g.barbadense_cottongen_reftransV1_0097428, g.barbadense_cottongen_reftransV1_0097428 (contig) Gossypium barbadense
Overview
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0097428 vs. ExPASy TrEMBL
Match: A0A0B0N2U9_GOSAR (Cyclin-dependent kinase inhibitor 6-like protein OS=Gossypium arboreum GN=F383_33251 PE=4 SV=1) HSP 1 Score: 160.229 bits (404), Expect = 1.598e-41 Identity = 95/132 (71.97%), Postives = 106/132 (80.30%), Query Frame = -1 Query: 1103 MRRKCRKFGEIAVMELSDVGLRTRAMAAATGTVQKKRRRLNGDGDAEF---KATSSRASTTSYIQLRSRRILVDHHRLNENRCLSPNLDHDDDVSCCSSNIGSSEKRIIQLPDLEDESMEVETSTHLNFRER 1489 MRRKCR GEIAVMEL+DV +TRA+A TG+VQKKRRRLN DG+ E K TSS STTSYIQLRSR IL D HR + NRCLS N DHDDDVSCCSSNI SS+KRI++LPDLEDES+EVETSTH + ER Sbjct: 1 MRRKCRTIGEIAVMELADVRDQTRAVAT-TGSVQKKRRRLN-DGNEEEECRKVTSSTTSTTSYIQLRSRTILADRHRRDSNRCLSLNSDHDDDVSCCSSNIESSDKRIMELPDLEDESIEVETSTHFSSSER 130 HSP 2 Score: 87.0409 bits (214), Expect = 1.002e-15 Identity = 55/134 (41.04%), Postives = 67/134 (50.00%), Query Frame = -3 Query: 492 SSVNSSRRETTPSSELRAEPEALDSTSRQSEANSRRRSTAEKMPTXXXXXXXXXXXXXXXXXXXXXKYXXXXXXXXXXXFSAVTTFLA---TKRQFQFSN*KRFFPPFLFTIFRYNYDIVKDEPLKGRYQWVRL 884 + +SS RETTP +ELRAEPE LDSTSR SE NSR RST EKMPT + + F A K Q QF++ +YN+DIVKDEPL+GRY+W+RL Sbjct: 123 THFSSSERETTPLNELRAEPEDLDSTSRPSETNSRHRSTVEKMPT----------------------------------EAELEEFFAPAEEKLQKQFAD-------------KYNFDIVKDEPLEGRYEWIRL 209
BLAST of g.barbadense_cottongen_reftransV1_0097428 vs. ExPASy TrEMBL
Match: A0A0B0P7D1_GOSAR (Cyclin-dependent kinase inhibitor 6-like protein OS=Gossypium arboreum GN=F383_26380 PE=4 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 2.870e-31 Identity = 65/102 (63.73%), Postives = 78/102 (76.47%), Query Frame = -1 Query: 1103 AATGTVQKKRRRLNGDGDAEFKATSSRASTTSYIQLRSRRILVDHHRLNENRCLSPNLDHDDDVSCCSSNIGSSEKRIIQLPDLEDESMEVETSTHLNFRER 1408 AAT V+ KRRR N D + + +STTSYIQLRSRRILVDH+ NEN+CLSP+ DH+DDV CCSS I S KRII+LPDLEDES+EV++STH + RER Sbjct: 4 AATEAVRNKRRRFNDDDEGQAAECKVTSSTTSYIQLRSRRILVDHYPRNENQCLSPSSDHEDDVPCCSSIISSCGKRIIELPDLEDESIEVKSSTHFSSRER 105 HSP 2 Score: 69.707 bits (169), Expect = 4.229e-10 Identity = 47/128 (36.72%), Postives = 58/128 (45.31%), Query Frame = -3 Query: 492 RRETTPSSELRAEPEALDSTSRQSEANSRRRSTAEKMPTXXXXXXXXXXXXXXXXXXXXXKYXXXXXXXXXXXFSAVTTFLAT---KRQFQFSN*KRFFPPFLFTIFRYNYDIVKDEPLKGRYQWVRL 866 RRETTP SELRA PE +DSTSR S NSRRRS EKMPT + + F K + QF+ +YNYDI+KD+ ++GRY+W RL Sbjct: 105 RRETTPLSELRAGPEDMDSTSRPSGGNSRRRSMVEKMPT----------------------------------EAELEEFFVVAEEKLRNQFAE-------------KYNYDILKDQLVEGRYEWARL 185
BLAST of g.barbadense_cottongen_reftransV1_0097428 vs. ExPASy TrEMBL
