g.barbadense_cottongen_reftransV1_0097403, g.barbadense_cottongen_reftransV1_0097403 (contig) Gossypium barbadense

Overview
Nameg.barbadense_cottongen_reftransV1_0097403
Unique Nameg.barbadense_cottongen_reftransV1_0097403
Typecontig
OrganismGossypium barbadense (Sea Island cotton)
Sequence length1917
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Dt02chromosomeg.barbadense_cottongen_reftransV1_0097403:1..1917 .
Dt02:48783005..48786506 +
Homology
BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy Swiss-Prot
Match: RIE1_ARATH (E3 ubiquitin protein ligase RIE1 OS=Arabidopsis thaliana GN=RIE1 PE=2 SV=1)

HSP 1 Score: 307.375 bits (786), Expect = 2.912e-106
Identity = 185/309 (59.87%), Postives = 213/309 (68.93%), Query Frame = -2
Query:  705 FTSSSKATMAASDPHAPLLRPRQPDGSA------ARPVSLAHLLGRATGRRGASMLVXXXXXXXXXXXXADWGYSKPVVALDMLWNTAFVVVSVVMLISTADETPNTPIRLWICAYALQCLLHVVLVWLEYRRRNSRRISVTDEERGEAVSGDVNDSEDEEDSGLFGSNESSITKRCETVNTMASFLWWIVGFYWVVSGGDILLQNAPRLYWLXXXXXXXXXXXXXFCVVLACLIGIALFCCLPCIIAILYAITEQEGASEADLSILPKYRFQIINNREKPSLGAGKMIPIETSSGYLANERILLPEDA 1613
             +S S  + AA D HAPLLRPR  DGS       ARP +LA LLGR TG R  SMLVRETAAR LEERR DWGYSKPVVA D+LWN A V+ S VML+ T +E PN PIR+WIC Y LQCL HVVLVW EY RRNS R +   E        D N   D E      S   S  KRCE++NT+ SF+WWI+GFYWVV GGD LL  AP LYWL+V+FLA DVFFA+FCVVLACL+GIAL CCLPCIIA+LYA+   EG SEA+L +LP Y+F+  ++ EK   G GKM+PI  +   LA ER LL EDA
Sbjct:    1 MSSYSSDSTAARDQHAPLLRPRH-DGSFSSSSSSARPTALAVLLGRITGHRAPSMLVRETAARALEERRIDWGYSKPVVAADILWNAALVLASAVMLVGTVEERPNEPIRVWICVYGLQCLFHVVLVWSEYWRRNSTRRARDLESYDHE---DYNIEYDYEQDSDDNSTTYSFVKRCESINTVISFIWWIIGFYWVVEGGDKLLGEAPNLYWLSVIFLAIDVFFAVFCVVLACLVGIALCCCLPCIIALLYAVAGTEGVSEAELGVLPLYKFKAFHSNEKNITGPGKMVPIPINGLCLATERTLLAEDA 305          

HSP 2 Score: 102.064 bits (253), Expect = 2.912e-106
Identity = 45/50 (90.00%), Postives = 47/50 (94.00%), Query Frame = -1
Query:  439 ECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGN 588
            +CCICLSSYEDG +LHALPCNHHFHSTCIVKWLKM ATCPLCKYNILKG 
Sbjct:  306 DCCICLSSYEDGAELHALPCNHHFHSTCIVKWLKMRATCPLCKYNILKGT 355          
BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy Swiss-Prot
Match: RING4_ARATH (E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana GN=At4g11680 PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.392e-67
Identity = 144/304 (47.37%), Postives = 184/304 (60.53%), Query Frame = -2
Query:  705 TMAASDPHAPLLRPRQPDGSAARPVSLAHLLGRATGRRGASMLVXXXXXXXXXXXXADWGYSKPVVALDMLWNTAFVVVSVVMLISTADETPNTPIRLWICAYALQCLLHVVLVWLEYRRRNSRRISVTDEERGEAVSGDVNDSEDE-------EDSGLFGSNESSITKRCETVNTMASFLWWIVGFYWVVSGGDILLQNAPRLYWLXXXXXXXXXXXXXFCVVLACLIGIALFCCLPCIIAILYAITEQEGASEADLSILPKYRFQIINNREKPSLGAGKMIPIETSSGYLAN-ERILLPEDA 1592
            T++  +   P+ R  +  G       L H   R   R   SMLVRETAA +LEER++DW YSKPVV LD+LWN AFV + V +LI + DE PN P+R+W+  Y +QC LH+  V +EY     RR      E G   SG  N S  +       ED G      S+  K  E+ NTM SF+WWI+GFYWV +GG  L  ++P+LYWL ++FL FDVFF +FCV LAC+IG+A+ CCLPCIIAILYA+ +QEGAS+ D+  +PK+RF    N EK S   GK   I T  G  +  ER L PEDA
Sbjct:   46 TISVDEESNPIHRSARRQGLREAARFLRHAGSRRMMRE-PSMLVRETAAEQLEERQSDWAYSKPVVFLDILWNLAFVAIGVAVLILSRDEKPNMPLRVWVVGYGIQCWLHMACVCVEY----RRRRRRRHPEDGGG-SGLTNSSSQQYVSLAQLEDRG----ETSNPAKHLESANTMFSFIWWIIGFYWVSAGGQTLSSDSPQLYWLCIIFLGFDVFFVVFCVALACVIGLAVCCCLPCIIAILYAVADQEGASKNDIDQMPKFRFTKTGNVEKLS---GKARGIMTECGTDSPIERSLSPEDA 336          

