g.barbadense_cottongen_reftransV1_0097428, g.barbadense_cottongen_reftransV1_0097428 (contig) Gossypium barbadense

Overview
Nameg.barbadense_cottongen_reftransV1_0097428
Unique Nameg.barbadense_cottongen_reftransV1_0097428
Typecontig
OrganismGossypium barbadense (Sea Island cotton)
Sequence length2026
Homology
BLAST of g.barbadense_cottongen_reftransV1_0097428 vs. ExPASy TrEMBL
Match: A0A0B0N2U9_GOSAR (Cyclin-dependent kinase inhibitor 6-like protein OS=Gossypium arboreum GN=F383_33251 PE=4 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.598e-41
Identity = 95/132 (71.97%), Postives = 106/132 (80.30%), Query Frame = -1
Query: 1103 MRRKCRKFGEIAVMELSDVGLRTRAMAAATGTVQKKRRRLNGDGDAEF---KATSSRASTTSYIQLRSRRILVDHHRLNENRCLSPNLDHDDDVSCCSSNIGSSEKRIIQLPDLEDESMEVETSTHLNFRER 1489
            MRRKCR  GEIAVMEL+DV  +TRA+A  TG+VQKKRRRLN DG+ E    K TSS  STTSYIQLRSR IL D HR + NRCLS N DHDDDVSCCSSNI SS+KRI++LPDLEDES+EVETSTH +  ER
Sbjct:    1 MRRKCRTIGEIAVMELADVRDQTRAVAT-TGSVQKKRRRLN-DGNEEEECRKVTSSTTSTTSYIQLRSRTILADRHRRDSNRCLSLNSDHDDDVSCCSSNIESSDKRIMELPDLEDESIEVETSTHFSSSER 130          

HSP 2 Score: 87.0409 bits (214), Expect = 1.002e-15
Identity = 55/134 (41.04%), Postives = 67/134 (50.00%), Query Frame = -3
Query:  492 SSVNSSRRETTPSSELRAEPEALDSTSRQSEANSRRRSTAEKMPTXXXXXXXXXXXXXXXXXXXXXKYXXXXXXXXXXXFSAVTTFLA---TKRQFQFSN*KRFFPPFLFTIFRYNYDIVKDEPLKGRYQWVRL 884
            +  +SS RETTP +ELRAEPE LDSTSR SE NSR RST EKMPT                                   + +  F A    K Q QF++             +YN+DIVKDEPL+GRY+W+RL
Sbjct:  123 THFSSSERETTPLNELRAEPEDLDSTSRPSETNSRHRSTVEKMPT----------------------------------EAELEEFFAPAEEKLQKQFAD-------------KYNFDIVKDEPLEGRYEWIRL 209          
BLAST of g.barbadense_cottongen_reftransV1_0097428 vs. ExPASy TrEMBL
Match: A0A0B0P7D1_GOSAR (Cyclin-dependent kinase inhibitor 6-like protein OS=Gossypium arboreum GN=F383_26380 PE=4 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 2.870e-31
Identity = 65/102 (63.73%), Postives = 78/102 (76.47%), Query Frame = -1
Query: 1103 AATGTVQKKRRRLNGDGDAEFKATSSRASTTSYIQLRSRRILVDHHRLNENRCLSPNLDHDDDVSCCSSNIGSSEKRIIQLPDLEDESMEVETSTHLNFRER 1408
            AAT  V+ KRRR N D + +       +STTSYIQLRSRRILVDH+  NEN+CLSP+ DH+DDV CCSS I S  KRII+LPDLEDES+EV++STH + RER
Sbjct:    4 AATEAVRNKRRRFNDDDEGQAAECKVTSSTTSYIQLRSRRILVDHYPRNENQCLSPSSDHEDDVPCCSSIISSCGKRIIELPDLEDESIEVKSSTHFSSRER 105          

HSP 2 Score: 69.707 bits (169), Expect = 4.229e-10
Identity = 47/128 (36.72%), Postives = 58/128 (45.31%), Query Frame = -3
Query:  492 RRETTPSSELRAEPEALDSTSRQSEANSRRRSTAEKMPTXXXXXXXXXXXXXXXXXXXXXKYXXXXXXXXXXXFSAVTTFLAT---KRQFQFSN*KRFFPPFLFTIFRYNYDIVKDEPLKGRYQWVRL 866
