g.barbadense_cottongen_reftransV1_0097403, g.barbadense_cottongen_reftransV1_0097403 (contig) Gossypium barbadense

Overview


Name	g.barbadense_cottongen_reftransV1_0097403
Unique Name	g.barbadense_cottongen_reftransV1_0097403
Type	contig
Organism	Gossypium barbadense (Sea Island cotton)
Sequence length	1917

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Dt02	chromosome	g.barbadense_cottongen_reftransV1_0097403:1..1917 . Dt02:48783005..48786506 +

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium barbadense CottonGen RefTrans V1	2016-11-01
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot	2016-11-01
InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1	2016-11-02
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL	2016-11-02

Homology

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BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy Swiss-Prot
Match: RIE1_ARATH (E3 ubiquitin protein ligase RIE1 OS=Arabidopsis thaliana GN=RIE1 PE=2 SV=1)

HSP 1 Score: 307.375 bits (786), Expect = 2.912e-106
Identity = 185/309 (59.87%), Postives = 213/309 (68.93%), Query Frame = -2

Query:  705 FTSSSKATMAASDPHAPLLRPRQPDGSA------ARPVSLAHLLGRATGRRGASMLVXXXXXXXXXXXXADWGYSKPVVALDMLWNTAFVVVSVVMLISTADETPNTPIRLWICAYALQCLLHVVLVWLEYRRRNSRRISVTDEERGEAVSGDVNDSEDEEDSGLFGSNESSITKRCETVNTMASFLWWIVGFYWVVSGGDILLQNAPRLYWLXXXXXXXXXXXXXFCVVLACLIGIALFCCLPCIIAILYAITEQEGASEADLSILPKYRFQIINNREKPSLGAGKMIPIETSSGYLANERILLPEDA 1613
             +S S  + AA D HAPLLRPR  DGS       ARP +LA LLGR TG R  SMLVRETAAR LEERR DWGYSKPVVA D+LWN A V+ S VML+ T +E PN PIR+WIC Y LQCL HVVLVW EY RRNS R +   E        D N   D E      S   S  KRCE++NT+ SF+WWI+GFYWVV GGD LL  AP LYWL+V+FLA DVFFA+FCVVLACL+GIAL CCLPCIIA+LYA+   EG SEA+L +LP Y+F+  ++ EK   G GKM+PI  +   LA ER LL EDA
Sbjct:    1 MSSYSSDSTAARDQHAPLLRPRH-DGSFSSSSSSARPTALAVLLGRITGHRAPSMLVRETAARALEERRIDWGYSKPVVAADILWNAALVLASAVMLVGTVEERPNEPIRVWICVYGLQCLFHVVLVWSEYWRRNSTRRARDLESYDHE---DYNIEYDYEQDSDDNSTTYSFVKRCESINTVISFIWWIIGFYWVVEGGDKLLGEAPNLYWLSVIFLAIDVFFAVFCVVLACLVGIALCCCLPCIIALLYAVAGTEGVSEAELGVLPLYKFKAFHSNEKNITGPGKMVPIPINGLCLATERTLLAEDA 305

HSP 2 Score: 102.064 bits (253), Expect = 2.912e-106
Identity = 45/50 (90.00%), Postives = 47/50 (94.00%), Query Frame = -1

Query:  439 ECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGN 588
            +CCICLSSYEDG +LHALPCNHHFHSTCIVKWLKM ATCPLCKYNILKG 
Sbjct:  306 DCCICLSSYEDGAELHALPCNHHFHSTCIVKWLKMRATCPLCKYNILKGT 355

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy Swiss-Prot
Match: RING4_ARATH (E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana GN=At4g11680 PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.392e-67
Identity = 144/304 (47.37%), Postives = 184/304 (60.53%), Query Frame = -2

