQEVFDKVMSEPIRPHFAIASVGPGFEIKDVLQFV 4400
            MANKNRSSPS  TPKLME +GFSLMNEDLLRNILSRLPATSFASAATVSKTWNAACCHILSRPK SSAISLKPLPLVALQEVFDKVMSEPIRPHFAIASVGPGFEIKDVLQF+
Sbjct:    1 MANKNRSSPSPTTPKLMETNGFSLMNEDLLRNILSRLPATSFASAATVSKTWNAACCHILSRPKLSSAISLKPLPLVALQEVFDKVMSEPIRPHFAIASVGPGFEIKDVLQFM 113

HSP 3 Score: 149.058 bits (375), Expect = 4.669e-34
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = -3

Query: 3559 VKWIDGNIDEVPVNTGIVLTVGFVPGLKVDVIPLLRQRKAPQGSMTDKFVQDIKSYTSSMSGCTSPQAIIMI 3774
            VKWIDGNIDEVPVNTGIVLTVGFVPGLKVDVIPLLRQRKAPQGSMTDKFVQDIKSYTSSMSGCTSPQAIIMI
Sbjct:  125 VKWIDGNIDEVPVNTGIVLTVGFVPGLKVDVIPLLRQRKAPQGSMTDKFVQDIKSYTSSMSGCTSPQAIIMI 196

HSP 4 Score: 133.265 bits (334), Expect = 5.523e-29
Identity = 65/76 (85.53%), Postives = 67/76 (88.16%), Query Frame = -2

Query: 1955 KLSGIGNIEFHFALSKGVSAIGPRLKAASVRVQDSYTVTWLTARREGQQEILDGQQMLEDIDNEV---CQCASVYI 2173
            K  GIGNIEFHFALSKGVSAIGPRLKAASVRVQDSYTVTWLTARREGQQEILDGQQMLEDIDNE+     C  +YI
Sbjct:  249 KACGIGNIEFHFALSKGVSAIGPRLKAASVRVQDSYTVTWLTARREGQQEILDGQQMLEDIDNEMENNMDCVDLYI 324

HSP 5 Score: 104.76 bits (260), Expect = 8.740e-20
Identity = 50/51 (98.04%), Postives = 50/51 (98.04%), Query Frame = -1

Query: 2709 AMSMETIIVGDERGQFVYRSSDVSRNVSTNKKHSPDAVALVFARDRNKARG 2861
            AMSMETIIVGDERGQFVYRSSDVSRNVSTNKKHSPDAVALVFARDRNKA G
Sbjct:  202 AMSMETIIVGDERGQFVYRSSDVSRNVSTNKKHSPDAVALVFARDRNKACG 252

HSP 6 Score: 87.8113 bits (216), Expect = 2.155e-14
Identity = 40/47 (85.11%), Postives = 43/47 (91.49%), Query Frame = -2

Query: 1577 QMENNMDCVDLYIGVTRRRNCSVGSDKPRMMTTLALHGIEG*DMKHF 1717
            +MENNMDCVDLYIGVTRRRN SVGSDKPRMMTTLALHGIEG D ++ 
Sbjct:  312 EMENNMDCVDLYIGVTRRRNYSVGSDKPRMMTTLALHGIEGGDSEYL 358

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097480 vs. ExPASy TrEMBL
Match: W9QC66_9ROSA (F-box/LRR-repeat protein OS=Morus notabilis GN=L484_010120 PE=4 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 7.844e-48
Identity = 57/99 (57.58%), Postives = 77/99 (77.78%), Query Frame = -1

Query: 4062 KLMEASGFSLMNEDLLRNILSRLPATSFASAATVSKTWNAACCHILSRPKFSSAISLKPLPLVALQEVFDKVMSEPIRPHFAIASVGPGFEIKDVLQFV 4358
            K+++ +GF L+ +DLL NIL+RLPA SFASAA VSK+WN     +LSRPK +SA+SL P P VA++EV DKV+++PIRP FAIASVG GF + D+ + +
Sbjct:   18 KMVKTTGFFLLTDDLLHNILARLPAPSFASAACVSKSWNRVSSQVLSRPKLASALSLDPSPQVAVREVIDKVLTDPIRPDFAIASVGSGFRLYDIFKLI 116

HSP 2 Score: 97.4413 bits (241), Expect = 7.844e-48
Identity = 57/138 (41.30%), Postives = 75/138 (54.35%), Query Frame = -3

Query: 3559 EKVRSRTPIIVSSVKGILGRDALSHEFREACSXXXXXXXXXXXXXYHCDA*IFMFLFLNSGFIKCQVKWIDGNIDEVPVNTGIVLTVGFVPGLKVDVIPLLRQRKAPQGSMTDKFVQDIKSYTSSMSGCTSPQAIIMI 3972
            +K+ ++TPII+S+  GI+GRDAL+ E +E                                     +   DG+I  V  N GIVLTVGFVPGLKVDVIPLLR  K  + ++ +KFV DI+ YT S+SGC SP  II+ 
Sbjct:  118 KKLGTKTPIIISTANGIIGRDALTDELKE-----------------------------------WDLSDDDGSITSVDENFGIVLTVGFVPGLKVDVIPLLRSTKELRDALVEKFVMDIRDYTDSVSGCKSPVGIILF 220

HSP 3 Score: 119.013 bits (297), Expect = 4.387e-24
Identity = 68/119 (57.14%), Postives = 81/119 (68.07%), Query Frame = -2

