g.barbadense_cottongen_reftransV1_0097348, g.barbadense_cottongen_reftransV1_0097348 (contig) Gossypium barbadense
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy Swiss-Prot
Match: RPN13_ARATH (26S proteasome regulatory subunit RPN13 OS=Arabidopsis thaliana GN=RPN13 PE=1 SV=2) HSP 1 Score: 328.946 bits (842), Expect = 1.781e-103 Identity = 165/238 (69.33%), Postives = 196/238 (82.35%), Query Frame = 3 Query: 1092 DQIIFPDEAVFEKVNQASGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPLELGVDEPDASEPLQAFEDMVEDDISSRAGNLTVTNLGAEAISDVTSSSGPVKLKDLQRILSSI--GPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSKTSGETQDE 1799 DQI+FPDEA+FEKVNQ+S RVYILKFN+DDRK FFWMQEP+AE D++LC +VN ++NQPLE +E A+ + EDM ED+ SSRAGNL V NL +E +SDVTSSSGPVKL DLQRIL+++ GP +AG+ D GL L DILKP+LIMPL+E L ++ERL+S+LPEG ED+LELLQSPPFRQQVD+FTYVLRTGQIDL+QFGIDPSKYKFTV SFLEALEDSVS S + DE Sbjct: 63 DQIVFPDEALFEKVNQSSDRVYILKFNSDDRKLFFWMQEPRAEGDAELCSSVNQYLNQPLEFPGEEGLAAAITEELEDMAEDNTSSRAGNLVVPNLSSE-VSDVTSSSGPVKLADLQRILNNLSGGPVGIAGDQDEGLALGDILKPELIMPLLEALPVQERLSSHLPEGHSRAEDILELLQSPPFRQQVDAFTYVLRTGQIDLTQFGIDPSKYKFTVDSFLEALEDSVSTQSRDAMDE 299 HSP 2 Score: 67.3958 bits (163), Expect = 1.100e-10 Identity = 31/41 (75.61%), Postives = 34/41 (82.93%), Query Frame = 1 Query: 136 SFGEAFPAMQETLLEFRAGKMMLEGKRVVPDTRKGLIRIAR 258 S EAFP MQE +LEFRAGKM L+G RVVPD RKGL+RIAR Sbjct: 2 SSSEAFPVMQEIMLEFRAGKMSLQGTRVVPDARKGLVRIAR 42
BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy Swiss-Prot
Match: ADRM1_DANRE (Proteasomal ubiquitin receptor ADRM1 OS=Danio rerio GN=adrm1b PE=1 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 1.304e-13 Identity = 31/60 (51.67%), Postives = 42/60 (70.00%), Query Frame = 3 Query: 1092 DQIIFPDEAVFEKVNQAS-GRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQP 1268 D IIFPD+ F++VNQ + GRVY+LKF ++ FFWMQEPK + D + C VN ++N P Sbjct: 71 DLIIFPDDCEFKRVNQCTTGRVYVLKFKAGSKRLFFWMQEPKTDKDDEYCRKVNEYLNNP 130 HSP 2 Score: 65.855 bits (159), Expect = 6.841e-10 Identity = 46/132 (34.85%), Postives = 76/132 (57.58%), Query Frame = 3 Query: 1407 SSSGPVKLKDLQRILSSIGPAEVAGEPDGGLGLD--DILKPDLIMPLIETLSLEERLASYLPEGQWTP---EDLLELLQSPPFRQQVDSFTYVLRTGQID--LSQFGIDPSKY-----KFTVLSFLEALEDS 1766 SS+ P++L DLQ IL+++ V P G G+D +L PD++ P++ +++RL YLP G+ P E++ L SP F+Q + F+ L +GQ+ ++QFG+ PS+ K V +F +A+E S Sbjct: 261 SSTQPIQLSDLQSILATM---NVPAMPTEGSGVDLASVLTPDVMAPILANPEVQQRLLPYLPSGESLPQSAEEIQNTLTSPQFQQAMSMFSSALASGQLGPLMNQFGL-PSEAVDAANKGDVEAFAKAMEGS 388
BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy Swiss-Prot
