g.barbadense_cottongen_reftransV1_0097403, g.barbadense_cottongen_reftransV1_0097403 (contig) Gossypium barbadense

Overview


Name	g.barbadense_cottongen_reftransV1_0097403
Unique Name	g.barbadense_cottongen_reftransV1_0097403
Type	contig
Organism	Gossypium barbadense (Sea Island cotton)
Sequence length	1917

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Dt02	chromosome	g.barbadense_cottongen_reftransV1_0097403:1..1917 . Dt02:48783005..48786506 +

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium barbadense CottonGen RefTrans V1	2016-11-01
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot	2016-11-01
InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1	2016-11-02
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL	2016-11-02

Homology

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BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy Swiss-Prot
Match: RN165_HUMAN (RING finger protein 165 OS=Homo sapiens GN=RNF165 PE=1 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 2.319e-7
Identity = 23/47 (48.94%), Postives = 32/47 (68.09%), Query Frame = -1

Query:  451 QECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNI 591
            ++C ICLS  EDG D+  LPC H FH  C+ +WL M+  CP+C+ +I
Sbjct:  292 EKCTICLSMLEDGEDVRRLPCMHLFHQLCVDQWLAMSKKCPICRVDI 338

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BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy Swiss-Prot
Match: RN165_MOUSE (RING finger protein 165 OS=Mus musculus GN=Rnf165 PE=2 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 2.521e-7
Identity = 23/47 (48.94%), Postives = 32/47 (68.09%), Query Frame = -1

Query:  451 QECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNI 591
            ++C ICLS  EDG D+  LPC H FH  C+ +WL M+  CP+C+ +I
Sbjct:  293 EKCTICLSMLEDGEDVRRLPCMHLFHQLCVDQWLAMSKKCPICRVDI 339

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BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy Swiss-Prot
Match: ZNRF3_XENTR (E3 ubiquitin-protein ligase ZNRF3 OS=Xenopus tropicalis GN=znrf3 PE=1 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 3.193e-7
Identity = 23/47 (48.94%), Postives = 30/47 (63.83%), Query Frame = -1

Query:  445 CCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNILK 585
            C ICL  Y DG +L  +PC H FH  C+  WL  N TCP C++NI++
Sbjct:  266 CAICLEKYIDGEELRVIPCTHRFHKRCVDPWLLQNHTCPHCRHNIIE 312

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BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy Swiss-Prot
Match: RN181_DROME (E3 ubiquitin-protein ligase RNF181 homolog OS=Drosophila melanogaster GN=CG7694 PE=2 SV=1)

HSP 1 Score: 53.9138 bits (128), Expect = 3.726e-7
Identity = 21/46 (45.65%), Postives = 27/46 (58.70%), Query Frame = -1

Query:  451 ECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNI 588
            EC +C    E+G     LPC H FH  CI+ WLK   +CPLC+Y +
Sbjct:   69 ECSVCKEPAEEGQKYRILPCKHEFHEECILLWLKKTNSCPLCRYEL 114

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BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy Swiss-Prot
Match: RNF43_MOUSE (E3 ubiquitin-protein ligase RNF43 OS=Mus musculus GN=Rnf43 PE=2 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 3.902e-7
Identity = 22/49 (44.90%), Postives = 32/49 (65.31%), Query Frame = -1

Query:  439 CCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGN 585
            C ICL  + +G +L  + C H FH TC+  WL  + TCPLC +NI++G+
Sbjct:  272 CAICLEEFSEGQELRVISCLHEFHRTCVDPWLYQHRTCPLCMFNIVEGD 320

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BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy Swiss-Prot
Match: RF12A_XENLA (E3 ubiquitin-protein ligase RNF12-A OS=Xenopus laevis GN=rnf12-a PE=1 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 4.237e-7
Identity = 21/49 (42.86%), Postives = 33/49 (67.35%), Query Frame = -1

Query:  448 LQECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNIL 594
            L+ C +C++ Y +G  L  LPC+H +H  CI +WL  N+TCP+C+  +L
Sbjct:  565 LKTCSVCITEYTEGNKLRKLPCSHEYHIHCIDRWLSENSTCPICRRAVL 613

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BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy Swiss-Prot
Match: ZNRF3_MOUSE (E3 ubiquitin-protein ligase ZNRF3 OS=Mus musculus GN=Znrf3 PE=1 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 4.642e-7
Identity = 25/52 (48.08%), Postives = 33/52 (63.46%), Query Frame = -1

Query:  439 ECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNIL--KGN 588
            +C ICL  Y DG +L  +PC H FH  C+  WL  + TCP C++NI+  KGN
Sbjct:  289 DCAICLEKYIDGEELRVIPCTHRFHRKCVDPWLLQHHTCPHCRHNIIEQKGN 340

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BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy Swiss-Prot
Match: RNF44_DANRE (RING finger protein 44 OS=Danio rerio GN=rnf44 PE=2 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 4.996e-7
Identity = 22/42 (52.38%), Postives = 28/42 (66.67%), Query Frame = -1