Query:  377 GDSEYLYVDGVGIRTGDYFQFYHSDPKTALSSSRNVSSTXXXXXXXXXXXXXXXXSTIINAVDKKEAFGGFIFSCLGRGESFFGQLNVDSSPFLDNFPRVPVAGTFCGGEIGRGCTSLT 733
            GD EYLYV+G+GIRTG+ FQFY SDP TAL+S   VS  L+  K +  +K+              E FGGFIFSC GRG++FF Q +VDSSPF+ NFP VP AG FCGGEIGR  +SLT
Sbjct:  391 GDEEYLYVNGLGIRTGNRFQFYGSDPDTALNSIGRVSLDLKNFKFNESTKNI-----------SHEVFGGFIFSCYGRGDTFFTQEDVDSSPFVKNFPGVPFAGIFCGGEIGRSSSSLT 498

HSP 4 Score: 76.2554 bits (186), Expect = 1.176e-10
Identity = 36/59 (61.02%), Postives = 45/59 (76.27%), Query Frame = -2

Query: 1988 GIGNIEFHFALSKGVSAIGPRLKAASVRVQDSYTVTWLTARREGQQEILDGQQMLEDID 2164
             IGNI+FH ALS GVSAIGP  +AAS+RV      TWLTA+ EGQ+ ILDGQ+++ DI+
Sbjct:  290 AIGNIQFHVALSNGVSAIGPTYRAASIRVNCLDHSTWLTAKIEGQRAILDGQRIMNDIN 348

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097480 vs. ExPASy TrEMBL
Match: W9RDL8_9ROSA (F-box/LRR-repeat protein OS=Morus notabilis GN=L484_006830 PE=4 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.057e-46
Identity = 58/99 (58.59%), Postives = 78/99 (78.79%), Query Frame = -1

Query: 4062 KLMEASGFSLMNEDLLRNILSRLPATSFASAATVSKTWNAACCHILSRPKFSSAISLKPLPLVALQEVFDKVMSEPIRPHFAIASVGPGFEIKDVLQFV 4358
            K+++ +GFSL+ +DLL NIL+RLPA SFASAA VSK+WN     +LSRPK +SA+SL P P VA++EV DKV+++PIRP FAIASVG GF + D+ + +
Sbjct:   18 KMVKTTGFSLLTDDLLHNILARLPAPSFASAACVSKSWNRVSSQVLSRPKLASALSLDPSPQVAVREVIDKVLTDPIRPDFAIASVGSGFRLYDIFKLI 116

HSP 2 Score: 90.5077 bits (223), Expect = 1.057e-46
Identity = 60/164 (36.59%), Postives = 77/164 (46.95%), Query Frame = -3

Query: 3559 EKVRSRTPIIVSSVKGILGRDALSHEFREACSXXXXXXXXXXXXXYHCDA*IFMFLFLNSGFIKCQVKWI---------DGNIDEVPVNTGIVLTVGFVPGLKVDVIPLLRQRK-----------------APQGSMTDKFVQDIKSYTSSMSGCTSPQAIIMI 3972
            +K+ ++TPII+S+  GI+GRDAL+ E +E                                     VKW          DG+I     N GIVLTVGFVPGLKVDVIPLLR  K                  P+ ++ +KFV DI+ YT S+SGC SP  II+ 
Sbjct:  118 KKLGTKTPIIISTANGIIGRDALTDELKE-------------------------------------VKWTSFSGDLSDDDGSITSEDENFGIVLTVGFVPGLKVDVIPLLRSTKVDVLRNADTSEIFYVAQEPRDALVEKFVMDIRDYTDSVSGCKSPVGIILF 244

HSP 3 Score: 153.295 bits (386), Expect = 3.265e-35
Identity = 85/147 (57.82%), Postives = 98/147 (66.67%), Query Frame = -2

Query:  293 GDSEYLYVDGVGIRTGDYFQFYHSDPKTALSSSRNVSSTXXXXXXXXXXXXXXXXSTIINAVDKKEAFGGFIFSCLGRGESFFGQLNVDSSPFLDNFPRVPVAGTFCGGEIGRGCTSLTANGDEGGSARCHLHVYSTVYLVMSYTPP 733
            GD EYLYV+G+GIRTGD FQFY SDP TAL+S   VS  L+  K +   K+              E FGGFIFSC GRG++FF + +VDSSPF+ NFP VP AG FCGGEIGR  +SLT  G +     C LHVYSTVYLVMSYT P
Sbjct:  415 GDDEYLYVNGLGIRTGDRFQFYRSDPDTALNSIGRVSLDLKNFKFNESRKNI-----------SHEVFGGFIFSCYGRGDTFFTREDVDSSPFVKNFPGVPFAGIFCGGEIGRSSSSLTEEGHKENVPSCCLHVYSTVYLVMSYTSP 550

HSP 4 Score: 81.2629 bits (199), Expect = 3.227e-12
Identity = 39/59 (66.10%), Postives = 46/59 (77.97%), Query Frame = -2

Query: 1988 GIGNIEFHFALSKGVSAIGPRLKAASVRVQDSYTVTWLTARREGQQEILDGQQMLEDID 2164
            GIGNI FH ALS GVSAIGP  +AASVRV  S   TWLTA+ EGQ+ ILDGQ+++ DI+
Sbjct:  314 GIGNIRFHVALSNGVSAIGPTYRAASVRVNCSDHSTWLTAKIEGQRAILDGQRIMNDIN 372