Match: ADRM1_XENTR (Proteasomal ubiquitin receptor ADRM1 OS=Xenopus tropicalis GN=adrm1 PE=2 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 5.521e-13 Identity = 30/60 (50.00%), Postives = 42/60 (70.00%), Query Frame = 3 Query: 1092 DQIIFPDEAVFEKVNQAS-GRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQP 1268 D IIFPD+ F++V+Q + GRVY+LKF ++ FFWMQEPK + D + C VN ++N P Sbjct: 71 DLIIFPDDCEFKRVSQCTTGRVYVLKFKAGSKRLFFWMQEPKTDKDEEYCRKVNEYLNNP 130 HSP 2 Score: 64.6994 bits (156), Expect = 1.423e-9 Identity = 45/144 (31.25%), Postives = 75/144 (52.08%), Query Frame = 3 Query: 1371 TNLGAEAISDVTSSSGPVKLKDLQRILSSIGPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLEL---LQSPPFRQQVDSFTYVLRTGQID--LSQFGIDPSKYKFTVLSFLEALEDSVSKTSGE 1787 +N GA A TS + P++L DLQ IL+++ GE + L +L P+++ P++ ++ERL YLP G+ P+ E+ L SP F+Q + F+ L +GQ+ +SQFG+ +EA ++ TS + Sbjct: 247 SNDGASA---ATSPTQPIQLSDLQNILATMN-VPATGEGGQQVDLASVLTPEIMAPILANAEVQERLMPYLPSGESLPQTADEIQNTLTSPQFQQALSMFSAALASGQLGPLMSQFGLPADAVDAANKGDIEAFAKAMQTTSSQ 386
BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy Swiss-Prot
Match: ADM1B_XENLA (Proteasomal ubiquitin receptor ADRM1-B OS=Xenopus laevis GN=adrm1-b PE=2 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 6.899e-13 Identity = 30/60 (50.00%), Postives = 42/60 (70.00%), Query Frame = 3 Query: 1092 DQIIFPDEAVFEKVNQAS-GRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQP 1268 D IIFPD+ F++V+Q + GRVY+LKF ++ FFWMQEPK + D + C VN ++N P Sbjct: 71 DLIIFPDDCEFKRVSQCTTGRVYVLKFKAGSKRLFFWMQEPKTDKDEEHCRKVNEYLNNP 130 HSP 2 Score: 62.003 bits (149), Expect = 1.124e-8 Identity = 44/144 (30.56%), Postives = 74/144 (51.39%), Query Frame = 3 Query: 1371 TNLGAEAISDVTSSSGPVKLKDLQRILSSIGPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLEL---LQSPPFRQQVDSFTYVLRTGQID--LSQFGIDPSKYKFTVLSFLEALEDSVSKTSGE 1787 +N GA A TS + ++L DLQ IL+++ GE + L +L P+++ P++ ++ERL YLP G+ P+ E+ L SP F+Q + F+ L +GQ+ +SQFG+ +EA ++ TS + Sbjct: 247 SNDGASA---ATSPTQAIQLSDLQNILATMN-VPATGEGGQQVDLASVLTPEIMAPILANAEVQERLMPYLPSGESLPQTADEIQNTLTSPQFQQALSMFSAALASGQLGPLMSQFGLPADAVDAANKGDIEAFAKAMQSTSSQ 386
BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy Swiss-Prot
Match: ADRM1_CHICK (Proteasomal ubiquitin receptor ADRM1 OS=Gallus gallus GN=ADRM1 PE=2 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 1.139e-12 Identity = 38/97 (39.18%), Postives = 54/97 (55.67%), Query Frame = 3 Query: 1092 DQIIFPDEAVFEKVNQAS-GRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPLELGVDEPDASEPLQAFEDMVEDDISSRAGNLTVTNL 1379 D IIFPD+ F++V Q + GRVY+LKF ++ FFWMQEPK + D + C VN ++N P G +AS + E + S GN++ L Sbjct: 72 DLIIFPDDCEFKRVPQCTTGRVYVLKFKAGSKRLFFWMQEPKTDKDEEHCRKVNEYLNNPPMPGALGGNASGGHELSALGGEGGLQSLLGNMSHNQL 168 HSP 2 Score: 