g.barbadense_cottongen_reftransV1_0097348, g.barbadense_cottongen_reftransV1_0097348 (contig) Gossypium barbadense

Overview


Name	g.barbadense_cottongen_reftransV1_0097348
Unique Name	g.barbadense_cottongen_reftransV1_0097348
Type	contig
Organism	Gossypium barbadense (Sea Island cotton)
Sequence length	2544

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Dt08	chromosome	g.barbadense_cottongen_reftransV1_0097348:1..2544 . Dt08:2323563..2328731 -

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium barbadense CottonGen RefTrans V1	2016-11-01
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot	2016-11-01
InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1	2016-11-02
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL	2016-11-02

Homology

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy Swiss-Prot
Match: ADRM1_DROME (Proteasomal ubiquitin receptor ADRM1 homolog OS=Drosophila melanogaster GN=Rpn13 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.671e-11
Identity = 28/60 (46.67%), Postives = 42/60 (70.00%), Query Frame = 3

Query: 1092 DQIIFPDEAVFEKVNQA-SGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQP 1268
            D I+FPD+  +++V+Q  +GRVY+LKF +  R+ FFWMQEPK + D + C  +N  +N P
Sbjct:   66 DLIVFPDDFEYKRVDQCKTGRVYVLKFKSSTRRMFFWMQEPKTDKDDEQCRRINELLNNP 125

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy Swiss-Prot
Match: YOY4_SCHPO (Uncharacterized protein C342.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC342.04 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 1.716e-10
Identity = 66/249 (26.51%), Postives = 120/249 (48.19%), Query Frame = 3

Query: 1092 DQIIFPDEAVFEKVNQAS-GRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPLELGVDEPDASEPLQAFEDMVEDDISSRAGNLT--------VTNLGAEAISDVTSSSGPVKLKDLQRILSSIGPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTPEDL---LELLQSPPFRQQVDSFTYVLRT-GQID-LSQFGI----DPSKYKFTVLSFLEALEDSVSKTSG 1784
            D I+F  E  FEKV + + GR Y+LK+ +     F+WMQE   ++D+     +N++I     L   +P  S+ +    DM+E D   ++  +          + +GA    ++ SS        ++ +L++I  +  AG     + L +ILKP  +  L+    + +RL  Y+P    TP +L   L ++ SP + Q + SF+  L + G ++ +S  G+      +  +   L FL+A+   VS+ +G
Sbjct:   55 DIIVFSSECTFEKVTECTTGRAYMLKYPSSAHSLFYWMQEASDDNDTSYAERINSYIKDQDLL---DPARSD-VATVSDMMEVDTVEQSEPIAQPTESSKESSEIGAPNSDEINSSEA------VRNLLATI--SAQAGFGGSTVDLCEILKPSNLTDLLCQEGVIDRLMPYMPPD--TPNNLEGVLAIVSSPQYAQALRSFSQALNSPGGVNIISALGLSLDESANPNEGGALQFLKAIARFVSRNNG 289

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy Swiss-Prot
Match: ADRM1_SCHPO (Probable proteasomal ubiquitin receptor ADRM1 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC16A11.16c PE=3 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 2.968e-7
Identity = 32/90 (35.56%), Postives = 45/90 (50.00%), Query Frame = 3

Query: 1092 DQIIFPDEAVFEKVNQAS-GRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPLEL-------------GVDEPDASEPLQAF 1319
            D IIFP+EA F K+++ + GRVY LKF +  +  F+WMQE   E D +    +N  I  P+               G D+   S+ LQ F
Sbjct:   73 DYIIFPEEAEFIKIDECTTGRVYALKFKSSSQIHFYWMQEYSDEKDKETASLINQLIADPVNTTRTINSHNNSSSRGTDDSSTSQLLQLF 162

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy TrEMBL
Match: A0A0D2QQH4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G024500 PE=4 SV=1)

HSP 1 Score: 505.368 bits (1300), Expect = 1.973e-169
Identity = 250/254 (98.43%), Postives = 252/254 (99.21%), Query Frame = 3

