g.barbadense_cottongen_reftransV1_0097348, g.barbadense_cottongen_reftransV1_0097348 (contig) Gossypium barbadense
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy Swiss-Prot
Match: ADRM1_DROME (Proteasomal ubiquitin receptor ADRM1 homolog OS=Drosophila melanogaster GN=Rpn13 PE=1 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 1.671e-11 Identity = 28/60 (46.67%), Postives = 42/60 (70.00%), Query Frame = 3 Query: 1092 DQIIFPDEAVFEKVNQA-SGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQP 1268 D I+FPD+ +++V+Q +GRVY+LKF + R+ FFWMQEPK + D + C +N +N P Sbjct: 66 DLIVFPDDFEYKRVDQCKTGRVYVLKFKSSTRRMFFWMQEPKTDKDDEQCRRINELLNNP 125
BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy Swiss-Prot
Match: YOY4_SCHPO (Uncharacterized protein C342.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC342.04 PE=3 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 1.716e-10 Identity = 66/249 (26.51%), Postives = 120/249 (48.19%), Query Frame = 3 Query: 1092 DQIIFPDEAVFEKVNQAS-GRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPLELGVDEPDASEPLQAFEDMVEDDISSRAGNLT--------VTNLGAEAISDVTSSSGPVKLKDLQRILSSIGPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTPEDL---LELLQSPPFRQQVDSFTYVLRT-GQID-LSQFGI----DPSKYKFTVLSFLEALEDSVSKTSG 1784 D I+F E FEKV + + GR Y+LK+ + F+WMQE ++D+ +N++I L +P S+ + DM+E D ++ + + +GA ++ SS ++ +L++I + AG + L +ILKP + L+ + +RL Y+P TP +L L ++ SP + Q + SF+ L + G ++ +S G+ + + L FL+A+ VS+ +G Sbjct: 55 DIIVFSSECTFEKVTECTTGRAYMLKYPSSAHSLFYWMQEASDDNDTSYAERINSYIKDQDLL---DPARSD-VATVSDMMEVDTVEQSEPIAQPTESSKESSEIGAPNSDEINSSEA------VRNLLATI--SAQAGFGGSTVDLCEILKPSNLTDLLCQEGVIDRLMPYMPPD--TPNNLEGVLAIVSSPQYAQALRSFSQALNSPGGVNIISALGLSLDESANPNEGGALQFLKAIARFVSRNNG 289
BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy Swiss-Prot
Match: ADRM1_SCHPO (Probable proteasomal ubiquitin receptor ADRM1 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC16A11.16c PE=3 SV=1) HSP 1 Score: 57.3806 bits (137), Expect = 2.968e-7 Identity = 32/90 (35.56%), Postives = 45/90 (50.00%), Query Frame = 3 Query: 1092 DQIIFPDEAVFEKVNQAS-GRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPLEL-------------GVDEPDASEPLQAF 1319 D IIFP+EA F K+++ + GRVY LKF + + F+WMQE E D + +N I P+ G D+ S+ LQ F Sbjct: 73 DYIIFPEEAEFIKIDECTTGRVYALKFKSSSQIHFYWMQEYSDEKDKETASLINQLIADPVNTTRTINSHNNSSSRGTDDSSTSQLLQLF 162
BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy TrEMBL
Match: A0A067F3S0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g020703mg PE=4 SV=1) HSP 1 Score: 395.586 bits (1015), Expect = 6.926e-127 Identity = 204/258 (79.07%), Postives = 221/258 (85.66%), Query Frame = 3 Query: 1092 DQIIFPDEAVFEKVNQASGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPLE-LGVDEPDASEPLQAFEDMVEDDISSRAGNLTVTNLGAEAISDVTSSSGPVKLKDLQRILSSIGPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSKTS---GETQDEKDVRPQSCNRNDPMDESK 1853 DQI+FP EAVFEKVNQASGRVYILKFNTDDRKFF WMQEPKAE+DSQLC +VN FIN+PL + +E DAS PLQ EDMVEDD+SSRAGNL V NLG EAISDVTSSSGPVKL+DLQRI S+IGPA GLGL DILKPDLIMPLIETL LE+RLA