68.1662 bits (165), Expect = 1.427e-10 Identity = 45/141 (31.91%), Postives = 81/141 (57.45%), Query Frame = 3 Query: 1419 PVKLKDLQRILSSIG-PAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTP---EDLLELLQSPPFRQQVDSFTYVLRTGQID--LSQFGIDP----SKYKFTVLSFLEALEDSVS--KTSGETQDEKD 1805 P++L DLQ IL+++ P+ G+ + L +L P+++ P++ ++ERL YLP G+ P E++ L SP F+Q + F+ L +GQ +SQFG+ + K V +F +A+++SV + G+++D+KD Sbjct: 261 PIQLSDLQNILATMNVPSGAGGQQ---VDLATVLTPEIMAPILANAEVQERLMPYLPSGESLPQTAEEIQNTLTSPQFQQALSMFSAALASGQHGPLMSQFGLPAEAIDAANKGDVEAFAKAMQNSVKSDQKEGDSKDKKD 398
BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy Swiss-Prot
Match: ADRM1_HUMAN (Proteasomal ubiquitin receptor ADRM1 OS=Homo sapiens GN=ADRM1 PE=1 SV=2) HSP 1 Score: 74.7146 bits (182), Expect = 1.166e-12 Identity = 38/97 (39.18%), Postives = 53/97 (54.64%), Query Frame = 3 Query: 1092 DQIIFPDEAVFEKVNQA-SGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPLELGVDEPDASEPLQAFEDMVEDDISSRAGNLTVTNL 1379 D IIFPD+ F++V Q SGRVY+LKF ++ FFWMQEPK + D + C VN ++N P G S + E + S GN++ + L Sbjct: 72 DLIIFPDDCEFKRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEHCRKVNEYLNNPPMPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQL 168 HSP 2 Score: 68.5514 bits (166), Expect = 9.230e-11 Identity = 47/150 (31.33%), Postives = 83/150 (55.33%), Query Frame = 3 Query: 1395 SDVTSSSGPVKLKDLQRILSSIGPAEVAGEPDGGLGLD--DILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLEL---LQSPPFRQQVDSFTYVLRTGQID--LSQFGIDP----SKYKFTVLSFLEALEDSVS--KTSGETQDEKD 1805 S S + P++L DLQ IL+++ V P GG +D +L P+++ P++ ++ERL YLP G+ P+ E+ L SP F+Q + F+ L +GQ+ + QFG+ + K V +F +A++++ + G+T+D+KD Sbjct: 253 STAASPTQPIQLSDLQSILATM---NVPAGPAGGQQVDLASVLTPEIMAPILANADVQERLLPYLPSGESLPQTADEIQNTLTSPQFQQALGMFSAALASGQLGPLMCQFGLPAEAVEAANKGDVEAFAKAMQNNAKPEQKEGDTKDKKD 399
BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy Swiss-Prot
Match: ADRM1_BOVIN (Proteasomal ubiquitin receptor ADRM1 OS=Bos taurus GN=ADRM1 PE=2 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 1.176e-12 Identity = 31/60 (51.67%), Postives = 41/60 (68.33%), Query Frame = 3 Query: 1092 DQIIFPDEAVFEKVNQA-SGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQP 1268 D IIFPD+ F++V Q SGRVY+LKF ++ FFWMQEPK + D + C VN ++N P Sbjct: 72 DLIIFPDDCEFKRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEHCRKVNEYLNNP 131 HSP 2 Score: 70.0922 bits (170), Expect = 3.476e-11 Identity = 48/154 (31.17%), Postives = 84/154 (54.55%), Query Frame = 3 Query: 1383 AEAISDVTSSSGPVKLKDLQRILSSIGPAEVAGEPDGGLGLD--DILKPDLIMPLIETLSLEERLASYLPEGQWTP---EDLLELLQSPPFRQQVDSFTYVLRTGQID--LSQFGIDP----SKYKFTVLSFLEALEDSVS--KTSGETQDEKD 1805 + S S + P++L DLQ IL+++ V P GG +D +L P+++ P++ ++ERL YLP G+ P E++ L SP F+Q + F+ L +GQ+ + QFG+ + K V +F +A+++S S + G+ +D+KD Sbjct: 249 GDGASTAASPAQPIQLSDLQSILATM---SVPAGPGGGQQVDLASVLTPEIMAPILANADVQERLLPYLPSGESLPQTAEEIQNTLTSPQFQQALGMFSAALASGQLGPLMCQFGLPAEAVEAANKGDVEAFAKAMQNSASPEQQEGDGKDKKD 399
BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy Swiss-Prot
Match: ADM1A_XENLA (Proteasomal ubiquitin receptor ADRM1-A OS=Xenopus laevis GN=adrm1-a PE=2 SV=2) HSP 1 Score: 74.3294 bits (181), Expect = 1.496e-12 Identity = 29/60 (48.33%), Postives = 42/60 (70.00%), Query Frame = 3 Query: 1092 DQIIFPDEAVFEKVNQAS-GRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQP 1268 D IIFPD+ F++V+Q + GRVY+LKF ++ FFWMQEPK + D + C +N ++N P Sbjct: 71 DLIIFPDDCEFKRVSQCTTGRVYVLKFKAGSKRLFFWMQEPKTDKDEEYCRKLNEYLNNP 130 HSP 2 Score: 66.2402 bits (160), Expect = 5.013e-10 Identity = 42/139 (30.22%), Postives = 73/139 (52.52%), Query Frame = 3 Query: 1386 EAISDVTSSSGPVKLKDLQRILSSIGPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLEL---LQSPPFRQQVDSFTYVLRTGQID--LSQFGIDPSKYKFTVLSFLEALEDSVSKTSGE 1787 + S+ TS + P++L DLQ IL+++ GE + L +L P+++ P++ ++ERL YLP G+ P+ E+ L SP F+Q + F+ L +GQ+ +SQFG+ +EA ++ TS + Sbjct: 249 DGASEATSPTQPIQLSDLQNILATMN-VPATGEGGQQVDLASVLTPEIMAPILANAEVQERLTPYLPSGESLPQTADEIQNTLTSPQFQQALGMFSAALASGQLGPLMSQFGLPADAVDAANKGDIEAFAKAMQSTSSQ 386
BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy Swiss-Prot
Match: ADRM1_RAT (Proteasomal ubiquitin receptor ADRM1 OS=Rattus norvegicus GN=Adrm1 PE=2 SV=2) HSP 1 Score: 73.1738 bits (178), Expect = 3.011e-12 Identity = 38/97 (39.18%), Postives = 52/97 (53.61%), Query Frame = 3 Query: 1092 DQIIFPDEAVFEKVNQA-SGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPLELGVDEPDASEPLQAFEDMVEDDISSRAGNLTVTNL 1379 D IIFPD+ F++V Q SGRVY+LKF ++ FFWMQEPK + D + C VN +N P G S + E + S GN++ + L Sbjct: 72 DLIIFPDDCEFKRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEHCRKVNECLNNPPMPGTLGASGSSGHELSALGGEGGLQSLLGNMSHSQL 168 HSP 2 Score: 66.2402 bits (160), Expect = 4.522e-10 Identity = 46/154 (29.87%), Postives = 81/154 (52.60%), Query Frame = 3 Query: 1383 AEAISDVTSSSGPVKLKDLQRILSSIGPAEVAGEPDGGLGLD--DILKPDLIMPLIETLSLEERLASYLPEGQWTP---EDLLELLQSPPFRQQVDSFTYVLRTGQID--LSQFGIDP----SKYKFTVLSFLEALEDSVSK--TSGETQDEKD 1805 S S + P++L DLQ IL+++ V P G +D +L P+++ P++ ++ERL YLP G+ P E++ L SP F+Q + F+ L +GQ+ + QFG+ + K V +F +A++++ G+T+D+KD Sbjct: 249 GNGTSTAASPTQPIQLSDLQSILATM---NVPAGPGGSQQVDLASVLTPEIMAPILANADVQERLLPYLPSGESLPQTAEEIQNTLTSPQFQQALGMFSAALASGQLGPLMCQFGLPAEAVEAANKGDVEAFAKAMQNNAKSDPKEGDTKDKKD 399
BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy Swiss-Prot