Query:  705 TMAASDPHAPLLRPRQPDGSAARPVSLAHLLGRATGRRGASMLVXXXXXXXXXXXXADWGYSKPVVALDMLWNTAFVVVSVVMLISTADETPNTPIRLWICAYALQCLLHVVLVWLEYRRRNSRRISVTDEERGEAVSGDVNDSEDE-------EDSGLFGSNESSITKRCETVNTMASFLWWIVGFYWVVSGGDILLQNAPRLYWLXXXXXXXXXXXXXFCVVLACLIGIALFCCLPCIIAILYAITEQEGASEADLSILPKYRFQIINNREKPSLGAGKMIPIETSSGYLAN-ERILLPEDA 1592
            T++  +   P+ R  +  G       L H   R   R   SMLVRETAA +LEER++DW YSKPVV LD+LWN AFV + V +LI + DE PN P+R+W+  Y +QC LH+  V +EY     RR      E G   SG  N S  +       ED G      S+  K  E+ NTM SF+WWI+GFYWV +GG  L  ++P+LYWL ++FL FDVFF +FCV LAC+IG+A+ CCLPCIIAILYA+ +QEGAS+ D+  +PK+RF    N EK S   GK   I T  G  +  ER L PEDA
Sbjct:   46 TISVDEESNPIHRSARRQGLREAARFLRHAGSRRMMRE-PSMLVRETAAEQLEERQSDWAYSKPVVFLDILWNLAFVAIGVAVLILSRDEKPNMPLRVWVVGYGIQCWLHMACVCVEY----RRRRRRRHPEDGGG-SGLTNSSSQQYVSLAQLEDRG----ETSNPAKHLESANTMFSFIWWIIGFYWVSAGGQTLSSDSPQLYWLCIIFLGFDVFFVVFCVALACVIGLAVCCCLPCIIAILYAVADQEGASKNDIDQMPKFRFTKTGNVEKLS---GKARGIMTECGTDSPIERSLSPEDA 336

HSP 2 Score: 81.2629 bits (199), Expect = 1.392e-67
Identity = 36/48 (75.00%), Postives = 40/48 (83.33%), Query Frame = -1

Query:  445 ECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNILK 588
            ECCICL  YEDGV+L  LPCNHHFH TCI KWL +N+ CPLCK+NILK
Sbjct:  337 ECCICLCEYEDGVELRELPCNHHFHCTCIDKWLHINSRCPLCKFNILK 384

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy Swiss-Prot
Match: RING1_ARATH (E3 ubiquitin-protein ligase At1g12760 OS=Arabidopsis thaliana GN=At1g12760 PE=1 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 2.780e-66
Identity = 138/292 (47.26%), Postives = 181/292 (61.99%), Query Frame = -2

Query:  705 AHLLGRAT-GR--RGASMLVXXXXXXXXXXXXADWGYSKPVVALDMLWNTAFVVVSVVMLISTADETPNTPIRLWICAYALQCLLHVVLVWLEYRRRNSRRISVTDEE-----------------RGEAVSGDVNDSEDEEDSGLFGSNESSITKRCETVNTMASFLWWIVGFYWVVSGGDILLQNAPRLYWLXXXXXXXXXXXXXFCVVLACLIGIALFCCLPCIIAILYAITEQEGASEADLSILPKYRFQIIN--NREKPSLGAGKMIPIETSSGYLAN-ERILLPEDA 1511
            A  L RA+ GR  R  SMLVRE AA +LEER++DW YSKPVV LD++WN AFV V+  +L+ +  E P  P+R+W+  YALQC+LH+V V +EYRRRN RR + T                      EA+    N    +   G   +  SS+ K  E+ NTM SF+WWI+GFYWV +GG  L Q +PR+YWL++VFL FDVFF +FCV LAC+IGIA+ CCLPCIIA+LYA+ +QEGAS+ D+  L K++F+ +   N+       G    I T  G  +  E  LL EDA
Sbjct:   60 ARFLSRASSGRVMREPSMLVREAAAEQLEERQSDWAYSKPVVVLDIVWNLAFVSVATAILVMSRKEHPIMPLRVWLLGYALQCVLHMVCVCVEYRRRNRRRTNRTTTTTPPRSRSSSSSSSSSSLEEEALGSRRNSGVQDLSLGHLDTESSSVAKHLESANTMFSFIWWIIGFYWVSAGGQELAQESPRIYWLSIVFLGFDVFFVVFCVALACVIGIAVCCCLPCIIAVLYAVADQEGASKEDIEQLTKFKFRKLGDANKHTNDEAQGTTEGIMTECGTDSPIEHTLLQEDA 351

HSP 2 Score: 84.7297 bits (208), Expect = 2.780e-66
Identity = 36/50 (72.00%), Postives = 42/50 (84.00%), Query Frame = -1

Query:  439 ECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGN 588
            ECCICLS+YEDG +L  LPC HHFH +C+ KWL +NATCPLCKYNILK +
Sbjct:  352 ECCICLSAYEDGTELRELPCGHHFHCSCVDKWLYINATCPLCKYNILKSS 401

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BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy Swiss-Prot
Match: RING2_ARATH (E3 ubiquitin-protein ligase At1g63170 OS=Arabidopsis thaliana GN=At1g63170 PE=2 SV=2)

HSP 1 Score: 184.882 bits (468), Expect = 5.406e-63
Identity = 143/293 (48.81%), Postives = 186/293 (63.48%), Query Frame = -2