Match: A0A0D2VKX6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G105400 PE=4 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 4.594e-24 Identity = 45/71 (63.38%), Postives = 51/71 (71.83%), Query Frame = -1 Query: 1244 MELSDVGLRTRAMA--AATGTVQKKRRRLNGDGDAEFKATSSRASTTSYIQLRSRRILVDHHRLNENRCLS 1450 MEL DVG+RT AMA +AT V+ KRRR N D + E +STTSYIQLRSRRILVDHH NEN+CLS Sbjct: 1 MELDDVGVRTIAMAEESATEAVRNKRRRFNDDDEGEAAECKVTSSTTSYIQLRSRRILVDHHPRNENQCLS 71 HSP 2 Score: 57.7658 bits (138), Expect = 4.594e-24 Identity = 28/46 (60.87%), Postives = 32/46 (69.57%), Query Frame = -2 Query: 1108 ALTWIMMMTCRAVQAISDQARKGLSNCQIWRMKAWKLKHPRI*TSE 1245 +L MMMTC VQA+S +A KGLSN QI RM A KL HPRI +E Sbjct: 71 SLARTMMMTCHVVQALSARAEKGLSNGQIRRMGALKLNHPRISATE 116 HSP 3 Score: 82.4185 bits (202), Expect = 3.501e-14 Identity = 52/133 (39.10%), Postives = 63/133 (47.37%), Query Frame = -3 Query: 492 SVNSSRRETTPSSELRAEPEALDSTSRQSEANSRRRSTAEKMPTXXXXXXXXXXXXXXXXXXXXXKYXXXXXXXXXXXFSAVTTFLAT---KRQFQFSN*KRFFPPFLFTIFRYNYDIVKDEPLKGRYQWVRL 881 + NSSRRETTP SELRAEPE +D TSR S NSRRRS EKMPT + + F K + QF+ +YNYDI+KD+PL+GRY+W RL Sbjct: 117 TANSSRRETTPLSELRAEPEDMDPTSRPSGGNSRRRSMVEKMPT----------------------------------EAELEEFFVVAEEKLRNQFAE-------------KYNYDILKDQPLEGRYEWARL 202
BLAST of g.barbadense_cottongen_reftransV1_0097428 vs. ExPASy TrEMBL
Match: D7SVZ0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0031g00800 PE=4 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 8.662e-14 Identity = 57/126 (45.24%), Postives = 68/126 (53.97%), Query Frame = -3 Query: 492 SRRETTPSSELRAEPEALDSTSRQSEANSRRRSTAEKMPTXXXXXXXXXXXXXXXXXXXXXKYXXXXXXXXXXXFSAVTTFLATKRQFQFSN*KRFFPPFLFTIFRYNYDIVKDEPLKGRYQWVRL 869 SRRETTPSSELRAE + L+ST+R SEAN R RST EKMP+E+ELEE F A ++ Q KRF +YNYDIVKD P++GRY+WVRL Sbjct: 129 SRRETTPSSELRAESDDLESTARPSEANYRHRSTVEKMPSESELEE---------------------------------FFAAAEKDVQ----KRFSE-------KYNYDIVKDVPMEGRYEWVRL 210
BLAST of g.barbadense_cottongen_reftransV1_0097428 vs. ExPASy TrEMBL
Match: V4SJT0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026517mg PE=4 SV=1) HSP 1 Score: 64.3142 bits (155), Expect = 2.433e-8 Identity = 56/128 (43.75%), Postives = 67/128 (52.34%), Query Frame = -1 Query: 1103 MELSDVGLRTRAMAAATGTVQK------KRRRLNGDGDAEFKATSSRASTTSYIQLRSRRILVDHHRLNENRCLSPNL---DHDD-DVSCCSSNIGSSEKRIIQLPDLEDES--MEVETSTHLNFRER 1450 ME++ VG+RTR A A KRR+L D F SYIQLR+R I ENRC SP L DHD SCCSS+ GSSE+ I+ DL+DES +E ETST+ RER Sbjct: 1 MEVARVGVRTRTRARAEALAAATSSKLAKRRKLECDEVKSF---------ASYIQLRNRTIDTGEKTTTENRCSSPGLELSDHDRVSTSCCSSH-GSSER--IEFVDLKDESADVEAETSTYYGCRER 116
BLAST of g.barbadense_cottongen_reftransV1_0097428 vs. ExPASy TrEMBL
Match: V4SEU6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026517mg PE=4 SV=1) HSP 1 Score: 63.929 bits (154), Expect = 3.203e-8 Identity = 56/128 (43.75%), Postives = 67/128 (52.34%), Query Frame = -1 Query: 1103 MELSDVGLRTRAMAAATGTVQK------KRRRLNGDGDAEFKATSSRASTTSYIQLRSRRILVDHHRLNENRCLSPNL---DHDD-DVSCCSSNIGSSEKRIIQLPDLEDES--MEVETSTHLNFRER 1450 ME++ VG+RTR A A KRR+L D F SYIQLR+R I ENRC SP L DHD SCCSS+ GSSE+ I+ DL+DES +E ETST+ RER Sbjct: 1 MEVARVGVRTRTRARAEALAAATSSKLAKRRKLECDEVKSF---------ASYIQLRNRTIDTGEKTTTENRCSSPGLELSDHDRVSTSCCSSH-GSSER--IEFVDLKDESADVEAETSTYYGCRER 116
BLAST of g.barbadense_cottongen_reftransV1_0097428 vs. ExPASy TrEMBL