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097480 vs. ExPASy TrEMBL
Match: B9IFD9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s11080g PE=4 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 3.463e-45
Identity = 57/93 (61.29%), Postives = 71/93 (76.34%), Query Frame = -1

Query: 4062 FSLMNEDLLRNILSRLPATSFASAATVSKTWNAACCHILSRPKFSSAISLKPLPLVALQEVFDKVMSEPIRPHFAIASV-GPGFEIKDVLQFV 4337
            F+ +NEDL+ NIL RLPA SFASAA VSK+WN  C  IL +PKF+SA SL P   VAL+EV +KV+SEPIRPHFAIA+V G G ++ + L F+
Sbjct:   19 FASINEDLILNILKRLPALSFASAACVSKSWNQICNQILYKPKFASAFSLNPDEKVALEEVVNKVLSEPIRPHFAIANVIGSGVDLSERLNFL 111

HSP 2 Score: 95.5153 bits (236), Expect = 3.463e-45
Identity = 56/140 (40.00%), Postives = 73/140 (52.14%), Query Frame = -3

Query: 3559 MVEKVRSRTPIIVSSVKGILGRDALSHEFREACSXXXXXXXXXXXXXYHCDA*IFMFLFLNSGFIKCQVKWIDGNIDEVPVNTGIVLTVGFVPGLKVDVIPLLRQRKAPQGSMTDKFVQDIKSYTSSMSGCTSPQAIIMI 3978
            +  K+  +TPIIVS   GI+GRDA++ E RE                                 +  +  W+DG  +  P N GI+LTVGF+PGLKVD IPL + RK  + +M D FV DIK Y +S+SGC SP  IIM 
Sbjct:  111 LATKLGFQTPIIVSCTSGIMGRDAVTDEHRE---------------------------------VMLEEYWVDGESN--PCN-GIILTVGFLPGLKVDAIPLFQPRKGCRATMVDNFVMDIKDYATSISGCASPVGIIMF 214

HSP 3 Score: 25.0238 bits (53), Expect = 3.463e-45
Identity = 9/19 (47.37%), Postives = 13/19 (68.42%), Query Frame = -1

Query: 3426 GFLIL*DGSVDQKPILEKL 3482
            G ++  D   DQKP++EKL
Sbjct:  210 GIIMFGDEDADQKPVMEKL 228

HSP 4 Score: 163.696 bits (413), Expect = 1.563e-38
Identity = 91/147 (61.90%), Postives = 105/147 (71.43%), Query Frame = -2

Query:  296 GDSEYLYVDGVGIRTGDYFQFYHSDPKTALSSSRNVSSTXXXXXXXXXXXXXXXXSTIINAVDKKEAFGGFIFSCLGRGESFFGQLNVDSSPFLDNFPRVPVAGTFCGGEIGRGCTSLTAN-GDEGGSARCHLHVYSTVYLVMSYTP 733
            GD EYL+ DGVGIRTGDYFQFYH DP  ALSS  NVS   R L LDW S++ L    + + V  KE  GGF+FSC GRGESFF + NVDSSPFLDNFP  P+AG FC GEIGRG +   A+ G E  ++ C LHVYS VYL++SYTP
Sbjct:  384 GDQEYLFADGVGIRTGDYFQFYHPDPSAALSSCSNVSKNFRNLNLDWSSRNCLHARGVYDNVCNKELVGGFVFSCCGRGESFFERCNVDSSPFLDNFPGFPMAGIFCRGEIGRGFSVFNADEGQEERTSHCCLHVYSAVYLLVSYTP 530

HSP 5 Score: 81.6481 bits (200), Expect = 2.209e-12
Identity = 40/67 (59.70%), Postives = 50/67 (74.63%), Query Frame = -2

Query: 1979 KLSGIGNIEFHFALSKGVSAIGPRLKAASVR--VQDSYTVTWLTARREGQQEILDGQQMLEDIDNEV 2173
            K  G G I+FH ALS GVSA+GPR KA SV+  V  +   TWLTARREG+ EI DGQ++L+DI+NE+
Sbjct:  278 KPCGTGEIQFHAALSSGVSAVGPRYKAVSVKKIVSGTGHTTWLTARREGEHEIQDGQRILDDINNEL 344

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097480 vs. ExPASy TrEMBL
Match: A0A067FLT0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g008790mg PE=4 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 9.405e-44
Identity = 55/87 (63.22%), Postives = 66/87 (75.86%), Query Frame = -1

Query: 4062 EDLLRNILSRLPATSFASAATVSKTWNAACCHILSRPKFSSAISLKPLPLVALQEVFDKVMSEPIRPHFAIASVGPGFEIKDVLQFV 4322
            ED+L NILSRLPA SFASAA V+K+WN  C  ILSRP+ +SA S K    +ALQEV DKV+ EPIRPHFAIA+VG GF ++  L F+
Sbjct:   25 EDVLHNILSRLPAKSFASAACVNKSWNCVCNSILSRPRIASACSFKASAPIALQEVLDKVLLEPIRPHFAIANVGRGFNMRRTLDFL 111

HSP 2 Score: 91.6633 bits (226), Expect = 9.405e-44
Identity = 61/152 (40.13%), Postives = 82/152 (53.95%), Query Frame = -3