            RRETTP SELRA PE +DSTSR S  NSRRRS  EKMPT                                   + +  F      K + QF+              +YNYDI+KD+ ++GRY+W RL
Sbjct:  105 RRETTPLSELRAGPEDMDSTSRPSGGNSRRRSMVEKMPT----------------------------------EAELEEFFVVAEEKLRNQFAE-------------KYNYDILKDQLVEGRYEWARL 185          
BLAST of g.barbadense_cottongen_reftransV1_0097428 vs. ExPASy TrEMBL
Match: A0A0D2VKX6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G105400 PE=4 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 4.594e-24
Identity = 45/71 (63.38%), Postives = 51/71 (71.83%), Query Frame = -1
Query: 1244 MELSDVGLRTRAMA--AATGTVQKKRRRLNGDGDAEFKATSSRASTTSYIQLRSRRILVDHHRLNENRCLS 1450
            MEL DVG+RT AMA  +AT  V+ KRRR N D + E       +STTSYIQLRSRRILVDHH  NEN+CLS
Sbjct:    1 MELDDVGVRTIAMAEESATEAVRNKRRRFNDDDEGEAAECKVTSSTTSYIQLRSRRILVDHHPRNENQCLS 71          

HSP 2 Score: 57.7658 bits (138), Expect = 4.594e-24
Identity = 28/46 (60.87%), Postives = 32/46 (69.57%), Query Frame = -2
Query: 1108 ALTWIMMMTCRAVQAISDQARKGLSNCQIWRMKAWKLKHPRI*TSE 1245
            +L   MMMTC  VQA+S +A KGLSN QI RM A KL HPRI  +E
Sbjct:   71 SLARTMMMTCHVVQALSARAEKGLSNGQIRRMGALKLNHPRISATE 116          

HSP 3 Score: 82.4185 bits (202), Expect = 3.501e-14
Identity = 52/133 (39.10%), Postives = 63/133 (47.37%), Query Frame = -3
Query:  492 SVNSSRRETTPSSELRAEPEALDSTSRQSEANSRRRSTAEKMPTXXXXXXXXXXXXXXXXXXXXXKYXXXXXXXXXXXFSAVTTFLAT---KRQFQFSN*KRFFPPFLFTIFRYNYDIVKDEPLKGRYQWVRL 881
            + NSSRRETTP SELRAEPE +D TSR S  NSRRRS  EKMPT                                   + +  F      K + QF+              +YNYDI+KD+PL+GRY+W RL
Sbjct:  117 TANSSRRETTPLSELRAEPEDMDPTSRPSGGNSRRRSMVEKMPT----------------------------------EAELEEFFVVAEEKLRNQFAE-------------KYNYDILKDQPLEGRYEWARL 202          
BLAST of g.barbadense_cottongen_reftransV1_0097428 vs. ExPASy TrEMBL
Match: D7SVZ0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0031g00800 PE=4 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.662e-14
Identity = 57/126 (45.24%), Postives = 68/126 (53.97%), Query Frame = -3
Query:  492 SRRETTPSSELRAEPEALDSTSRQSEANSRRRSTAEKMPTXXXXXXXXXXXXXXXXXXXXXKYXXXXXXXXXXXFSAVTTFLATKRQFQFSN*KRFFPPFLFTIFRYNYDIVKDEPLKGRYQWVRL 869
            SRRETTPSSELRAE + L+ST+R SEAN R RST EKMP+E+ELEE                                  F A ++  Q    KRF         +YNYDIVKD P++GRY+WVRL
Sbjct:  129 SRRETTPSSELRAESDDLESTARPSEANYRHRSTVEKMPSESELEE---------------------------------FFAAAEKDVQ----KRFSE-------KYNYDIVKDVPMEGRYEWVRL 210          
BLAST of g.barbadense_cottongen_reftransV1_0097428 vs. ExPASy TrEMBL
