g.barbadense_cottongen_reftransV1_0097403, g.barbadense_cottongen_reftransV1_0097403 (contig) Gossypium barbadense
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy Swiss-Prot
Match: RIE1_ARATH (E3 ubiquitin protein ligase RIE1 OS=Arabidopsis thaliana GN=RIE1 PE=2 SV=1) HSP 1 Score: 307.375 bits (786), Expect = 2.912e-106 Identity = 185/309 (59.87%), Postives = 213/309 (68.93%), Query Frame = -2 Query: 705 FTSSSKATMAASDPHAPLLRPRQPDGSA------ARPVSLAHLLGRATGRRGASMLVXXXXXXXXXXXXADWGYSKPVVALDMLWNTAFVVVSVVMLISTADETPNTPIRLWICAYALQCLLHVVLVWLEYRRRNSRRISVTDEERGEAVSGDVNDSEDEEDSGLFGSNESSITKRCETVNTMASFLWWIVGFYWVVSGGDILLQNAPRLYWLXXXXXXXXXXXXXFCVVLACLIGIALFCCLPCIIAILYAITEQEGASEADLSILPKYRFQIINNREKPSLGAGKMIPIETSSGYLANERILLPEDA 1613 +S S + AA D HAPLLRPR DGS ARP +LA LLGR TG R SMLVRETAAR LEERR DWGYSKPVVA D+LWN A V+ S VML+ T +E PN PIR+WIC Y LQCL HVVLVW EY RRNS R + E D N D E S S KRCE++NT+ SF+WWI+GFYWVV GGD LL AP LYWL+V+FLA DVFFA+FCVVLACL+GIAL CCLPCIIA+LYA+ EG SEA+L +LP Y+F+ ++ EK G GKM+PI + LA ER LL EDA Sbjct: 1 MSSYSSDSTAARDQHAPLLRPRH-DGSFSSSSSSARPTALAVLLGRITGHRAPSMLVRETAARALEERRIDWGYSKPVVAADILWNAALVLASAVMLVGTVEERPNEPIRVWICVYGLQCLFHVVLVWSEYWRRNSTRRARDLESYDHE---DYNIEYDYEQDSDDNSTTYSFVKRCESINTVISFIWWIIGFYWVVEGGDKLLGEAPNLYWLSVIFLAIDVFFAVFCVVLACLVGIALCCCLPCIIALLYAVAGTEGVSEAELGVLPLYKFKAFHSNEKNITGPGKMVPIPINGLCLATERTLLAEDA 305 HSP 2 Score: 102.064 bits (253), Expect = 2.912e-106 Identity = 45/50 (90.00%), Postives = 47/50 (94.00%), Query Frame = -1 Query: 439 ECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGN 588 +CCICLSSYEDG +LHALPCNHHFHSTCIVKWLKM ATCPLCKYNILKG Sbjct: 306 DCCICLSSYEDGAELHALPCNHHFHSTCIVKWLKMRATCPLCKYNILKGT 355
BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy Swiss-Prot
Match: RING4_ARATH (E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana GN=At4g11680 PE=2 SV=1) HSP 1 Score: 199.134 bits (505), Expect = 1.392e-67 Identity = 144/304 (47.37%), Postives = 184/304 (60.53%), Query Frame = -2 Query: 705 TMAASDPHAPLLRPRQPDGSAARPVSLAHLLGRATGRRGASMLVXXXXXXXXXXXXADWGYSKPVVALDMLWNTAFVVVSVVMLISTADETPNTPIRLWICAYALQCLLHVVLVWLEYRRRNSRRISVTDEERGEAVSGDVNDSEDE-------EDSGLFGSNESSITKRCETVNTMASFLWWIVGFYWVVSGGDILLQNAPRLYWLXXXXXXXXXXXXXFCVVLACLIGIALFCCLPCIIAILYAITEQEGASEADLSILPKYRFQIINNREKPSLGAGKMIPIETSSGYLAN-ERILLPEDA 1592 T++ + P+ R + G L H R R SMLVRETAA +LEER++DW YSKPVV LD+LWN AFV + V +LI + DE PN P+R+W+ Y +QC LH+ V +EY RR E G SG N S + ED G S+ K E+ NTM SF+WWI+GFYWV +GG L ++P+LYWL ++FL FDVFF +FCV LAC+IG+A+ CCLPCIIAILYA+ +QEGAS+ D+ +PK+RF N EK S GK I T G + ER L PEDA Sbjct: 46 TISVDEESNPIHRSARRQGLREAARFLRHAGSRRMMRE-PSMLVRETAAEQLEERQSDWAYSKPVVFLDILWNLAFVAIGVAVLILSRDEKPNMPLRVWVVGYGIQCWLHMACVCVEY----RRRRRRRHPEDGGG-SGLTNSSSQQYVSLAQLEDRG----ETSNPAKHLESANTMFSFIWWIIGFYWVSAGGQTLSSDSPQLYWLCIIFLGFDVFFVVFCVALACVIGLAVCCCLPCIIAILYAVADQEGASKNDIDQMPKFRFTKTGNVEKLS---GKARGIMTECGTDSPIERSLSPEDA 336 HSP 2 Score: 81.2629 bits (199), Expect = 1.392e-67 Identity = 36/48 (75.00%), Postives = 40/48 (83.33%), Query Frame = -1 Query: 445 ECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNILK 588 ECCICL YEDGV+L LPCNHHFH TCI KWL +N+ CPLCK+NILK Sbjct: 337 ECCICLCEYEDGVELRELPCNHHFHCTCIDKWLHINSRCPLCKFNILK 384
BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy Swiss-Prot
Match: RING1_ARATH (E3 ubiquitin-protein ligase At1g12760 OS=Arabidopsis thaliana GN=At1g12760 PE=1 SV=1) HSP 1 Score: 191.045 bits (484), Expect = 2.780e-66 Identity = 138/292 (47.26%), Postives = 181/292 (61.99%), Query Frame = -2 Query: 705 AHLLGRAT-GR--RGASMLVXXXXXXXXXXXXADWGYSKPVVALDMLWNTAFVVVSVVMLISTADETPNTPIRLWICAYALQCLLHVVLVWLEYRRRNSRRISVTDEE-----------------RGEAVSGDVNDSEDEEDSGLFGSNESSITKRCETVNTMASFLWWIVGFYWVVSGGDILLQNAPRLYWLXXXXXXXXXXXXXFCVVLACLIGIALFCCLPCIIAILYAITEQEGASEADLSILPKYRFQIIN--NREKPSLGAGKMIPIETSSGYLAN-ERILLPEDA 1511 A L RA+ GR R SMLVRE AA +LEER++DW YSKPVV LD++WN AFV V+ +L+ + E P P+R+W+ YALQC+LH+V V +EYRRRN RR + T EA+ N + G + SS+ K E+ NTM SF+WWI+GFYWV +GG L Q +PR+YWL++VFL FDVFF +FCV LAC+IGIA+ CCLPCIIA+LYA+ +QEGAS+ D+ L K++F+ + N+ G I T G + E LL EDA Sbjct: 60 ARFLSRASSGRVMREPSMLVREAAAEQLEERQSDWAYSKPVVVLDIVWNLAFVSVATAILVMSRKEHPIMPLRVWLLGYALQCVLHMVCVCVEYRRRNRRRTNRTTTTTPPRSRSSSSSSSSSSLEEEALGSRRNSGVQDLSLGHLDTESSSVAKHLESANTMFSFIWWIIGFYWVSAGGQELAQESPRIYWLSIVFLGFDVFFVVFCVALACVIGIAVCCCLPCIIAVLYAVADQEGASKEDIEQLTKFKFRKLGDANKHTNDEAQGTTEGIMTECGTDSPIEHTLLQEDA 351 HSP 2 Score: 84.7297 bits (208), Expect = 2.780e-66 Identity = 36/50 (72.00%), Postives = 42/50 (84.00%), Query Frame = -1 Query: 439 ECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGN 588 ECCICLS+YEDG +L LPC HHFH +C+ KWL +NATCPLCKYNILK + Sbjct: 352 ECCICLSAYEDGTELRELPCGHHFHCSCVDKWLYINATCPLCKYNILKSS 401
BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy Swiss-Prot
Match: RING2_ARATH (E3 ubiquitin-protein ligase At1g63170 OS=Arabidopsis thaliana GN=At1g63170 PE=2 SV=2) HSP 1 Score: 184.882 bits (468), Expect = 5.406e-63 Identity = 143/293 (48.81%), Postives = 186/293 (63.48%), Query Frame = -2 Query: 705 AHLLGRAT-GR---RGASMLVXXXXXXXXXXXXADWGYSKPVVALDMLWNTAFVVVSVVMLISTADETPNTPIRLWICAYALQCLLHVVLVWLEYRRRNSRRISVT---------------DEERGEAVSGDVNDSEDEEDSGLFGSNESSITKRCETVNTMASFLWWIVGFYWVVSGGDILLQNAPRLYWLXXXXXXXXXXXXXFCVVLACLIGIALFCCLPCIIAILYAITEQEGASEADLSILPKYRFQIINNREKPSL----GAGKMIPIETSSGYLANERILLP-EDA 1511 A LL A+ GR R SMLVRE AA +LEER++DW YSKPVV LD +WN AFVVV+ +L+ ++DE PN P+R+WI Y LQC++H+V V +EYRRRNSRR DEE G +S N E + G + +S K E+ NTM SF+WW++GFYWV SGG L Q +P+LYWL +VFL FDVFF +FCV LAC+IGIA+ CCLPCIIA+LYA+ EQEGAS+ D+ L K++F+ + + K ++ G G + T G + LP EDA Sbjct: 33 ARLLRHASSGRMMMREPSMLVREAAAEQLEERQSDWAYSKPVVVLDFVWNLAFVVVATAVLVLSSDENPNMPLRVWIIGYGLQCMMHMVCVCVEYRRRNSRRRRDLSPRSSSSSSSSSSSMDEEEGLGLSR--NSDERYLELGQLENENNSFAKHLESANTMISFIWWVIGFYWVSSGGQELAQGSPQLYWLCIVFLGFDVFFVVFCVALACVIGIAVCCCLPCIIAVLYAVAEQEGASKEDIDQLTKFKFRKVGDTMKHTVDEEQGQGDSGGVMTECGTDSPVEHALPHEDA 323 HSP 2 Score: 80.1073 bits (196), Expect = 5.406e-63 Identity = 35/50 (70.00%), Postives = 40/50 (80.00%), Query Frame = -1 Query: 439 ECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGN 588 ECCICLS+YED +L LPC HHFH C+ KWL +NATCPLCKYNILK + Sbjct: 324 ECCICLSAYEDETELRELPCGHHFHCGCVDKWLYINATCPLCKYNILKSS 373
BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy Swiss-Prot
Match: RNF12_MOUSE (E3 ubiquitin-protein ligase RLIM OS=Mus musculus GN=Rlim PE=1 SV=2) HSP 1 Score: 58.9214 bits (141), Expect = 9.402e-8 Identity = 23/55 (41.82%), Postives = 36/55 (65.45%), Query Frame = -1 Query: 433 LQECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNIL-KGNEQ 594 L+ C +C++ Y +G L LPC+H +H CI +WL N+TCP+C+ +L GN + Sbjct: 543 LKTCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICRRAVLSSGNRE 597
BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy Swiss-Prot
Match: RNF12_HUMAN (E3 ubiquitin-protein ligase RLIM OS=Homo sapiens GN=RLIM PE=1 SV=3) HSP 1 Score: 58.9214 bits (141), Expect = 1.058e-7 Identity = 23/55 (41.82%), Postives = 36/55 (65.45%), Query Frame = -1 Query: 433 LQECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNIL-KGNEQ 594 L+ C +C++ Y +G L LPC+H +H CI +WL N+TCP+C+ +L GN + Sbjct: 567 LKTCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICRRAVLASGNRE 621
BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy Swiss-Prot
Match: ZNRF3_XENLA (E3 ubiquitin-protein ligase ZNRF3 OS=Xenopus laevis GN=znrf3 PE=2 SV=1) HSP 1 Score: 58.5362 bits (140), Expect = 1.345e-7 Identity = 23/50 (46.00%), Postives = 32/50 (64.00%), Query Frame = -1 Query: 445 LQECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNILK 594 + +C ICL Y DG +L +PC H FH C+ WL N TCP C++NI++ Sbjct: 199 ISDCAICLEKYIDGEELRVIPCTHRFHKRCVDPWLLQNHTCPHCRHNIIE 248
BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy Swiss-Prot
Match: RNF12_XENTR (E3 ubiquitin-protein ligase RNF12 OS=Xenopus tropicalis GN=rnf12 PE=2 SV=1) HSP 1 Score: 58.5362 bits (140), Expect = 1.389e-7 Identity = 23/55 (41.82%), Postives = 36/55 (65.45%), Query Frame = -1 Query: 433 LQECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNIL-KGNEQ 594 L+ C +C++ Y +G L LPC+H +H CI +WL N+TCP+C+ +L GN + Sbjct: 582 LKTCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICRRAVLVAGNRE 636
BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy Swiss-Prot
Match: RNG1L_ARATH (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1 SV=1) HSP 1 Score: 57.3806 bits (137), Expect = 1.677e-7 Identity = 17/48 (35.42%), Postives = 34/48 (70.83%), Query Frame = -1 Query: 451 LQECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNI 594 + +C +C+ +EDG D+ +PC H FH C++ WL+++ +CP+C++ + Sbjct: 213 MNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELHNSCPVCRFEL 260
BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy Swiss-Prot
Match: RF12B_XENLA (E3 ubiquitin-protein ligase RNF12-B OS=Xenopus laevis GN=rnf12-b PE=2 SV=1) HSP 1 Score: 58.151 bits (139), Expect = 1.885e-7 Identity = 23/55 (41.82%), Postives = 36/55 (65.45%), Query Frame = -1 Query: 433 LQECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNIL-KGNEQ 594 L+ C +C++ Y +G L LPC+H +H CI +WL N+TCP+C+ +L GN + Sbjct: 700 LKTCSVCITEYTEGNKLRKLPCSHEYHIHCIDRWLSENSTCPICRRAVLVAGNRE 754
BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy TrEMBL