Query: 1092 DQIIFPDEAVFEKVNQASGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPLELGVDEPDASEPLQAFEDMVEDDISSRAGNLTVTNLGAEAISDVTSSSGPVKLKDLQRILSSIGPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSKTSGETQDEKDVRPQSCNRNDPMDESK 1853
            DQIIFPDEAVFEKVNQASGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPLELGVDE DASEPLQA EDMVEDDISSRAGNLT+TNLGAEAISDVTSSSGPVKL+DLQRILSSIGPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSKTSGETQDEKDVRPQSCNRNDPMDESK
Sbjct:   54 DQIIFPDEAVFEKVNQASGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPLELGVDETDASEPLQASEDMVEDDISSRAGNLTLTNLGAEAISDVTSSSGPVKLEDLQRILSSIGPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSKTSGETQDEKDVRPQSCNRNDPMDESK 307

HSP 2 Score: 68.9366 bits (167), Expect = 2.991e-9
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 1

Query:  160 MQETLLEFRAGKMMLEGKRVVPDTRKGLIRIAR 258
            MQETLLEFRAGKMMLEGKRVVPDTRKGLIRIAR
Sbjct:    1 MQETLLEFRAGKMMLEGKRVVPDTRKGLIRIAR 33

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy TrEMBL
Match: A0A0D2QXS7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G024500 PE=4 SV=1)

HSP 1 Score: 505.368 bits (1300), Expect = 2.960e-169
Identity = 250/254 (98.43%), Postives = 252/254 (99.21%), Query Frame = 3

Query: 1092 DQIIFPDEAVFEKVNQASGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPLELGVDEPDASEPLQAFEDMVEDDISSRAGNLTVTNLGAEAISDVTSSSGPVKLKDLQRILSSIGPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSKTSGETQDEKDVRPQSCNRNDPMDESK 1853
            DQIIFPDEAVFEKVNQASGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPLELGVDE DASEPLQA EDMVEDDISSRAGNLT+TNLGAEAISDVTSSSGPVKL+DLQRILSSIGPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSKTSGETQDEKDVRPQSCNRNDPMDESK
Sbjct:   65 DQIIFPDEAVFEKVNQASGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPLELGVDETDASEPLQASEDMVEDDISSRAGNLTLTNLGAEAISDVTSSSGPVKLEDLQRILSSIGPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSKTSGETQDEKDVRPQSCNRNDPMDESK 318

HSP 2 Score: 91.6633 bits (226), Expect = 1.117e-16
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 1

Query:  127 MGSSFGEAFPAMQETLLEFRAGKMMLEGKRVVPDTRKGLIRIAR 258
            MGSSFGEAFPAMQETLLEFRAGKMMLEGKRVVPDTRKGLIRIAR
Sbjct:    1 MGSSFGEAFPAMQETLLEFRAGKMMLEGKRVVPDTRKGLIRIAR 44

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy TrEMBL
Match: A0A0D2MSH1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G024500 PE=4 SV=1)

HSP 1 Score: 501.13 bits (1289), Expect = 9.385e-168
Identity = 248/252 (98.41%), Postives = 250/252 (99.21%), Query Frame = 3

Query: 1098 IIFPDEAVFEKVNQASGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPLELGVDEPDASEPLQAFEDMVEDDISSRAGNLTVTNLGAEAISDVTSSSGPVKLKDLQRILSSIGPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSKTSGETQDEKDVRPQSCNRNDPMDESK 1853
            IIFPDEAVFEKVNQASGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPLELGVDE DASEPLQA EDMVEDDISSRAGNLT+TNLGAEAISDVTSSSGPVKL+DLQRILSSIGPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSKTSGETQDEKDVRPQSCNRNDPMDESK
Sbjct:   65 IIFPDEAVFEKVNQASGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPLELGVDETDASEPLQASEDMVEDDISSRAGNLTLTNLGAEAISDVTSSSGPVKLEDLQRILSSIGPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSKTSGETQDEKDVRPQSCNRNDPMDESK 316

HSP 2 Score: 91.6633 bits (226), Expect = 1.196e-16
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 1