Query: 3559 MVEKVRSRTPIIVSSVKGILGRDALSHEFREACSXXXXXXXXXXXXXYHCDA*IFMFLFLNSGFIKCQVKWIDGNIDEVPVNTGIVLTVGFVPGLKVDVIPLLRQRK------------APQGSMTDKFVQDIKSYTSSMSGCTSPQAIIMI 3978
            +V+ +  RTPII+S V G++GRDAL+ EFRE              F  H D      + +N G   C  +            +GIVLTVG++PGLKVD IPLLR+++            AP   M D+FV DI++YT+S+SGC SP  IIM 
Sbjct:  111 LVKHLGLRTPIILSVVHGVMGRDALTDEFREV------------KFQDHED------IGVNRGICTCGQQ------------SGIVLTVGYLPGLKVDAIPLLRRKEVPVDDTYVDVYLAPPVPMIDQFVMDIQNYTTSVSGCASPVGIIMF 232

HSP 3 Score: 23.0978 bits (48), Expect = 9.405e-44
Identity = 9/19 (47.37%), Postives = 13/19 (68.42%), Query Frame = -1

Query: 3426 GFLIL*DGSVDQKPILEKL 3482
            G ++     +DQKPI+EKL
Sbjct:  228 GIIMFGKEDMDQKPIIEKL 246

HSP 4 Score: 162.925 bits (411), Expect = 2.661e-38
Identity = 87/147 (59.18%), Postives = 105/147 (71.43%), Query Frame = -2

Query:  299 GDSEYLYVDGVGIRTGDYFQFYHSDPKTALSSSRNVSSTXXXXXXXXXXXXXXXXSTIINAVDKKEAFGGFIFSCLGRGESFFGQLNVDSSPFLDNFPRVPVAGTFCGGEIGRGCTSLTAN--GDEGGSARCHLHVYSTVYLVMSYT 733
            GD EYLYVDGVGI+TGDYFQFY  D   AL++ RN S  +R LKL+   K  L +  + N++D+KE  GGFIFSC GRG SFFG LNVDS PF +NFP  P+AG FCGGEIGRG  S+T     +E  + R +LHVYST YLV+SY+
Sbjct:  399 GDQEYLYVDGVGIKTGDYFQFYQPDHNAALAACRNASENIRNLKLNSSGKGFLGRRDVANSIDRKEVLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGRGKLSMTGQESQEESPAERRYLHVYSTAYLVISYS 545

HSP 5 Score: 78.5666 bits (192), Expect = 1.962e-11
Identity = 37/63 (58.73%), Postives = 44/63 (69.84%), Query Frame = -2

Query: 1985 KLSGIGNIEFHFALSKGVSAIGPRLKAASVRVQDSYTVTWLTARREGQQEILDGQQMLEDIDN 2173
            K  G G I+FH A+S+GVSAIGPR KA SVR   +   TWLTA+REG   ILDG+Q+L  ID 
Sbjct:  296 KPHGTGEIQFHLAMSEGVSAIGPRHKAVSVRANHAEGSTWLTAKREGHHVILDGEQILRHIDQ 358

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097480 vs. ExPASy TrEMBL
Match: B9I3U0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s10230g PE=4 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.658e-43
Identity = 58/98 (59.18%), Postives = 77/98 (78.57%), Query Frame = -1

Query: 4062 MEASGFSLMNEDLLRNILSRLPATSFASAATVSKTWNAACCHILSRPKFSSAISLKPLPLVALQEVFDKVMSEPIRPHFAIASV-GPGFEIKDVLQFV 4352
            M  + F+ +NEDL++NI+ RLPA+SFASAA VSK+WN  C  ILS+PKF+SA SL P   VAL+EV +KV+SEPIRPHFAIA+V G G ++++ L F+
Sbjct:   10 MPMTSFASINEDLVQNIVKRLPASSFASAACVSKSWNQICNQILSKPKFASAFSLNPNEKVALEEVVNKVLSEPIRPHFAIANVIGSGVDLREKLDFL 107

HSP 2 Score: 85.1149 bits (209), Expect = 1.658e-43
Identity = 53/140 (37.86%), Postives = 72/140 (51.43%), Query Frame = -3

Query: 3559 MVEKVRSRTPIIVSSVKGILGRDALSHEFREACSXXXXXXXXXXXXXYHCDA*IFMFLFLNSGFIKCQVKWIDGNIDEVPVNTGIVLTVGFVPGLKVDVIPLLRQRKAPQGSMTDKFVQDIKSYTSSMSGCTSPQAIIMI 3978
            +  K+ S+TPIIVS   GI+GRDA++ E RE                                 +  +  W DG   E     GI+LTVGF+PGLKVDVIPLL+ RK  + ++ D FV +I+ Y +S+SG  SP  II+ 
Sbjct:  107 LATKLGSQTPIIVSCASGIMGRDAVTGEHRE---------------------------------VMLEEYWADG---ESISCFGIILTVGFLPGLKVDVIPLLQPRKVHRPALVDYFVMNIRDYAASVSGWASPAGIILF 210

HSP 3 Score: 25.409 bits (54), Expect = 1.658e-43
Identity = 9/19 (47.37%), Postives = 13/19 (68.42%), Query Frame = -1

Query: 3426 GFLIL*DGSVDQKPILEKL 3482
            G ++  D   DQKP++EKL
Sbjct:  206 GIILFGDEGADQKPVMEKL 224

HSP 4 Score: 164.851 bits (416), Expect = 7.563e-39
Identity = 99/149 (66.44%), Postives = 108/149 (72.48%), Query Frame = -2

