g.barbadense_cottongen_reftransV1_0097348, g.barbadense_cottongen_reftransV1_0097348 (contig) Gossypium barbadense
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy Swiss-Prot
Match: ADRM1_DROME (Proteasomal ubiquitin receptor ADRM1 homolog OS=Drosophila melanogaster GN=Rpn13 PE=1 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 1.671e-11 Identity = 28/60 (46.67%), Postives = 42/60 (70.00%), Query Frame = 3 Query: 1092 DQIIFPDEAVFEKVNQA-SGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQP 1268 D I+FPD+ +++V+Q +GRVY+LKF + R+ FFWMQEPK + D + C +N +N P Sbjct: 66 DLIVFPDDFEYKRVDQCKTGRVYVLKFKSSTRRMFFWMQEPKTDKDDEQCRRINELLNNP 125
BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy Swiss-Prot
Match: YOY4_SCHPO (Uncharacterized protein C342.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC342.04 PE=3 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 1.716e-10 Identity = 66/249 (26.51%), Postives = 120/249 (48.19%), Query Frame = 3 Query: 1092 DQIIFPDEAVFEKVNQAS-GRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPLELGVDEPDASEPLQAFEDMVEDDISSRAGNLT--------VTNLGAEAISDVTSSSGPVKLKDLQRILSSIGPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTPEDL---LELLQSPPFRQQVDSFTYVLRT-GQID-LSQFGI----DPSKYKFTVLSFLEALEDSVSKTSG 1784 D I+F E FEKV + + GR Y+LK+ + F+WMQE ++D+ +N++I L +P S+ + DM+E D ++ + + +GA ++ SS ++ +L++I + AG + L +ILKP + L+ + +RL Y+P TP +L L ++ SP + Q + SF+ L + G ++ +S G+ + + L FL+A+ VS+ +G Sbjct: 55 DIIVFSSECTFEKVTECTTGRAYMLKYPSSAHSLFYWMQEASDDNDTSYAERINSYIKDQDLL---DPARSD-VATVSDMMEVDTVEQSEPIAQPTESSKESSEIGAPNSDEINSSEA------VRNLLATI--SAQAGFGGSTVDLCEILKPSNLTDLLCQEGVIDRLMPYMPPD--TPNNLEGVLAIVSSPQYAQALRSFSQALNSPGGVNIISALGLSLDESANPNEGGALQFLKAIARFVSRNNG 289
BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy Swiss-Prot
Match: ADRM1_SCHPO (Probable proteasomal ubiquitin receptor ADRM1 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC16A11.16c PE=3 SV=1) HSP 1 Score: 57.3806 bits (137), Expect = 2.968e-7 Identity = 32/90 (35.56%), Postives = 45/90 (50.00%), Query Frame = 3 Query: 1092 DQIIFPDEAVFEKVNQAS-GRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPLEL-------------GVDEPDASEPLQAF 1319 D IIFP+EA F K+++ + GRVY LKF + + F+WMQE E D + +N I P+ G D+ S+ LQ F Sbjct: 73 DYIIFPEEAEFIKIDECTTGRVYALKFKSSSQIHFYWMQEYSDEKDKETASLINQLIADPVNTTRTINSHNNSSSRGTDDSSTSQLLQLF 162
BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy TrEMBL