HSP 2 Score: 81.2629 bits (199), Expect = 1.392e-67
Identity = 36/48 (75.00%), Postives = 40/48 (83.33%), Query Frame = -1
Query:  445 ECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNILK 588
            ECCICL  YEDGV+L  LPCNHHFH TCI KWL +N+ CPLCK+NILK
Sbjct:  337 ECCICLCEYEDGVELRELPCNHHFHCTCIDKWLHINSRCPLCKFNILK 384          
BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy Swiss-Prot
Match: RING1_ARATH (E3 ubiquitin-protein ligase At1g12760 OS=Arabidopsis thaliana GN=At1g12760 PE=1 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 2.780e-66
Identity = 138/292 (47.26%), Postives = 181/292 (61.99%), Query Frame = -2
Query:  705 AHLLGRAT-GR--RGASMLVXXXXXXXXXXXXADWGYSKPVVALDMLWNTAFVVVSVVMLISTADETPNTPIRLWICAYALQCLLHVVLVWLEYRRRNSRRISVTDEE-----------------RGEAVSGDVNDSEDEEDSGLFGSNESSITKRCETVNTMASFLWWIVGFYWVVSGGDILLQNAPRLYWLXXXXXXXXXXXXXFCVVLACLIGIALFCCLPCIIAILYAITEQEGASEADLSILPKYRFQIIN--NREKPSLGAGKMIPIETSSGYLAN-ERILLPEDA 1511
            A  L RA+ GR  R  SMLVRE AA +LEER++DW YSKPVV LD++WN AFV V+  +L+ +  E P  P+R+W+  YALQC+LH+V V +EYRRRN RR + T                      EA+    N    +   G   +  SS+ K  E+ NTM SF+WWI+GFYWV +GG  L Q +PR+YWL++VFL FDVFF +FCV LAC+IGIA+ CCLPCIIA+LYA+ +QEGAS+ D+  L K++F+ +   N+       G    I T  G  +  E  LL EDA
Sbjct:   60 ARFLSRASSGRVMREPSMLVREAAAEQLEERQSDWAYSKPVVVLDIVWNLAFVSVATAILVMSRKEHPIMPLRVWLLGYALQCVLHMVCVCVEYRRRNRRRTNRTTTTTPPRSRSSSSSSSSSSLEEEALGSRRNSGVQDLSLGHLDTESSSVAKHLESANTMFSFIWWIIGFYWVSAGGQELAQESPRIYWLSIVFLGFDVFFVVFCVALACVIGIAVCCCLPCIIAVLYAVADQEGASKEDIEQLTKFKFRKLGDANKHTNDEAQGTTEGIMTECGTDSPIEHTLLQEDA 351          

HSP 2 Score: 84.7297 bits (208), Expect = 2.780e-66
Identity = 36/50 (72.00%), Postives = 42/50 (84.00%), Query Frame = -1
Query:  439 ECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGN 588
            ECCICLS+YEDG +L  LPC HHFH +C+ KWL +NATCPLCKYNILK +
Sbjct:  352 ECCICLSAYEDGTELRELPCGHHFHCSCVDKWLYINATCPLCKYNILKSS 401          
BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy Swiss-Prot
Match: RING2_ARATH (E3 ubiquitin-protein ligase At1g63170 OS=Arabidopsis thaliana GN=At1g63170 PE=2 SV=2)

HSP 1 Score: 184.882 bits (468), Expect = 5.406e-63
Identity = 143/293 (48.81%), Postives = 186/293 (63.48%), Query Frame = -2
Query:  705 AHLLGRAT-GR---RGASMLVXXXXXXXXXXXXADWGYSKPVVALDMLWNTAFVVVSVVMLISTADETPNTPIRLWICAYALQCLLHVVLVWLEYRRRNSRRISVT---------------DEERGEAVSGDVNDSEDEEDSGLFGSNESSITKRCETVNTMASFLWWIVGFYWVVSGGDILLQNAPRLYWLXXXXXXXXXXXXXFCVVLACLIGIALFCCLPCIIAILYAITEQEGASEADLSILPKYRFQIINNREKPSL----GAGKMIPIETSSGYLANERILLP-EDA 1511
            A LL  A+ GR   R  SMLVRE AA +LEER++DW YSKPVV LD +WN AFVVV+  +L+ ++DE PN P+R+WI  Y LQC++H+V V +EYRRRNSRR                   DEE G  +S   N  E   + G   +  +S  K  E+ NTM SF+WW++GFYWV SGG  L Q +P+LYWL +VFL FDVFF +FCV LAC+IGIA+ CCLPCIIA+LYA+ EQEGAS+ D+  L K++F+ + +  K ++    G G    + T  G  +     LP EDA
Sbjct:   33 ARLLRHASSGRMMMREPSMLVREAAAEQLEERQSDWAYSKPVVVLDFVWNLAFVVVATAVLVLSSDENPNMPLRVWIIGYGLQCMMHMVCVCVEYRRRNSRRRRDLSPRSSSSSSSSSSSMDEEEGLGLSR--NSDERYLELGQLENENNSFAKHLESANTMISFIWWVIGFYWVSSGGQELAQGSPQLYWLCIVFLGFDVFFVVFCVALACVIGIAVCCCLPCIIAVLYAVAEQEGASKEDIDQLTKFKFRKVGDTMKHTVDEEQGQGDSGGVMTECGTDSPVEHALPHEDA 323          

HSP 2 Score: 80.1073 bits (196), Expect = 5.406e-63
Identity = 35/50 (70.00%), Postives = 40/50 (80.00%), Query Frame = -1
Query:  439 ECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGN 588
            ECCICLS+YED  +L  LPC HHFH  C+ KWL +NATCPLCKYNILK +
Sbjct:  324 ECCICLSAYEDETELRELPCGHHFHCGCVDKWLYINATCPLCKYNILKSS 373          
BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy Swiss-Prot
Match: RNF12_MOUSE (E3 ubiquitin-protein ligase RLIM OS=Mus musculus GN=Rlim PE=1 SV=2)

HSP 1 Score: 58.9214 bits (141), Expect = 9.402e-8
Identity = 23/55 (41.82%), Postives = 36/55 (65.45%), Query Frame = -1
Query:  433 LQECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNIL-KGNEQ 594
            L+ C +C++ Y +G  L  LPC+H +H  CI +WL  N+TCP+C+  +L  GN +
Sbjct:  543 LKTCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICRRAVLSSGNRE 597          
BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy Swiss-Prot
Match: RNF12_HUMAN (E3 ubiquitin-protein ligase RLIM OS=Homo sapiens GN=RLIM PE=1 SV=3)