Match: V4SJT0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026517mg PE=4 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 2.433e-8
Identity = 56/128 (43.75%), Postives = 67/128 (52.34%), Query Frame = -1
Query: 1103 MELSDVGLRTRAMAAATGTVQK------KRRRLNGDGDAEFKATSSRASTTSYIQLRSRRILVDHHRLNENRCLSPNL---DHDD-DVSCCSSNIGSSEKRIIQLPDLEDES--MEVETSTHLNFRER 1450
            ME++ VG+RTR  A A            KRR+L  D    F          SYIQLR+R I        ENRC SP L   DHD    SCCSS+ GSSE+  I+  DL+DES  +E ETST+   RER
Sbjct:    1 MEVARVGVRTRTRARAEALAAATSSKLAKRRKLECDEVKSF---------ASYIQLRNRTIDTGEKTTTENRCSSPGLELSDHDRVSTSCCSSH-GSSER--IEFVDLKDESADVEAETSTYYGCRER 116          
BLAST of g.barbadense_cottongen_reftransV1_0097428 vs. ExPASy TrEMBL
Match: V4SEU6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026517mg PE=4 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 3.203e-8
Identity = 56/128 (43.75%), Postives = 67/128 (52.34%), Query Frame = -1
Query: 1103 MELSDVGLRTRAMAAATGTVQK------KRRRLNGDGDAEFKATSSRASTTSYIQLRSRRILVDHHRLNENRCLSPNL---DHDD-DVSCCSSNIGSSEKRIIQLPDLEDES--MEVETSTHLNFRER 1450
            ME++ VG+RTR  A A            KRR+L  D    F          SYIQLR+R I        ENRC SP L   DHD    SCCSS+ GSSE+  I+  DL+DES  +E ETST+   RER
Sbjct:    1 MEVARVGVRTRTRARAEALAAATSSKLAKRRKLECDEVKSF---------ASYIQLRNRTIDTGEKTTTENRCSSPGLELSDHDRVSTSCCSSH-GSSER--IEFVDLKDESADVEAETSTYYGCRER 116          
BLAST of g.barbadense_cottongen_reftransV1_0097428 vs. ExPASy TrEMBL
Match: V4SPQ2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026517mg PE=4 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 3.614e-8
Identity = 56/128 (43.75%), Postives = 67/128 (52.34%), Query Frame = -1
Query: 1103 MELSDVGLRTRAMAAATGTVQK------KRRRLNGDGDAEFKATSSRASTTSYIQLRSRRILVDHHRLNENRCLSPNL---DHDD-DVSCCSSNIGSSEKRIIQLPDLEDES--MEVETSTHLNFRER 1450
            ME++ VG+RTR  A A            KRR+L  D    F          SYIQLR+R I        ENRC SP L   DHD    SCCSS+ GSSE+  I+  DL+DES  +E ETST+   RER
Sbjct:    1 MEVARVGVRTRTRARAEALAAATSSKLAKRRKLECDEVKSF---------ASYIQLRNRTIDTGEKTTTENRCSSPGLELSDHDRVSTSCCSSH-GSSER--IEFVDLKDESADVEAETSTYYGCRER 116          
BLAST of g.barbadense_cottongen_reftransV1_0097428 vs. ExPASy TrEMBL
Match: A0A067GVE0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g028829mg PE=4 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 3.672e-8
Identity = 56/128 (43.75%), Postives = 67/128 (52.34%), Query Frame = -1
Query: 1103 MELSDVGLRTRAMAAATGTVQK------KRRRLNGDGDAEFKATSSRASTTSYIQLRSRRILVDHHRLNENRCLSPNL---DHDD-DVSCCSSNIGSSEKRIIQLPDLEDES--MEVETSTHLNFRER 1450
            ME++ VG+RTR  A A            KRR+L  D    F          SYIQLR+R I        ENRC SP L   DHD    SCCSS+ GSSE+  I+  DL+DES  +E ETST+   RER