Query:  460 CCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCK 585
            C +C S +E    L  LPCNH FH+ C+ KWLK N TCP+C+
Sbjct:  396 CVVCFSDFESRQLLRVLPCNHEFHAKCVDKWLKTNRTCPICR 437

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BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy Swiss-Prot
Match: RN122_HUMAN (RING finger protein 122 OS=Homo sapiens GN=RNF122 PE=2 SV=2)

HSP 1 Score: 53.5286 bits (127), Expect = 5.621e-7
Identity = 23/57 (40.35%), Postives = 33/57 (57.89%), Query Frame = -1

Query:  436 LFLFLQECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNE 606
            L L+ Q C +CL  ++   +L  LPC H FH  C+VKWL++   CP+C   I   +E
Sbjct:   86 LQLYGQTCAVCLEDFKGKDELGVLPCQHAFHRKCLVKWLEVRCVCPMCNKPIASPSE 142

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BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy Swiss-Prot
Match: RN181_XENTR (E3 ubiquitin-protein ligase RNF181 OS=Xenopus tropicalis GN=rnf181 PE=2 SV=1)

HSP 1 Score: 53.5286 bits (127), Expect = 6.018e-7
Identity = 20/45 (44.44%), Postives = 30/45 (66.67%), Query Frame = -1

Query:  451 CCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNI 585
            C +CL  +E+G  +  LPC H FHS+CI+ WL    +CPLC++ +
Sbjct:   79 CPVCLLEFEEGETVRQLPCEHLFHSSCILPWLGKTNSCPLCRHEL 123

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BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy TrEMBL
Match: A0A0D2NDG7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G157000 PE=4 SV=1)

HSP 1 Score: 535.798 bits (1379), Expect = 0.000e+0
Identity = 293/295 (99.32%), Postives = 294/295 (99.66%), Query Frame = -2

Query:  705 MAASDPHAPLLRPRQPDGSAARPVSLAHLLGRATGRRGASMLVXXXXXXXXXXXXADWGYSKPVVALDMLWNTAFVVVSVVMLISTADETPNTPIRLWICAYALQCLLHVVLVWLEYRRRNSRRISVTDEERGEAVSGDVNDSEDEEDSGLFGSNESSITKRCETVNTMASFLWWIVGFYWVVSGGDILLQNAPRLYWLXXXXXXXXXXXXXFCVVLACLIGIALFCCLPCIIAILYAITEQEGASEADLSILPKYRFQIINNREKPSLGAGKMIPIETSSGYLANERILLPEDA 1589
            MAASDPHAPLLRPRQPDGSAARPVSLAHLLGRATGRRGASMLVRETAARELEERRADWGYSKPVVALDMLWNTAFVVVSVVMLISTADETPNTPIRLWICAYALQCLLHVVLVWLEYRRRNSRRISVTDEERGEAVSGDVNDSEDEEDSGLFGSNESSITKRCETVNTMASFLWWIVGFYWVVSGGDILLQNAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIAL CCLPCIIAILYAITEQEGASEADLSILPKY+FQIINNREKPSLGAGKMIPIETSSGYLANERILLPEDA
Sbjct:    1 MAASDPHAPLLRPRQPDGSAARPVSLAHLLGRATGRRGASMLVRETAARELEERRADWGYSKPVVALDMLWNTAFVVVSVVMLISTADETPNTPIRLWICAYALQCLLHVVLVWLEYRRRNSRRISVTDEERGEAVSGDVNDSEDEEDSGLFGSNESSITKRCETVNTMASFLWWIVGFYWVVSGGDILLQNAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAITEQEGASEADLSILPKYKFQIINNREKPSLGAGKMIPIETSSGYLANERILLPEDA 295

HSP 2 Score: 117.857 bits (294), Expect = 2.049e-25
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = -1

Query:  430 ECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV 588
            ECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV
Sbjct:  296 ECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV 348

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BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy TrEMBL
Match: A0A061EFM2_THECC (Zinc finger, C3HC4 type (RING finger) family protein isoform 1 OS=Theobroma cacao GN=TCM_011052 PE=4 SV=1)

HSP 1 Score: 457.603 bits (1176), Expect = 6.247e-153
Identity = 253/296 (85.47%), Postives = 265/296 (89.53%), Query Frame = -2