Query:  705 AHLLGRAT-GR---RGASMLVXXXXXXXXXXXXADWGYSKPVVALDMLWNTAFVVVSVVMLISTADETPNTPIRLWICAYALQCLLHVVLVWLEYRRRNSRRISVT---------------DEERGEAVSGDVNDSEDEEDSGLFGSNESSITKRCETVNTMASFLWWIVGFYWVVSGGDILLQNAPRLYWLXXXXXXXXXXXXXFCVVLACLIGIALFCCLPCIIAILYAITEQEGASEADLSILPKYRFQIINNREKPSL----GAGKMIPIETSSGYLANERILLP-EDA 1511
            A LL  A+ GR   R  SMLVRE AA +LEER++DW YSKPVV LD +WN AFVVV+  +L+ ++DE PN P+R+WI  Y LQC++H+V V +EYRRRNSRR                   DEE G  +S   N  E   + G   +  +S  K  E+ NTM SF+WW++GFYWV SGG  L Q +P+LYWL +VFL FDVFF +FCV LAC+IGIA+ CCLPCIIA+LYA+ EQEGAS+ D+  L K++F+ + +  K ++    G G    + T  G  +     LP EDA
Sbjct:   33 ARLLRHASSGRMMMREPSMLVREAAAEQLEERQSDWAYSKPVVVLDFVWNLAFVVVATAVLVLSSDENPNMPLRVWIIGYGLQCMMHMVCVCVEYRRRNSRRRRDLSPRSSSSSSSSSSSMDEEEGLGLSR--NSDERYLELGQLENENNSFAKHLESANTMISFIWWVIGFYWVSSGGQELAQGSPQLYWLCIVFLGFDVFFVVFCVALACVIGIAVCCCLPCIIAVLYAVAEQEGASKEDIDQLTKFKFRKVGDTMKHTVDEEQGQGDSGGVMTECGTDSPVEHALPHEDA 323

HSP 2 Score: 80.1073 bits (196), Expect = 5.406e-63
Identity = 35/50 (70.00%), Postives = 40/50 (80.00%), Query Frame = -1

Query:  439 ECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGN 588
            ECCICLS+YED  +L  LPC HHFH  C+ KWL +NATCPLCKYNILK +
Sbjct:  324 ECCICLSAYEDETELRELPCGHHFHCGCVDKWLYINATCPLCKYNILKSS 373

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BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy Swiss-Prot
Match: RNF12_MOUSE (E3 ubiquitin-protein ligase RLIM OS=Mus musculus GN=Rlim PE=1 SV=2)

HSP 1 Score: 58.9214 bits (141), Expect = 9.402e-8
Identity = 23/55 (41.82%), Postives = 36/55 (65.45%), Query Frame = -1

Query:  433 LQECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNIL-KGNEQ 594
            L+ C +C++ Y +G  L  LPC+H +H  CI +WL  N+TCP+C+  +L  GN +
Sbjct:  543 LKTCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICRRAVLSSGNRE 597

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BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy Swiss-Prot
Match: RNF12_HUMAN (E3 ubiquitin-protein ligase RLIM OS=Homo sapiens GN=RLIM PE=1 SV=3)

HSP 1 Score: 58.9214 bits (141), Expect = 1.058e-7
Identity = 23/55 (41.82%), Postives = 36/55 (65.45%), Query Frame = -1

Query:  433 LQECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNIL-KGNEQ 594
            L+ C +C++ Y +G  L  LPC+H +H  CI +WL  N+TCP+C+  +L  GN +
Sbjct:  567 LKTCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICRRAVLASGNRE 621

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BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy Swiss-Prot
Match: ZNRF3_XENLA (E3 ubiquitin-protein ligase ZNRF3 OS=Xenopus laevis GN=znrf3 PE=2 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 1.345e-7
Identity = 23/50 (46.00%), Postives = 32/50 (64.00%), Query Frame = -1

Query:  445 LQECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNILK 594
            + +C ICL  Y DG +L  +PC H FH  C+  WL  N TCP C++NI++
Sbjct:  199 ISDCAICLEKYIDGEELRVIPCTHRFHKRCVDPWLLQNHTCPHCRHNIIE 248

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy Swiss-Prot
Match: RNF12_XENTR (E3 ubiquitin-protein ligase RNF12 OS=Xenopus tropicalis GN=rnf12 PE=2 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 1.389e-7
Identity = 23/55 (41.82%), Postives = 36/55 (65.45%), Query Frame = -1

