g.barbadense_cottongen_reftransV1_0097352, g.barbadense_cottongen_reftransV1_0097352 (contig) Gossypium barbadense
Overview
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0097352 vs. ExPASy TrEMBL
Match: R0HSP3_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10024596mg PE=4 SV=1) HSP 1 Score: 779.63 bits (2012), Expect = 0.000e+0 Identity = 392/499 (78.56%), Postives = 428/499 (85.77%), Query Frame = 2 Query: 881 MENHHPSTLLSMDSSA--HDEFDLD---KNRQSILSLPPDINLPLSAERSPPPQQPWNSDQCDILDVGLCSQAYETESYLPVS-KAGRKCTKRVDSIWGAWLFFSFYFKPALNEKSKAKIVRDSNGVSGFDKSDLKLDVFMVQHDMENMYMWVFKEKPENALGKMQLRSYMNGHSRQGERPFPFSVDKGFIRSHRMQRKHYRGLSNPQCVHGIELVPSPNLIALSEEDRKKWIELTGRDLNFTIPLEASDFSSWRNLPNTDFELERPQ-IIKNIPHSHSRKLLNGSGLNLSTQSASHTYGDGTDLSLVSNKRRKD--------DDCFLPVIPPSDRIPDMEIHPSE-PHWLNDFNGVMKSTYGPVTAAKAIYEDEAGYLIIISLPFVDLQRVKVSWRNTLTHGIIKLSCLSTSGMPFIKRHNRTFKLTDPAPEHCPPGEFVREIPLSTRIPEDADIEAYHDGPGSVLEIMVPKLRMVPEEHEIRVCLRPKHVGNDLMLT 2329 MENHHPSTLLSMDSSA H+E DL+ NRQS+LS PPDINLPLSAERSPPPQ PWN D CDILDVGL SQAYETE+YL V K GRKC KRVDSIWGAW FFSFYFKPALNEKSKAKIVRDSNG+SGFDKSDLKLDVF+VQHDMENMYMWVFKE+PENALGKMQLRSYMNGHSRQG+R FPFSV+KGF+RSHRMQRKHYRGLSNPQCVHGIELVP PNL L EE+RK+W+ELTGRDLNFTIP EASDF SWRNLPNTDFELERP +KN SHS+KLLNGSGLNLSTQ ++H+ G+ TDLS S+K+RKD ++C L V P P +E H +E P+W N+F G MK+ YGPVTAAK IYEDE GYLIIISLPFVDL VKVSWRNTLTHGIIK+SC+STS +PFIKRH+RTFKLTDPA EHCPPGEFVREIPLSTRIPEDA+IEAY+DGPGSVLEI+VPKLR PEEHE+RVCLRP GNDLMLT Sbjct: 1 MENHHPSTLLSMDSSASSHEELDLEMNNNNRQSLLSGPPDINLPLSAERSPPPQ-PWNLDSCDILDVGLGSQAYETENYLSVVPKVGRKCAKRVDSIWGAWFFFSFYFKPALNEKSKAKIVRDSNGISGFDKSDLKLDVFLVQHDMENMYMWVFKERPENALGKMQLRSYMNGHSRQGDRLFPFSVEKGFVRSHRMQRKHYRGLSNPQCVHGIELVPLPNLTCLDEEERKRWMELTGRDLNFTIPTEASDFGSWRNLPNTDFELERPTPSLKNPSASHSKKLLNGSGLNLSTQPSNHSNGEATDLSPSSHKKRKDLFSNGIHEEECCLTVNPIP---PVIEAHQNELPNWSNEFTGAMKNVYGPVTAAKTIYEDEEGYLIIISLPFVDLNSVKVSWRNTLTHGIIKVSCISTSRVPFIKRHDRTFKLTDPASEHCPPGEFVREIPLSTRIPEDANIEAYYDGPGSVLEILVPKLRAGPEEHEVRVCLRPHLSGNDLMLT 495