Match: ADRM1_MOUSE (Proteasomal ubiquitin receptor ADRM1 OS=Mus musculus GN=Adrm1 PE=1 SV=2) HSP 1 Score: 72.4034 bits (176), Expect = 5.032e-12 Identity = 31/60 (51.67%), Postives = 40/60 (66.67%), Query Frame = 3 Query: 1092 DQIIFPDEAVFEKVNQA-SGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQP 1268 D IIFPD+ F++V Q SGRVY+LKF ++ FFWMQEPK + D + C VN +N P Sbjct: 72 DLIIFPDDCEFKRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEHCRKVNECLNNP 131 HSP 2 Score: 65.4698 bits (158), Expect = 1.031e-9 Identity = 46/154 (29.87%), Postives = 81/154 (52.60%), Query Frame = 3 Query: 1383 AEAISDVTSSSGPVKLKDLQRILSSIGPAEVAGEPDGGLGLD--DILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLEL---LQSPPFRQQVDSFTYVLRTGQID--LSQFGIDP----SKYKFTVLSFLEALEDSVSK--TSGETQDEKD 1805 S S + P++L DLQ IL+++ V P G +D +L P+++ P++ ++ERL YLP G+ P+ E+ L SP F+Q + F+ L +GQ+ + QFG+ + K V +F +A++++ G+T+D+KD Sbjct: 249 GNGTSTAASPTQPIQLSDLQSILATM---NVPAGPGGSQQVDLASVLTPEIMAPILANADVQERLLPYLPSGESLPQTADEIQNTLTSPQFQQALGMFSAALASGQLGPLMCQFGLPAEAVEAANKGDVEAFAKAMQNNAKSDPKEGDTKDKKD 399
BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy TrEMBL
Match: A0A067F3S0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g020703mg PE=4 SV=1) HSP 1 Score: 395.586 bits (1015), Expect = 6.926e-127 Identity = 204/258 (79.07%), Postives = 221/258 (85.66%), Query Frame = 3 Query: 1092 DQIIFPDEAVFEKVNQASGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPLE-LGVDEPDASEPLQAFEDMVEDDISSRAGNLTVTNLGAEAISDVTSSSGPVKLKDLQRILSSIGPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSKTS---GETQDEKDVRPQSCNRNDPMDESK 1853 DQI+FP EAVFEKVNQASGRVYILKFNTDDRKFF WMQEPKAE+DSQLC +VN FIN+PL + +E DAS PLQ EDMVEDD+SSRAGNL V NLG EAISDVTSSSGPVKL+DLQRI S+IGPA GLGL DILKPDLIMPLIETL LE+RLA YLPEGQWTPE+LLELLQSPPFRQQVDSFTYVL+TGQIDLSQFG+DPSKYKFTVLSFLEALEDSVSK S QD+K++ QSCNR+D MDESK Sbjct: 65 DQIVFPHEAVFEKVNQASGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRPLVFVNEEELDASVPLQVSEDMVEDDVSSRAGNLVVPNLGGEAISDVTSSSGPVKLEDLQRIFSNIGPA--------GLGLGDILKPDLIMPLIETLPLEQRLAPYLPEGQWTPEELLELLQSPPFRQQVDSFTYVLKTGQIDLSQFGVDPSKYKFTVLSFLEALEDSVSKLSESEESRQDDKNLMSQSCNRSDSMDESK 314 HSP 2 Score: 69.707 bits (169), Expect = 1.686e-9 Identity = 33/44 (75.00%), Postives = 37/44 (84.09%), Query Frame = 1 Query: 127 MGSSFGEAFPAMQETLLEFRAGKMMLEGKRVVPDTRKGLIRIAR 258 MGSS A PAMQE LLEFRAGKM +GK+VVPD+RKGL+RIAR Sbjct: 1 MGSSSTAASPAMQEILLEFRAGKMTFDGKKVVPDSRKGLVRIAR 44
BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy TrEMBL
