g.barbadense_cottongen_reftransV1_0097348, g.barbadense_cottongen_reftransV1_0097348 (contig) Gossypium barbadense

Overview


Name	g.barbadense_cottongen_reftransV1_0097348
Unique Name	g.barbadense_cottongen_reftransV1_0097348
Type	contig
Organism	Gossypium barbadense (Sea Island cotton)
Sequence length	2544

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Dt08	chromosome	g.barbadense_cottongen_reftransV1_0097348:1..2544 . Dt08:2323563..2328731 -		n/a

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium barbadense CottonGen RefTrans V1	2016-11-01
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot	2016-11-01
InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1	2016-11-02
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL	2016-11-02

Homology

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BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy Swiss-Prot
Match: RPN13_ARATH (26S proteasome regulatory subunit RPN13 OS=Arabidopsis thaliana GN=RPN13 PE=1 SV=2)

HSP 1 Score: 328.946 bits (842), Expect = 1.781e-103
Identity = 165/238 (69.33%), Postives = 196/238 (82.35%), Query Frame = 3

Query: 1092 DQIIFPDEAVFEKVNQASGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPLELGVDEPDASEPLQAFEDMVEDDISSRAGNLTVTNLGAEAISDVTSSSGPVKLKDLQRILSSI--GPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSKTSGETQDE 1799
            DQI+FPDEA+FEKVNQ+S RVYILKFN+DDRK FFWMQEP+AE D++LC +VN ++NQPLE   +E  A+   +  EDM ED+ SSRAGNL V NL +E +SDVTSSSGPVKL DLQRIL+++  GP  +AG+ D GL L DILKP+LIMPL+E L ++ERL+S+LPEG    ED+LELLQSPPFRQQVD+FTYVLRTGQIDL+QFGIDPSKYKFTV SFLEALEDSVS  S +  DE
Sbjct:   63 DQIVFPDEALFEKVNQSSDRVYILKFNSDDRKLFFWMQEPRAEGDAELCSSVNQYLNQPLEFPGEEGLAAAITEELEDMAEDNTSSRAGNLVVPNLSSE-VSDVTSSSGPVKLADLQRILNNLSGGPVGIAGDQDEGLALGDILKPELIMPLLEALPVQERLSSHLPEGHSRAEDILELLQSPPFRQQVDAFTYVLRTGQIDLTQFGIDPSKYKFTVDSFLEALEDSVSTQSRDAMDE 299

HSP 2 Score: 67.3958 bits (163), Expect = 1.100e-10
Identity = 31/41 (75.61%), Postives = 34/41 (82.93%), Query Frame = 1

Query:  136 SFGEAFPAMQETLLEFRAGKMMLEGKRVVPDTRKGLIRIAR 258
            S  EAFP MQE +LEFRAGKM L+G RVVPD RKGL+RIAR
Sbjct:    2 SSSEAFPVMQEIMLEFRAGKMSLQGTRVVPDARKGLVRIAR 42

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy Swiss-Prot
Match: ADRM1_DANRE (Proteasomal ubiquitin receptor ADRM1 OS=Danio rerio GN=adrm1b PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.304e-13
Identity = 31/60 (51.67%), Postives = 42/60 (70.00%), Query Frame = 3

Query: 1092 DQIIFPDEAVFEKVNQAS-GRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQP 1268
            D IIFPD+  F++VNQ + GRVY+LKF    ++ FFWMQEPK + D + C  VN ++N P
Sbjct:   71 DLIIFPDDCEFKRVNQCTTGRVYVLKFKAGSKRLFFWMQEPKTDKDDEYCRKVNEYLNNP 130

HSP 2 Score: 65.855 bits (159), Expect = 6.841e-10
Identity = 46/132 (34.85%), Postives = 76/132 (57.58%), Query Frame = 3

Query: 1407 SSSGPVKLKDLQRILSSIGPAEVAGEPDGGLGLD--DILKPDLIMPLIETLSLEERLASYLPEGQWTP---EDLLELLQSPPFRQQVDSFTYVLRTGQID--LSQFGIDPSKY-----KFTVLSFLEALEDS 1766
            SS+ P++L DLQ IL+++    V   P  G G+D   +L PD++ P++    +++RL  YLP G+  P   E++   L SP F+Q +  F+  L +GQ+   ++QFG+ PS+      K  V +F +A+E S
Sbjct:  261 SSTQPIQLSDLQSILATM---NVPAMPTEGSGVDLASVLTPDVMAPILANPEVQQRLLPYLPSGESLPQSAEEIQNTLTSPQFQQAMSMFSSALASGQLGPLMNQFGL-PSEAVDAANKGDVEAFAKAMEGS 388