HSP 1 Score: 58.9214 bits (141), Expect = 1.058e-7
Identity = 23/55 (41.82%), Postives = 36/55 (65.45%), Query Frame = -1
Query:  433 LQECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNIL-KGNEQ 594
            L+ C +C++ Y +G  L  LPC+H +H  CI +WL  N+TCP+C+  +L  GN +
Sbjct:  567 LKTCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICRRAVLASGNRE 621          
BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy Swiss-Prot
Match: ZNRF3_XENLA (E3 ubiquitin-protein ligase ZNRF3 OS=Xenopus laevis GN=znrf3 PE=2 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 1.345e-7
Identity = 23/50 (46.00%), Postives = 32/50 (64.00%), Query Frame = -1
Query:  445 LQECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNILK 594
            + +C ICL  Y DG +L  +PC H FH  C+  WL  N TCP C++NI++
Sbjct:  199 ISDCAICLEKYIDGEELRVIPCTHRFHKRCVDPWLLQNHTCPHCRHNIIE 248          
BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy Swiss-Prot
Match: RNF12_XENTR (E3 ubiquitin-protein ligase RNF12 OS=Xenopus tropicalis GN=rnf12 PE=2 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 1.389e-7
Identity = 23/55 (41.82%), Postives = 36/55 (65.45%), Query Frame = -1
Query:  433 LQECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNIL-KGNEQ 594
            L+ C +C++ Y +G  L  LPC+H +H  CI +WL  N+TCP+C+  +L  GN +
Sbjct:  582 LKTCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICRRAVLVAGNRE 636          
BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy Swiss-Prot
Match: RNG1L_ARATH (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 1.677e-7
Identity = 17/48 (35.42%), Postives = 34/48 (70.83%), Query Frame = -1
Query:  451 LQECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNI 594
            + +C +C+  +EDG D+  +PC H FH  C++ WL+++ +CP+C++ +
Sbjct:  213 MNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELHNSCPVCRFEL 260          
BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy Swiss-Prot
Match: RF12B_XENLA (E3 ubiquitin-protein ligase RNF12-B OS=Xenopus laevis GN=rnf12-b PE=2 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 1.885e-7
Identity = 23/55 (41.82%), Postives = 36/55 (65.45%), Query Frame = -1
Query:  433 LQECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNIL-KGNEQ 594
            L+ C +C++ Y +G  L  LPC+H +H  CI +WL  N+TCP+C+  +L  GN +
Sbjct:  700 LKTCSVCITEYTEGNKLRKLPCSHEYHIHCIDRWLSENSTCPICRRAVLVAGNRE 754          
BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy TrEMBL
Match: A0A0B0N8Z3_GOSAR (E3 ubiquitin ligase RIE1-like protein OS=Gossypium arboreum GN=F383_07112 PE=4 SV=1)

HSP 1 Score: 375.555 bits (963), Expect = 1.057e-125
Identity = 216/310 (69.68%), Postives = 243/310 (78.39%), Query Frame = -2
Query:  705 FTSSSKATMAA--SDPHAPLLRPRQPDGSAARPVSLAHLL--GRATGRRGASMLVXXXXXXXXXXXXADWGYSKPVVALDMLWNTAFVVVSVVMLISTADETPNTPIRLWICAYALQCLLHVVLVWLEYRRRNSRRISVTDEERGEAVSGDVNDSEDEEDS---GLFGSNESSITKRCETVNTMASFLWWIVGFYWVVSGGDILLQNAPRLYWLXXXXXXXXXXXXXFCVVLACLIGIALFCCLPCIIAILYAITEQEGASEADLSILPKYRFQIINNREKPSLGAGKMIPIETSSGYLANERILLPEDA 1613
            +++ + AT AA  SDPHAPLL PR  D     P S A L   GR   RRG  +L RETAARE EE+R D  YSK VVALDM+WN AFV +SVVML ST +E PNTPIRLW+C YAL C+LHVV VW EYR  N+R  S  DEERG+A +  VNDSEDEED     LFGSN+SS+ KRCE++NTM SFLW IVGFYWVVSGGDILLQNAPRLYWL VVFLAFDVFFA+ CVVLACLIGIAL CCLPCI+AILYA+ +QEGA EADLS+L KYRFQIINN EKP +GAGKM+P+E S GYLANE +LLPEDA
Sbjct:    5 YSTETPATPAAAPSDPHAPLLSPRHSD-----PASTAQLAMPGR---RRGGPVLARETAAREQEEQRVDCEYSKSVVALDMMWNAAFVALSVVMLPSTMNEKPNTPIRLWVCCYALLCMLHVVFVWWEYRWSNTRATSAVDEERGDAAAEHVNDSEDEEDGIEMSLFGSNQSSVAKRCESLNTMVSFLWCIVGFYWVVSGGDILLQNAPRLYWLVVVFLAFDVFFAVICVVLACLIGIALCCCLPCIVAILYAVAKQEGAVEADLSVLMKYRFQIINNGEKPCVGAGKMVPVEMSGGYLANEHLLLPEDA 306          

HSP 2 Score: 104.375 bits (259), Expect = 1.057e-125
Identity = 46/53 (86.79%), Postives = 50/53 (94.34%), Query Frame = -1
Query:  430 ECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV 588
            ECCICLSSYEDGVDLH+LPCNHHFHSTCI++WLK NATCPLCKYNILK NE +
Sbjct:  307 ECCICLSSYEDGVDLHSLPCNHHFHSTCILRWLKTNATCPLCKYNILKRNEHL 359          
BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy TrEMBL
Match: M5XF21_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007296mg PE=4 SV=1)