Query:  127 MGSSFGEAFPAMQETLLEFRAGKMMLEGKRVVPDTRKGLIRIAR 258
            MGSSFGEAFPAMQETLLEFRAGKMMLEGKRVVPDTRKGLIRIAR
Sbjct:    1 MGSSFGEAFPAMQETLLEFRAGKMMLEGKRVVPDTRKGLIRIAR 44

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy TrEMBL
Match: A0A0D2RS48_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G024500 PE=4 SV=1)

HSP 1 Score: 499.204 bits (1284), Expect = 7.226e-167
Identity = 250/259 (96.53%), Postives = 252/259 (97.30%), Query Frame = 3

Query: 1092 DQIIFPDEAVFEKVNQASGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPLELGVDEPDASEPLQAFEDMVEDDISSRAGNLTVTNLGAEAISDVTSSSGPVKLKDLQRILSSIGPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPE-----GQWTPEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSKTSGETQDEKDVRPQSCNRNDPMDESK 1853
            DQIIFPDEAVFEKVNQASGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPLELGVDE DASEPLQA EDMVEDDISSRAGNLT+TNLGAEAISDVTSSSGPVKL+DLQRILSSIGPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPE     GQWTPEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSKTSGETQDEKDVRPQSCNRNDPMDESK
Sbjct:   65 DQIIFPDEAVFEKVNQASGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPLELGVDETDASEPLQASEDMVEDDISSRAGNLTLTNLGAEAISDVTSSSGPVKLEDLQRILSSIGPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPELLVFQGQWTPEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSKTSGETQDEKDVRPQSCNRNDPMDESK 323

HSP 2 Score: 91.6633 bits (226), Expect = 1.281e-16
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 1

Query:  127 MGSSFGEAFPAMQETLLEFRAGKMMLEGKRVVPDTRKGLIRIAR 258
            MGSSFGEAFPAMQETLLEFRAGKMMLEGKRVVPDTRKGLIRIAR
Sbjct:    1 MGSSFGEAFPAMQETLLEFRAGKMMLEGKRVVPDTRKGLIRIAR 44

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy TrEMBL
Match: A0A0D2P5J7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G024500 PE=4 SV=1)

HSP 1 Score: 491.886 bits (1265), Expect = 3.606e-164
Identity = 246/254 (96.85%), Postives = 248/254 (97.64%), Query Frame = 3

Query: 1092 DQIIFPDEAVFEKVNQASGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPLELGVDEPDASEPLQAFEDMVEDDISSRAGNLTVTNLGAEAISDVTSSSGPVKLKDLQRILSSIGPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSKTSGETQDEKDVRPQSCNRNDPMDESK 1853
            DQIIFPDEAVFEKVNQASGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPL    DE DASEPLQA EDMVEDDISSRAGNLT+TNLGAEAISDVTSSSGPVKL+DLQRILSSIGPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSKTSGETQDEKDVRPQSCNRNDPMDESK
Sbjct:   65 DQIIFPDEAVFEKVNQASGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPL----DETDASEPLQASEDMVEDDISSRAGNLTLTNLGAEAISDVTSSSGPVKLEDLQRILSSIGPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSKTSGETQDEKDVRPQSCNRNDPMDESK 314

HSP 2 Score: 92.0485 bits (227), Expect = 9.892e-17
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 1

Query:  127 MGSSFGEAFPAMQETLLEFRAGKMMLEGKRVVPDTRKGLIRIAR 258
            MGSSFGEAFPAMQETLLEFRAGKMMLEGKRVVPDTRKGLIRIAR
Sbjct:    1 MGSSFGEAFPAMQETLLEFRAGKMMLEGKRVVPDTRKGLIRIAR 44

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy TrEMBL
Match: A0A0D2QQI1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G024500 PE=4 SV=1)

HSP 1 Score: 488.034 bits (1255), Expect = 1.131e-162
Identity = 245/254 (96.46%), Postives = 247/254 (97.24%), Query Frame = 3