Query:  433 LQECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNIL-KGNEQ 594
            L+ C +C++ Y +G  L  LPC+H +H  CI +WL  N+TCP+C+  +L  GN +
Sbjct:  582 LKTCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICRRAVLVAGNRE 636

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy Swiss-Prot
Match: RNG1L_ARATH (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 1.677e-7
Identity = 17/48 (35.42%), Postives = 34/48 (70.83%), Query Frame = -1

Query:  451 LQECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNI 594
            + +C +C+  +EDG D+  +PC H FH  C++ WL+++ +CP+C++ +
Sbjct:  213 MNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELHNSCPVCRFEL 260

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy Swiss-Prot
Match: RF12B_XENLA (E3 ubiquitin-protein ligase RNF12-B OS=Xenopus laevis GN=rnf12-b PE=2 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 1.885e-7
Identity = 23/55 (41.82%), Postives = 36/55 (65.45%), Query Frame = -1

Query:  433 LQECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNIL-KGNEQ 594
            L+ C +C++ Y +G  L  LPC+H +H  CI +WL  N+TCP+C+  +L  GN +
Sbjct:  700 LKTCSVCITEYTEGNKLRKLPCSHEYHIHCIDRWLSENSTCPICRRAVLVAGNRE 754

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy TrEMBL
Match: Q9C9X1_ARATH (At1g68070 OS=Arabidopsis thaliana GN=T23K23.8 PE=1 SV=1)

HSP 1 Score: 343.199 bits (879), Expect = 3.143e-116
Identity = 202/300 (67.33%), Postives = 235/300 (78.33%), Query Frame = -2

Query:  705 SSKATMAASDPHAPLLRPRQPDGSAARPVSLAHLLGRATGRRGASMLVXXXXXXXXXXXXADWGYSKPVVALDMLWNTAFVVVSVVMLISTADETPNTPIRLWICAYALQCLLHVVLVWLEYRRRNSRRISVTDEERGEAVSGDVNDSEDEEDSGLFGSNESSITKRCETVNTMASFLWWIVGFYWVVSGGDILLQNAPRLYWLXXXXXXXXXXXXXFCVVLACLIGIALFCCLPCIIAILYAITEQEGASEADLSILPKYRFQIINNREKPSLGAGKMIPIETSSGYLANERILLPEDA 1604
            SS  + + SD   PLLR RQ   S  R   +A LL RA+GRRGASM+VRETAA+ELEERRADWGYSKPVVALDMLWNTAFV+V++VML+   +E PN PIR+WIC YA+QCL+HVVLVWLE+R+RN+R     D E  +A +    DSEDE++   F S     TK CE++NT+ SF+WWIVGFYW+VSGGDILLQNA  LYWL  VFLAFDVFFAIFCVVLACLIGIAL CCLPCIIA+LYA+  QEGASEADLSILPKYRF  +NN EK S G GKMIP++ +S  L NER+LLPEDA
Sbjct:    2 SSPESPSGSDSSTPLLRSRQ--SSPRRQPVIAVLLNRASGRRGASMVVRETAAQELEERRADWGYSKPVVALDMLWNTAFVLVAIVMLLVFKEEKPNVPIRIWICGYAIQCLVHVVLVWLEFRKRNARS-RPGDLEAAQATN---QDSEDEDNDERFLS-----TKTCESMNTIISFVWWIVGFYWLVSGGDILLQNATHLYWLTFVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIALLYAVAGQEGASEADLSILPKYRFHTMNNDEKQSDGGGKMIPVDAASENLGNERVLLPEDA 290

HSP 2 Score: 105.145 bits (261), Expect = 3.143e-116
Identity = 46/52 (88.46%), Postives = 50/52 (96.15%), Query Frame = -1

Query:  433 ECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQ 588
            +CCICLSSYEDG +L +LPCNHHFHSTCIVKWLKMNATCPLCK+NILKGNEQ
Sbjct:  291 DCCICLSSYEDGAELVSLPCNHHFHSTCIVKWLKMNATCPLCKFNILKGNEQ 342

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy TrEMBL
Match: D7KVS3_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_475916 PE=4 SV=1)

HSP 1 Score: 346.28 bits (887), Expect = 4.000e-116
Identity = 204/301 (67.77%), Postives = 234/301 (77.74%), Query Frame = -2