Match: A0A0D2P5J3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G024500 PE=4 SV=1) HSP 1 Score: 427.943 bits (1099), Expect = 9.224e-141 Identity = 214/218 (98.17%), Postives = 216/218 (99.08%), Query Frame = 3 Query: 1200 MQEPKAEDDSQLCCAVNNFINQPLELGVDEPDASEPLQAFEDMVEDDISSRAGNLTVTNLGAEAISDVTSSSGPVKLKDLQRILSSIGPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSKTSGETQDEKDVRPQSCNRNDPMDESK 1853 MQEPKAEDDSQLCCAVNNFINQPLELGVDE DASEPLQA EDMVEDDISSRAGNLT+TNLGAEAISDVTSSSGPVKL+DLQRILSSIGPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSKTSGETQDEKDVRPQSCNRNDPMDESK Sbjct: 1 MQEPKAEDDSQLCCAVNNFINQPLELGVDETDASEPLQASEDMVEDDISSRAGNLTLTNLGAEAISDVTSSSGPVKLEDLQRILSSIGPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSKTSGETQDEKDVRPQSCNRNDPMDESK 218
BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy TrEMBL
Match: A0A097PT29_THECC (Regulatory particle non-ATPase 13 (Fragment) OS=Theobroma cacao PE=2 SV=1) HSP 1 Score: 425.631 bits (1093), Expect = 7.220e-139 Identity = 215/231 (93.07%), Postives = 220/231 (95.24%), Query Frame = 3 Query: 1092 DQIIFPDEAVFEKVNQASGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPLE-LGVDEPDASEPLQAFEDMVEDDISSRAGNLTVTNLGAEAISDVTSSSGPVKLKDLQRILSSIGPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSKTS 1781 DQIIFPDEAVFEKVNQASGRVYILKFNTDDRKFFFWMQEPKAEDDSQLC +VNN INQPLE LG +EPDAS PLQ EDMVEDDISSRAGNLTVTNLGAEAISDVTSSSGPVKL+DLQRILSSIGPAE+AG+PDGGL L DILKPDLIMPLIETL LEERLASYLPEGQWTPEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSK S Sbjct: 60 DQIIFPDEAVFEKVNQASGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCSSVNNIINQPLEFLGDEEPDASAPLQVSEDMVEDDISSRAGNLTVTNLGAEAISDVTSSSGPVKLEDLQRILSSIGPAEIAGDPDGGLELGDILKPDLIMPLIETLPLEERLASYLPEGQWTPEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSKMS 290 HSP 2 Score: 76.6406 bits (187), Expect = 7.832e-12 Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = 1 Query: 145 EAFPAMQETLLEFRAGKMMLEGKRVVPDTRKGLIRIAR 258 EAFPAMQETLLEFRAGKM+LEGKRVVPDTRKGLIRI R Sbjct: 2 EAFPAMQETLLEFRAGKMLLEGKRVVPDTRKGLIRITR 39
BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy TrEMBL
Match: A0A067FEZ5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g020703mg PE=4 SV=1) HSP 1 Score: 409.838 bits (1052), Expect = 3.567e-132 Identity = 207/258 (80.23%), Postives = 227/258 (87.98%), Query Frame = 3 Query: 1092 DQIIFPDEAVFEKVNQASGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPLE-LGVDEPDASEPLQAFEDMVEDDISSRAGNLTVTNLGAEAISDVTSSSGPVKLKDLQRILSSIGPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSKTS---GETQDEKDVRPQSCNRNDPMDESK 1853 DQI+FP EAVFEKVNQASGRVYILKFNTDDRKFF WMQEPKAE+DSQLC +VN FIN+PL + +E DAS PLQ EDMVEDD+SSRAGNL V