BLAST of g.barbadense_cottongen_reftransV1_0097352 vs. ExPASy TrEMBL
Match: D7LJV0_ARALL (Sodium-and lithium-tolerant 1 OS=Arabidopsis lyrata subsp. lyrata GN=SLT1 PE=4 SV=1) HSP 1 Score: 776.548 bits (2004), Expect = 0.000e+0 Identity = 389/498 (78.11%), Postives = 427/498 (85.74%), Query Frame = 2 Query: 881 MENHHPSTLLSMDSSA--HDEFDLD---KNRQSILSLPPDINLPLSAERSPPPQQPWNSDQCDILDVGLCSQAYETESYLPVS-KAGRKCTKRVDSIWGAWLFFSFYFKPALNEKSKAKIVRDSNGVSGFDKSDLKLDVFMVQHDMENMYMWVFKEKPENALGKMQLRSYMNGHSRQGERPFPFSVDKGFIRSHRMQRKHYRGLSNPQCVHGIELVPSPNLIALSEEDRKKWIELTGRDLNFTIPLEASDFSSWRNLPNTDFELERPQIIKNIPHSHSRKLLNGSGLNLSTQSASHTYGDGTDLSLVSNKRRKD--------DDCFLPVIPPSDRIPDMEIHPSE-PHWLNDFNGVMKSTYGPVTAAKAIYEDEAGYLIIISLPFVDLQRVKVSWRNTLTHGIIKLSCLSTSGMPFIKRHNRTFKLTDPAPEHCPPGEFVREIPLSTRIPEDADIEAYHDGPGSVLEIMVPKLRMVPEEHEIRVCLRPKHVGNDLMLT 2329 MENHHPSTLLSMDSSA H+E DL+ NRQS+LS PPDINLPLSAERSPPPQ PWN D CDILDVGL SQAYETE+Y+ V K GRKC KRVDS+WGAW FFSFYFKPALNEKSKAKIVRDSNG+SGFDKSDLKLDVF+VQHDMENMYMWVFKE+PENALGKMQLRSYMNGHSRQG+R FPFSV+KGF+RSHRMQRKHYRGLSNPQCVHGIELVP PNL L EE+RK+W+ELTGRDLNFTIP EASDF SWRNLPNTDFELERP +KN SHS+KLLNGSGLNLSTQ ++H+ G+ +DLS S+K+RKD ++C L V PP P +E H +E P W N+F+G MK+ YGPVTAAK IYEDE GYLIIISLPFVDL VKVSWRNTLTHGIIK+SCLSTS +PFIKRH+RTFKLTD A EHCPPGEFVREI LSTRIPEDA+IEAY+DGPGSVLEI+VPKLR PEEHE+RVCLRP GNDLMLT Sbjct: 1 MENHHPSTLLSMDSSASSHEELDLEMNNNNRQSLLSGPPDINLPLSAERSPPPQ-PWNLDVCDILDVGLGSQAYETENYMSVVPKVGRKCAKRVDSVWGAWFFFSFYFKPALNEKSKAKIVRDSNGISGFDKSDLKLDVFLVQHDMENMYMWVFKERPENALGKMQLRSYMNGHSRQGDRLFPFSVEKGFVRSHRMQRKHYRGLSNPQCVHGIELVPLPNLTCLDEEERKRWMELTGRDLNFTIPPEASDFGSWRNLPNTDFELERPTPLKNPTPSHSKKLLNGSGLNLSTQPSNHSNGEASDLSPSSHKKRKDLFSNGIHEEECCLTVNPPP---PVIEAHQNEPPTWSNEFSGAMKNVYGPVTAAKTIYEDEEGYLIIISLPFVDLNSVKVSWRNTLTHGIIKVSCLSTSRIPFIKRHDRTFKLTDSASEHCPPGEFVREISLSTRIPEDANIEAYYDGPGSVLEILVPKLRAGPEEHEVRVCLRPNLSGNDLMLT 494
BLAST of g.barbadense_cottongen_reftransV1_0097352 vs. ExPASy TrEMBL