Query:  296 GDSEYLYVDGVGIRTGDYFQFYHSDPKTALSSSRNVSSTXXXXXXXXXXXXXXXXSTIINAVDKKEAFGGFIFSCLGRGESFFGQLNVDSSPFLDNFPRVPVAGTFCGGEIGRGCTSLTANGDEGGSAR---CHLHVYSTVYLVMSYTP 733
            GD EYL+ DGVGIRTGDYFQFYHSDP TALSS   VS   RKLKLDW S++ L      N V  KE  GGF+FSC GRGESFF + NVDSSPFLDNFP VP+AG FC GEIGRG + L  N DEG   R   C LHVYST YL++SYTP
Sbjct:  401 GDQEYLFADGVGIRTGDYFQFYHSDPTTALSSCNEVSKNFRKLKLDWSSRNCLQAGVSDN-VCSKELVGGFVFSCCGRGESFFERCNVDSSPFLDNFPGVPMAGVFCRGEIGRGFSVL--NADEGPEERTLHCCLHVYSTAYLLVSYTP 546

HSP 5 Score: 77.0258 bits (188), Expect = 5.176e-11
Identity = 41/62 (66.13%), Postives = 48/62 (77.42%), Query Frame = -2

Query: 1979 GNIEFHFALSKGVSAIGPRLKAASVRVQDSYT--VTWLTARREGQQEILDGQQMLEDIDNEV 2158
            G I+FH ALS GVSAIGPR KA SVR   S T   T LTARREG+QEI DGQ++L+DI+NE+
Sbjct:  300 GEIQFHAALSSGVSAIGPRYKAVSVRKIGSETGCTTLLTARREGEQEIQDGQRILDDINNEL 361

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097480 vs. ExPASy TrEMBL
Match: A0A067FAN0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g008790mg PE=4 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.052e-43
Identity = 55/87 (63.22%), Postives = 66/87 (75.86%), Query Frame = -1

Query: 4062 EDLLRNILSRLPATSFASAATVSKTWNAACCHILSRPKFSSAISLKPLPLVALQEVFDKVMSEPIRPHFAIASVGPGFEIKDVLQFV 4322
            ED+L NILSRLPA SFASAA V+K+WN  C  ILSRP+ +SA S K    +ALQEV DKV+ EPIRPHFAIA+VG GF ++  L F+
Sbjct:   25 EDVLHNILSRLPAKSFASAACVNKSWNCVCNSILSRPRIASACSFKASAPIALQEVLDKVLLEPIRPHFAIANVGRGFNMRRTLDFL 111

HSP 2 Score: 90.5077 bits (223), Expect = 2.052e-43
Identity = 61/155 (39.35%), Postives = 82/155 (52.90%), Query Frame = -3

Query: 3559 MVEKVRSRTPIIVSSVKGILGRDALSHEFREACSXXXXXXXXXXXXXYHCDA*IFMFLFLNSGFIKCQVKWIDGNIDEVPVNTGIVLTVGFVPGLKVDVIPLLRQRK---------------APQGSMTDKFVQDIKSYTSSMSGCTSPQAIIMI 3978
            +V+ +  RTPII+S V G++GRDAL+ EFRE              F  H D      + +N G   C  +            +GIVLTVG++PGLKVD IPLLR+++               AP   M D+FV DI++YT+S+SGC SP  IIM 
Sbjct:  111 LVKHLGLRTPIILSVVHGVMGRDALTDEFREV------------KFQDHED------IGVNRGICTCGQQ------------SGIVLTVGYLPGLKVDAIPLLRRKEIVQVPVDDTYVDVYLAPPVPMIDQFVMDIQNYTTSVSGCASPVGIIMF 235

HSP 3 Score: 23.0978 bits (48), Expect = 2.052e-43
Identity = 9/19 (47.37%), Postives = 13/19 (68.42%), Query Frame = -1

Query: 3426 GFLIL*DGSVDQKPILEKL 3482
            G ++     +DQKPI+EKL
Sbjct:  231 GIIMFGKEDMDQKPIIEKL 249

HSP 4 Score: 162.925 bits (411), Expect = 2.958e-38
Identity = 87/147 (59.18%), Postives = 105/147 (71.43%), Query Frame = -2

Query:  299 GDSEYLYVDGVGIRTGDYFQFYHSDPKTALSSSRNVSSTXXXXXXXXXXXXXXXXSTIINAVDKKEAFGGFIFSCLGRGESFFGQLNVDSSPFLDNFPRVPVAGTFCGGEIGRGCTSLTAN--GDEGGSARCHLHVYSTVYLVMSYT 733
            GD EYLYVDGVGI+TGDYFQFY  D   AL++ RN S  +R LKL+   K  L +  + N++D+KE  GGFIFSC GRG SFFG LNVDS PF +NFP  P+AG FCGGEIGRG  S+T     +E  + R +LHVYST YLV+SY+
Sbjct:  402 GDQEYLYVDGVGIKTGDYFQFYQPDHNAALAACRNASENIRNLKLNSSGKGFLGRRDVANSIDRKEVLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGRGKLSMTGQESQEESPAERRYLHVYSTAYLVISYS 548

HSP 5 Score: 78.5666 bits (192), Expect = 2.155e-11
Identity = 37/63 (58.73%), Postives = 44/63 (69.84%), Query Frame = -2