Sbjct:    1 MEVARVGVRTRTRARAEALAAATSSKLAKRRKLECDEVKSF---------ASYIQLRNRTIDTGEKTSTENRCSSPGLELSDHDRVSTSCCSSH-GSSER--IEFVDLKDESADVEAETSTYYGCRER 116          
BLAST of g.barbadense_cottongen_reftransV1_0097428 vs. ExPASy TrEMBL
Match: A0A067GI18_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g028829mg PE=4 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 4.915e-8
Identity = 56/128 (43.75%), Postives = 67/128 (52.34%), Query Frame = -1
Query: 1103 MELSDVGLRTRAMAAATGTVQK------KRRRLNGDGDAEFKATSSRASTTSYIQLRSRRILVDHHRLNENRCLSPNL---DHDD-DVSCCSSNIGSSEKRIIQLPDLEDES--MEVETSTHLNFRER 1450
            ME++ VG+RTR  A A            KRR+L  D    F          SYIQLR+R I        ENRC SP L   DHD    SCCSS+ GSSE+  I+  DL+DES  +E ETST+   RER
Sbjct:    1 MEVARVGVRTRTRARAEALAAATSSKLAKRRKLECDEVKSF---------ASYIQLRNRTIDTGEKTSTENRCSSPGLELSDHDRVSTSCCSSH-GSSER--IEFVDLKDESADVEAETSTYYGCRER 116          
BLAST of g.barbadense_cottongen_reftransV1_0097428 vs. ExPASy TrEMBL
Match: A0A067GKS2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g028829mg PE=4 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 5.801e-8
Identity = 56/128 (43.75%), Postives = 67/128 (52.34%), Query Frame = -1
Query: 1103 MELSDVGLRTRAMAAATGTVQK------KRRRLNGDGDAEFKATSSRASTTSYIQLRSRRILVDHHRLNENRCLSPNL---DHDD-DVSCCSSNIGSSEKRIIQLPDLEDES--MEVETSTHLNFRER 1450
            ME++ VG+RTR  A A            KRR+L  D    F          SYIQLR+R I        ENRC SP L   DHD    SCCSS+ GSSE+  I+  DL+DES  +E ETST+   RER
Sbjct:    1 MEVARVGVRTRTRARAEALAAATSSKLAKRRKLECDEVKSF---------ASYIQLRNRTIDTGEKTSTENRCSSPGLELSDHDRVSTSCCSSH-GSSER--IEFVDLKDESADVEAETSTYYGCRER 116          
The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0097428 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of g.barbadense_cottongen_reftransV1_0097428 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 20
Match NameE-valueIdentityDescription
A0A0B0N2U9_GOSAR1.598e-4171.97Cyclin-dependent kinase inhibitor 6-like protein O... [more]
A0A0B0P7D1_GOSAR2.870e-3163.73Cyclin-dependent kinase inhibitor 6-like protein O... [more]
A0A0D2VKX6_GOSRA4.594e-2463.38Uncharacterized protein OS=Gossypium raimondii GN=... [more]
D7SVZ0_VITVI8.662e-1445.24Putative uncharacterized protein OS=Vitis vinifera... [more]
V4SJT0_9ROSI2.433e-843.75Uncharacterized protein OS=Citrus clementina GN=CI... [more]
V4SEU6_9ROSI3.203e-843.75Uncharacterized protein OS=Citrus clementina GN=CI... [more]
V4SPQ2_9ROSI3.614e-843.75Uncharacterized protein OS=Citrus clementina GN=CI... [more]
A0A067GVE0_CITSI3.672e-843.75Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]