Query:  705 ASDPHAPLLRPRQPDGSAARPVSLAHLLGRATGRRGASMLVXXXXXXXXXXXXADWGYSKPVVALDMLWNTAFVVVSVVMLISTADETPNTPIRLWICAYALQCLLHVVLVWLEYRRRNSRRISVTDEERGEAVSGDVNDSEDEEDS---GLFGSNESSITKRCETVNTMASFLWWIVGFYWVVSGGDILLQNAPRLYWLXXXXXXXXXXXXXFCVVLACLIGIALFCCLPCIIAILYAITEQEGASEADLSILPKYRFQIINNREKPSLGAGKMIPIETSSGYLANERILLPEDA 1583
            ASD HAPLLRPRQPD SAARP +LA LLGRATGRRGASMLVRETAARELEERRADWGYSKPVVALDMLWNTAFV VSV MLI T DE  NTPIRLWIC YALQCL+HVVLVWLEYRRRN RR S  DEERG+A SGD NDSEDE+D      FGSN+SS+TKRCE+VNTM SFLWWIVGFYWVVSGG+ LLQNAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIAL CCLPCIIAILYA+  QEGASEADLSILPKYRFQIINN  K S+GAGKM+P+ETSSGYLANERILLPEDA
Sbjct:   13 ASDSHAPLLRPRQPDASAARPATLALLLGRATGRRGASMLVRETAARELEERRADWGYSKPVVALDMLWNTAFVAVSVAMLICTVDERTNTPIRLWICGYALQCLVHVVLVWLEYRRRNVRRTSARDEERGDATSGDANDSEDEQDGIERSAFGSNQSSVTKRCESVNTMVSFLWWIVGFYWVVSGGNYLLQNAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASEADLSILPKYRFQIINNGGKASVGAGKMVPVETSSGYLANERILLPEDA 308

HSP 2 Score: 113.62 bits (283), Expect = 6.247e-153
Identity = 50/52 (96.15%), Postives = 50/52 (96.15%), Query Frame = -1

Query:  433 ECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQ 588
            ECCICLSSYEDG DLHALPCNHHFHS CIVKWLKMNATCPLCKYNILKGNEQ
Sbjct:  309 ECCICLSSYEDGADLHALPCNHHFHSACIVKWLKMNATCPLCKYNILKGNEQ 360

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BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy TrEMBL
Match: A0A0D2Q7U9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G172200 PE=4 SV=1)

HSP 1 Score: 410.609 bits (1054), Expect = 7.802e-139
Identity = 242/300 (80.67%), Postives = 263/300 (87.67%), Query Frame = -2

Query:  705 SSKATMAASDPHAPLLRPRQPDGSAARPVSLAHLLGRATGRRGASMLVXXXXXXXXXXXXADWGYSKPVVALDMLWNTAFVVVSVVMLISTADETPNTPIRLWICAYALQCLLHVVLVWLEYRRRNSRRISVTDEERGEAVSGDVNDSEDEEDSGLFGSNESSITKRCETVNTMASFLWWIVGFYWVVSGGDILLQNAPRLYWLXXXXXXXXXXXXXFCVVLACLIGIALFCCLPCIIAILYAITEQEGASEADLSILPKYRFQIINNREKPSLGAGKMIPIETSSGYLANERILLPEDA 1604
            S   T +ASDPHAPLLR RQ D SAAR  +LA LLGR TGRRGASMLVRETAARELEERRADWGYSKPVVALD+LWNTAFVVVSVVMLI T +E PNTP+R+WIC YALQC +HVVLVWLEY+RRN+RR S   EERGE    DV DSED+EDS     N+SS+TKRCE+VNT+ASF+WWIVGFYWV+SGG+ILLQ APRLYWLAVVFLAFDVFFAIFCVVLACLIGIAL CCLPCIIAILYA+  QEGASEADLSILPKYRFQIIN  EKPS+G GKM+P+ETSSGYLANERILLPEDA
Sbjct:    7 SDATTTSASDPHAPLLRSRQSDASAARSSALALLLGRVTGRRGASMLVRETAARELEERRADWGYSKPVVALDILWNTAFVVVSVVMLICTVNERPNTPVRVWICGYALQCSVHVVLVWLEYKRRNARRASGRGEERGE----DVTDSEDDEDS-----NQSSVTKRCESVNTLASFIWWIVGFYWVISGGNILLQQAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASEADLSILPKYRFQIINIGEKPSVGVGKMVPVETSSGYLANERILLPEDA 297

HSP 2 Score: 113.235 bits (282), Expect = 7.802e-139
Identity = 51/53 (96.23%), Postives = 51/53 (96.23%), Query Frame = -1

Query:  430 ECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV 588
            ECCICL SYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKG EQV
Sbjct:  298 ECCICLCSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGTEQV 350

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BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy TrEMBL
Match: A0A0D2R7R7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G172200 PE=4 SV=1)

HSP 1 Score: 418.313 bits (1074), Expect = 6.359e-138
Identity = 246/306 (80.39%), Postives = 267/306 (87.25%), Query Frame = -2