NLG EAISDVTSSSGPVKL+DLQRI S+IGPA++ +PDGGLGL DILKPDLIMPLIETL LE+RLA YLPEGQWTPE+LLELLQSPPFRQQVDSFTYVL+TGQIDLSQFG+DPSKYKFTVLSFLEALEDSVSK S QD+K++ QSCNR+D MDESK Sbjct: 65 DQIVFPHEAVFEKVNQASGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRPLVFVNEEELDASVPLQVSEDMVEDDVSSRAGNLVVPNLGGEAISDVTSSSGPVKLEDLQRIFSNIGPADITEDPDGGLGLGDILKPDLIMPLIETLPLEQRLAPYLPEGQWTPEELLELLQSPPFRQQVDSFTYVLKTGQIDLSQFGVDPSKYKFTVLSFLEALEDSVSKLSESEESRQDDKNLMSQSCNRSDSMDESK 322 HSP 2 Score: 69.707 bits (169), Expect = 1.830e-9 Identity = 33/44 (75.00%), Postives = 37/44 (84.09%), Query Frame = 1 Query: 127 MGSSFGEAFPAMQETLLEFRAGKMMLEGKRVVPDTRKGLIRIAR 258 MGSS A PAMQE LLEFRAGKM +GK+VVPD+RKGL+RIAR Sbjct: 1 MGSSSTAASPAMQEILLEFRAGKMTFDGKKVVPDSRKGLVRIAR 44
BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy TrEMBL
Match: V4UQ41_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10008923mg PE=4 SV=1) HSP 1 Score: 409.838 bits (1052), Expect = 3.567e-132 Identity = 207/258 (80.23%), Postives = 227/258 (87.98%), Query Frame = 3 Query: 1092 DQIIFPDEAVFEKVNQASGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPLE-LGVDEPDASEPLQAFEDMVEDDISSRAGNLTVTNLGAEAISDVTSSSGPVKLKDLQRILSSIGPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSKTS---GETQDEKDVRPQSCNRNDPMDESK 1853 DQI+FP EAVFEKVNQASGRVYILKFNTDDRKFF WMQEPKAE+DSQLC +VN FIN+PL + +E DAS PLQ EDMVEDD+SSRAGNL V NLG EAISDVTSSSGPVKL+DLQRI S+IGPA++ +PDGGLGL DILKPDLIMPLIETL LE+RLA YLPEGQWTPE+LLELLQSPPFRQQVDSFTYVL+TGQIDLSQFG+DPSKYKFTVLSFLEALEDSVSK S QD+K++ QSCNR+D MDESK Sbjct: 65 DQIVFPHEAVFEKVNQASGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRPLVFVNEEELDASVPLQVSEDMVEDDVSSRAGNLVVPNLGGEAISDVTSSSGPVKLEDLQRIFSNIGPADITEDPDGGLGLGDILKPDLIMPLIETLPLEQRLAPYLPEGQWTPEELLELLQSPPFRQQVDSFTYVLKTGQIDLSQFGVDPSKYKFTVLSFLEALEDSVSKLSESEESRQDDKNLMSQSCNRSDSMDESK 322 HSP 2 Score: 69.707 bits (169), Expect = 1.830e-9 Identity = 33/44 (75.00%), Postives = 37/44 (84.09%), Query Frame = 1 Query: 127 MGSSFGEAFPAMQETLLEFRAGKMMLEGKRVVPDTRKGLIRIAR 258 MGSS A PAMQE LLEFRAGKM +GK+VVPD+RKGL+RIAR Sbjct: 1 MGSSSTAASPAMQEILLEFRAGKMTFDGKKVVPDSRKGLVRIAR 44
BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy TrEMBL
Match: M5XDA5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008705mg PE=4 SV=1) HSP 1 Score: 402.519 bits (1033), Expect = 2.239e-129 Identity = 204/258 (79.07%), Postives = 223/258 (86.43%), Query Frame = 3 Query: 1092 DQIIFPDEAVFEKVNQASGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPLELGVDE-PDASEPLQAFEDMVEDDISSRAGNLTVTNLGAEAISDVTSSSGPVKLKDLQRILSSIGPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSKTS---GETQDEKDVRPQSCNRNDPMDESK 