Match: V4SPQ2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026517mg PE=4 SV=1) HSP 1 Score: 63.929 bits (154), Expect = 3.614e-8 Identity = 56/128 (43.75%), Postives = 67/128 (52.34%), Query Frame = -1 Query: 1103 MELSDVGLRTRAMAAATGTVQK------KRRRLNGDGDAEFKATSSRASTTSYIQLRSRRILVDHHRLNENRCLSPNL---DHDD-DVSCCSSNIGSSEKRIIQLPDLEDES--MEVETSTHLNFRER 1450 ME++ VG+RTR A A KRR+L D F SYIQLR+R I ENRC SP L DHD SCCSS+ GSSE+ I+ DL+DES +E ETST+ RER Sbjct: 1 MEVARVGVRTRTRARAEALAAATSSKLAKRRKLECDEVKSF---------ASYIQLRNRTIDTGEKTTTENRCSSPGLELSDHDRVSTSCCSSH-GSSER--IEFVDLKDESADVEAETSTYYGCRER 116
BLAST of g.barbadense_cottongen_reftransV1_0097428 vs. ExPASy TrEMBL
Match: A0A067GVE0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g028829mg PE=4 SV=1) HSP 1 Score: 63.5438 bits (153), Expect = 3.672e-8 Identity = 56/128 (43.75%), Postives = 67/128 (52.34%), Query Frame = -1 Query: 1103 MELSDVGLRTRAMAAATGTVQK------KRRRLNGDGDAEFKATSSRASTTSYIQLRSRRILVDHHRLNENRCLSPNL---DHDD-DVSCCSSNIGSSEKRIIQLPDLEDES--MEVETSTHLNFRER 1450 ME++ VG+RTR A A KRR+L D F SYIQLR+R I ENRC SP L DHD SCCSS+ GSSE+ I+ DL+DES +E ETST+ RER Sbjct: 1 MEVARVGVRTRTRARAEALAAATSSKLAKRRKLECDEVKSF---------ASYIQLRNRTIDTGEKTSTENRCSSPGLELSDHDRVSTSCCSSH-GSSER--IEFVDLKDESADVEAETSTYYGCRER 116
BLAST of g.barbadense_cottongen_reftransV1_0097428 vs. ExPASy TrEMBL
Match: A0A067GI18_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g028829mg PE=4 SV=1) HSP 1 Score: 63.1586 bits (152), Expect = 4.915e-8 Identity = 56/128 (43.75%), Postives = 67/128 (52.34%), Query Frame = -1 Query: 1103 MELSDVGLRTRAMAAATGTVQK------KRRRLNGDGDAEFKATSSRASTTSYIQLRSRRILVDHHRLNENRCLSPNL---DHDD-DVSCCSSNIGSSEKRIIQLPDLEDES--MEVETSTHLNFRER 1450 ME++ VG+RTR A A KRR+L D F SYIQLR+R I ENRC SP L DHD SCCSS+ GSSE+ I+ DL+DES +E ETST+ RER Sbjct: 1 MEVARVGVRTRTRARAEALAAATSSKLAKRRKLECDEVKSF---------ASYIQLRNRTIDTGEKTSTENRCSSPGLELSDHDRVSTSCCSSH-GSSER--IEFVDLKDESADVEAETSTYYGCRER 116
BLAST of g.barbadense_cottongen_reftransV1_0097428 vs. ExPASy TrEMBL
Match: A0A067GKS2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g028829mg PE=4 SV=1) HSP 1 Score: 63.1586 bits (152), Expect = 5.801e-8 Identity = 56/128 (43.75%), Postives = 67/128 (52.34%), Query Frame = -1 Query: 1103 MELSDVGLRTRAMAAATGTVQK------KRRRLNGDGDAEFKATSSRASTTSYIQLRSRRILVDHHRLNENRCLSPNL---DHDD-DVSCCSSNIGSSEKRIIQLPDLEDES--MEVETSTHLNFRER 1450 ME++ VG+RTR A A KRR+L D F SYIQLR+R I ENRC SP L DHD SCCSS+ GSSE+ I+ DL+DES +E ETST+ RER Sbjct: 1 MEVARVGVRTRTRARAEALAAATSSKLAKRRKLECDEVKSF---------ASYIQLRNRTIDTGEKTSTENRCSSPGLELSDHDRVSTSCCSSH-GSSER--IEFVDLKDESADVEAETSTYYGCRER 116 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0097428 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 0
BLAST of g.barbadense_cottongen_reftransV1_0097428 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 20
Pagesback to topSequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0097428 ID=g.barbadense_cottongen_reftransV1_0097428; Name=g.barbadense_cottongen_reftransV1_0097428; organism=Gossypium barbadense; type=contig; length=2026bpback to top |