HSP 1 Score: 366.311 bits (939), Expect = 9.583e-124
Identity = 224/307 (72.96%), Postives = 250/307 (81.43%), Query Frame = -2
Query:  705 HAPLLRPRQPDGS---------AARPVSLAHLLGRATGRRGASMLVXXXXXXXXXXXXADWGYSKPVVALDMLWNTAFVVVSVVMLISTADETPNTPIRLWICAYALQCLLHVVLVWLEYRRRN--SRRISVTDE---ERGEAVSGDVNDSEDEEDS----GLFGSNESSITKRCETVNTMASFLWWIVGFYWVVSGGDILLQNAPRLYWLXXXXXXXXXXXXXFCVVLACLIGIALFCCLPCIIAILYAITEQEGASEADLSILPKYRFQIINNREKPSLGAGKMIPIETSSGYLANERILLPEDA 1571
            HAPLL PRQ              ARP +LA LLGRATGRRG SMLVRETAAREL+ERRADWGYSKPVVALDM+WNTAFVVVSV MLI T  E PNTPIRLWIC YALQC +HVVLVW+EY+RRN  +RRIS  ++   +    V  D ND++DEE +     L  S  SS++KRCETVNTMASFLWWIVGFYWVV+GG++LLQNAPRLYWLAVVFLAFDVFFAIFCVVLACLIG+AL CCLPCIIAILYA+  QEGAS+ADLSILPKYRF+  ++ EK S+GAGKMIP+ETSSGYLA ERILLPEDA
Sbjct:   16 HAPLLLPRQASSGRDSSDLGSPTARPATLAMLLGRATGRRGPSMLVRETAARELDERRADWGYSKPVVALDMMWNTAFVVVSVAMLIWTDHEHPNTPIRLWICGYALQCFVHVVLVWVEYQRRNNIARRISRRNQDAQQNQHQVEIDANDTDDEEAAAAARDLAISTRSSLSKRCETVNTMASFLWWIVGFYWVVAGGEVLLQNAPRLYWLAVVFLAFDVFFAIFCVVLACLIGVALCCCLPCIIAILYAVAGQEGASDADLSILPKYRFR-SSSEEKSSVGAGKMIPVETSSGYLAIERILLPEDA 321          

HSP 2 Score: 107.457 bits (267), Expect = 9.583e-124
Identity = 47/53 (88.68%), Postives = 49/53 (92.45%), Query Frame = -1
Query:  430 ECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV 588
            ECCICLS YEDG +LH LPCNHHFH+TCIVKWLKMNATCPLCKYNILKGNE V
Sbjct:  322 ECCICLSPYEDGTELHTLPCNHHFHATCIVKWLKMNATCPLCKYNILKGNEPV 374          
BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy TrEMBL
Match: F6HFD5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g05760 PE=4 SV=1)

HSP 1 Score: 375.941 bits (964), Expect = 1.283e-122
Identity = 228/294 (77.55%), Postives = 248/294 (84.35%), Query Frame = -2
Query:  705 APLLRPRQPDG-SAARPVSLAHLLGRATGRRGASMLVXXXXXXXXXXXXADWGYSKPVVALDMLWNTAFVVVSVVMLISTADETPNTPIRLWICAYALQCLLHVVLVWLEYRRRNSRRISVTDEERGEA---VSGDVNDSEDEE--DSGLFGSNESSITKRCETVNTMASFLWWIVGFYWVVSGGDILLQNAPRLYWLXXXXXXXXXXXXXFCVVLACLIGIALFCCLPCIIAILYAITEQEGASEADLSILPKYRFQIINNREKPSLGAGKMIPIETSSGYLANERILLPEDA 1568
            APLLRPRQ     +ARP +LA L+GRATGRRG SMLVRETAARELEERRADWGYSKPVVALDM+WN +FV+VS+VMLI TA E PNTPIRLWIC YALQC +HVVLVWLEYRRRN     V DEE+ +       DVNDSEDE+   S   G N+SS+TKRCE+VNTMASFLWWIVGFYWVVSGG+ LLQNAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIAL CCLPCIIAILYA+  QEGASEADLS+LP+YRF+  NN EK  +GAG MIP ETSSGYLANERILLPEDA
Sbjct:   12 APLLRPRQGTAEQSARPTTLALLMGRATGRRGPSMLVRETAARELEERRADWGYSKPVVALDMMWNMSFVIVSIVMLICTARERPNTPIRLWICGYALQCGVHVVLVWLEYRRRNR--RRVRDEEQQQQPQHSDSDVNDSEDEDGNSSASGGFNQSSVTKRCESVNTMASFLWWIVGFYWVVSGGEALLQNAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASEADLSMLPRYRFE-ANNEEKSGVGAGTMIPTETSSGYLANERILLPEDA 302          

HSP 2 Score: 94.3597 bits (233), Expect = 1.283e-122
Identity = 43/58 (74.14%), Postives = 46/58 (79.31%), Query Frame = -1
Query:  415 ECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV*KNRR 588
            ECCICL SYEDG  L ALPCN HF STCI KWLK  ATCPLCKY ILKG+EQ+ K +R
Sbjct:  303 ECCICLHSYEDGTKLPALPCNPHFPSTCISKWLKKKATCPLCKYKILKGSEQILKKKR 360          
BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy TrEMBL
Match: A5BIX9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_014258 PE=4 SV=1)

HSP 1 Score: 374.4 bits (960), Expect = 7.010e-121
Identity = 226/294 (76.87%), Postives = 247/294 (84.01%), Query Frame = -2
Query:  705 APLLRPRQPDG-SAARPVSLAHLLGRATGRRGASMLVXXXXXXXXXXXXADWGYSKPVVALDMLWNTAFVVVSVVMLISTADETPNTPIRLWICAYALQCLLHVVLVWLEYRRRNSRRISVTDEERGEA---VSGDVNDSEDEE--DSGLFGSNESSITKRCETVNTMASFLWWIVGFYWVVSGGDILLQNAPRLYWLXXXXXXXXXXXXXFCVVLACLIGIALFCCLPCIIAILYAITEQEGASEADLSILPKYRFQIINNREKPSLGAGKMIPIETSSGYLANERILLPEDA 1568
            APLLRPRQ     +ARP +LA L+GRATGRRG SMLVRETAARELEERRADWGYSKPVVALDM+WN +FV+VS+VMLI TA E PNTPIRLWIC YALQC +HVVLVWLEYRRR+     V DEE+ +       DVNDSEDE+   S   G N+SS+TKRCE+VNTMASFLWWIVGFYWVVSGG+ LLQNAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIAL CCLPCIIAILYA+  QEGASEADLS+LP+YRF+  NN EK  +GAG M P ETSSGYLANERILLPEDA
Sbjct:   12 APLLRPRQGTAEQSARPTTLALLMGRATGRRGPSMLVRETAARELEERRADWGYSKPVVALDMMWNMSFVIVSIVMLICTARERPNTPIRLWICGYALQCGVHVVLVWLEYRRRSR--RRVRDEEQQQQPQHSDSDVNDSEDEDGNSSASGGFNQSSVTKRCESVNTMASFLWWIVGFYWVVSGGEALLQNAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASEADLSMLPRYRFE-ANNEEKSGVGAGTMFPTETSSGYLANERILLPEDA 302          