Query:  705 SSKATMAASDPHAPLLRPRQPDGSAARPVSLAHLLGRATGRRGASMLVXXXXXXXXXXXXADWGYSKPVVALDMLWNTAFVVVSVVMLISTADETPNTPIRLWICAYALQCLLHVVLVWLEYRRRNSRRISVTDEERGEAVSGDVN-DSEDEEDSGLFGSNESSITKRCETVNTMASFLWWIVGFYWVVSGGDILLQNAPRLYWLXXXXXXXXXXXXXFCVVLACLIGIALFCCLPCIIAILYAITEQEGASEADLSILPKYRFQIINNREKPSLGAGKMIPIETSSGYLANERILLPEDA 1604
            SS  + + SD   PLLR RQ   S  RP  +A LLGRA+GRRGASM+VRETAA+ELEERRADWGYSKPVVALDMLWNTAFVVV++VML+   +E PN PIR+WIC YA+QCL+HVVLVWLE+R+RN+R    T     EA  G  N DSEDE++     S     TK CE++NT+ SF+WWI GFYW+VSGGDILLQNA  LYWL  +FLAFDVFFAIFCVVLACLIGIAL CCLPCIIA+LYA+  QEGASEADLSILPKYRFQ +NN EK S G GKMIP+E  S  +  ER+LLPEDA
Sbjct:    2 SSPESPSGSDSSTPLLRSRQ--SSPRRPPVIAVLLGRASGRRGASMVVRETAAQELEERRADWGYSKPVVALDMLWNTAFVVVAIVMLLVFKEEKPNVPIRVWICGYAIQCLVHVVLVWLEFRKRNAR----TRTGDLEAAQGSGNHDSEDEDNDERILS-----TKTCESMNTIISFIWWIAGFYWLVSGGDILLQNATHLYWLTFIFLAFDVFFAIFCVVLACLIGIALCCCLPCIIALLYAVAGQEGASEADLSILPKYRFQALNNDEKQSDGGGKMIPVEAGSENMGKERVLLPEDA 291

HSP 2 Score: 102.064 bits (253), Expect = 4.000e-116
Identity = 45/52 (86.54%), Postives = 49/52 (94.23%), Query Frame = -1

Query:  433 ECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQ 588
            +CCICLSSYEDG +L +L CNHHFHSTCIVKWLKMNATCPLCK+NILKGNEQ
Sbjct:  292 DCCICLSSYEDGAELVSLSCNHHFHSTCIVKWLKMNATCPLCKFNILKGNEQ 343

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy TrEMBL
Match: Q8LG38_ARATH (Putative RING zinc finger protein OS=Arabidopsis thaliana PE=2 SV=1)

HSP 1 Score: 342.428 bits (877), Expect = 6.113e-116
Identity = 201/300 (67.00%), Postives = 235/300 (78.33%), Query Frame = -2

Query:  705 SSKATMAASDPHAPLLRPRQPDGSAARPVSLAHLLGRATGRRGASMLVXXXXXXXXXXXXADWGYSKPVVALDMLWNTAFVVVSVVMLISTADETPNTPIRLWICAYALQCLLHVVLVWLEYRRRNSRRISVTDEERGEAVSGDVNDSEDEEDSGLFGSNESSITKRCETVNTMASFLWWIVGFYWVVSGGDILLQNAPRLYWLXXXXXXXXXXXXXFCVVLACLIGIALFCCLPCIIAILYAITEQEGASEADLSILPKYRFQIINNREKPSLGAGKMIPIETSSGYLANERILLPEDA 1604
            SS  + + SD   PL+R RQ   S  R   +A LL RA+GRRGASM+VRETAA+ELEERRADWGYSKPVVALDMLWNTAFV+V++VML+   +E PN PIR+WIC YA+QCL+HVVLVWLE+R+RN+R     D E  +A +    DSEDE++   F S     TK CE++NT+ SF+WWIVGFYW+VSGGDILLQNA  LYWL  VFLAFDVFFAIFCVVLACLIGIAL CCLPCIIA+LYA+  QEGASEADLSILPKYRF  +NN EK S G GKMIP++ +S  L NER+LLPEDA
Sbjct:    2 SSPESPSGSDSSTPLIRSRQ--SSPRRQPVIAVLLNRASGRRGASMVVRETAAQELEERRADWGYSKPVVALDMLWNTAFVLVAIVMLLVFKEEKPNVPIRIWICGYAIQCLVHVVLVWLEFRKRNARS-RPGDLEAAQATN---QDSEDEDNDERFLS-----TKTCESMNTIISFVWWIVGFYWLVSGGDILLQNATHLYWLTFVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIALLYAVAGQEGASEADLSILPKYRFHTMNNDEKQSDGGGKMIPVDAASENLGNERVLLPEDA 290

HSP 2 Score: 105.145 bits (261), Expect = 6.113e-116
Identity = 46/52 (88.46%), Postives = 50/52 (96.15%), Query Frame = -1