Query: 1092 DQIIFPDEAVFEKVNQASGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPLELGVDEPDASEPLQAFEDMVEDDISSRAGNLTVTNLGAEAISDVTSSSGPVKLKDLQRILSSIGPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSKTSGETQDEKDVRPQSCNRNDPMDESK 1853
            DQIIFPDEAVFEKVNQASGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPLELGVDE DASEPLQA EDMVEDDISSRAGNLT+TNLGAEAISDVTSSSGPVKL+DLQRILSSIGPAEVA     GLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSKTSGETQDEKDVRPQSCNRNDPMDESK
Sbjct:   65 DQIIFPDEAVFEKVNQASGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPLELGVDETDASEPLQASEDMVEDDISSRAGNLTLTNLGAEAISDVTSSSGPVKLEDLQRILSSIGPAEVA-----GLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSKTSGETQDEKDVRPQSCNRNDPMDESK 313

HSP 2 Score: 92.0485 bits (227), Expect = 1.010e-16
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 1

Query:  127 MGSSFGEAFPAMQETLLEFRAGKMMLEGKRVVPDTRKGLIRIAR 258
            MGSSFGEAFPAMQETLLEFRAGKMMLEGKRVVPDTRKGLIRIAR
Sbjct:    1 MGSSFGEAFPAMQETLLEFRAGKMMLEGKRVVPDTRKGLIRIAR 44

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy TrEMBL
Match: A0A0B0N9P8_GOSAR (Proteasomal ubiquitin receptor ADRM1 OS=Gossypium arboreum GN=F383_08425 PE=4 SV=1)

HSP 1 Score: 479.945 bits (1234), Expect = 1.778e-159
Identity = 243/254 (95.67%), Postives = 246/254 (96.85%), Query Frame = 3

Query: 1092 DQIIFPDEAVFEKVNQASGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPLELGVDEPDASEPLQAFEDMVEDDISSRAGNLTVTNLGAEAISDVTSSSGPVKLKDLQRILSSIGPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSKTSGETQDEKDVRPQSCNRNDPMDESK 1853
            DQIIFPDEAVFEKVNQASGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPLELGVDEPDASEPLQAFEDMVEDDISSRAGNLTVTNLGAEAISDVTSSSGPVKL+DLQRILS+IGPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLELLQSPPFRQQ      VLRTGQIDLSQFGIDP+  KFTVLSFLEALEDSVSKTSGETQDEKDVRPQSCNRNDPMDESK
Sbjct:   65 DQIIFPDEAVFEKVNQASGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPLELGVDEPDASEPLQAFEDMVEDDISSRAGNLTVTNLGAEAISDVTSSSGPVKLEDLQRILSNIGPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLELLQSPPFRQQ------VLRTGQIDLSQFGIDPN--KFTVLSFLEALEDSVSKTSGETQDEKDVRPQSCNRNDPMDESK 310

HSP 2 Score: 91.6633 bits (226), Expect = 1.305e-16
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 1

Query:  127 MGSSFGEAFPAMQETLLEFRAGKMMLEGKRVVPDTRKGLIRIAR 258
            MGSSFGEAFPAMQETLLEFRAGKMMLEGKRVVPDTRKGLIRIAR
Sbjct:    1 MGSSFGEAFPAMQETLLEFRAGKMMLEGKRVVPDTRKGLIRIAR 44

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy TrEMBL
Match: A0A061GS42_THECC (Regulatory particle non-ATPase 13 OS=Theobroma cacao GN=TCM_039785 PE=4 SV=1)

HSP 1 Score: 462.996 bits (1190), Expect = 3.878e-152
Identity = 236/258 (91.47%), Postives = 244/258 (94.57%), Query Frame = 3

Query: 1092 DQIIFPDEAVFEKVNQASGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPLE-LGVDEPDASEPLQAFEDMVEDDISSRAGNLTVTNLGAEAISDVTSSSGPVKLKDLQRILSSIGPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSKT--SGET-QDEKDVRPQSCNRNDPMDESK 1853
            DQIIFPDEAVFEKVNQASGRVYILKFNTDDRKFFFWMQEPKAEDDSQLC +VNN INQPLE LG +EPDAS PLQ  EDMVEDDISSRAGNLTVTNLGAEAISDVTSSSGPVKL+DLQRILSSIGPAE+AG+PDGGL L DILKPDLIMPLIETL LEERLASYLPEGQWTPEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSK   SG+T QD+KD+RPQSCNRNDPMDESK
Sbjct:  106 DQIIFPDEAVFEKVNQASGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCSSVNNIINQPLEFLGDEEPDASAPLQVSEDMVEDDISSRAGNLTVTNLGAEAISDVTSSSGPVKLEDLQRILSSIGPAEIAGDPDGGLELGDILKPDLIMPLIETLPLEERLASYLPEGQWTPEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSKMSESGDTWQDDKDLRPQSCNRNDPMDESK 363