Match: E4MYB5_EUTHA (mRNA, clone: RTFL01-47-M12 OS=Eutrema halophilum PE=2 SV=1) HSP 1 Score: 770.77 bits (1989), Expect = 0.000e+0 Identity = 387/508 (76.18%), Postives = 429/508 (84.45%), Query Frame = 2 Query: 851 MGASLLTTFSMENHHPSTLLSMDSSA--HDEFDLD-KNRQSILSLPPDINLPLSAERSPPPQQPWNSDQCDILDVGLCSQAYETESYLPVS-KAGRKCTKRVDSIWGAWLFFSFYFKPALNEKSKAKIVRDSNGVSGFDKSDLKLDVFMVQHDMENMYMWVFKEKPENALGKMQLRSYMNGHSRQGERPFPFSVDKGFIRSHRMQRKHYRGLSNPQCVHGIELVPSPNLIALSEEDRKKWIELTGRDLNFTIPLEASDFSSWRNLPNTDFELER--PQIIKNIPHSHSRKLLNGSGLNLSTQSASHTYGDGTDLSLVSNKRRKD--------DDCFLPVIPPSDRIPDMEIHPSE-PHWLNDFNGVMKSTYGPVTAAKAIYEDEAGYLIIISLPFVDLQRVKVSWRNTLTHGIIKLSCLSTSGMPFIKRHNRTFKLTDPAPEHCPPGEFVREIPLSTRIPEDADIEAYHDGPGSVLEIMVPKLRMVPEEHEIRVCLRPKHVGNDLMLT 2329 M + +MENHHPSTLLSMDSSA H+E DL+ NRQS+LS PPDINLPLSAERSPPPQ PWN D CDILDVGL SQAYETE+Y+ V K GRKC KRVDSIWGAW FFSFYFKPALN+KSKAKIVRDSNG+SGFDKSDLKLDVF+VQHDMENMYMWVFKE+PENALGKMQLRSYMNGHSRQG+R FPFSV+KGF+RSHRMQRKHYRGLSNPQCVHGIELVP PNL L EE+RK+W++LTGRDLNFTIP EASDF SWRNLPNTDFELER P + N SHS+KLLNGSGLNLSTQ +H+ G+ TDLS S+KRRKD + C L V PP P +E+H +E +W N+F+G MK+ YGPVTAAK IYEDE GYLIIISLPFVDL VKVSWRNTLTHGIIK+SC+STS +PF+KRH+RTFKLTDPA EHCPPGEFVREIPLSTRIPEDA+IEAY+DGPGSVLEI+VPKLR PEEHE++VC RP GNDLMLT Sbjct: 1 MVDTWFNVLTMENHHPSTLLSMDSSASSHEELDLEMNNRQSLLSGPPDINLPLSAERSPPPQ-PWNLDSCDILDVGLGSQAYETENYMSVVPKVGRKCAKRVDSIWGAWFFFSFYFKPALNDKSKAKIVRDSNGISGFDKSDLKLDVFLVQHDMENMYMWVFKERPENALGKMQLRSYMNGHSRQGDRLFPFSVEKGFVRSHRMQRKHYRGLSNPQCVHGIELVPLPNLTCLDEEERKRWMDLTGRDLNFTIPPEASDFGSWRNLPNTDFELERHPPPLKNNNSASHSKKLLNGSGLNLSTQPLNHSNGEATDLSPSSHKRRKDLFSNGIHEEQCSLTVNPPP---PAIEVHQNELQNWSNEFSGAMKNVYGPVTAAKTIYEDEEGYLIIISLPFVDLNSVKVSWRNTLTHGIIKVSCVSTSRIPFMKRHDRTFKLTDPASEHCPPGEFVREIPLSTRIPEDANIEAYYDGPGSVLEILVPKLRAGPEEHEVQVCFRPHLGGNDLMLT 504
BLAST of g.barbadense_cottongen_reftransV1_0097352 vs. ExPASy TrEMBL