Query:  687 SSKATMAASDPHAPLLRPRQPDGSAARPVSLAHLLGRATGRRGASMLVXXXXXXXXXXXXADWGYSKPVVALDMLWNTAFVVVSVVMLISTADETPNTPIRLWICAYALQCLLHVVLVWLEYRRRNSRRISVTDEERGEAVSGDVNDSEDEEDSGLFGSNESSITKRCETVNTMASFLWWIVGFYWVVSGGDILLQNAPRLYWLXXXXXXXXXXXXXFCVVLACLIGIALFCCLPCIIAILYAITEQEGASEADLSILPKYRFQIINNREKPSLGAGKMIPIETSSGYLANERILLPEDAVSYNSI 1604
            S   T +ASDPHAPLLR RQ D SAAR  +LA LLGR TGRRGASMLVRETAARELEERRADWGYSKPVVALD+LWNTAFVVVSVVMLI T +E PNTP+R+WIC YALQC +HVVLVWLEY+RRN+RR S   EERGE    DV DSED+EDS     N+SS+TKRCE+VNT+ASF+WWIVGFYWV+SGG+ILLQ APRLYWLAVVFLAFDVFFAIFCVVLACLIGIAL CCLPCIIAILYA+  QEGASEADLSILPKYRFQIIN  EKPS+G GKM+P+ETSSGYLANERILLPEDAVSY  I
Sbjct:    7 SDATTTSASDPHAPLLRSRQSDASAARSSALALLLGRVTGRRGASMLVRETAARELEERRADWGYSKPVVALDILWNTAFVVVSVVMLICTVNERPNTPVRVWICGYALQCSVHVVLVWLEYKRRNARRASGRGEERGE----DVTDSEDDEDS-----NQSSVTKRCESVNTLASFIWWIVGFYWVISGGNILLQQAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASEADLSILPKYRFQIINIGEKPSVGVGKMVPVETSSGYLANERILLPEDAVSYGII 303

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BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy TrEMBL
Match: A0A067KPP8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04760 PE=4 SV=1)

HSP 1 Score: 402.905 bits (1034), Expect = 4.316e-135
Identity = 237/306 (77.45%), Postives = 257/306 (83.99%), Query Frame = -2

Query:  705 SKATMAASDPHAPLLRPRQ--PDGSAARPVSLAHLLGRATGRRGASMLVXXXXXXXXXXXXADWGYSKPVVALDMLWNTAFVVVSVVMLISTADETPNTPIRLWICAYALQCLLHVVLVWLEYRRRNSR--RISVTDEERGEAVSGDVNDSEDEEDSGLFGSNESS---ITKRCETVNTMASFLWWIVGFYWVVSGGDILLQNAPRLYWLXXXXXXXXXXXXXFCVVLACLIGIALFCCLPCIIAILYAITEQEGASEADLSILPKYRFQIINNREKPSLGAGKMIPIETSSGYLANERILLPEDA 1601
            + A  A S   APLL PRQ  P     RP SLA LLGRATGRRG SMLVRETAARELEERRADWGYSKPVVALDMLWNTAFVVVS+ MLI TADE PNTP+R+WIC YALQCL+HVVLVWLEYRRRNSR  R  +  + + E   G+V DSEDE+ S     + SS   +TKRCE+VNTMASFLWWIVGFYWVVSGGD+LLQNAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIAL CCLPCIIAILYA+  QEGASEADLSILPKYRFQ++ N EKP++GAGKM+PIETSSGYLANERILLPEDA
Sbjct:    8 TSAASAESGSRAPLLLPRQEPPSSPTVRPTSLAFLLGRATGRRGPSMLVRETAARELEERRADWGYSKPVVALDMLWNTAFVVVSITMLILTADEKPNTPVRIWICGYALQCLVHVVLVWLEYRRRNSRTGRDEMRRQRQQETEEGNV-DSEDEDSSDRGSGSFSSRSSVTKRCESVNTMASFLWWIVGFYWVVSGGDLLLQNAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASEADLSILPKYRFQMMVNEEKPTVGAGKMVPIETSSGYLANERILLPEDA 312

HSP 2 Score: 108.612 bits (270), Expect = 4.316e-135
Identity = 48/53 (90.57%), Postives = 49/53 (92.45%), Query Frame = -1

Query:  430 ECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV 588
            ECCICL  YEDG +LH LPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV
Sbjct:  313 ECCICLCPYEDGAELHTLPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV 365

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy TrEMBL
Match: B9SJ31_RICCO (Cleavage and polyadenylation specificity factor, putative OS=Ricinus communis GN=RCOM_0598050 PE=4 SV=1)

HSP 1 Score: 379.407 bits (973), Expect = 6.111e-128
Identity = 230/304 (75.66%), Postives = 244/304 (80.26%), Query Frame = -2