Query:  433 ECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQ 588
            +CCICLSSYEDG +L +LPCNHHFHSTCIVKWLKMNATCPLCK+NILKGNEQ
Sbjct:  291 DCCICLSSYEDGAELVSLPCNHHFHSTCIVKWLKMNATCPLCKFNILKGNEQ 342

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy TrEMBL
Match: A0A087GLA0_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA6G009800 PE=4 SV=1)

HSP 1 Score: 342.428 bits (877), Expect = 2.778e-114
Identity = 201/300 (67.00%), Postives = 237/300 (79.00%), Query Frame = -2

Query:  705 SSKATMAASDPHAPLLRPRQPDGSAARPVSLAHLLGRATGRRGASMLVXXXXXXXXXXXXADWGYSKPVVALDMLWNTAFVVVSVVMLISTADETPNTPIRLWICAYALQCLLHVVLVWLEYRRRNSRRISVTDEERGEAVSGDVNDSEDEEDSGLFGSNESSITKRCETVNTMASFLWWIVGFYWVVSGGDILLQNAPRLYWLXXXXXXXXXXXXXFCVVLACLIGIALFCCLPCIIAILYAITEQEGASEADLSILPKYRFQIINNREKPSLGAGKMIPIETSSGYLANERILLPEDA 1604
            SS  +   SD   PLLR RQ   S  RP  +A LLGRATG+RGASMLVRETAA+ELE+RRADWGYSKPVVALDMLWNTAFV V+VVML+ + DE PN PIR+WIC YA+QCL+HVVLVW+E+R+RN+ R S  D E  +  SG+ +DS+D ++  L        TK CE++NT+ SF+WWIVGFYW+VSGG++LLQNA  LYWL  VFLAFDVFFAIFCVVLACLIGIAL CCLPCIIA+LYA+  QEGASEADLSILPKY+FQ++N+ EK S G GKMIP E  + Y  NER+LLPEDA
Sbjct:    2 SSPQSPTMSDSTTPLLRSRQ--SSPRRPPVIAVLLGRATGQRGASMLVRETAAQELEDRRADWGYSKPVVALDMLWNTAFVAVAVVMLLLSKDEKPNVPIRIWICGYAIQCLVHVVLVWIEFRKRNTIRPS-GDLEAAQG-SGNGSDSDDGDERVLS-------TKTCESMNTIISFIWWIVGFYWLVSGGELLLQNAMHLYWLTFVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIALLYAVAGQEGASEADLSILPKYKFQMMNDGEKQSDGGGKMIPAEAGTDYSGNERVLLPEDA 290

HSP 2 Score: 99.7525 bits (247), Expect = 2.778e-114
Identity = 44/52 (84.62%), Postives = 47/52 (90.38%), Query Frame = -1

Query:  433 ECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQ 588
            +CCICL SYEDG +L  LPCNHHFHS CIVKWLKMNATCPLCK+NILKGNEQ
Sbjct:  291 DCCICLCSYEDGAELVTLPCNHHFHSMCIVKWLKMNATCPLCKFNILKGNEQ 342

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BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy TrEMBL
Match: M1CVQ0_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG401029469 PE=4 SV=1)

HSP 1 Score: 328.561 bits (841), Expect = 1.200e-113
Identity = 208/309 (67.31%), Postives = 238/309 (77.02%), Query Frame = -2

Query:  705 SSSKATMAASDPHAPLLRPRQPDGS-AARPVSLAHLLGRATGRRG------ASMLVXXXXXXXXXXXXADWGYSKPVVALDMLWNTAFVVVSVVMLISTADETPNTPIRLWICAYALQCLLHVVLVWLEYRRRNSRRISVTDEERGEAVSGDVNDSEDEEDSGLFG-SNESSITKRCETVNTMASFLWWIVGFYWVVSGGDILLQNAPRLYWLXXXXXXXXXXXXXFCVVLACLIGIALFCCLPCIIAILYAITEQEGASEADLSILPKYRFQIINNREKPSLGAGKMIPIETSSGYLANERILLPEDA 1607
            ++   +M +SDP  PLL  R  +G    R  SLA LLGR TGRRG      AS+LVRETAAREL+ERRADWGYSKPVVALDM+WN  FV+VSVV+L    DE+PN PIR+WIC YALQC++HVVLVWLEYRRR+ +    TD E  + V G       EE +G+    N+SSI KRCE +NTM S LWWIVGFYW+VSGG+ILLQNAP LYWLAVVFLAFDVFFAIFCV LACLIG+AL CCLPCIIA+LYA+  QEGASE DL +LPKYRF I  N EKP +GAG+M+PIETSSGYLA ERILLPEDA
Sbjct:    2 ATEPPSMISSDPTTPLLHRRLENGGRGGRQSSLAVLLGRVTGRRGGGGGGGASLLVRETAARELDERRADWGYSKPVVALDMMWNLGFVIVSVVILSCAVDESPNVPIRVWICGYALQCVVHVVLVWLEYRRRSLQ--GGTDAEGNDGVDG-------EERNGVLAIGNQSSIAKRCEYMNTMGSLLWWIVGFYWIVSGGEILLQNAPHLYWLAVVFLAFDVFFAIFCVALACLIGVALCCCLPCIIAVLYAVG-QEGASEEDLRVLPKYRFHICKNEEKPRVGAGRMVPIETSSGYLATERILLPEDA 300