HSP 2 Score: 83.1889 bits (204), Expect = 9.908e-14
Identity = 40/44 (90.91%), Postives = 41/44 (93.18%), Query Frame = 1

Query:  127 MGSSFGEAFPAMQETLLEFRAGKMMLEGKRVVPDTRKGLIRIAR 258
            MGSS  EAFPAMQETLLEFRAGKM+LEGKRVVPDTRKGLIRI R
Sbjct:    1 MGSSSTEAFPAMQETLLEFRAGKMLLEGKRVVPDTRKGLIRITR 44

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy TrEMBL
Match: A0A097PT04_GOSRA (Regulatory particle non-ATPase 13 (Fragment) OS=Gossypium raimondii PE=2 SV=1)

HSP 1 Score: 454.521 bits (1168), Expect = 5.249e-150
Identity = 229/236 (97.03%), Postives = 231/236 (97.88%), Query Frame = 3

Query: 1092 DQIIFPDEAVFEKVNQASGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPLELGVDEPDASEPLQAFEDMVEDDISSRAGNLTVTNLGAEAISDVTSSSGPVKLKDLQRILSSIGPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSKTSGETQDE 1799
            DQIIFPDEAVFEKVNQASGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPLELGVDE DASEPLQA EDMVEDDISSRAGNLT+TNLGAEAISDVTSSSGPVKL+DLQRILSSIGPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSKTS   QDE
Sbjct:   60 DQIIFPDEAVFEKVNQASGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPLELGVDETDASEPLQASEDMVEDDISSRAGNLTLTNLGAEAISDVTSSSGPVKLEDLQRILSSIGPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSKTS---QDE 292

HSP 2 Score: 81.6481 bits (200), Expect = 1.855e-13
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 1

Query:  142 GEAFPAMQETLLEFRAGKMMLEGKRVVPDTRKGLIRIAR 258
            GEAFPAMQETLLEFRAGKMMLEGKRVVPDTRKGLIRIAR
Sbjct:    1 GEAFPAMQETLLEFRAGKMMLEGKRVVPDTRKGLIRIAR 39

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy TrEMBL
Match: A0A0D2QXT0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G024500 PE=4 SV=1)

HSP 1 Score: 436.032 bits (1120), Expect = 9.831e-143
Identity = 225/254 (88.58%), Postives = 227/254 (89.37%), Query Frame = 3

Query: 1092 DQIIFPDEAVFEKVNQASGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPLELGVDEPDASEPLQAFEDMVEDDISSRAGNLTVTNLGAEAISDVTSSSGPVKLKDLQRILSSIGPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSKTSGETQDEKDVRPQSCNRNDPMDESK 1853
            DQIIFPDEAVFEK                         EPKAEDDSQLCCAVNNFINQPLELGVDE DASEPLQA EDMVEDDISSRAGNLT+TNLGAEAISDVTSSSGPVKL+DLQRILSSIGPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSKTSGETQDEKDVRPQSCNRNDPMDESK
Sbjct:   65 DQIIFPDEAVFEK-------------------------EPKAEDDSQLCCAVNNFINQPLELGVDETDASEPLQASEDMVEDDISSRAGNLTLTNLGAEAISDVTSSSGPVKLEDLQRILSSIGPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSKTSGETQDEKDVRPQSCNRNDPMDESK 293

HSP 2 Score: 91.6633 bits (226), Expect = 9.205e-17
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 1

Query:  127 MGSSFGEAFPAMQETLLEFRAGKMMLEGKRVVPDTRKGLIRIAR 258
            MGSSFGEAFPAMQETLLEFRAGKMMLEGKRVVPDTRKGLIRIAR
Sbjct:    1 MGSSFGEAFPAMQETLLEFRAGKMMLEGKRVVPDTRKGLIRIAR 44