1853 DQIIFPDEAVFEKVNQASGRVY+LKFNTDDRKFFFWMQEPKAE+DS LC +VN ++N+PLE +E PDAS PLQ ED+VEDDISSRAG L N GAE SDVTSSSGPVKL+DLQRILS+I PA+ A +PD GL L DILKPDLIMPLIETL LE+RL SYLPEGQW+PED+LELLQSPPFRQQ+DSF YVLRTGQIDLSQFG+DPSKYKFTVLSFLEALEDSVSK S QD KD+R +SCNRNDPMDESK Sbjct: 65 DQIIFPDEAVFEKVNQASGRVYLLKFNTDDRKFFFWMQEPKAENDSHLCSSVNYYLNRPLEFLDEEGPDASVPLQVSEDVVEDDISSRAGILVEPNFGAEVSSDVTSSSGPVKLEDLQRILSNIDPADTALDPDEGLSLGDILKPDLIMPLIETLQLEQRLESYLPEGQWSPEDILELLQSPPFRQQMDSFAYVLRTGQIDLSQFGVDPSKYKFTVLSFLEALEDSVSKASESDESRQDNKDLRSESCNRNDPMDESK 322 HSP 2 Score: 68.9366 bits (167), Expect = 3.680e-9 Identity = 31/44 (70.45%), Postives = 36/44 (81.82%), Query Frame = 1 Query: 127 MGSSFGEAFPAMQETLLEFRAGKMMLEGKRVVPDTRKGLIRIAR 258 MGSS A P MQE +LEFRAGKM+ EGK+V PDTRKGL+RIA+ Sbjct: 1 MGSSSNAAIPQMQEIMLEFRAGKMVFEGKKVAPDTRKGLVRIAK 44
BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy TrEMBL
Match: D7T0N7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0065g00450 PE=4 SV=1) HSP 1 Score: 400.593 bits (1028), Expect = 1.141e-128 Identity = 204/256 (79.69%), Postives = 223/256 (87.11%), Query Frame = 3 Query: 1092 DQIIFPDEAVFEKVNQASGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPLE-LGVDEPDASEPLQAFEDMVEDDISSRAGNLTVTNLGAEAISDVTSSSGPVKLKDLQRILSSIGPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSKTSGETQDEKDVRPQ-SCNRNDPMDESK 1853 DQI+FPDEAVFEKVNQASGR+YILKFNTD+RKFFFWMQEPKAE DSQLC +VN IN+PLE LG +E D S P+Q EDMVEDDISSRAGNL +LGAE SDVTS SGPVKL DLQRILS+I PA+ AG+PD GLGL DILKPDLI+PLIETL +E+RLASYLPEGQW PEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALED+V K S QD+KD R Q SCN N+PMDE++ Sbjct: 65 DQIVFPDEAVFEKVNQASGRIYILKFNTDNRKFFFWMQEPKAEGDSQLCNSVNYHINRPLEFLGEEEQDVSGPVQISEDMVEDDISSRAGNLVGPSLGAEVTSDVTSLSGPVKLADLQRILSNIEPADGAGDPDEGLGLADILKPDLILPLIETLPMEQRLASYLPEGQWNPEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDTVCKASQSGQDDKDSRSQTSCNDNEPMDEAQ 320 HSP 2 Score: 68.1662 bits (165), Expect = 6.249e-9 Identity = 30/44 (68.18%), Postives = 35/44 (79.55%), Query Frame = 1 Query: 127 MGSSFGEAFPAMQETLLEFRAGKMMLEGKRVVPDTRKGLIRIAR 258 MGSS + FP MQE +LEFRAGKM+ EG RV PD RKGL+RIA+ Sbjct: 1 MGSSSADTFPVMQEIMLEFRAGKMVFEGTRVTPDARKGLVRIAK 44
BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy TrEMBL