HSP 2 Score: 89.7373 bits (221), Expect = 7.010e-121
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = -1
Query:  463 ECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLC 588
            ECCICLSSYEDG +LHALPCNHHFHSTCI KWLKMNATCPLC
Sbjct:  303 ECCICLSSYEDGAELHALPCNHHFHSTCIAKWLKMNATCPLC 344          
BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy TrEMBL
Match: A0A059BE69_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G02105 PE=4 SV=1)

HSP 1 Score: 348.977 bits (894), Expect = 3.760e-120
Identity = 220/304 (72.37%), Postives = 248/304 (81.58%), Query Frame = -2
Query:  705 DPHAPLLRPRQPDGSAA----------RPVSLAHLLGRATGRRGASMLVXXXXXXXXXXXXADWGYSKPVVALDMLWNTAFVVVSVVMLISTADETPNTPIRLWICAYALQCLLHVVLVWLEYRRRNSRRISVTDEERGEAVSGDVNDSEDEE---DSGLFGSNESSITKRCETVNTMASFLWWIVGFYWVVSGGDILLQNAPRLYWLXXXXXXXXXXXXXFCVVLACLIGIALFCCLPCIIAILYAITEQEGASEADLSILPKYRFQIINNREKPSLGAGKMIPIETSSGYLANERILLPEDA 1577
            D  APLL  RQ  G+            R  SLA LLGRA GRRG SMLVRETAARELE+RRADWGYS+PVVALD++WNTAFV+VSVVML+ TADE PNTPIRLWIC YA QCL+HVVLVW+EYRR       V DEER +  +  VNDSEDEE   D+ L  + +S++TKRCE++NTMASFLWWIVGFYWVVSGGDILL  APRLYWLAVVFLAFDVFFAIFCVVLACLIGIAL CCLPCIIAILYA+  QEGASEADLSILPKY+F I++N EK  +GAGKM+P+ET+SGYLAN+R+LLPEDA
Sbjct:   22 DQQAPLLASRQGSGADDGGSGSSDSGPRQPSLAVLLGRAAGRRGPSMLVRETAARELEQRRADWGYSRPVVALDIMWNTAFVLVSVVMLVVTADEHPNTPIRLWICGYAAQCLVHVVLVWIEYRR--RSARRVRDEERQQNYNY-VNDSEDEEAGVDAALGSTAQSNVTKRCESINTMASFLWWIVGFYWVVSGGDILLAEAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASEADLSILPKYKFHILSNGEKTVVGAGKMVPVETTSGYLANDRLLLPEDA 322          

HSP 2 Score: 112.464 bits (280), Expect = 3.760e-120
Identity = 49/53 (92.45%), Postives = 52/53 (98.11%), Query Frame = -1
Query:  430 ECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV 588
            ECCICL+SYEDG +LHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQ+
Sbjct:  323 ECCICLTSYEDGAELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQI 375          
BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy TrEMBL
Match: V4KBJ8_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10018815mg PE=4 SV=1)

HSP 1 Score: 352.829 bits (904), Expect = 2.611e-119
Identity = 202/294 (68.71%), Postives = 236/294 (80.27%), Query Frame = -2
Query:  705 SDPHAPLLRPRQPDGSAARPVSLAHLLGRATGRRGASMLVXXXXXXXXXXXXADWGYSKPVVALDMLWNTAFVVVSVVMLISTADETPNTPIRLWICAYALQCLLHVVLVWLEYRRRNSRRISVTDEERGE-AVSG-DVNDSEDEEDSGLFGSNESSITKRCETVNTMASFLWWIVGFYWVVSGGDILLQNAPRLYWLXXXXXXXXXXXXXFCVVLACLIGIALFCCLPCIIAILYAITEQEGASEADLSILPKYRFQIINNREKPSLGAGKMIPIETSSGYLANERILLPEDA 1580
            SD + PLLR RQ      +PV +A LLGRA+GRRGASM+VRETAA+ELE+RRADWGYSKPVVALDMLWNTAFVVV++VML+ + DE PN PIR+WIC YALQCL+HVVLVWLE+R+RN+      D E GE +V G + +DSEDE+     G      TK CE+ NT+ SF+WWIVGFYW++SGGDILLQNA  LYWL  VFLAFDVFFA+FCV+LACLIGIAL CCLPCIIA+LYA+  QEGASEADLSILPKY+FQ++NN EK S G GKMIPIE  + Y  NER+LLPEDA
Sbjct:    2 SDSNTPLLRSRQNSPRRRQPV-IAVLLGRASGRRGASMVVRETAAQELEDRRADWGYSKPVVALDMLWNTAFVVVAIVMLLVSKDENPNVPIRVWICGYALQCLVHVVLVWLEFRKRNNTSRRGGDLEAGEGSVHGRNSHDSEDED-----GDERILSTKTCESFNTIISFVWWIVGFYWLISGGDILLQNASHLYWLTFVFLAFDVFFAVFCVILACLIGIALCCCLPCIIALLYAVAGQEGASEADLSILPKYKFQMMNNGEKQSDGGGKMIPIEAGTDYSGNERVLLPEDA 289          