HSP 2 Score: 111.309 bits (277), Expect = 1.200e-113
Identity = 49/53 (92.45%), Postives = 52/53 (98.11%), Query Frame = -1

Query:  430 ECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV 588
            ECCICL+SYEDG +LHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGN+QV
Sbjct:  301 ECCICLTSYEDGAELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNDQV 353

The following BLAST results are available for this feature:

BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy Swiss-Prot
BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy TrEMBL

BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 23


Match Name	E-value	Identity	Description
RIE1_ARATH	2.912e-106	59.87	E3 ubiquitin protein ligase RIE1 OS=Arabidopsis th...	[more]
RING4_ARATH	1.392e-67	47.37	E3 ubiquitin-protein ligase At4g11680 OS=Arabidops...	[more]
RING1_ARATH	2.780e-66	47.26	E3 ubiquitin-protein ligase At1g12760 OS=Arabidops...	[more]
RING2_ARATH	5.406e-63	48.81	E3 ubiquitin-protein ligase At1g63170 OS=Arabidops...	[more]
RNF12_MOUSE	9.402e-8	41.82	E3 ubiquitin-protein ligase RLIM OS=Mus musculus G...	[more]
RNF12_HUMAN	1.058e-7	41.82	E3 ubiquitin-protein ligase RLIM OS=Homo sapiens G...	[more]
ZNRF3_XENLA	1.345e-7	46.00	E3 ubiquitin-protein ligase ZNRF3 OS=Xenopus laevi...	[more]
RNF12_XENTR	1.389e-7	41.82	E3 ubiquitin-protein ligase RNF12 OS=Xenopus tropi...	[more]
RNG1L_ARATH	1.677e-7	35.42	E3 ubiquitin-protein ligase RING1-like OS=Arabidop...	[more]
RF12B_XENLA	1.885e-7	41.82	E3 ubiquitin-protein ligase RNF12-B OS=Xenopus lae...	[more]

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BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
Q9C9X1_ARATH	3.143e-116	67.33	At1g68070 OS=Arabidopsis thaliana GN=T23K23.8 PE=1...	[more]
D7KVS3_ARALL	4.000e-116	67.77	Putative uncharacterized protein OS=Arabidopsis ly...	[more]
Q8LG38_ARATH	6.113e-116	67.00	Putative RING zinc finger protein OS=Arabidopsis t...	[more]
A0A087GLA0_ARAAL	2.778e-114	67.00	Uncharacterized protein OS=Arabis alpina GN=AALP_A...	[more]
M1CVQ0_SOLTU	1.200e-113	67.31	Uncharacterized protein OS=Solanum tuberosum GN=PG...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR14155:SF73	SUBFAMILY NOT NAMED	coord: 26..289
None	No IPR available	PANTHER	PTHR14155	RING FINGER DOMAIN-CONTAINING	coord: 26..289
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 87..108
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 214..219
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 195..213
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 9..17
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 139..194
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..25
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 26..86
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 220..249
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..8
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 120..138
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 250..324
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 18..25
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 109..119
None	No IPR available	SIGNALP_GRAM_NEGATIVE	SignalP-noTM	SignalP-noTM	coord: 1..25 score: 0.735
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..25 score: 0.639
None	No IPR available	SIGNALP_GRAM_POSITIVE	SignalP-TM	SignalP-TM	coord: 1..25 score: 0.631
None	No IPR available	TMHMM	TMhelix		coord: 231..262
None	No IPR available	TMHMM	TMhelix		coord: 194..216
None	No IPR available	TMHMM	TMhelix		coord: 86..108
None	No IPR available	TMHMM	TMhelix		coord: 118..140