Query: 1985 KLSGIGNIEFHFALSKGVSAIGPRLKAASVRVQDSYTVTWLTARREGQQEILDGQQMLEDIDN 2173
            K  G G I+FH A+S+GVSAIGPR KA SVR   +   TWLTA+REG   ILDG+Q+L  ID 
Sbjct:  299 KPHGTGEIQFHLAMSEGVSAIGPRHKAVSVRANHAEGSTWLTAKREGHHVILDGEQILRHIDQ 361

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097480 vs. ExPASy TrEMBL
Match: A0A067FAN5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g036974mg PE=4 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.884e-42
Identity = 55/79 (69.62%), Postives = 65/79 (82.28%), Query Frame = -1

Query: 4098 SLMNEDLLRNILSRLPATSFASAATVSKTWNAACCHILSRPKFSSAISLKPLPLVALQEVFDKVMSEPIRPHFAIASVG 4334
            +L NEDLL++ILSRLPA SFASAA V+K+WN  C  ILS+PK +SA+SL P   VA+ EV DKV+SEPIRPHFAIASVG
Sbjct:    7 ALGNEDLLQHILSRLPALSFASAACVNKSWNKVCNQILSKPKLASALSLSPSLHVAVSEVLDKVLSEPIRPHFAIASVG 85

HSP 2 Score: 91.2781 bits (225), Expect = 3.884e-42
Identity = 54/147 (36.73%), Postives = 78/147 (53.06%), Query Frame = -3

Query: 3559 TGQMV-EKVRSRTPIIVSSVKGILGRDALSHEFREACSXXXXXXXXXXXXXYHCDA*IFMFLFLNSGFIKCQVKWI---DGNIDEVPVNTGIVLTVGFVPGLKVDVIPLLRQRKAPQGSMTDKFVQDIKSYTSSMSGCTSPQAIIMI 3987
            T Q++  ++ SRTP+I ++V GI+G DA                        H D               C+VKW    D  +++     GIVL VG+VPGLKV+ IPLLR ++ P+ SM DKF+ DI+ Y++S+SGC+SP  II+ 
Sbjct:   93 THQLITARLGSRTPVITNAVTGIIGLDA------------------------HLDE-------------ICEVKWTLLEDNLLNDFDHCYGIVLIVGYVPGLKVETIPLLRSKEEPEFSMVDKFLMDIRHYSASISGCSSPNGIILF 202

HSP 3 Score: 86.6557 bits (213), Expect = 5.862e-14
Identity = 71/162 (43.83%), Postives = 82/162 (50.62%), Query Frame = -2

Query:  293 GDSEYLYVDGVGIRTGDYFQFYHSDPKTALSSSRNVSSTXXXXXXXXXXXXXXXXSTIINAVDKKEAFGGFIFSCLGRGESF-----------FGQLNVDSSPFLDNFPRVPVAGTFCGGEI--GRGCTSLTANGDE--GGSARCHLHVYSTVYLVMSYTPP 733
             + ++  V+GVGI+ GD F FYHSD  TA SSS +V   LR L       +     T  N    KE FGG IFSC  R                  +  +S PF  NFP  P+AG FC GEI  GRG T L    +E    S RC LH YSTVYLVMSYT P
Sbjct:  361 AEDQFFIVNGVGIKPGDSFIFYHSDSDTASSSSIDVLDGLRLLNASSCCGTIGRNVTNAN----KEVFGGLIFSCFSRSVPLSEDDDGDDDEDDNDVYFESYPFCRNFPETPLAGIFCYGEIGRGRGLTRLINQEEEDCSISGRCLLHHYSTVYLVMSYTIP 518

The following BLAST results are available for this feature:

BLAST of g.barbadense_cottongen_reftransV1_0097480 vs. ExPASy Swiss-Prot
BLAST of g.barbadense_cottongen_reftransV1_0097480 vs. ExPASy TrEMBL

BLAST of g.barbadense_cottongen_reftransV1_0097480 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 1


Match Name	E-value	Identity	Description
FBL91_ARATH	4.493e-32	49.11	F-box/LRR-repeat protein At5g63520 OS=Arabidopsis ...	[more]

BLAST of g.barbadense_cottongen_reftransV1_0097480 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0D2QJG2_GOSRA	2.814e-76	99.33	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A061FZ19_THECC	6.728e-74	74.34	F-box family protein, putative isoform 1 OS=Theobr...	[more]
A0A0B0MUP5_GOSAR	6.191e-69	97.99	Uncharacterized protein OS=Gossypium arboreum GN=F...	[more]
W9QC66_9ROSA	7.844e-48	57.58	F-box/LRR-repeat protein OS=Morus notabilis GN=L48...	[more]
W9RDL8_9ROSA	1.057e-46	58.59	F-box/LRR-repeat protein OS=Morus notabilis GN=L48...	[more]
B9IFD9_POPTR	3.463e-45	61.29	Uncharacterized protein OS=Populus trichocarpa GN=...	[more]
A0A067FLT0_CITSI	9.405e-44	63.22	Uncharacterized protein OS=Citrus sinensis GN=CISI...	[more]
B9I3U0_POPTR	1.658e-43	59.18	Uncharacterized protein OS=Populus trichocarpa GN=...	[more]
A0A067FAN0_CITSI	2.052e-43	63.22	Uncharacterized protein OS=Citrus sinensis GN=CISI...	[more]
A0A067FAN5_CITSI	3.884e-42	69.62	Uncharacterized protein OS=Citrus sinensis GN=CISI...	[more]