YLPEGQWTPE+LLELLQSPPFRQQVDSFTYVL+TGQIDLSQFG+DPSKYKFTVLSFLEALEDSVSK S QD+K++ QSCNR+D MDESK Sbjct: 65 DQIVFPHEAVFEKVNQASGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRPLVFVNEEELDASVPLQVSEDMVEDDVSSRAGNLVVPNLGGEAISDVTSSSGPVKLEDLQRIFSNIGPA--------GLGLGDILKPDLIMPLIETLPLEQRLAPYLPEGQWTPEELLELLQSPPFRQQVDSFTYVLKTGQIDLSQFGVDPSKYKFTVLSFLEALEDSVSKLSESEESRQDDKNLMSQSCNRSDSMDESK 314 HSP 2 Score: 69.707 bits (169), Expect = 1.686e-9 Identity = 33/44 (75.00%), Postives = 37/44 (84.09%), Query Frame = 1 Query: 127 MGSSFGEAFPAMQETLLEFRAGKMMLEGKRVVPDTRKGLIRIAR 258 MGSS A PAMQE LLEFRAGKM +GK+VVPD+RKGL+RIAR Sbjct: 1 MGSSSTAASPAMQEILLEFRAGKMTFDGKKVVPDSRKGLVRIAR 44
BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy TrEMBL
Match: V4WI59_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10008923mg PE=4 SV=1) HSP 1 Score: 395.586 bits (1015), Expect = 6.926e-127 Identity = 204/258 (79.07%), Postives = 221/258 (85.66%), Query Frame = 3 Query: 1092 DQIIFPDEAVFEKVNQASGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPLE-LGVDEPDASEPLQAFEDMVEDDISSRAGNLTVTNLGAEAISDVTSSSGPVKLKDLQRILSSIGPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSKTS---GETQDEKDVRPQSCNRNDPMDESK 1853 DQI+FP EAVFEKVNQASGRVYILKFNTDDRKFF WMQEPKAE+DSQLC +VN FIN+PL + +E DAS PLQ EDMVEDD+SSRAGNL V NLG EAISDVTSSSGPVKL+DLQRI S+IGPA GLGL DILKPDLIMPLIETL LE+RLA YLPEGQWTPE+LLELLQSPPFRQQVDSFTYVL+TGQIDLSQFG+DPSKYKFTVLSFLEALEDSVSK S QD+K++ QSCNR+D MDESK Sbjct: 65 DQIVFPHEAVFEKVNQASGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRPLVFVNEEELDASVPLQVSEDMVEDDVSSRAGNLVVPNLGGEAISDVTSSSGPVKLEDLQRIFSNIGPA--------GLGLGDILKPDLIMPLIETLPLEQRLAPYLPEGQWTPEELLELLQSPPFRQQVDSFTYVLKTGQIDLSQFGVDPSKYKFTVLSFLEALEDSVSKLSESEESRQDDKNLMSQSCNRSDSMDESK 314 HSP 2 Score: 69.707 bits (169), Expect = 1.686e-9 Identity = 33/44 (75.00%), Postives = 37/44 (84.09%), Query Frame = 1 Query: 127 MGSSFGEAFPAMQETLLEFRAGKMMLEGKRVVPDTRKGLIRIAR 258 MGSS A PAMQE LLEFRAGKM +GK+VVPD+RKGL+RIAR Sbjct: 1 MGSSSTAASPAMQEILLEFRAGKMTFDGKKVVPDSRKGLVRIAR 44
BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy TrEMBL
Match: A0A097PT32_VITVI (Regulatory particle non-ATPase 13 (Fragment) OS=Vitis vinifera PE=2 SV=1) HSP 1 Score: 394.045 bits (1011), Expect = 2.411e-126 Identity = 203/254 (79.92%), Postives = 221/254 (87.01%), Query Frame = 3 Query: 1092 DQIIFPDEAVFEKVNQASGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPLE-LGVDEPDASEPLQAFEDMVEDDISSRAGNLTVTNLGAEAISDVTSSSGPVKLKDLQRILSSIGPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSKTSGETQDEKDVRPQSCNRNDPMDES 1850 DQI+FPDEAVFEKVNQASGR+YILKFNTD+RKFFFWMQEPKAE DSQLC +VN IN+PLE LG +E D S P+Q EDMVEDDISSRAGNL +LGAE SDVTS SGPVKL DLQRILS+I PA+ AG+PD GLGL DILKPDLI+PLIETL +E+RLASYLPEGQW PEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALED+V K S QD+KD R Q CN N+PMDE+ Sbjct: 60 DQIVFPDEAVFEKVNQASGRIYILKFNTDNRKFFFWMQEPKAEGDSQLCNSVNYHINRPLEFLGEEEQDVSGPVQISEDMVEDDISSRAGNLVGPSLGAEVTSDVTSLSGPVKLADLQRILSNIEPADGAGDPDEGLGLADILKPDLILPLIETLPMEQRLASYLPEGQWNPEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDTVCKAS---QDDKDSRSQ-CNDNEPMDEA 309
BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy TrEMBL
Match: I1K657_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 393.66 bits (1010), Expect = 6.134e-126 Identity = 198/258 (76.74%), Postives = 225/258 (87.21%), Query Frame = 3 Query: 1092 DQIIFPDEAVFEKVNQASGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPLEL-GVDEPDASEPLQAFEDMVEDDISSRAGNLTVTNLGAEAISDVTSSSGPVKLKDLQRILSSIGPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSK---TSGETQDEKDVRPQSCNRNDPMDESK 1853 DQIIFP+EA+FEKVNQ SGRVYILKFN+DDRKFFFWMQE A+ DSQLC +VN++IN+PLEL G +EPD S PLQ EDM EDDISSRA NL + NLG EA SDVTSS GPVKL+DLQRILS+IGPA+ +PDGGLGL DILKPDLIMPL++ L LE+RLA YLPEG+W+PE++LELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSK + QD++D+R QSCNR+DPMDES+ Sbjct: 65 DQIIFPNEAIFEKVNQTSGRVYILKFNSDDRKFFFWMQESNADGDSQLCSSVNDYINRPLELLGEEEPDGSLPLQISEDMTEDDISSRAANLGIPNLGVEATSDVTSS-GPVKLEDLQRILSNIGPADSIVDPDGGLGLGDILKPDLIMPLMDMLPLEQRLAPYLPEGKWSPEEILELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSKSVESEEARQDDQDLRSQSCNRHDPMDESQ 321 HSP 2 Score: 71.633 bits (174), Expect = 4.715e-10 Identity = 33/44 (75.00%), Postives = 37/44 (84.09%), Query Frame = 1 Query: 127 MGSSFGEAFPAMQETLLEFRAGKMMLEGKRVVPDTRKGLIRIAR 258 M SS + FPA+QE +LEFRAGKM LE KRVVPDTRKGL+RIAR Sbjct: 1 MSSSSADVFPAIQEVMLEFRAGKMFLEEKRVVPDTRKGLVRIAR 44
BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy TrEMBL
Match: A0A0B2NXB0_GLYSO (Proteasomal ubiquitin receptor ADRM1 OS=Glycine soja GN=glysoja_017560 PE=4 SV=1) HSP 1 Score: 393.66 bits (1010), Expect = 6.134e-126 Identity = 198/258 (76.74%), Postives = 225/258 (87.21%), Query Frame = 3 Query: 1092 DQIIFPDEAVFEKVNQASGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPLEL-GVDEPDASEPLQAFEDMVEDDISSRAGNLTVTNLGAEAISDVTSSSGPVKLKDLQRILSSIGPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSK---TSGETQDEKDVRPQSCNRNDPMDESK 1853 DQIIFP+EA+FEKVNQ SGRVYILKFN+DDRKFFFWMQE A+ DSQLC +VN++IN+PLEL G +EPD S PLQ EDM EDDISSRA NL + NLG EA SDVTSS GPVKL+DLQRILS+IGPA+ +PDGGLGL DILKPDLIMPL++ L LE+RLA YLPEG+W+PE++LELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSK + QD++D+R QSCNR+DPMDES+ Sbjct: 65 DQIIFPNEAIFEKVNQTSGRVYILKFNSDDRKFFFWMQESNADGDSQLCSSVNDYINRPLELLGEEEPDGSLPLQISEDMTEDDISSRAANLGIPNLGVEATSDVTSS-GPVKLEDLQRILSNIGPADSIVDPDGGLGLGDILKPDLIMPLMDMLPLEQRLAPYLPEGKWSPEEILELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSKSVESEEARQDDQDLRSQSCNRHDPMDESQ 321 HSP 2 Score: 71.633 bits (174), Expect = 4.715e-10 Identity = 33/44 (75.00%), Postives = 37/44 (84.09%), Query Frame = 1 Query: 127 MGSSFGEAFPAMQETLLEFRAGKMMLEGKRVVPDTRKGLIRIAR 258 M SS + FPA+QE +LEFRAGKM LE KRVVPDTRKGL+RIAR Sbjct: 1 MSSSSADVFPAIQEVMLEFRAGKMFLEEKRVVPDTRKGLVRIAR 44 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 13
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BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0097348 ID=g.barbadense_cottongen_reftransV1_0097348; Name=g.barbadense_cottongen_reftransV1_0097348; organism=Gossypium barbadense; type=contig; length=2544bpback to top |