Query:  705 HAPLLRPRQPDGSAARPVSLAHLLGRATGRRGASMLVXXXXXXXXXXXXADWGYSKPVVALDMLWNTAFVVVSVVMLISTADETPNTPIRLWICAYALQCLLHVVLVWLEYRRRNSRRISVTDEER-------------GEAVSGDVNDSEDEE--DSGLFGSNESSITKRCETVNTMASFLWWIVGFYWVVSGGDILLQNAPRLYWLXXXXXXXXXXXXXFCVVLACLIGIALFCCLPCIIAILYAITEQEGASEADLSILPKYRFQIINNREKPSLGAGKMIPIETSSGYLANERILLPEDA 1571
            HAPLL PRQ    A R  SLA LLGR TGRRG SMLVRETAA ELEERRADWGYSKPVVALDM+WNTAFVVVS+ MLI +  E PNTPIR+WIC YALQCL+HVVLVW+EYRRRNS    V DEER              E   G+  DSEDE+  D     SN SS+ KRCE+VNTMASFLWWIVGFYWVVSGGD LLQNAP LYWLAVVFLAFDVFFAIFCVVLACLIGIAL CCLPCIIAILYA+  QEGASEADLSILPKYRFQ+    EKPS+GAGKM+PIETSSGYLANERILLPEDA
Sbjct:  612 HAPLLHPRQ---EAPRAASLAMLLGRVTGRRGPSMLVRETAALELEERRADWGYSKPVVALDMVWNTAFVVVSITMLILSVKEKPNTPIRIWICGYALQCLVHVVLVWIEYRRRNS--RRVRDEERQQQQQQQAEVEGQHEENEGENVDSEDEDGVDRASVTSNRSSVIKRCESVNTMASFLWWIVGFYWVVSGGDELLQNAPHLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASEADLSILPKYRFQLTVEEEKPSVGAGKMVPIETSSGYLANERILLPEDA 910

HSP 2 Score: 108.227 bits (269), Expect = 6.111e-128
Identity = 48/53 (90.57%), Postives = 49/53 (92.45%), Query Frame = -1

Query:  430 ECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV 588
            ECCICL  YEDG +LH LPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV
Sbjct:  911 ECCICLCPYEDGAELHTLPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV 963

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy TrEMBL
Match: V4U631_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10015731mg PE=4 SV=1)

HSP 1 Score: 371.703 bits (953), Expect = 1.458e-127
Identity = 225/294 (76.53%), Postives = 249/294 (84.69%), Query Frame = -2

Query:  705 HAPLLRPRQPDGS--AARPVSLAHLLGRATGR-RGASMLVXXXXXXXXXXXXADWGYSKPVVALDMLWNTAFVVVSVVMLISTADETPNTPIRLWICAYALQCLLHVVLVWLEYRRRNSRRISVTDEERGEAVSGDVNDSEDEEDSGLF--GSNESSITKRCETVNTMASFLWWIVGFYWVVSGGDILLQNAPRLYWLXXXXXXXXXXXXXFCVVLACLIGIALFCCLPCIIAILYAITEQEGASEADLSILPKYRFQIINNREKPSLGAGKMIPIETSSGYLANERILLPEDA 1571
            HAPLLRPR P  S  AARP +LA LLGRATGR  G SMLVRETAARELEERRADWGYSKPVVALD++WN+AFV+VS  MLI T +E P+T IRLWIC YALQCL+HVVLVW+EYRRRN+R     DE  GE V    NDSEDEE+ G+    S  +S TKRCE++NTMASFLWWIVGFYWVVSGGD+LLQ+APRLYWLAVVFLAFDVFFAIFCVVLACLIGIAL CCLPCIIAILYA+  QEGASEADLSILPKYRF++ NN EK  +GAGKM+PIET+ GY+ANERILLPEDA
Sbjct:   14 HAPLLRPRDPSVSPNAARPATLALLLGRATGRGHGPSMLVRETAARELEERRADWGYSKPVVALDIMWNSAFVIVSAAMLIITINERPSTRIRLWICGYALQCLVHVVLVWMEYRRRNTR-RVRDDEMGGEDVRDVNNDSEDEEEDGIVYRTSTRTSFTKRCESINTMASFLWWIVGFYWVVSGGDLLLQDAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASEADLSILPKYRFEVQNNDEKLGVGAGKMVPIETNGGYVANERILLPEDA 306

HSP 2 Score: 114.775 bits (286), Expect = 1.458e-127
Identity = 51/53 (96.23%), Postives = 52/53 (98.11%), Query Frame = -1

Query:  430 ECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV 588
            ECCICLSSYEDG +LHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV
Sbjct:  307 ECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV 359

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy TrEMBL
Match: A0A0D2QS55_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G330000 PE=4 SV=1)

HSP 1 Score: 376.326 bits (965), Expect = 6.962e-127
Identity = 211/308 (68.51%), Postives = 243/308 (78.90%), Query Frame = -2