Match: A0A0B0N8Z3_GOSAR (E3 ubiquitin ligase RIE1-like protein OS=Gossypium arboreum GN=F383_07112 PE=4 SV=1) HSP 1 Score: 375.555 bits (963), Expect = 1.057e-125 Identity = 216/310 (69.68%), Postives = 243/310 (78.39%), Query Frame = -2 Query: 705 FTSSSKATMAA--SDPHAPLLRPRQPDGSAARPVSLAHLL--GRATGRRGASMLVXXXXXXXXXXXXADWGYSKPVVALDMLWNTAFVVVSVVMLISTADETPNTPIRLWICAYALQCLLHVVLVWLEYRRRNSRRISVTDEERGEAVSGDVNDSEDEEDS---GLFGSNESSITKRCETVNTMASFLWWIVGFYWVVSGGDILLQNAPRLYWLXXXXXXXXXXXXXFCVVLACLIGIALFCCLPCIIAILYAITEQEGASEADLSILPKYRFQIINNREKPSLGAGKMIPIETSSGYLANERILLPEDA 1613 +++ + AT AA SDPHAPLL PR D P S A L GR RRG +L RETAARE EE+R D YSK VVALDM+WN AFV +SVVML ST +E PNTPIRLW+C YAL C+LHVV VW EYR N+R S DEERG+A + VNDSEDEED LFGSN+SS+ KRCE++NTM SFLW IVGFYWVVSGGDILLQNAPRLYWL VVFLAFDVFFA+ CVVLACLIGIAL CCLPCI+AILYA+ +QEGA EADLS+L KYRFQIINN EKP +GAGKM+P+E S GYLANE +LLPEDA Sbjct: 5 YSTETPATPAAAPSDPHAPLLSPRHSD-----PASTAQLAMPGR---RRGGPVLARETAAREQEEQRVDCEYSKSVVALDMMWNAAFVALSVVMLPSTMNEKPNTPIRLWVCCYALLCMLHVVFVWWEYRWSNTRATSAVDEERGDAAAEHVNDSEDEEDGIEMSLFGSNQSSVAKRCESLNTMVSFLWCIVGFYWVVSGGDILLQNAPRLYWLVVVFLAFDVFFAVICVVLACLIGIALCCCLPCIVAILYAVAKQEGAVEADLSVLMKYRFQIINNGEKPCVGAGKMVPVEMSGGYLANEHLLLPEDA 306 HSP 2 Score: 104.375 bits (259), Expect = 1.057e-125 Identity = 46/53 (86.79%), Postives = 50/53 (94.34%), Query Frame = -1 Query: 430 ECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV 588 ECCICLSSYEDGVDLH+LPCNHHFHSTCI++WLK NATCPLCKYNILK NE + Sbjct: 307 ECCICLSSYEDGVDLHSLPCNHHFHSTCILRWLKTNATCPLCKYNILKRNEHL 359
BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy TrEMBL
Match: M5XF21_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007296mg PE=4 SV=1) HSP 1 Score: 366.311 bits (939), Expect = 9.583e-124 Identity = 224/307 (72.96%), Postives = 250/307 (81.43%), Query Frame = -2 Query: 705 HAPLLRPRQPDGS---------AARPVSLAHLLGRATGRRGASMLVXXXXXXXXXXXXADWGYSKPVVALDMLWNTAFVVVSVVMLISTADETPNTPIRLWICAYALQCLLHVVLVWLEYRRRN--SRRISVTDE---ERGEAVSGDVNDSEDEEDS----GLFGSNESSITKRCETVNTMASFLWWIVGFYWVVSGGDILLQNAPRLYWLXXXXXXXXXXXXXFCVVLACLIGIALFCCLPCIIAILYAITEQEGASEADLSILPKYRFQIINNREKPSLGAGKMIPIETSSGYLANERILLPEDA 1571 HAPLL PRQ ARP +LA LLGRATGRRG SMLVRETAAREL+ERRADWGYSKPVVALDM+WNTAFVVVSV MLI T E PNTPIRLWIC YALQC +HVVLVW+EY+RRN +RRIS ++ + V D ND++DEE + L S SS++KRCETVNTMASFLWWIVGFYWVV+GG++LLQNAPRLYWLAVVFLAFDVFFAIFCVVLACLIG+AL CCLPCIIAILYA+ QEGAS+ADLSILPKYRF+ ++ EK S+GAGKMIP+ETSSGYLA ERILLPEDA Sbjct: 16 HAPLLLPRQASSGRDSSDLGSPTARPATLAMLLGRATGRRGPSMLVRETAARELDERRADWGYSKPVVALDMMWNTAFVVVSVAMLIWTDHEHPNTPIRLWICGYALQCFVHVVLVWVEYQRRNNIARRISRRNQDAQQNQHQVEIDANDTDDEEAAAAARDLAISTRSSLSKRCETVNTMASFLWWIVGFYWVVAGGEVLLQNAPRLYWLAVVFLAFDVFFAIFCVVLACLIGVALCCCLPCIIAILYAVAGQEGASDADLSILPKYRFR-SSSEEKSSVGAGKMIPVETSSGYLAIERILLPEDA 321 HSP 2 Score: 107.457 bits (267), Expect = 9.583e-124 Identity = 47/53 (88.68%), Postives = 49/53 (92.45%), Query Frame = -1 Query: 430 ECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV 588 ECCICLS YEDG +LH LPCNHHFH+TCIVKWLKMNATCPLCKYNILKGNE V Sbjct: 322 ECCICLSPYEDGTELHTLPCNHHFHATCIVKWLKMNATCPLCKYNILKGNEPV 374
BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy TrEMBL
Match: F6HFD5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g05760 PE=4 SV=1) HSP 1 Score: 375.941 bits (964), Expect = 1.283e-122 Identity = 228/294 (77.55%), Postives = 248/294 (84.35%), Query Frame = -2 Query: 705 APLLRPRQPDG-SAARPVSLAHLLGRATGRRGASMLVXXXXXXXXXXXXADWGYSKPVVALDMLWNTAFVVVSVVMLISTADETPNTPIRLWICAYALQCLLHVVLVWLEYRRRNSRRISVTDEERGEA---VSGDVNDSEDEE--DSGLFGSNESSITKRCETVNTMASFLWWIVGFYWVVSGGDILLQNAPRLYWLXXXXXXXXXXXXXFCVVLACLIGIALFCCLPCIIAILYAITEQEGASEADLSILPKYRFQIINNREKPSLGAGKMIPIETSSGYLANERILLPEDA 1568 APLLRPRQ +ARP +LA L+GRATGRRG SMLVRETAARELEERRADWGYSKPVVALDM+WN +FV+VS+VMLI TA E PNTPIRLWIC YALQC +HVVLVWLEYRRRN V DEE+ + DVNDSEDE+ S G N+SS+TKRCE+VNTMASFLWWIVGFYWVVSGG+ LLQNAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIAL CCLPCIIAILYA+ QEGASEADLS+LP+YRF+ NN EK +GAG MIP ETSSGYLANERILLPEDA Sbjct: 12 APLLRPRQGTAEQSARPTTLALLMGRATGRRGPSMLVRETAARELEERRADWGYSKPVVALDMMWNMSFVIVSIVMLICTARERPNTPIRLWICGYALQCGVHVVLVWLEYRRRNR--RRVRDEEQQQQPQHSDSDVNDSEDEDGNSSASGGFNQSSVTKRCESVNTMASFLWWIVGFYWVVSGGEALLQNAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASEADLSMLPRYRFE-ANNEEKSGVGAGTMIPTETSSGYLANERILLPEDA 302 HSP 2 Score: 94.3597 bits (233), Expect = 1.283e-122 Identity = 43/58 (74.14%), Postives = 46/58 (79.31%), Query Frame = -1 Query: 415 ECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV*KNRR 588 ECCICL SYEDG L ALPCN HF STCI KWLK ATCPLCKY ILKG+EQ+ K +R Sbjct: 303 ECCICLHSYEDGTKLPALPCNPHFPSTCISKWLKKKATCPLCKYKILKGSEQILKKKR 360
BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy TrEMBL
Match: A5BIX9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_014258 PE=4 SV=1) HSP 1 Score: 374.4 bits (960), Expect = 7.010e-121 Identity = 226/294 (76.87%), Postives = 247/294 (84.01%), Query Frame = -2 Query: 705 APLLRPRQPDG-SAARPVSLAHLLGRATGRRGASMLVXXXXXXXXXXXXADWGYSKPVVALDMLWNTAFVVVSVVMLISTADETPNTPIRLWICAYALQCLLHVVLVWLEYRRRNSRRISVTDEERGEA---VSGDVNDSEDEE--DSGLFGSNESSITKRCETVNTMASFLWWIVGFYWVVSGGDILLQNAPRLYWLXXXXXXXXXXXXXFCVVLACLIGIALFCCLPCIIAILYAITEQEGASEADLSILPKYRFQIINNREKPSLGAGKMIPIETSSGYLANERILLPEDA 1568 APLLRPRQ +ARP +LA L+GRATGRRG SMLVRETAARELEERRADWGYSKPVVALDM+WN +FV+VS+VMLI TA E PNTPIRLWIC YALQC +HVVLVWLEYRRR+ V DEE+ + DVNDSEDE+ S G N+SS+TKRCE+VNTMASFLWWIVGFYWVVSGG+ LLQNAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIAL CCLPCIIAILYA+ QEGASEADLS+LP+YRF+ NN EK +GAG M P ETSSGYLANERILLPEDA Sbjct: 12 APLLRPRQGTAEQSARPTTLALLMGRATGRRGPSMLVRETAARELEERRADWGYSKPVVALDMMWNMSFVIVSIVMLICTARERPNTPIRLWICGYALQCGVHVVLVWLEYRRRSR--RRVRDEEQQQQPQHSDSDVNDSEDEDGNSSASGGFNQSSVTKRCESVNTMASFLWWIVGFYWVVSGGEALLQNAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASEADLSMLPRYRFE-ANNEEKSGVGAGTMFPTETSSGYLANERILLPEDA 302 HSP 2 Score: 89.7373 bits (221), Expect = 7.010e-121 Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = -1 Query: 463 ECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLC 588 ECCICLSSYEDG +LHALPCNHHFHSTCI KWLKMNATCPLC Sbjct: 303 ECCICLSSYEDGAELHALPCNHHFHSTCIAKWLKMNATCPLC 344
BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy TrEMBL
Match: A0A059BE69_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G02105 PE=4 SV=1) HSP 1 Score: 348.977 bits (894), Expect = 3.760e-120 Identity = 220/304 (72.37%), Postives = 248/304 (81.58%), Query Frame = -2 Query: 705 DPHAPLLRPRQPDGSAA----------RPVSLAHLLGRATGRRGASMLVXXXXXXXXXXXXADWGYSKPVVALDMLWNTAFVVVSVVMLISTADETPNTPIRLWICAYALQCLLHVVLVWLEYRRRNSRRISVTDEERGEAVSGDVNDSEDEE---DSGLFGSNESSITKRCETVNTMASFLWWIVGFYWVVSGGDILLQNAPRLYWLXXXXXXXXXXXXXFCVVLACLIGIALFCCLPCIIAILYAITEQEGASEADLSILPKYRFQIINNREKPSLGAGKMIPIETSSGYLANERILLPEDA 1577 D APLL RQ G+ R SLA LLGRA GRRG SMLVRETAARELE+RRADWGYS+PVVALD++WNTAFV+VSVVML+ TADE PNTPIRLWIC YA QCL+HVVLVW+EYRR V DEER + + VNDSEDEE D+ L + +S++TKRCE++NTMASFLWWIVGFYWVVSGGDILL APRLYWLAVVFLAFDVFFAIFCVVLACLIGIAL CCLPCIIAILYA+ QEGASEADLSILPKY+F I++N EK +GAGKM+P+ET+SGYLAN+R+LLPEDA Sbjct: 22 DQQAPLLASRQGSGADDGGSGSSDSGPRQPSLAVLLGRAAGRRGPSMLVRETAARELEQRRADWGYSRPVVALDIMWNTAFVLVSVVMLVVTADEHPNTPIRLWICGYAAQCLVHVVLVWIEYRR--RSARRVRDEERQQNYNY-VNDSEDEEAGVDAALGSTAQSNVTKRCESINTMASFLWWIVGFYWVVSGGDILLAEAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASEADLSILPKYKFHILSNGEKTVVGAGKMVPVETTSGYLANDRLLLPEDA 322 HSP 2 Score: 112.464 bits (280), Expect = 3.760e-120 Identity = 49/53 (92.45%), Postives = 52/53 (98.11%), Query Frame = -1 Query: 430 ECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV 588 ECCICL+SYEDG +LHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQ+ Sbjct: 323 ECCICLTSYEDGAELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQI 375
BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy TrEMBL
Match: V4KBJ8_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10018815mg PE=4 SV=1) HSP 1 Score: 352.829 bits (904), Expect = 2.611e-119 Identity = 202/294 (68.71%), Postives = 236/294 (80.27%), Query Frame = -2 Query: 705 SDPHAPLLRPRQPDGSAARPVSLAHLLGRATGRRGASMLVXXXXXXXXXXXXADWGYSKPVVALDMLWNTAFVVVSVVMLISTADETPNTPIRLWICAYALQCLLHVVLVWLEYRRRNSRRISVTDEERGE-AVSG-DVNDSEDEEDSGLFGSNESSITKRCETVNTMASFLWWIVGFYWVVSGGDILLQNAPRLYWLXXXXXXXXXXXXXFCVVLACLIGIALFCCLPCIIAILYAITEQEGASEADLSILPKYRFQIINNREKPSLGAGKMIPIETSSGYLANERILLPEDA 1580 SD + PLLR RQ +PV +A LLGRA+GRRGASM+VRETAA+ELE+RRADWGYSKPVVALDMLWNTAFVVV++VML+ + DE PN PIR+WIC YALQCL+HVVLVWLE+R+RN+ D E GE +V G + +DSEDE+ G TK CE+ NT+ SF+WWIVGFYW++SGGDILLQNA LYWL VFLAFDVFFA+FCV+LACLIGIAL CCLPCIIA+LYA+ QEGASEADLSILPKY+FQ++NN EK S G GKMIPIE + Y NER+LLPEDA Sbjct: 2 SDSNTPLLRSRQNSPRRRQPV-IAVLLGRASGRRGASMVVRETAAQELEDRRADWGYSKPVVALDMLWNTAFVVVAIVMLLVSKDENPNVPIRVWICGYALQCLVHVVLVWLEFRKRNNTSRRGGDLEAGEGSVHGRNSHDSEDED-----GDERILSTKTCESFNTIISFVWWIVGFYWLISGGDILLQNASHLYWLTFVFLAFDVFFAVFCVILACLIGIALCCCLPCIIALLYAVAGQEGASEADLSILPKYKFQMMNNGEKQSDGGGKMIPIEAGTDYSGNERVLLPEDA 289 HSP 2 Score: 106.301 bits (264), Expect = 2.611e-119 Identity = 47/52 (90.38%), Postives = 50/52 (96.15%), Query Frame = -1 Query: 433 ECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQ 588 +CCICLSSYEDG +L ALPCNHHFHSTCIVKWLKMNATCPLCK+NILKGNEQ Sbjct: 290 DCCICLSSYEDGTELVALPCNHHFHSTCIVKWLKMNATCPLCKFNILKGNEQ 341
BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy TrEMBL
Match: I1KKV7_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 345.125 bits (884), Expect = 3.614e-118 Identity = 215/306 (70.26%), Postives = 243/306 (79.41%), Query Frame = -2 Query: 705 FTSSSKATMAASDPHAPLLRPRQPDGSAARPVSLAHLLGRATGRRGASMLVXXXXXXXXXXXXADWGYSKPVVALDMLWNTAFVVVSVVMLISTADETPNTPIRLWICAYALQCLLHVVLVWLEYRRR---NSRRISVTDEERGEAVSGDVNDSEDEEDSGLFGSNESSITKRCETVNTMASFLWWIVGFYWVVSGGDILLQNAPRLYWLXXXXXXXXXXXXXFCVVLACLIGIALFCCLPCIIAILYAITEQEGASEADLSILPKYRFQIINNREKPSLGAGKMIPIETSSGYLANERILLPEDA 1613 +S + A+M A + HAPLLRP D S A +LA LLGRA GRRG SMLVRETAARELEERRADWGYSKPVVALDM WN AFVVV+ VML T E PNTPIR+WI YALQCL+HV+LVWLEYRRR +S + +A SGD + S+D + S + S+ S TKRCE +NT SFLWWIVGFYWVVSGG+ILLQ+APRLYWL VVFLAFDVFFAIFCVVLACLIGIAL CCLPCIIAILYA+ QEGASEADLS+LPKYRF+I+++ +KPS GAG M+PIETSS YLANER LLPEDA Sbjct: 1 MSSQTAASMEAPESHAPLLRPLT-DASRAPVPTLALLLGRA-GRRGPSMLVRETAARELEERRADWGYSKPVVALDMSWNMAFVVVTAVMLACTTAERPNTPIRVWIVGYALQCLVHVLLVWLEYRRRSRRDSHHGQRARDVESDAGSGDEDYSDDRDWSSGY-SSRSRFTKRCELLNTGVSFLWWIVGFYWVVSGGNILLQDAPRLYWLVVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASEADLSMLPKYRFRILSDEDKPSGGAGSMVPIETSSAYLANERTLLPEDA 303 HSP 2 Score: 110.153 bits (274), Expect = 3.614e-118 Identity = 49/53 (92.45%), Postives = 51/53 (96.23%), Query Frame = -1 Query: 430 ECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV 588 ECCICL SYEDG +LHALPCNHHFHS+CIVKWLKMNATCPLCKYNILKGNEQV Sbjct: 304 ECCICLCSYEDGAELHALPCNHHFHSSCIVKWLKMNATCPLCKYNILKGNEQV 356
BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy TrEMBL
Match: W9SPX8_9ROSA (E3 ubiquitin protein ligase RIE1 OS=Morus notabilis GN=L484_001391 PE=4 SV=1) HSP 1 Score: 345.125 bits (884), Expect = 1.599e-117 Identity = 212/356 (59.55%), Postives = 242/356 (67.98%), Query Frame = -2 Query: 705 ATMAASDPHAPLLRPRQPDG------SAARPVSLAHLLGRATGRRGASMLVXXXXXXXXXXXXADWGYSKPVVALDMLWNTAFVVVSVVMLISTADETPNTPIRLWICAYALQCLLHVVLVWLEY----------RRRNSRRISVTDEERGEAVSGDVNDSEDEE-------------------------------------------DSGLFGSNESSITKRCETVNTMASFLWWIVGFYWVVSGGDILLQNAPRLYWLXXXXXXXXXXXXXFCVVLACLIGIALFCCLPCIIAILYAITEQEGASEADLSILPKYRFQIINNREKPSLGAGKMIPIETSSGYLANERILLPEDA 1595 +T A+ + HAPLLRPRQ D S ARPV+LA LLGRATGRRGASMLVRETAARELEERRADWGYSKPVVALDM+WNTAFVVVS+ ML+ TA+E PNTPIR+WIC YALQC++HV LV LEY + R + D E + V + S + G+ +S TKRCE+VNTM SFLWWIVGFYWVVSGG++LLQNAPRLYWL VVFLAFDV FA+FCVVLACLIG+AL CCLPCIIAILYA+ QEGASEADL LP+YRF+I ++ EKPSLG G M+P+ETSS YLA ERILLPEDA Sbjct: 2 STEASGESHAPLLRPRQGDEPSEPVISPARPVTLAALLGRATGRRGASMLVRETAARELEERRADWGYSKPVVALDMMWNTAFVVVSMAMLVITANERPNTPIRVWICGYALQCIVHVALVSLEYRRRNARRRRSQESPGRFDAANDTEEEDEVERNSESSGQSRVQIRQTVKNGKPIIVYHTLRAYLEGAGCPCFLVLPLLKIYLDFNDGVNCLGYASFTKRCESVNTMVSFLWWIVGFYWVVSGGNVLLQNAPRLYWLTVVFLAFDVLFAVFCVVLACLIGVALCCCLPCIIAILYAVAGQEGASEADLRFLPQYRFRISSDDEKPSLGEGTMVPVETSSRYLATERILLPEDA 357 HSP 2 Score: 107.842 bits (268), Expect = 1.599e-117 Identity = 47/52 (90.38%), Postives = 49/52 (94.23%), Query Frame = -1 Query: 433 ECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQ 588 ECCICLSSYEDG +LHALPCNHHFHS CIVKWL MNATCPLCKYNILKG+EQ Sbjct: 358 ECCICLSSYEDGAELHALPCNHHFHSACIVKWLTMNATCPLCKYNILKGSEQ 409
BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy TrEMBL
Match: A0A061E7X4_THECC (Zinc finger isoform 2 OS=Theobroma cacao GN=TCM_011052 PE=4 SV=1) HSP 1 Score: 362.844 bits (930), Expect = 1.893e-117 Identity = 206/243 (84.77%), Postives = 215/243 (88.48%), Query Frame = -2 Query: 864 ASDPHAPLLRPRQPDGSAARPVSLAHLLGRATGRRGASMLVXXXXXXXXXXXXADWGYSKPVVALDMLWNTAFVVVSVVMLISTADETPNTPIRLWICAYALQCLLHVVLVWLEYRRRNSRRISVTDEERGEAVSGDVNDSEDEEDS---GLFGSNESSITKRCETVNTMASFLWWIVGFYWVVSGGDILLQNAPRLYWLXXXXXXXXXXXXXFCVVLACLIGIALFCCLPCIIAILYAITEQ 1583 ASD HAPLLRPRQPD SAARP +LA LLGRATGRRGASMLVRETAARELEERRADWGYSKPVVALDMLWNTAFV VSV MLI T DE NTPIRLWIC YALQCL+HVVLVWLEYRRRN RR S DEERG+A SGD NDSEDE+D FGSN+SS+TKRCE+VNTM SFLWWIVGFYWVVSGG+ LLQNAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIAL CCLPCIIAILYA+ Q Sbjct: 13 ASDSHAPLLRPRQPDASAARPATLALLLGRATGRRGASMLVRETAARELEERRADWGYSKPVVALDMLWNTAFVAVSVAMLICTVDERTNTPIRLWICGYALQCLVHVVLVWLEYRRRNVRRTSARDEERGDATSGDANDSEDEQDGIERSAFGSNQSSVTKRCESVNTMVSFLWWIVGFYWVVSGGNYLLQNAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQ 255
BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy TrEMBL
Match: V7CQN0_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G321300g PE=4 SV=1) HSP 1 Score: 340.117 bits (871), Expect = 1.066e-116 Identity = 209/295 (70.85%), Postives = 231/295 (78.31%), Query Frame = -2 Query: 705 AASDPHAPLLRPRQPDGSAARPVSLAHLLGRATGRRGASMLVXXXXXXXXXXXXADWGYSKPVVALDMLWNTAFVVVSVVMLISTADETPNTPIRLWICAYALQCLLHVVLVWLEYRRRNSRRISVTDEERGEAVSGDVNDSEDEEDSGLFGSNESS-ITKRCETVNTMASFLWWIVGFYWVVSGGDILLQNAPRLYWLXXXXXXXXXXXXXFCVVLACLIGIALFCCLPCIIAILYAITEQEGASEADLSILPKYRFQIINNREKPSLGAGKMIPIETSSGYLANERILLPEDA 1586 AA PHAPLL PR PD +AAR LA LLGR RG S +VRETAARELEERRADW YSKPVVALD+ WN AFVVVSVVML T E PN PIR WIC YALQCL+HV LVWLEYRRR+ + +E G DVNDS DEED G S S+ TKRC ++NTM S LWW+VGFYWVVSGGD+LLQ+APRLYWLAVVFLAFDVFFAIFCVVLACLIGIAL CCLPCIIAILYA+ QEGASE+DLS+LPK+RFQ+I+N E PS G G MIP+ET +GY NERIL P+DA Sbjct: 6 AAPQPHAPLLLPR-PDAAAARLPVLALLLGR----RGHSAVVRETAARELEERRADWTYSKPVVALDVTWNMAFVVVSVVMLACTVKEKPNMPIRWWICGYALQCLVHVALVWLEYRRRSD--VPRDEESGGHLDYDDVNDS-DEEDVGSSESYFSTGFTKRCTSLNTMVSLLWWMVGFYWVVSGGDVLLQDAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASESDLSVLPKFRFQMISNEETPSKGGGSMIPVETINGYSVNERILSPDDA 292 HSP 2 Score: 110.153 bits (274), Expect = 1.066e-116 Identity = 48/53 (90.57%), Postives = 51/53 (96.23%), Query Frame = -1 Query: 430 ECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV 588 ECCIC+SSYEDG +LH LPCNHHFHSTCIVKWLKMNATCPLCK+NILKGNEQV Sbjct: 293 ECCICISSYEDGAELHVLPCNHHFHSTCIVKWLKMNATCPLCKFNILKGNEQV 345 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 23
Pagesback to top
BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0097403 ID=g.barbadense_cottongen_reftransV1_0097403; Name=g.barbadense_cottongen_reftransV1_0097403; organism=Gossypium barbadense; type=contig; length=1917bpback to top |