HSP 2 Score: 106.301 bits (264), Expect = 2.611e-119
Identity = 47/52 (90.38%), Postives = 50/52 (96.15%), Query Frame = -1
Query:  433 ECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQ 588
            +CCICLSSYEDG +L ALPCNHHFHSTCIVKWLKMNATCPLCK+NILKGNEQ
Sbjct:  290 DCCICLSSYEDGTELVALPCNHHFHSTCIVKWLKMNATCPLCKFNILKGNEQ 341          
BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy TrEMBL
Match: I1KKV7_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 345.125 bits (884), Expect = 3.614e-118
Identity = 215/306 (70.26%), Postives = 243/306 (79.41%), Query Frame = -2
Query:  705 FTSSSKATMAASDPHAPLLRPRQPDGSAARPVSLAHLLGRATGRRGASMLVXXXXXXXXXXXXADWGYSKPVVALDMLWNTAFVVVSVVMLISTADETPNTPIRLWICAYALQCLLHVVLVWLEYRRR---NSRRISVTDEERGEAVSGDVNDSEDEEDSGLFGSNESSITKRCETVNTMASFLWWIVGFYWVVSGGDILLQNAPRLYWLXXXXXXXXXXXXXFCVVLACLIGIALFCCLPCIIAILYAITEQEGASEADLSILPKYRFQIINNREKPSLGAGKMIPIETSSGYLANERILLPEDA 1613
             +S + A+M A + HAPLLRP   D S A   +LA LLGRA GRRG SMLVRETAARELEERRADWGYSKPVVALDM WN AFVVV+ VML  T  E PNTPIR+WI  YALQCL+HV+LVWLEYRRR   +S       +   +A SGD + S+D + S  + S+ S  TKRCE +NT  SFLWWIVGFYWVVSGG+ILLQ+APRLYWL VVFLAFDVFFAIFCVVLACLIGIAL CCLPCIIAILYA+  QEGASEADLS+LPKYRF+I+++ +KPS GAG M+PIETSS YLANER LLPEDA
Sbjct:    1 MSSQTAASMEAPESHAPLLRPLT-DASRAPVPTLALLLGRA-GRRGPSMLVRETAARELEERRADWGYSKPVVALDMSWNMAFVVVTAVMLACTTAERPNTPIRVWIVGYALQCLVHVLLVWLEYRRRSRRDSHHGQRARDVESDAGSGDEDYSDDRDWSSGY-SSRSRFTKRCELLNTGVSFLWWIVGFYWVVSGGNILLQDAPRLYWLVVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASEADLSMLPKYRFRILSDEDKPSGGAGSMVPIETSSAYLANERTLLPEDA 303          

HSP 2 Score: 110.153 bits (274), Expect = 3.614e-118
Identity = 49/53 (92.45%), Postives = 51/53 (96.23%), Query Frame = -1
Query:  430 ECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV 588
            ECCICL SYEDG +LHALPCNHHFHS+CIVKWLKMNATCPLCKYNILKGNEQV
Sbjct:  304 ECCICLCSYEDGAELHALPCNHHFHSSCIVKWLKMNATCPLCKYNILKGNEQV 356          
BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy TrEMBL
Match: W9SPX8_9ROSA (E3 ubiquitin protein ligase RIE1 OS=Morus notabilis GN=L484_001391 PE=4 SV=1)

HSP 1 Score: 345.125 bits (884), Expect = 1.599e-117
Identity = 212/356 (59.55%), Postives = 242/356 (67.98%), Query Frame = -2
Query:  705 ATMAASDPHAPLLRPRQPDG------SAARPVSLAHLLGRATGRRGASMLVXXXXXXXXXXXXADWGYSKPVVALDMLWNTAFVVVSVVMLISTADETPNTPIRLWICAYALQCLLHVVLVWLEY----------RRRNSRRISVTDEERGEAVSGDVNDSEDEE-------------------------------------------DSGLFGSNESSITKRCETVNTMASFLWWIVGFYWVVSGGDILLQNAPRLYWLXXXXXXXXXXXXXFCVVLACLIGIALFCCLPCIIAILYAITEQEGASEADLSILPKYRFQIINNREKPSLGAGKMIPIETSSGYLANERILLPEDA 1595
            +T A+ + HAPLLRPRQ D       S ARPV+LA LLGRATGRRGASMLVRETAARELEERRADWGYSKPVVALDM+WNTAFVVVS+ ML+ TA+E PNTPIR+WIC YALQC++HV LV LEY          +    R  +  D E  + V  +   S                                               + G+     +S TKRCE+VNTM SFLWWIVGFYWVVSGG++LLQNAPRLYWL VVFLAFDV FA+FCVVLACLIG+AL CCLPCIIAILYA+  QEGASEADL  LP+YRF+I ++ EKPSLG G M+P+ETSS YLA ERILLPEDA
Sbjct:    2 STEASGESHAPLLRPRQGDEPSEPVISPARPVTLAALLGRATGRRGASMLVRETAARELEERRADWGYSKPVVALDMMWNTAFVVVSMAMLVITANERPNTPIRVWICGYALQCIVHVALVSLEYRRRNARRRRSQESPGRFDAANDTEEEDEVERNSESSGQSRVQIRQTVKNGKPIIVYHTLRAYLEGAGCPCFLVLPLLKIYLDFNDGVNCLGYASFTKRCESVNTMVSFLWWIVGFYWVVSGGNVLLQNAPRLYWLTVVFLAFDVLFAVFCVVLACLIGVALCCCLPCIIAILYAVAGQEGASEADLRFLPQYRFRISSDDEKPSLGEGTMVPVETSSRYLATERILLPEDA 357          

HSP 2 Score: 107.842 bits (268), Expect = 1.599e-117
Identity = 47/52 (90.38%), Postives = 49/52 (94.23%), Query Frame = -1
Query:  433 ECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQ 588
            ECCICLSSYEDG +LHALPCNHHFHS CIVKWL MNATCPLCKYNILKG+EQ
Sbjct:  358 ECCICLSSYEDGAELHALPCNHHFHSACIVKWLTMNATCPLCKYNILKGSEQ 409          
BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy TrEMBL
Match: A0A061E7X4_THECC (Zinc finger isoform 2 OS=Theobroma cacao GN=TCM_011052 PE=4 SV=1)