Query:  705 FTSSSKATMAA--SDPHAPLLRPRQPDGSAARPVSLAHLLGRATGRRGASMLVXXXXXXXXXXXXADWGYSKPVVALDMLWNTAFVVVSVVMLISTADETPNTPIRLWICAYALQCLLHVVLVWLEYRRRNSRRISVTDEERGEAVSGDVNDSEDEEDS---GLFGSNESSITKRCETVNTMASFLWWIVGFYWVVSGGDILLQNAPRLYWLXXXXXXXXXXXXXFCVVLACLIGIALFCCLPCIIAILYAITEQEGASEADLSILPKYRFQIINNREKPSLGAGKMIPIETSSGYLANERILLPEDA 1613
            +++ + AT AA  SDPHAPLL PR  D ++   +++    GR   RRG  +L RE AARE EE+R D GYSK VVALDM+WN AFV +SVVML ST DE PNTPIRLW+C YAL C+LHVV V  EYR  N+R  S  DEERG+A +  VNDSEDEED     LFGSN+SS+ KRCE++NTM SFLW IVGFYWVVSGGDILLQNAPRLYWL VVFLAFDVFFA+ CVVLACLIGIAL CCLPCI+AILYA+ +QEGA+EADLS+L KYRFQIINN E P +GAGKM+P+E S GYLANE +LLPEDA
Sbjct:    5 YSTETPATPAAAPSDPHAPLLSPRHSDAASTAQLAMP---GR---RRGGPVLAREMAAREQEEQRVDCGYSKSVVALDMMWNAAFVALSVVMLPSTMDEKPNTPIRLWVCGYALLCMLHVVFVLWEYRWSNTRTTSAVDEERGDAAAEHVNDSEDEEDGIEMSLFGSNQSSVAKRCESLNTMVSFLWCIVGFYWVVSGGDILLQNAPRLYWLVVVFLAFDVFFAVICVVLACLIGIALCCCLPCIVAILYAVAKQEGAAEADLSVLMKYRFQIINNGEMPCVGAGKMVPVEMSGGYLANEHLLLPEDA 306

HSP 2 Score: 107.842 bits (268), Expect = 6.962e-127
Identity = 47/53 (88.68%), Postives = 51/53 (96.23%), Query Frame = -1

Query:  430 ECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV 588
            ECCICLSSYEDGVDLH+LPCNHHFHSTCI++WLK NATCPLCKYNILKGNE +
Sbjct:  307 ECCICLSSYEDGVDLHSLPCNHHFHSTCILRWLKTNATCPLCKYNILKGNEHL 359

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BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy TrEMBL
Match: A0A067F3U6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g018193mg PE=4 SV=1)

HSP 1 Score: 369.007 bits (946), Expect = 8.643e-127
Identity = 224/294 (76.19%), Postives = 247/294 (84.01%), Query Frame = -2

Query:  705 HAPLLRPRQPDGS--AARPVSLAHLLGRATGR-RGASMLVXXXXXXXXXXXXADWGYSKPVVALDMLWNTAFVVVSVVMLISTADETPNTPIRLWICAYALQCLLHVVLVWLEYRRRNSRRISVTDEERGEAVSGDVNDSEDEEDSGLF--GSNESSITKRCETVNTMASFLWWIVGFYWVVSGGDILLQNAPRLYWLXXXXXXXXXXXXXFCVVLACLIGIALFCCLPCIIAILYAITEQEGASEADLSILPKYRFQIINNREKPSLGAGKMIPIETSSGYLANERILLPEDA 1571
            HAPLLRPR P  S  AARP +LA LLGRATGR  G SMLVRETAARELEERRADWGYSKPVVALD++WN+AFV+VS  MLI T +E P+T IRLWIC YALQCL+HVVLVW+EYRRRN+R     DE  GE      NDSEDEE+ G+    S  +S TKRCE++NTMASFLWWIVGFYWVVSGGD+LLQ APRLYWLAVVFLAFDVFFAIFCVVLACLIGIAL CCLPCIIAILYA+  QEGASEADLSILPKYRF++ NN EK  +GAGKM+PIET+ GY+ANERILLPEDA
Sbjct:   14 HAPLLRPRDPSVSPNAARPATLALLLGRATGRGHGPSMLVRETAARELEERRADWGYSKPVVALDIMWNSAFVIVSAAMLIITINERPSTRIRLWICGYALQCLVHVVLVWMEYRRRNTR-RVRDDEMGGEDFRDVNNDSEDEEEDGIVYRTSTRTSFTKRCESINTMASFLWWIVGFYWVVSGGDLLLQAAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASEADLSILPKYRFEVQNNDEKLGVGAGKMVPIETNGGYVANERILLPEDA 306

HSP 2 Score: 114.775 bits (286), Expect = 8.643e-127
Identity = 51/53 (96.23%), Postives = 52/53 (98.11%), Query Frame = -1

Query:  430 ECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV 588
            ECCICLSSYEDG +LHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV
Sbjct:  307 ECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV 359

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy TrEMBL
Match: B9HJG7_POPTR (Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0008s13440g PE=4 SV=2)

HSP 1 Score: 373.629 bits (958), Expect = 1.986e-126
Identity = 215/294 (73.13%), Postives = 246/294 (83.67%), Query Frame = -2