Match: V4WI59_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10008923mg PE=4 SV=1) HSP 1 Score: 395.586 bits (1015), Expect = 6.926e-127 Identity = 204/258 (79.07%), Postives = 221/258 (85.66%), Query Frame = 3 Query: 1092 DQIIFPDEAVFEKVNQASGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPLE-LGVDEPDASEPLQAFEDMVEDDISSRAGNLTVTNLGAEAISDVTSSSGPVKLKDLQRILSSIGPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSKTS---GETQDEKDVRPQSCNRNDPMDESK 1853 DQI+FP EAVFEKVNQASGRVYILKFNTDDRKFF WMQEPKAE+DSQLC +VN FIN+PL + +E DAS PLQ EDMVEDD+SSRAGNL V NLG EAISDVTSSSGPVKL+DLQRI S+IGPA GLGL DILKPDLIMPLIETL LE+RLA YLPEGQWTPE+LLELLQSPPFRQQVDSFTYVL+TGQIDLSQFG+DPSKYKFTVLSFLEALEDSVSK S QD+K++ QSCNR+D MDESK Sbjct: 65 DQIVFPHEAVFEKVNQASGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRPLVFVNEEELDASVPLQVSEDMVEDDVSSRAGNLVVPNLGGEAISDVTSSSGPVKLEDLQRIFSNIGPA--------GLGLGDILKPDLIMPLIETLPLEQRLAPYLPEGQWTPEELLELLQSPPFRQQVDSFTYVLKTGQIDLSQFGVDPSKYKFTVLSFLEALEDSVSKLSESEESRQDDKNLMSQSCNRSDSMDESK 314 HSP 2 Score: 69.707 bits (169), Expect = 1.686e-9 Identity = 33/44 (75.00%), Postives = 37/44 (84.09%), Query Frame = 1 Query: 127 MGSSFGEAFPAMQETLLEFRAGKMMLEGKRVVPDTRKGLIRIAR 258 MGSS A PAMQE LLEFRAGKM +GK+VVPD+RKGL+RIAR Sbjct: 1 MGSSSTAASPAMQEILLEFRAGKMTFDGKKVVPDSRKGLVRIAR 44
BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy TrEMBL
Match: A0A097PT32_VITVI (Regulatory particle non-ATPase 13 (Fragment) OS=Vitis vinifera PE=2 SV=1) HSP 1 Score: 394.045 bits (1011), Expect = 2.411e-126 Identity = 203/254 (79.92%), Postives = 221/254 (87.01%), Query Frame = 3 Query: 1092 DQIIFPDEAVFEKVNQASGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPLE-LGVDEPDASEPLQAFEDMVEDDISSRAGNLTVTNLGAEAISDVTSSSGPVKLKDLQRILSSIGPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSKTSGETQDEKDVRPQSCNRNDPMDES 1850 DQI+FPDEAVFEKVNQASGR+YILKFNTD+RKFFFWMQEPKAE DSQLC +VN IN+PLE LG +E D S P+Q EDMVEDDISSRAGNL +LGAE SDVTS SGPVKL DLQRILS+I PA+ AG+PD GLGL DILKPDLI+PLIETL +E+RLASYLPEGQW PEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALED+V K S QD+KD R Q CN N+PMDE+ Sbjct: 60 DQIVFPDEAVFEKVNQASGRIYILKFNTDNRKFFFWMQEPKAEGDSQLCNSVNYHINRPLEFLGEEEQDVSGPVQISEDMVEDDISSRAGNLVGPSLGAEVTSDVTSLSGPVKLADLQRILSNIEPADGAGDPDEGLGLADILKPDLILPLIETLPMEQRLASYLPEGQWNPEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDTVCKAS---QDDKDSRSQ-CNDNEPMDEA 309
BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy TrEMBL