Match: O80926_ARATH (Expressed protein OS=Arabidopsis thaliana GN=SLT1 PE=2 SV=1) HSP 1 Score: 770.385 bits (1988), Expect = 0.000e+0 Identity = 388/498 (77.91%), Postives = 425/498 (85.34%), Query Frame = 2 Query: 881 MENHHPSTLLSMDSSA--HDEFDLD--KNRQSILSLPPDINLPLSAERSPPPQQPWNSDQCDILDVGLCSQAYETESYLPVS-KAGRKCTKRVDSIWGAWLFFSFYFKPALNEKSKAKIVRDSNGVSGFDKSDLKLDVFMVQHDMENMYMWVFKEKPENALGKMQLRSYMNGHSRQGERPFPFSVDKGFIRSHRMQRKHYRGLSNPQCVHGIELVPSPNLIALSEEDRKKWIELTGRDLNFTIPLEASDFSSWRNLPNTDFELERPQ-IIKNIPHSHSRKLLNGSGLNLSTQSASHTYGDGTDLSLVSNKRRKD--------DDCFLPVIPPSDRIPDMEIHPSE-PHWLNDFNGVMKSTYGPVTAAKAIYEDEAGYLIIISLPFVDLQRVKVSWRNTLTHGIIKLSCLSTSGMPFIKRHNRTFKLTDPAPEHCPPGEFVREIPLSTRIPEDADIEAYHDGPGSVLEIMVPKLRMVPEEHEIRVCLRPKHVGNDLMLT 2329 MENHHPSTLLSMDSSA H+E DL+ NRQS+LS PPDINLPLSAERSPPP PWN D CDILDVGL SQAYETE+Y+ V K GRKC KRVDSIWGAW FFSFYFKPALNEKSKAKIVRDSNG+SGFDKSDLKLDVF+VQHDMENMYMWVFKE+PENALGKMQLRSYMNGHSRQG+R FPFSV+KGF+RSHRMQRKHYRGLSNPQCVHGIELVP PNL L EE+RK+W+ELTGRDLNFTIP EASDF SWRNLPNTDFELERP +KN +HS+KLLNGSGLNLSTQ ++H+ G+ TDLS S+K+RKD ++C L V P + P +E H +E P W N+F G MK+ YGPVTAAK IYEDE GYLIIISLPFVDL VKVSWRNTLTHGIIK+SCLSTS +PFIKRH+RTFKLTD A EHCPPGEFVREIPLS RIPEDA+IEAY+DGPGSVLEI+VPKLR PEEHE+RVCLRP GNDLMLT Sbjct: 1 MENHHPSTLLSMDSSASSHEELDLEMNNNRQSLLSGPPDINLPLSAERSPPPP-PWNLDACDILDVGLGSQAYETENYMSVVPKVGRKCAKRVDSIWGAWFFFSFYFKPALNEKSKAKIVRDSNGISGFDKSDLKLDVFLVQHDMENMYMWVFKERPENALGKMQLRSYMNGHSRQGDRLFPFSVEKGFVRSHRMQRKHYRGLSNPQCVHGIELVPLPNLTCLDEEERKRWMELTGRDLNFTIPPEASDFGSWRNLPNTDFELERPTPSLKNPTANHSKKLLNGSGLNLSTQPSNHSNGEATDLSPSSHKKRKDLFSNGIHEEECCLTVNP---QPPVIEAHQNELPTWSNEFTGAMKNVYGPVTAAKTIYEDEEGYLIIISLPFVDLNSVKVSWRNTLTHGIIKVSCLSTSRVPFIKRHDRTFKLTDSASEHCPPGEFVREIPLSNRIPEDANIEAYYDGPGSVLEILVPKLRAGPEEHEVRVCLRPNLGGNDLMLT 494
BLAST of g.barbadense_cottongen_reftransV1_0097352 vs. ExPASy TrEMBL