The following BLAST results are available for this feature:

BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy Swiss-Prot
BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy TrEMBL

BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 13


Match Name	E-value	Identity	Description
ADRM1_DROME	1.671e-11	46.67	Proteasomal ubiquitin receptor ADRM1 homolog OS=Dr...	[more]
YOY4_SCHPO	1.716e-10	26.51	Uncharacterized protein C342.04 OS=Schizosaccharom...	[more]
ADRM1_SCHPO	2.968e-7	35.56	Probable proteasomal ubiquitin receptor ADRM1 homo...	[more]

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BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0D2QQH4_GOSRA	1.973e-169	98.43	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2QXS7_GOSRA	2.960e-169	98.43	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2MSH1_GOSRA	9.385e-168	98.41	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2RS48_GOSRA	7.226e-167	96.53	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2P5J7_GOSRA	3.606e-164	96.85	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2QQI1_GOSRA	1.131e-162	96.46	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0B0N9P8_GOSAR	1.778e-159	95.67	Proteasomal ubiquitin receptor ADRM1 OS=Gossypium ...	[more]
A0A061GS42_THECC	3.878e-152	91.47	Regulatory particle non-ATPase 13 OS=Theobroma cac...	[more]
A0A097PT04_GOSRA	5.249e-150	97.03	Regulatory particle non-ATPase 13 (Fragment) OS=Go...	[more]
A0A0D2QXT0_GOSRA	9.831e-143	88.58	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032368	UCH-binding domain	PFAM	PF16550	RPN13_C	coord: 81..186 e-value: 1.6E-25 score: 89.3
IPR006773	26S proteasome complex ubiquitin receptor, subunit Rpn13	PANTHER	PTHR12225	ADHESION REGULATING MOLECULE 1 110 KDA CELL MEMBRANE GLYCOPROTEIN	coord: 1..218