Match: I1KPP8_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 399.053 bits (1024), Expect = 4.833e-128 Identity = 200/258 (77.52%), Postives = 227/258 (87.98%), Query Frame = 3 Query: 1092 DQIIFPDEAVFEKVNQASGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPLEL-GVDEPDASEPLQAFEDMVEDDISSRAGNLTVTNLGAEAISDVTSSSGPVKLKDLQRILSSIGPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSK---TSGETQDEKDVRPQSCNRNDPMDESK 1853 DQIIFP+EA+FEKVNQ SGRVYILKFN+DDRKFFFWMQE A+DDSQLC +VN++IN+PLEL G +EPD S PLQ EDM EDDISSRA NL + NLG EA SDVTSS GPVKL+DLQRILS+IGPA+ +PDGGLGL DILKPDLIMPL++TL LE+RLA YLPEG+W+PE++LELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSK + QD++D+R QSCNR+DPMDES+ Sbjct: 65 DQIIFPNEAIFEKVNQTSGRVYILKFNSDDRKFFFWMQESNADDDSQLCSSVNDYINRPLELLGEEEPDGSLPLQVSEDMAEDDISSRAANLGIPNLGVEATSDVTSS-GPVKLEDLQRILSNIGPADSIVDPDGGLGLGDILKPDLIMPLMDTLPLEQRLAPYLPEGEWSPEEILELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSKSVESEEARQDDRDLRSQSCNRHDPMDESQ 321 HSP 2 Score: 68.1662 bits (165), Expect = 5.454e-9 Identity = 32/44 (72.73%), Postives = 36/44 (81.82%), Query Frame = 1 Query: 127 MGSSFGEAFPAMQETLLEFRAGKMMLEGKRVVPDTRKGLIRIAR 258 M SS + FPA+ E +LEFRAGKM LE KRVVPDTRKGL+RIAR Sbjct: 1 MSSSSADVFPAILEVMLEFRAGKMFLEEKRVVPDTRKGLVRIAR 44
BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy TrEMBL
Match: I1KPP9_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 398.667 bits (1023), Expect = 5.228e-128 Identity = 200/258 (77.52%), Postives = 227/258 (87.98%), Query Frame = 3 Query: 1092 DQIIFPDEAVFEKVNQASGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPLEL-GVDEPDASEPLQAFEDMVEDDISSRAGNLTVTNLGAEAISDVTSSSGPVKLKDLQRILSSIGPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSK---TSGETQDEKDVRPQSCNRNDPMDESK 1853 DQIIFP+EA+FEKVNQ SGRVYILKFN+DDRKFFFWMQE A+DDSQLC +VN++IN+PLEL G +EPD S PLQ EDM EDDISSRA NL + NLG EA SDVTSS GPVKL+DLQRILS+IGPA+ +PDGGLGL DILKPDLIMPL++TL LE+RLA YLPEG+W+PE++LELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSK + QD++D+R QSCNR+DPMDES+ Sbjct: 62 DQIIFPNEAIFEKVNQTSGRVYILKFNSDDRKFFFWMQESNADDDSQLCSSVNDYINRPLELLGEEEPDGSLPLQVSEDMAEDDISSRAANLGIPNLGVEATSDVTSS-GPVKLEDLQRILSNIGPADSIVDPDGGLGLGDILKPDLIMPLMDTLPLEQRLAPYLPEGEWSPEEILELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSKSVESEEARQDDRDLRSQSCNRHDPMDESQ 318
BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy TrEMBL
Match: A0A097PT03_SOYBN (Regulatory particle non-ATPase 13 (Fragment) OS=Glycine max PE=2 SV=1) HSP 1 Score: 396.741 bits (1018), Expect = 2.867e-127 Identity = 199/254 (78.35%), Postives = 225/254 (88.58%), Query Frame = 3 Query: 1092 DQIIFPDEAVFEKVNQASGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPLEL-GVDEPDASEPLQAFEDMVEDDISSRAGNLTVTNLGAEAISDVTSSSGPVKLKDLQRILSSIGPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSKTSGETQDEKDVRPQSCNRNDPMDES 