Match: I1K657_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 393.66 bits (1010), Expect = 6.134e-126 Identity = 198/258 (76.74%), Postives = 225/258 (87.21%), Query Frame = 3 Query: 1092 DQIIFPDEAVFEKVNQASGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPLEL-GVDEPDASEPLQAFEDMVEDDISSRAGNLTVTNLGAEAISDVTSSSGPVKLKDLQRILSSIGPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSK---TSGETQDEKDVRPQSCNRNDPMDESK 1853 DQIIFP+EA+FEKVNQ SGRVYILKFN+DDRKFFFWMQE A+ DSQLC +VN++IN+PLEL G +EPD S PLQ EDM EDDISSRA NL + NLG EA SDVTSS GPVKL+DLQRILS+IGPA+ +PDGGLGL DILKPDLIMPL++ L LE+RLA YLPEG+W+PE++LELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSK + QD++D+R QSCNR+DPMDES+ Sbjct: 65 DQIIFPNEAIFEKVNQTSGRVYILKFNSDDRKFFFWMQESNADGDSQLCSSVNDYINRPLELLGEEEPDGSLPLQISEDMTEDDISSRAANLGIPNLGVEATSDVTSS-GPVKLEDLQRILSNIGPADSIVDPDGGLGLGDILKPDLIMPLMDMLPLEQRLAPYLPEGKWSPEEILELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSKSVESEEARQDDQDLRSQSCNRHDPMDESQ 321 HSP 2 Score: 71.633 bits (174), Expect = 4.715e-10 Identity = 33/44 (75.00%), Postives = 37/44 (84.09%), Query Frame = 1 Query: 127 MGSSFGEAFPAMQETLLEFRAGKMMLEGKRVVPDTRKGLIRIAR 258 M SS + FPA+QE +LEFRAGKM LE KRVVPDTRKGL+RIAR Sbjct: 1 MSSSSADVFPAIQEVMLEFRAGKMFLEEKRVVPDTRKGLVRIAR 44
BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy TrEMBL
Match: A0A0B2NXB0_GLYSO (Proteasomal ubiquitin receptor ADRM1 OS=Glycine soja GN=glysoja_017560 PE=4 SV=1) HSP 1 Score: 393.66 bits (1010), Expect = 6.134e-126 Identity = 198/258 (76.74%), Postives = 225/258 (87.21%), Query Frame = 3 Query: 1092 DQIIFPDEAVFEKVNQASGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPLEL-GVDEPDASEPLQAFEDMVEDDISSRAGNLTVTNLGAEAISDVTSSSGPVKLKDLQRILSSIGPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSK---TSGETQDEKDVRPQSCNRNDPMDESK 1853 DQIIFP+EA+FEKVNQ SGRVYILKFN+DDRKFFFWMQE A+ DSQLC +VN++IN+PLEL G +EPD S PLQ EDM EDDISSRA NL + NLG EA SDVTSS GPVKL+DLQRILS+IGPA+ +PDGGLGL DILKPDLIMPL++ L LE+RLA YLPEG+W+PE++LELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSK + QD++D+R QSCNR+DPMDES+ Sbjct: 65 DQIIFPNEAIFEKVNQTSGRVYILKFNSDDRKFFFWMQESNADGDSQLCSSVNDYINRPLELLGEEEPDGSLPLQISEDMTEDDISSRAANLGIPNLGVEATSDVTSS-GPVKLEDLQRILSNIGPADSIVDPDGGLGLGDILKPDLIMPLMDMLPLEQRLAPYLPEGKWSPEEILELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSKSVESEEARQDDQDLRSQSCNRHDPMDESQ 321 HSP 2 Score: 71.633 bits (174), Expect = 4.715e-10 Identity = 33/44 (75.00%), Postives = 37/44 (84.09%), Query Frame = 1 Query: 127 MGSSFGEAFPAMQETLLEFRAGKMMLEGKRVVPDTRKGLIRIAR 258 M SS + FPA+QE +LEFRAGKM LE KRVVPDTRKGL+RIAR Sbjct: 1 MSSSSADVFPAIQEVMLEFRAGKMFLEEKRVVPDTRKGLVRIAR 44 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 13
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BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0097348 ID=g.barbadense_cottongen_reftransV1_0097348; Name=g.barbadense_cottongen_reftransV1_0097348; organism=Gossypium barbadense; type=contig; length=2544bpback to top |