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.barbadense_cottongen_reftransV1_0097348 ID=g.barbadense_cottongen_reftransV1_0097348; Name=g.barbadense_cottongen_reftransV1_0097348; organism=Gossypium barbadense; type=contig; length=2544bp
CTCGGCCGCTTTTGATATACAGAATCTGAGCTTTCCAATCTTTACATGCA
AAAGAAAATTTGATCAAATTTCTGCGAAAAATAAAGCTATATATATAAAA
AGCAGCTATTGAAAGAAGTGGAGCTGATGGGTTCGTCTTTCGGTGAAGCT
TTTCCAGCAATGCAGGAAACTTTGCTGGAGTTTCGTGCTGGTAAAATGAT
GTTGGAAGGAAAAAGGGTTGTCCCTGATACACGTAAAGGGCTCATTCGCA
TAGCTAGGGTATTATCAATTAAAGAACTTTCGGTTATACCTATTTTATCT
TTTGGGTTTTATTAGTTTTTTGCATTATGTGTTTAGATAATGGAATTGTT
ATCTGTTTTAGATTATTTTTATCTGAAACTGTTGTGAGCTTACCACGTTT
CTGTTCCAGGGTGAGGAGGGACTGGTTCATTTTCAGTGGCTTGATCGGAC
TCAAAATGTTATTGAAGATGTATCCCGCTTCCTATAGTTTGCTTTTGTTG
TTTTACTTAAAATATTTTATTCTGTATGAACATTGAGGCTTGCAGGTTTT
ATCGTAGCAGCCTTTCAGTTTTGACTTTTATATGCTGCTTCTGATTTTGT
AGTCTAGGAATCAATTTTGCATGTACGTGTCTGTGTATATGCATGCATTT
CATTCTAAAATGTAGTTTGGGGGTCTTTTAGAGTTTAATATAAGTTCAGC
ATGTATGCTTGTTAACACATTGTATGTGTATACTTTTCATGTTAACTATT
AGTCACATTAGTTCTATCTTCTCATCTTGTTAATATCTGGAATAGTTTGC
TATGTTGTCCATCTTTGCTATTTAGAAGTCAGAAGCAATGTTGTCTGATA
GGTCACATTGTTTTATTTTATGTATAAGTTTCCATCTGGTTAACTGATAT
GGTTAAGAATTGATTTTTAATTCTTTTCCTTTAATAGCTTAGTTTCATTG
TTAATATTCAGACCTGTGATTAACATTCTATGCCTACTTTACCCTGTTAT
TATTGCTTGATTCATAAAAATGTTAATATAACATGTTGTGAGTACTCTTT
TTTCTTTCCCTTTCCCTTTTCCTTCACATGACATATTATAGGATCAGATT
ATTTTCCCCGATGAGGCTGTTTTTGAGAAGGTTAATCAAGCATCAGGCAG
GGTTTACATATTAAAGTTCAATACCGACGACCGGAAGTTCTTTTTCTGGA
TGCAGGAGCCGAAAGCTGAAGATGACTCACAATTATGTTGCGCGGTCAAT
AATTTCATCAATCAACCATTAGAACTTGGTGTAGATGAGCCTGATGCTTC
TGAGCCTTTGCAAGCGTTTGAAGACATGGTTGAAGATGATATTTCATCAA
GAGCTGGAAACTTGACTGTTACAAACTTAGGTGCTGAAGCGATTAGTGAT
GTAACCTCTTCATCAGGGCCAGTTAAATTGAAAGACTTGCAAAGAATACT
GAGCAGTATTGGTCCAGCAGAGGTAGCTGGTGAGCCAGATGGAGGCTTGG
GGTTGGATGATATTTTGAAGCCAGATTTGATAATGCCATTAATTGAGACA
TTGTCATTGGAAGAGCGATTAGCTTCATATTTACCAGAGGGTCAATGGAC
ACCTGAGGATTTGTTAGAGTTGCTGCAGAGTCCTCCTTTCCGTCAGCAAG
TAGATTCATTTACCTATGTACTTCGAACCGGACAGATAGATTTGTCTCAG
TTCGGTATTGATCCAAGTAAATATAAGTTCACCGTTTTATCTTTCCTTGA
GGCACTTGAAGATTCTGTTTCCAAAACTTCTGGAGAAACACAAGATGAAA
AAGATGTAAGACCTCAATCCTGTAATCGTAATGACCCCATGGATGAGAGC
AAGTGACAGATAATTTCATCTGCTACCGTTCCCATCACTCTCATTTATCA
TAGGAGAGAATAGTTCATCCCTGTTTTAATTTATTCTTCTTGTTTGGGTG
GGTGTTCTGGAAAAAAAAAAGGCAGAAAAAAGAAAGCAATGAAGAATGGA
AATGGTTTTTATTGTGGTTCAAAGTTTTAAGCTATTGTATAATACAACCC
AAAAAACAAAAACAAAAAAAGAAGAAAAAATTGTGTTGAAGATTAAGTGG
ATAATTTCTTGGTTTTTTTAGGACCATTTTTAATACCTTTTGAACATACA
CGGAAAGCATTGAATTGGTGAAAACATATAAAGGTCAAGTGTATGTTGGT
CTGTTGGATTTTTGTTACATTCGAATTCCTATCAGTTTTTTGTGTGTTTT
ATTGCTCTATGGTTATGGTTTCCATTAGACCTGAAAATTGGGCTTGAGTC
AATCTAGGTCTGGTCATTTTGGGTTTTAAATTTTCAGGTTTAGATCATTT
TAAGTTTGGATTGTTTCTGACTAGAATCATTTTGGGTTTGTATTGTTGGG
ATTTGTTTGTTAGGGTTTTTGAGTCAAGATCATAGGTTTTTTCAGGGTAA
AGTGCCATGGAGGTCTTTGTATTAGGAGTCAAATTATATTTTGCCCCCTA
CTTAAAAAAGGGTAAATTAGTTCTTGTATGTTAGATTAAAGTGC

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR032368	RPN13_DEUBAD
IPR006773	Rpn13/ADRM1

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus
GO:0005737	cytoplasm

Search form

g.barbadense_cottongen_reftransV1_0097348, g.barbadense_cottongen_reftransV1_0097348 (contig) Gossypium barbadense

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