1850 DQIIFP+EA+FEKVNQ SGRVYILKFN+DDRKFFFWMQE A+DDSQLC +VN++IN+PLEL G +EPD S PLQ EDM EDDISSRA NL + NLG EA SDVTSS GPVKL+DLQRILS+IGPA+ +PDGGLGL DILKPDLIMPL++TL LE+RLA YLPEG+W+PE++LELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSK+ QD++D+R Q CNR+DPMDES Sbjct: 60 DQIIFPNEAIFEKVNQTSGRVYILKFNSDDRKFFFWMQESNADDDSQLCSSVNDYINRPLELLGEEEPDGSLPLQVSEDMAEDDISSRAANLGIPNLGVEATSDVTSS-GPVKLEDLQRILSNIGPADSIVDPDGGLGLGDILKPDLIMPLMDTLPLEQRLAPYLPEGEWSPEEILELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSKSVEARQDDRDLRSQ-CNRHDPMDES 311 HSP 2 Score: 63.1586 bits (152), Expect = 2.641e-7 Identity = 29/39 (74.36%), Postives = 33/39 (84.62%), Query Frame = 1 Query: 142 GEAFPAMQETLLEFRAGKMMLEGKRVVPDTRKGLIRIAR 258 + FPA+ E +LEFRAGKM LE KRVVPDTRKGL+RIAR Sbjct: 1 ADVFPAILEVMLEFRAGKMFLEEKRVVPDTRKGLVRIAR 39
BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy TrEMBL
Match: B9HBB4_POPTR (Adhesion regulating molecule family protein OS=Populus trichocarpa GN=POPTR_0006s07840g PE=4 SV=1) HSP 1 Score: 396.741 bits (1018), Expect = 2.881e-127 Identity = 202/256 (78.91%), Postives = 223/256 (87.11%), Query Frame = 3 Query: 1092 DQIIFPDEAVFEKVNQASGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPLE-LGVDEPDASEPLQAFEDMVEDDISSRAGNLTVTNLGAEAISDVTSSSGPVKLKDLQRILSSIGPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSKTSGE-TQDEKDVRPQSCNRNDPMDESK 1853 DQIIFP+EAVFEKVNQ SGRVYILKFNTDDRK FFWMQEPKAE+DSQLC +VN +IN PLE L +EPDA+ PLQ EDM+ED++SSRAG+L V NLGAEAISDVTSSSGPVK++DLQRILS+IG GLGL D+LKPDLIMPLIETLSLEE L S+LPEG WTPED+L+LLQSPPFRQQVDSFTYVLRTGQIDLSQFG+DPSKYKFTVLSFLEALEDSVSK S E TQ+ KD+RPQS NR+DPMDE K Sbjct: 66 DQIIFPEEAVFEKVNQVSGRVYILKFNTDDRKLFFWMQEPKAEEDSQLCSSVNYYINLPLEFLDEEEPDAAAPLQVSEDMLEDNVSSRAGDLVVPNLGAEAISDVTSSSGPVKMEDLQRILSNIGAR--------GLGLGDLLKPDLIMPLIETLSLEEGLTSHLPEGHWTPEDILDLLQSPPFRQQVDSFTYVLRTGQIDLSQFGVDPSKYKFTVLSFLEALEDSVSKMSEESTQEGKDLRPQSHNRDDPMDEGK 313 HSP 2 Score: 65.855 bits (159), Expect = 3.000e-8 Identity = 29/45 (64.44%), Postives = 36/45 (80.00%), Query Frame = 1 Query: 124 LMGSSFGEAFPAMQETLLEFRAGKMMLEGKRVVPDTRKGLIRIAR 258 + SS EA PAMQE +LEFRAGKM+ +GK+VVPD RKGL+R+ R Sbjct: 1 MTASSSAEAIPAMQEIMLEFRAGKMVFDGKKVVPDLRKGLVRVGR 45 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 13
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BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0097348 ID=g.barbadense_cottongen_reftransV1_0097348; Name=g.barbadense_cottongen_reftransV1_0097348; organism=Gossypium barbadense; type=contig; length=2544bpback to top |