Query:  705 SDPHAPLLRPRQ--PDGSAARPVSLAHLLGRATGRRGASMLVXXXXXXXXXXXXADWGYSKPVVALDMLWNTAFVVVSVVMLISTADETPNTPIRLWICAYALQCLLHVVLVWLEYRRRNSRRISVTDEERGEAVSGDVNDSEDEEDSGLFGSNESSITKRCETVNTMASFLWWIVGFYWVVSGGDILLQNAPRLYWLXXXXXXXXXXXXXFCVVLACLIGIALFCCLPCIIAILYAITEQEGASEADLSILPKYRFQIINNREKPSLGAGKMIPIETSSGYLANERILLPEDA 1580
            ++PHAPLLRPRQ  P    +R  +L+ LLGRATGRRG SMLVRETAAREL+ERRADWGYSKPVV+LDM+WN AFVVVSV ML+ T  E PNTPIR+WIC YALQCL+HVVLVWLEYRRRN+RR    + ++      +V +S++E+D   F S  SS+TKRCE+VNTM SFLWW+VGFYWVVSGGD+LLQNAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIAL CCLPCIIAILYA+  QEGASEADL  LPKY+FQ+I N EKP + AGKM+P+ETSS +L  ERILLPEDA
Sbjct:    5 NEPHAPLLRPRQDPPTSPTSRQTTLSALLGRATGRRGPSMLVRETAARELDERRADWGYSKPVVSLDMMWNAAFVVVSVTMLLVTVKERPNTPIRIWICGYALQCLVHVVLVWLEYRRRNTRRERDIESQQQSTEEENVPESDEEDDRASFISPRSSVTKRCESVNTMVSFLWWMVGFYWVVSGGDVLLQNAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASEADLIQLPKYKFQMIRNEEKPGIEAGKMVPVETSSRFLGTERILLPEDA 298

HSP 2 Score: 108.997 bits (271), Expect = 1.986e-126
Identity = 47/52 (90.38%), Postives = 50/52 (96.15%), Query Frame = -1

Query:  433 ECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQ 588
            ECCICLS YEDG +LHALPCNHHFH+TCIVKWLKMNATCPLCK+NILKGNEQ
Sbjct:  299 ECCICLSPYEDGAELHALPCNHHFHATCIVKWLKMNATCPLCKFNILKGNEQ 350

The following BLAST results are available for this feature:

BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy Swiss-Prot
BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy TrEMBL

BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 23


Match Name	E-value	Identity	Description
RN165_HUMAN	2.319e-7	48.94	RING finger protein 165 OS=Homo sapiens GN=RNF165 ...	[more]
RN165_MOUSE	2.521e-7	48.94	RING finger protein 165 OS=Mus musculus GN=Rnf165 ...	[more]
ZNRF3_XENTR	3.193e-7	48.94	E3 ubiquitin-protein ligase ZNRF3 OS=Xenopus tropi...	[more]
RN181_DROME	3.726e-7	45.65	E3 ubiquitin-protein ligase RNF181 homolog OS=Dros...	[more]
RNF43_MOUSE	3.902e-7	44.90	E3 ubiquitin-protein ligase RNF43 OS=Mus musculus ...	[more]
RF12A_XENLA	4.237e-7	42.86	E3 ubiquitin-protein ligase RNF12-A OS=Xenopus lae...	[more]
ZNRF3_MOUSE	4.642e-7	48.08	E3 ubiquitin-protein ligase ZNRF3 OS=Mus musculus ...	[more]
RNF44_DANRE	4.996e-7	52.38	RING finger protein 44 OS=Danio rerio GN=rnf44 PE=...	[more]
RN122_HUMAN	5.621e-7	40.35	RING finger protein 122 OS=Homo sapiens GN=RNF122 ...	[more]
RN181_XENTR	6.018e-7	44.44	E3 ubiquitin-protein ligase RNF181 OS=Xenopus trop...	[more]

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BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0D2NDG7_GOSRA	2.049e-25	99.32	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A061EFM2_THECC	6.247e-153	85.47	Zinc finger, C3HC4 type (RING finger) family prote...	[more]
A0A0D2Q7U9_GOSRA	7.802e-139	80.67	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2R7R7_GOSRA	6.359e-138	80.39	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A067KPP8_JATCU	4.316e-135	77.45	Uncharacterized protein OS=Jatropha curcas GN=JCGZ...	[more]
B9SJ31_RICCO	6.111e-128	75.66	Cleavage and polyadenylation specificity factor, p...	[more]
V4U631_9ROSI	1.458e-127	76.53	Uncharacterized protein OS=Citrus clementina GN=CI...	[more]
A0A0D2QS55_GOSRA	6.962e-127	68.51	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A067F3U6_CITSI	8.643e-127	76.19	Uncharacterized protein OS=Citrus sinensis GN=CISI...	[more]
B9HJG7_POPTR	1.986e-126	73.13	Zinc finger family protein OS=Populus trichocarpa ...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR14155:SF73	SUBFAMILY NOT NAMED	coord: 26..289
None	No IPR available	PANTHER	PTHR14155	RING FINGER DOMAIN-CONTAINING	coord: 26..289
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 87..108
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 214..219
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 195..213
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 9..17
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 139..194
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..25
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 26..86
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 220..249
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..8
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 120..138
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 250..324
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 18..25
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 109..119
None	No IPR available	SIGNALP_GRAM_NEGATIVE	SignalP-noTM	SignalP-noTM	coord: 1..25 score: 0.735
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..25 score: 0.639
None	No IPR available	SIGNALP_GRAM_POSITIVE	SignalP-TM	SignalP-TM	coord: 1..25 score: 0.631
None	No IPR available	TMHMM	TMhelix		coord: 231..262
None	No IPR available	TMHMM	TMhelix		coord: 194..216
None	No IPR available	TMHMM	TMhelix		coord: 86..108
None	No IPR available	TMHMM	TMhelix		coord: 118..140