Pages

InterPro

Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019494	FIST, C-domain	PFAM	PF10442	FIST_C	coord: 18..118 e-value: 4.2E-10 score: 39.6
None	No IPR available	PANTHER	PTHR14939:SF5	F-BOX ONLY PROTEIN 22	coord: 6..153
None	No IPR available	PANTHER	PTHR14939	FAMILY NOT NAMED	coord: 6..153

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.barbadense_cottongen_reftransV1_0097480 ID=g.barbadense_cottongen_reftransV1_0097480; Name=g.barbadense_cottongen_reftransV1_0097480; organism=Gossypium barbadense; type=contig; length=4502bp
ATCAGACCGCACAAGTAACATATTTTCATTGTTATGTTCATGCAAATTTA
TAGAAAAAAAAATTCTACACCTATGGTCAATGGAATCTACTCAGCTTCTT
CCCCTCATTTCTCAATAACAATTTTCAAATCAGTACAACAATTTAACCCA
AAAACACATGAAAGAAAATGGCAGTCTATATTGCTGATAGAACATGAAAA
TGCCAACAAAGATCTAGTTTTTTCATAAGGTTGTTGGCTTTGTTATGCAC
TTTTTGACCCCAAAAACTCAGAATGGGTAACTTTTAATGCTCTGGAGGTG
TATACGACATTACCAGATAAACGGTGCTATAGACGTGTAGATGGCAACGA
GCAGAGCCGCCTTCATCTCCATTTGCAGTTAAGCTTGTACAGCCACGCCC
AATTTCCCCACCACAAAATGTTCCGGCTACCGGAACCCTAGGAAAGTTAT
CCAAGAATGGGGAACTATCAACATTAAGTTGACCGAAGAATGATTCCCCA
CGTCCAAGGCATGAAAAGATAAAACCTCCAAAAGCTTCCTTCTTATCAAC
GGCATTGATAATTGTGCTTTTGCTGAGGCTGCTTTTGGAATCCCAATCCA
ACTTCAATTTTCTAAGGGTTGAGGAGACATTTCTGCTTGAAGATAATGCA
GTCTTTGGATCCGAATGGTAAAACTGAAAATAGTCACCAGTTCTGATACC
AACACCATCAACATAAAGGTACTCTGAATCTCCTCTGTTGAACAACATTA
ATCCGTTTGATTAAAATAAAAAAGGAAAGTAAATGAATGTGTACAAATGC
AATCCTTGCCTAAGTTTTATTTGCAGCCACGTGTGATACAGAGAGAAGTA
AAAACAACTGTTAGACTAAGTTTTTACCACTGAAGTATGAAAAACGGTTC
TTGTGCATCACTATGGTTGGCCAGAAAAACGAAAACAGAAGAATGATATT
GAAGTTTTGTTGATCAATGTCACATCATTGATCTTAGAATGACTTATTGA
TTCTTGAAGAGAGAGATCTTATTACAATGTATGGTTAACCAAATGCCACT
ATTAATAGACAAATAATTTACTGTACTCACTGTATTCTAATTGACTTGCA
CCAAACAGTGAAAGTATCTACTAATCCGAAAGCAAATGCTCTTATTGCAA
GTAAAGAAGAATAACCGGCTCACTTGTAATTCATAAACAAACGCCAAGTA
TCATACAACAGAAAGTATAGCAAAGGGCCCCAATATTCCTTAAACCTTCA
CCATTTAAGCAAGTTCATCTCTAATAAGTCTATGAATGCAGCAGATGAGT
GGCTAACTACCATAAGTAAGTCGGCAACTATACACTTGGCTCTACAACTC
AATTTGTGCCAGCAACTAACATGACAATTATGTAGATAGCAAATATATAC
TCAAGAGGACAGGTTAACTGTGGAGAGAGAAAAGGTACACAACAAGAAGG
TTTGATTGCTGAACATGACAATTATGTAATGTGTTTGTACACATACAGGT
GTCTGGGAGTGCAACCCATACAACCTAGCCCCTGGCATGCATGCCATATT
TTCTGTGAAACCAAACAAAAATGGGGAAAATGTTTCATATCTTACCCTTC
AATTCCATGGAGTGCCAAGGTTGTCATCATCCTAGGCTTATCTGAGCCAA
CAGAACAGTTCCGTCGCCTTGTAACCCCAATGTAAAGATCAACACAGTCC
ATATTATTTTCCATCTGCCATTTATTTTCACTTGAAAAGGTTTAAGAGTA
TGGATGAATCATAAAGAATAAGCAGTGCTCATAAGCACATGAATCTTTTT
GATATGGTATCAACACAATGGATCAAAACATCGGTAGAATGGGTGTAGGC
TTCAAGACAAAAGAATCAATTAGGAGCACAAAATATTTACATTAAACAGT
CAGTTCGCATTGCATCCGCATATTTTAAATATTTCTATAAAGCTCATGCT
TTCTTATATACACAGAAGCACATTGACATACCTCATTATCAATATCTTCC
AGCATCTGTTGACCATCAAGAATCTCCTGCTGTCCTTCTCTTCTAGCAGT
GAGCCAGGTGACAGTATAAGAGTCTTGCACTCTAACAGAAGCTGCCTTAA