A0A067GI18_CITSI4.915e-843.75Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]
A0A067GKS2_CITSI5.801e-843.75Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]

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Sequences
The following sequences are available for this feature:

contig sequence

>g.barbadense_cottongen_reftransV1_0097428 ID=g.barbadense_cottongen_reftransV1_0097428; Name=g.barbadense_cottongen_reftransV1_0097428; organism=Gossypium barbadense; type=contig; length=2026bp
AAGAAAAAAAAAAAAAAAAAACAAATGACTTCAAACTGACGAAAAAAAAG
CGGTGATCGTACCGAAGAAAGCAGAAGTAGCAGACATTAGCAGATTCAGG
AGAAACAGAAACGAATTTTAGGGCTAAAAATTTTCTAAAACTAGCAAGAA
TATACGGGAATTTGGTTGTTTAATAACTGTTTTTTTTTTCTGAGGTTCTT
CCCCCAGCTGAAATTCAATTTCTTTTCGTGGAAAGAAGCTTTCTCAGTTC
TCTCTCCGTCTAAAATAATAACAGACCAATTAAGAGCTTATCTCTTCTTC
TTTCTTCTCCGTTATTAATCATTGTCTCATTCTGTACATAAAATAGAAAC
CCTAAAATTTAGTAAAATTTTAAATCAGTAGTACCTATGAGATATCGCCT
GGTTGCTCTCTTGGTTTTCTTCTAAAAATGTGTTCCTTGTTTTTTCTTTT
CCTTTTTCTGGCTTGATTTTGGCGTTTTTCTTTCATGAATTTAATCGAAC
CCACTGGTAACGTCCTTTCAACGGTTCGTCCTTGACGATATCGTAGTTAT
ACCTGAAAATAGTAAACAAAAAAGGGGGAAAAAATCTTTTTCAGTTTGAA
AATTGAAATTGCCGTTTGGTTGCTAAGAAAGTTGTAACAGCAGAAAAGAA
AGTCTAGGTTTTGAAGAAATGTGCATGAAAATACTTTTCCGCGAACTGTT
CTTTAACTTTTTTCTCAGCAGCAGCAAAGAATTCTTCAAGTTCAGCTTCG
GTTGGCATCTTCTCCGCCGTTGATCTACGGCGAGAGTTCGCCTCTGATTG
CCGCGACGTTGAATCCAGTGCTTCTGGTTCAGCTCGGAGCTCACTCGACG
GTGTCGTTTCTCTCCTGCTAGAATTCACCGATGAGACAGAGAAGAGCTAA
ATAATTTGAGAGAAGAATGTATATGAAGGATAGATAAAATCAAGCGGAGA
AAAGAAAATTTAAAAATTTAACTAACCGGCTGCTTTTGAAATTCGAATTC
AAGAGACGTGACTTATCAGTAACTTAAACAGTACTATTAAAATAAAAGGA
ATTGATAAATTTGTACATTTTATTATTATATTGTAAGGGATAATTATACA
GACCTTTCTCTGAAGTTTAAATGCGTGGATGTTTCAACTTCCATGCTTTC
ATCCTCCAGATCTGGCAATTGGATAATCCTTTTCTCGCTTGATCCGATAT
TGCTTGAACAGCACGACACGTCATCATCATGATCCAAGTTAGGGCTCAAA
CATCGATTTTCATTGAGCCGATGATGATCCACCAAAATTCTCCGGCTTCG
TAACTGAATATACGACGTCGTTGAGGCCCTTGAAGAAGTTGCTTTGAATT
CAGCATCTCCGTCGCCGTTTAATCTTCTGCGTTTCTTCTGAACTGTTCCT
GTGGCCGCCGCCATGGCTCGTGTTCGAAGTCCGACGTCAGAGAGCTCCAT
AACTGCGATTTCTCCAAATTTTCTACACTTTCTCCTCATAATTAAAAAGG
AAATAAAAAAATTTCTTGATCTGTCTTTTTAGAGAGAGAGCGCGAGAGAA
ATAATTGGTATTTGTTGGTTGTGAGCGTTCGTTTTCTGGTTTTTGGTAGT
TTCTGGTGAAATGATGATGGTGATGATGAGAGAATGGGTGGATTCTTTGA
ACGGTGAGGATTTGTTATGCGATTTTAAAGGGGGATGGTTGGGGGTGACC
GGTGGTCCAGTTAACAGCGACGGGGAATCAGTAACGGGGTAGTTTGACGG
CGCCGTAACGCGGATCTGGGAAATGTAAGCGAATGCGCCGAATTCAGACT
AATTAGATAATGCCACGCAGATTAACACCCACGTGGGTGGTAAGGACTTC
CAATAACAGGAGGGTAATGTTTGGGTAAGTCCGTTTGGATTTTGTGTGTA
ATTTTATTGTTGGATTTAAGTACTACTTTTTTCGTATAAATTGTAGTGTT
TTTACCCTGATCTCTATCATTACCACAAACTTCTTTTACGAATAAAATTT
TCCATACAGTTGAGTATTACATTAAT
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