HSP 1 Score: 362.844 bits (930), Expect = 1.893e-117
Identity = 206/243 (84.77%), Postives = 215/243 (88.48%), Query Frame = -2
Query:  864 ASDPHAPLLRPRQPDGSAARPVSLAHLLGRATGRRGASMLVXXXXXXXXXXXXADWGYSKPVVALDMLWNTAFVVVSVVMLISTADETPNTPIRLWICAYALQCLLHVVLVWLEYRRRNSRRISVTDEERGEAVSGDVNDSEDEEDS---GLFGSNESSITKRCETVNTMASFLWWIVGFYWVVSGGDILLQNAPRLYWLXXXXXXXXXXXXXFCVVLACLIGIALFCCLPCIIAILYAITEQ 1583
            ASD HAPLLRPRQPD SAARP +LA LLGRATGRRGASMLVRETAARELEERRADWGYSKPVVALDMLWNTAFV VSV MLI T DE  NTPIRLWIC YALQCL+HVVLVWLEYRRRN RR S  DEERG+A SGD NDSEDE+D      FGSN+SS+TKRCE+VNTM SFLWWIVGFYWVVSGG+ LLQNAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIAL CCLPCIIAILYA+  Q
Sbjct:   13 ASDSHAPLLRPRQPDASAARPATLALLLGRATGRRGASMLVRETAARELEERRADWGYSKPVVALDMLWNTAFVAVSVAMLICTVDERTNTPIRLWICGYALQCLVHVVLVWLEYRRRNVRRTSARDEERGDATSGDANDSEDEQDGIERSAFGSNQSSVTKRCESVNTMVSFLWWIVGFYWVVSGGNYLLQNAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQ 255          
BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy TrEMBL
Match: V7CQN0_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G321300g PE=4 SV=1)

HSP 1 Score: 340.117 bits (871), Expect = 1.066e-116
Identity = 209/295 (70.85%), Postives = 231/295 (78.31%), Query Frame = -2
Query:  705 AASDPHAPLLRPRQPDGSAARPVSLAHLLGRATGRRGASMLVXXXXXXXXXXXXADWGYSKPVVALDMLWNTAFVVVSVVMLISTADETPNTPIRLWICAYALQCLLHVVLVWLEYRRRNSRRISVTDEERGEAVSGDVNDSEDEEDSGLFGSNESS-ITKRCETVNTMASFLWWIVGFYWVVSGGDILLQNAPRLYWLXXXXXXXXXXXXXFCVVLACLIGIALFCCLPCIIAILYAITEQEGASEADLSILPKYRFQIINNREKPSLGAGKMIPIETSSGYLANERILLPEDA 1586
            AA  PHAPLL PR PD +AAR   LA LLGR    RG S +VRETAARELEERRADW YSKPVVALD+ WN AFVVVSVVML  T  E PN PIR WIC YALQCL+HV LVWLEYRRR+   +   +E  G     DVNDS DEED G   S  S+  TKRC ++NTM S LWW+VGFYWVVSGGD+LLQ+APRLYWLAVVFLAFDVFFAIFCVVLACLIGIAL CCLPCIIAILYA+  QEGASE+DLS+LPK+RFQ+I+N E PS G G MIP+ET +GY  NERIL P+DA
Sbjct:    6 AAPQPHAPLLLPR-PDAAAARLPVLALLLGR----RGHSAVVRETAARELEERRADWTYSKPVVALDVTWNMAFVVVSVVMLACTVKEKPNMPIRWWICGYALQCLVHVALVWLEYRRRSD--VPRDEESGGHLDYDDVNDS-DEEDVGSSESYFSTGFTKRCTSLNTMVSLLWWMVGFYWVVSGGDVLLQDAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASESDLSVLPKFRFQMISNEETPSKGGGSMIPVETINGYSVNERILSPDDA 292          

HSP 2 Score: 110.153 bits (274), Expect = 1.066e-116
Identity = 48/53 (90.57%), Postives = 51/53 (96.23%), Query Frame = -1
Query:  430 ECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV 588
            ECCIC+SSYEDG +LH LPCNHHFHSTCIVKWLKMNATCPLCK+NILKGNEQV
Sbjct:  293 ECCICISSYEDGAELHVLPCNHHFHSTCIVKWLKMNATCPLCKFNILKGNEQV 345          
The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 23
Match NameE-valueIdentityDescription
RIE1_ARATH2.912e-10659.87E3 ubiquitin protein ligase RIE1 OS=Arabidopsis th... [more]
RING4_ARATH1.392e-6747.37E3 ubiquitin-protein ligase At4g11680 OS=Arabidops... [more]
RING1_ARATH2.780e-6647.26E3 ubiquitin-protein ligase At1g12760 OS=Arabidops... [more]
RING2_ARATH5.406e-6348.81E3 ubiquitin-protein ligase At1g63170 OS=Arabidops... [more]
RNF12_MOUSE9.402e-841.82E3 ubiquitin-protein ligase RLIM OS=Mus musculus G... [more]
RNF12_HUMAN1.058e-741.82E3 ubiquitin-protein ligase RLIM OS=Homo sapiens G... [more]
ZNRF3_XENLA1.345e-746.00E3 ubiquitin-protein ligase ZNRF3 OS=Xenopus laevi... [more]
RNF12_XENTR1.389e-741.82E3 ubiquitin-protein ligase RNF12 OS=Xenopus tropi... [more]
RNG1L_ARATH1.677e-735.42E3 ubiquitin-protein ligase RING1-like OS=Arabidop... [more]
RF12B_XENLA1.885e-741.82E3 ubiquitin-protein ligase RNF12-B OS=Xenopus lae... [more]