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.barbadense_cottongen_reftransV1_0097403 ID=g.barbadense_cottongen_reftransV1_0097403; Name=g.barbadense_cottongen_reftransV1_0097403; organism=Gossypium barbadense; type=contig; length=1917bp
ATGTGATTTCAACTGAACAAAACAACCATATAGGAAATGCAATGTGAAGA
GGATATACCGTTTATGATTGGGAGGTAACATTGAATCACTGATGCAACAA
ACAAATATACAATAAGCCAGTAATCTTTCACTCTTACCAATTATAATGAA
GCAAATAAAATACTGATAACATTTGAAGCATGAAAACCATCTCTATTTTC
ATTAAAGACGGTGGAAAAACTCGCACAGGGAGGGCCCAGCCCCAGAGGAA
TCAGGTCAACCCCAAAAGGTCATTTAAACAAAAAAAAAATGAAGCTAAGA
ATGAATTACCGCATGTCGGTCTTCATAGTTCAGTTTCAGCTCTTCATAAC
TTCCGTTTTTTCTATACATACACAGCATCATCGACAACTTAATCTGACAA
TGTTCAAGGCTTGCTCTCCTGTTCTTTCATACTTGCTCATTTCCCTTCAA
AATATTGTACTTACAGAGAGGACACGTTGCATTCATCTTAAGCCATTTCA
CAATACACGTTGAATGAAAATGATGGTTGCAAGGGAGAGCATGAAGATCC
ACGCCATCTTCGTATGAGCTTAGACATATACAACATTCCTGCAAAAACAG
AAAAAGAAAACACGGGCAATTATAATAGCAAAGCAGTCATCTTAGAGAGT
CATATTTAGCAAAGCAATCACCCCAAAGGGGAGTCAGATAGAGTTGTAAC
TTACTGCATCCTCAGGTAAGAGTATGCGCTCATTTGCCAAGTATCCACTG
CTTGTTTCTATGGGGATCATTTTTCCAGCTCCCAAACTAGGCTTCTCACG
GTTGTTTATAATCTGAAATCTATATTTTGGAAGGATACTAAGATCTGCTT
CCGATGCACCTTCCTGCTCCGTAATAGCATAAAGAATTGCAATGATGCAC
GGCAAGCAGCAGAAGAGAGCAATCCCAATCAAACACGCCAAAACAACACA
AAAGATTGCAAAGAACACATCAAATGCCAGAAAAACCACAGCCAACCAGT
ACAACCGCGGGGCATTCTGCAGAAGGATATCACCACCAGAAACTACCCAA
TAGAAGCCGACTATCCACCAAAGAAATGATGCCATGGTATTCACTGTTTC
ACATCGTTTAGTTATACTTGATTCATTTGAACCAAAAAGACCGCTGTCTT
CTTCATCTTCACTATCATTAACATCCCCAGAAACTGCTTCTCCTCTCTCC
TCATCCGTAACGGATATTCTCCTACTGTTCCTTCGCCTGTATTCCAACCA
CACTAAAACAACATGAAGCAAGCACTGCAAAGCATAAGCACAGATCCATA
ATCTAATAGGAGTATTGGGCGTCTCATCCGCCGTACTTATCAACATCACT
ACCGACACCACCACGAACGCTGTATTCCACAGCATGTCCAGTGCCACAAC
GGGCTTCGAGTACCCCCAGTCGGCCCTCCGCTCCTCCAACTCACGTGCCG
CTGTCTCCCTAACCAGCATGGAAGCGCCACGCCGTCCCGTGGCTCGCCCC
AATAAATGCGCCAACGATACAGGGCGAGCAGCCGAGCCATCAGGTTGACG
CGGACGAAGGAGAGGCGCGTGAGGATCAGACGCCGCCATGGTTGCTTTGG
ATGAAGATGTGAACAAACAAACAAAAAGAAAACACCTTTTTGATTTCGGG
GTTTTCAGAAATCTGGGGAGAACTCACAAAGAGAAGAAACACATAATTGG
AGTATTAACATTAGCAAGAATAAAAACCATATTTGTTGAAAATAAGAAAA
AGAAGGGAACGTCTGGTTTGGATTAAAGAGTTTTCGGTTTAGAACGGAAC
TGCCGTCCTCACTGTCAATTAGATGCTTTTATTGATTTTTATTTTGTTTT
CTGTCGGATTCTGCTTTGCTCTATTATTTTTGTTTCCTGAAAAGATAAAA
ACAGTGTGTTATGTATG

Search form

g.barbadense_cottongen_reftransV1_0097403, g.barbadense_cottongen_reftransV1_0097403 (contig) Gossypium barbadense

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