GCCTTGGTCCAATTGCTGAGACACCCTTTGACAGTGCAAAATGAAATTCA
ATATTCCCTATACCTGACAATTTAACACACGTCAGCATAGGCTACCAAAT
TGGGATGAAAAGAGGAGAGAAAATGACAAAGAAGTTATGTGTGCATATTT
ACAAGAATATGCATTTTTAGAAATTTTCATTTTCTTTCCTCATTTTCAGC
TTCACAAAGCAATGGATGGAAAAGTGATTACTTTTTCTTTCCATTTTTTA
ATATTTCCTGCCAAGCACCCCAATGAAAAGAAAATATATATTTTCTATTT
TTCTACTTCACTCCTTCAATTTTCCATCTTTCCATCTTTCTTTCCACCTT
ACCAATTAAAGCCTATACGATGTAACCAATGACAAGAAGAACCATGAACG
AGCCCTTAGGCTTTGCTCAACACGAAGGATGGAAAGGAGTAAGGATTGAA
ATGTAATACAGTTTATATGGACTTTCTCAGGAATGAGAACAACTATCTTC
ACCTATTACACTTGAAAAAGGAAAATTATGCACGTGTGACAATTAAAACA
ATTAATAAGCTTCATAAAATTTGAGAAAAATAAATAAATGCATAACGTAG
GAATAGTTACCACGGGCTTTGTTTCTATCTCTTGCAAATACAAGAGCAAC
AGCATCAGGAGAGTGTTTTTTATTAGTGCTGACATTTCTTGAGACATCAC
TACTTCTATACACAAACTGACCTCTCTCATCACCCACAATGATTGTTTCC
ATAGACATAGCATAATCTGAGATGGACAAGATTATCAAAGAGTATAATAA
ATCATGCGCAAATTTTCTGAATAACATGAAAAGAGGGAAAATAGAGCTAG
AACTAATCTAACAACCACCTAGGTCCTACGTACTTGGGAGCTTGGAAGAG
GTGAGAAGGAATTATCATAGAGGTCATTGATCATGTATATATGATTGACC
CAACATTGATATGTTCCACTCCATATGTTGAACAAACACTTTGAGCACGT
GTTTGTGCCACTAAGACTAGAATGTAGATGAGTGATTATTATTTTCTCAT
TAAGAATATAAATTTGATGGAAATCTGGGCCAGAGTTTAGGCAATATTTT
CTTAATTGCACGTTCCCATTCAGATTCAAAAGGAATAGTTGTGCTTGGAA
AGAAACAATAGGTACATTAGAGTGGAATCTTTTGAATTTCTGATGCATAG
ATGGTCTAAATAGTTAGTTCCCCTATGCTTACAATCAGTTCAAGCTATCA
GATGGATGAACAATTTTGTTCTATCAAAAAGCAAAATGAAAAATAAAAAT
AGGGGAAATGGAAAAAAAACTTGCCTAACTTTTCAAGAATAGGTTTCTGG
TCAACACTTCCATCCTACAAAATCAAGAAGCCACATCAAAGCACAACCAA
GTAAGAGACCCTAACTTGTAGTGGAAGAGGACACACAACAAACATGGCAA
CTTACTCCGATCATTATAATCGCCTGCGGTGATGTGCAACCTGACATAGA
GGATGTGTAAGACTTAATATCCTGCACGAACTTGTCAGTCATTGACCCTT
GAGGTGCCTTCCTCTGTCGTAAAAGAGGGATCACATCGACTTTGAGTCCC
GGAACAAATCCAACAGTCAATACGATGCCAGTATTTACAGGAACTTCATC
AATATTACCATCAATCCACTTAACCTGACATTTTATAAAACCAGAATTTA
AAAACAAAAACATAAAAATTTAAGCATCACAATGGTAATAGAATAGGAAT
ACTTAAAATAAAAAATCATAAAAGAAAGAACAAGCCTCTCTAAATTCATG
AGAAAGTGCATCTCGTCCAAGAATTCCTTTAACAGAAGATACAATAATCG
GAGTTCTTGATCGCACTTTTTCTACCATCTGCCCAGTAAACACAGGTTAA
AATTTTAAAGAAAATTAACTTCAACCCATTAGGGAAGAGAAAGAGAGATT
TTTAGAATTCATACAAATTGCAGAACATCTTTGATTTCAAACCCAGGACC
AACACTTGCAATAGCAAAATGAGGTCGAATTGGTTCTGACATAACCTTGT
CAAAAACTTCTTGTAAAGCAACAAGAGGCAAAGGCTTGAGGGAGATGGCG
GAGGAGAACTTAGGGCGAGAGAGGATATGACAGCAAGCAGCGTTCCAAGT
CTTAGAGACGGTGGCAGCGGAAGCGAAAGAGGTGGCAGGTAGCCTTGAAA
GTATGTTTCGAAGAAGATCCTCATTCATTAGAGAAAACCCACTGGCTTCC
ATGAGTTTGGGTGTTGCTGAAGAAGGTGATGATCGGTTCTTATTCGCCAT
TGAAGGCTTAAGCAAAGGAACACTCTCAACAGCTCTTTTCAAGTCTTTCT
TGTTTTCTGGGCTTCAGTTTCATTCGACTTTATTTCATAGTTTCCTTTTT
CG

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR019494	FIST_C

Search form

g.barbadense_cottongen_reftransV1_0097480, g.barbadense_cottongen_reftransV1_0097480 (contig) Gossypium barbadense

Pages