Match: A0A022RML5_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a026948mg PE=4 SV=1) HSP 1 Score: 769.615 bits (1986), Expect = 0.000e+0 Identity = 383/524 (73.09%), Postives = 423/524 (80.73%), Query Frame = 2 Query: 851 MGASLLTTFSMENHHPSTLLSMDSSA---HDEFDLDKNRQSILSLPPDINLPLSAERSPPPQQPWNSDQCDILDVGLCSQAYETESYLPVSKAGRKCTKRVDSIWGAWLFFSFYFKPALNEKSKAKIVRDSNGVSGFDKSDLKLDVFMVQHDMENMYMWVFKEKPENALGKMQLRSYMNGHSRQGERPFPFSVDKGFIRSHRMQRKHYRGLSNPQCVHGIELVPSPNLIALSEEDRKKWIELTGRDLNFTIPLEASDFSSWRNLPNTDFELER---------------PQIIKNIPHSHSRKLLNGSGLNLSTQSASHTYGDGT-----DLS-LVSNKRRKD-------DDCFLPVIPPSDRIPDMEIHPSEPHWLNDFNGVMKSTYGPVTAAKAIYEDEAGYLIIISLPFVDLQRVKVSWRNTLTHGIIKLSCLSTSGMPFIKRHNRTFKLTDPAPEHCPPGEFVREIPLSTRIPEDADIEAYHDGPGSVLEIMVPKLRMVPEEHEIRVCLRPKHVGNDLMLT 2329 M +LLTTF +ENHHPSTLLSMDSSA H+E DL+ NRQ +L+LPPDINLPLSAERSPPPQQPWNSD CDILDVGL +Q YETES+L V K G+K KRVDSIWGAW FFSFYFKP LNEKSKAKI RD NGVSGFDKSDL+LD FMVQHDMENMYMWVFKEKPENALGKMQLRSYMNGHSRQGERPFPFSVDKGF+RSHRMQRKHYRGLSNPQCVHG+E+V SP+L+ L E+DRK+W+ELTGR+LNFTIP EASDF SWRNLPNT+FELER N ++HS+KLLNGS LNLST A HT GD DLS + +NKR+KD DDC++ E+ + P WLN F+GVM + YGPVTAAK IYEDE GYLI++SLPFVDLQRVKVSWRNTLTHGIIK+SCLSTS PFIKRHNRTFKLTDP EHCPPGEFVREIPLSTRIPEDA+IEAY+DG G+VLEI+VPKLR PEEHE+RVCLRP H NDLMLT Sbjct: 1 MADALLTTFKLENHHPSTLLSMDSSATSAHEELDLEMNRQVVLTLPPDINLPLSAERSPPPQQPWNSDHCDILDVGLSTQIYETESFLTVPKIGKKIAKRVDSIWGAWFFFSFYFKPVLNEKSKAKITRDGNGVSGFDKSDLQLDTFMVQHDMENMYMWVFKEKPENALGKMQLRSYMNGHSRQGERPFPFSVDKGFVRSHRMQRKHYRGLSNPQCVHGVEVVFSPSLLGLDEDDRKRWMELTGRELNFTIPQEASDFGSWRNLPNTEFELERPPPPLKPTTTTTNSNNSNNINNSNNHSKKLLNGSVLNLST--AHHTNGDAAAHAIIDLSPITNNKRKKDFFIQGNGDDCYI------------EVQENGPQWLNGFSGVMNNIYGPVTAAKTIYEDEEGYLIVMSLPFVDLQRVKVSWRNTLTHGIIKVSCLSTSRTPFIKRHNRTFKLTDPNTEHCPPGEFVREIPLSTRIPEDANIEAYYDGQGTVLEILVPKLREGPEEHEVRVCLRPHHGANDLMLT 510 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0097352 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 0
BLAST of g.barbadense_cottongen_reftransV1_0097352 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0097352 ID=g.barbadense_cottongen_reftransV1_0097352; Name=g.barbadense_cottongen_reftransV1_0097352; organism=Gossypium barbadense; type=contig; length=2593bpback to top |