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BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0B0N8Z3_GOSAR1.057e-12569.68E3 ubiquitin ligase RIE1-like protein OS=Gossypium... [more]
M5XF21_PRUPE9.583e-12472.96Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
F6HFD5_VITVI1.283e-12277.55Putative uncharacterized protein OS=Vitis vinifera... [more]
A5BIX9_VITVI7.010e-12176.87Putative uncharacterized protein OS=Vitis vinifera... [more]
A0A059BE69_EUCGR3.760e-12072.37Uncharacterized protein OS=Eucalyptus grandis GN=E... [more]
V4KBJ8_EUTSA2.611e-11968.71Uncharacterized protein OS=Eutrema salsugineum GN=... [more]
I1KKV7_SOYBN3.614e-11870.26Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
W9SPX8_9ROSA1.599e-11759.55E3 ubiquitin protein ligase RIE1 OS=Morus notabili... [more]
A0A061E7X4_THECC1.893e-11784.77Zinc finger isoform 2 OS=Theobroma cacao GN=TCM_01... [more]
V7CQN0_PHAVU1.066e-11670.85Uncharacterized protein OS=Phaseolus vulgaris GN=P... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR14155:SF73SUBFAMILY NOT NAMEDcoord: 26..289
NoneNo IPR availablePANTHERPTHR14155RING FINGER DOMAIN-CONTAININGcoord: 26..289
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 87..108
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 214..219
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 195..213
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 9..17
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 139..194
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..25
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 26..86
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 220..249
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..8
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 120..138
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 250..324
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 18..25
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 109..119
NoneNo IPR availableSIGNALP_GRAM_NEGATIVESignalP-noTMSignalP-noTMcoord: 1..25
score: 0.735
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..25
score: 0.639
NoneNo IPR availableSIGNALP_GRAM_POSITIVESignalP-TMSignalP-TMcoord: 1..25
score: 0.631
NoneNo IPR availableTMHMMTMhelixcoord: 231..262
NoneNo IPR availableTMHMMTMhelixcoord: 194..216
NoneNo IPR availableTMHMMTMhelixcoord: 86..108
NoneNo IPR availableTMHMMTMhelixcoord: 118..140

Sequences
The following sequences are available for this feature:

contig sequence

>g.barbadense_cottongen_reftransV1_0097403 ID=g.barbadense_cottongen_reftransV1_0097403; Name=g.barbadense_cottongen_reftransV1_0097403; organism=Gossypium barbadense; type=contig; length=1917bp
ATGTGATTTCAACTGAACAAAACAACCATATAGGAAATGCAATGTGAAGA
GGATATACCGTTTATGATTGGGAGGTAACATTGAATCACTGATGCAACAA
ACAAATATACAATAAGCCAGTAATCTTTCACTCTTACCAATTATAATGAA
GCAAATAAAATACTGATAACATTTGAAGCATGAAAACCATCTCTATTTTC
ATTAAAGACGGTGGAAAAACTCGCACAGGGAGGGCCCAGCCCCAGAGGAA
TCAGGTCAACCCCAAAAGGTCATTTAAACAAAAAAAAAATGAAGCTAAGA
ATGAATTACCGCATGTCGGTCTTCATAGTTCAGTTTCAGCTCTTCATAAC
TTCCGTTTTTTCTATACATACACAGCATCATCGACAACTTAATCTGACAA
TGTTCAAGGCTTGCTCTCCTGTTCTTTCATACTTGCTCATTTCCCTTCAA
AATATTGTACTTACAGAGAGGACACGTTGCATTCATCTTAAGCCATTTCA
CAATACACGTTGAATGAAAATGATGGTTGCAAGGGAGAGCATGAAGATCC
ACGCCATCTTCGTATGAGCTTAGACATATACAACATTCCTGCAAAAACAG
AAAAAGAAAACACGGGCAATTATAATAGCAAAGCAGTCATCTTAGAGAGT
CATATTTAGCAAAGCAATCACCCCAAAGGGGAGTCAGATAGAGTTGTAAC
TTACTGCATCCTCAGGTAAGAGTATGCGCTCATTTGCCAAGTATCCACTG
CTTGTTTCTATGGGGATCATTTTTCCAGCTCCCAAACTAGGCTTCTCACG
GTTGTTTATAATCTGAAATCTATATTTTGGAAGGATACTAAGATCTGCTT
CCGATGCACCTTCCTGCTCCGTAATAGCATAAAGAATTGCAATGATGCAC
GGCAAGCAGCAGAAGAGAGCAATCCCAATCAAACACGCCAAAACAACACA
AAAGATTGCAAAGAACACATCAAATGCCAGAAAAACCACAGCCAACCAGT
ACAACCGCGGGGCATTCTGCAGAAGGATATCACCACCAGAAACTACCCAA
TAGAAGCCGACTATCCACCAAAGAAATGATGCCATGGTATTCACTGTTTC
ACATCGTTTAGTTATACTTGATTCATTTGAACCAAAAAGACCGCTGTCTT
CTTCATCTTCACTATCATTAACATCCCCAGAAACTGCTTCTCCTCTCTCC
TCATCCGTAACGGATATTCTCCTACTGTTCCTTCGCCTGTATTCCAACCA
CACTAAAACAACATGAAGCAAGCACTGCAAAGCATAAGCACAGATCCATA
ATCTAATAGGAGTATTGGGCGTCTCATCCGCCGTACTTATCAACATCACT
ACCGACACCACCACGAACGCTGTATTCCACAGCATGTCCAGTGCCACAAC
GGGCTTCGAGTACCCCCAGTCGGCCCTCCGCTCCTCCAACTCACGTGCCG
CTGTCTCCCTAACCAGCATGGAAGCGCCACGCCGTCCCGTGGCTCGCCCC
AATAAATGCGCCAACGATACAGGGCGAGCAGCCGAGCCATCAGGTTGACG
CGGACGAAGGAGAGGCGCGTGAGGATCAGACGCCGCCATGGTTGCTTTGG
ATGAAGATGTGAACAAACAAACAAAAAGAAAACACCTTTTTGATTTCGGG
GTTTTCAGAAATCTGGGGAGAACTCACAAAGAGAAGAAACACATAATTGG
AGTATTAACATTAGCAAGAATAAAAACCATATTTGTTGAAAATAAGAAAA
AGAAGGGAACGTCTGGTTTGGATTAAAGAGTTTTCGGTTTAGAACGGAAC
TGCCGTCCTCACTGTCAATTAGATGCTTTTATTGATTTTTATTTTGTTTT
CTGTCGGATTCTGCTTTGCTCTATTATTTTTGTTTCCTGAAAAGATAAAA
ACAGTGTGTTATGTATG
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