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.barbadense_cottongen_reftransV1_0097403 ID=g.barbadense_cottongen_reftransV1_0097403; Name=g.barbadense_cottongen_reftransV1_0097403; organism=Gossypium barbadense; type=contig; length=1917bp
ATGTGATTTCAACTGAACAAAACAACCATATAGGAAATGCAATGTGAAGA
GGATATACCGTTTATGATTGGGAGGTAACATTGAATCACTGATGCAACAA
ACAAATATACAATAAGCCAGTAATCTTTCACTCTTACCAATTATAATGAA
GCAAATAAAATACTGATAACATTTGAAGCATGAAAACCATCTCTATTTTC
ATTAAAGACGGTGGAAAAACTCGCACAGGGAGGGCCCAGCCCCAGAGGAA
TCAGGTCAACCCCAAAAGGTCATTTAAACAAAAAAAAAATGAAGCTAAGA
ATGAATTACCGCATGTCGGTCTTCATAGTTCAGTTTCAGCTCTTCATAAC
TTCCGTTTTTTCTATACATACACAGCATCATCGACAACTTAATCTGACAA
TGTTCAAGGCTTGCTCTCCTGTTCTTTCATACTTGCTCATTTCCCTTCAA
AATATTGTACTTACAGAGAGGACACGTTGCATTCATCTTAAGCCATTTCA
CAATACACGTTGAATGAAAATGATGGTTGCAAGGGAGAGCATGAAGATCC
ACGCCATCTTCGTATGAGCTTAGACATATACAACATTCCTGCAAAAACAG
AAAAAGAAAACACGGGCAATTATAATAGCAAAGCAGTCATCTTAGAGAGT
CATATTTAGCAAAGCAATCACCCCAAAGGGGAGTCAGATAGAGTTGTAAC
TTACTGCATCCTCAGGTAAGAGTATGCGCTCATTTGCCAAGTATCCACTG
CTTGTTTCTATGGGGATCATTTTTCCAGCTCCCAAACTAGGCTTCTCACG
GTTGTTTATAATCTGAAATCTATATTTTGGAAGGATACTAAGATCTGCTT
CCGATGCACCTTCCTGCTCCGTAATAGCATAAAGAATTGCAATGATGCAC
GGCAAGCAGCAGAAGAGAGCAATCCCAATCAAACACGCCAAAACAACACA
AAAGATTGCAAAGAACACATCAAATGCCAGAAAAACCACAGCCAACCAGT
ACAACCGCGGGGCATTCTGCAGAAGGATATCACCACCAGAAACTACCCAA
TAGAAGCCGACTATCCACCAAAGAAATGATGCCATGGTATTCACTGTTTC
ACATCGTTTAGTTATACTTGATTCATTTGAACCAAAAAGACCGCTGTCTT
CTTCATCTTCACTATCATTAACATCCCCAGAAACTGCTTCTCCTCTCTCC
TCATCCGTAACGGATATTCTCCTACTGTTCCTTCGCCTGTATTCCAACCA
CACTAAAACAACATGAAGCAAGCACTGCAAAGCATAAGCACAGATCCATA
ATCTAATAGGAGTATTGGGCGTCTCATCCGCCGTACTTATCAACATCACT
ACCGACACCACCACGAACGCTGTATTCCACAGCATGTCCAGTGCCACAAC
GGGCTTCGAGTACCCCCAGTCGGCCCTCCGCTCCTCCAACTCACGTGCCG
CTGTCTCCCTAACCAGCATGGAAGCGCCACGCCGTCCCGTGGCTCGCCCC
AATAAATGCGCCAACGATACAGGGCGAGCAGCCGAGCCATCAGGTTGACG
CGGACGAAGGAGAGGCGCGTGAGGATCAGACGCCGCCATGGTTGCTTTGG
ATGAAGATGTGAACAAACAAACAAAAAGAAAACACCTTTTTGATTTCGGG
GTTTTCAGAAATCTGGGGAGAACTCACAAAGAGAAGAAACACATAATTGG
AGTATTAACATTAGCAAGAATAAAAACCATATTTGTTGAAAATAAGAAAA
AGAAGGGAACGTCTGGTTTGGATTAAAGAGTTTTCGGTTTAGAACGGAAC
TGCCGTCCTCACTGTCAATTAGATGCTTTTATTGATTTTTATTTTGTTTT
CTGTCGGATTCTGCTTTGCTCTATTATTTTTGTTTCCTGAAAAGATAAAA
ACAGTGTGTTATGTATG

Search form

g.barbadense_cottongen_reftransV1_0097403, g.barbadense_cottongen_reftransV1_0097403 (contig) Gossypium barbadense

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