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy Swiss-Prot
Match: ADRM1_XENTR (Proteasomal ubiquitin receptor ADRM1 OS=Xenopus tropicalis GN=adrm1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 5.521e-13
Identity = 30/60 (50.00%), Postives = 42/60 (70.00%), Query Frame = 3

Query: 1092 DQIIFPDEAVFEKVNQAS-GRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQP 1268
            D IIFPD+  F++V+Q + GRVY+LKF    ++ FFWMQEPK + D + C  VN ++N P
Sbjct:   71 DLIIFPDDCEFKRVSQCTTGRVYVLKFKAGSKRLFFWMQEPKTDKDEEYCRKVNEYLNNP 130

HSP 2 Score: 64.6994 bits (156), Expect = 1.423e-9
Identity = 45/144 (31.25%), Postives = 75/144 (52.08%), Query Frame = 3

Query: 1371 TNLGAEAISDVTSSSGPVKLKDLQRILSSIGPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLEL---LQSPPFRQQVDSFTYVLRTGQID--LSQFGIDPSKYKFTVLSFLEALEDSVSKTSGE 1787
            +N GA A    TS + P++L DLQ IL+++      GE    + L  +L P+++ P++    ++ERL  YLP G+  P+   E+   L SP F+Q +  F+  L +GQ+   +SQFG+            +EA   ++  TS +
Sbjct:  247 SNDGASA---ATSPTQPIQLSDLQNILATMN-VPATGEGGQQVDLASVLTPEIMAPILANAEVQERLMPYLPSGESLPQTADEIQNTLTSPQFQQALSMFSAALASGQLGPLMSQFGLPADAVDAANKGDIEAFAKAMQTTSSQ 386

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy Swiss-Prot
Match: ADM1B_XENLA (Proteasomal ubiquitin receptor ADRM1-B OS=Xenopus laevis GN=adrm1-b PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.899e-13
Identity = 30/60 (50.00%), Postives = 42/60 (70.00%), Query Frame = 3

Query: 1092 DQIIFPDEAVFEKVNQAS-GRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQP 1268
            D IIFPD+  F++V+Q + GRVY+LKF    ++ FFWMQEPK + D + C  VN ++N P
Sbjct:   71 DLIIFPDDCEFKRVSQCTTGRVYVLKFKAGSKRLFFWMQEPKTDKDEEHCRKVNEYLNNP 130

HSP 2 Score: 62.003 bits (149), Expect = 1.124e-8
Identity = 44/144 (30.56%), Postives = 74/144 (51.39%), Query Frame = 3

Query: 1371 TNLGAEAISDVTSSSGPVKLKDLQRILSSIGPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLEL---LQSPPFRQQVDSFTYVLRTGQID--LSQFGIDPSKYKFTVLSFLEALEDSVSKTSGE 1787
            +N GA A    TS +  ++L DLQ IL+++      GE    + L  +L P+++ P++    ++ERL  YLP G+  P+   E+   L SP F+Q +  F+  L +GQ+   +SQFG+            +EA   ++  TS +
Sbjct:  247 SNDGASA---ATSPTQAIQLSDLQNILATMN-VPATGEGGQQVDLASVLTPEIMAPILANAEVQERLMPYLPSGESLPQTADEIQNTLTSPQFQQALSMFSAALASGQLGPLMSQFGLPADAVDAANKGDIEAFAKAMQSTSSQ 386

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy Swiss-Prot
Match: ADRM1_CHICK (Proteasomal ubiquitin receptor ADRM1 OS=Gallus gallus GN=ADRM1 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.139e-12
Identity = 38/97 (39.18%), Postives = 54/97 (55.67%), Query Frame = 3

Query: 1092 DQIIFPDEAVFEKVNQAS-GRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPLELGVDEPDASEPLQAFEDMVEDDISSRAGNLTVTNL 1379
            D IIFPD+  F++V Q + GRVY+LKF    ++ FFWMQEPK + D + C  VN ++N P   G    +AS   +      E  + S  GN++   L
Sbjct:   72 DLIIFPDDCEFKRVPQCTTGRVYVLKFKAGSKRLFFWMQEPKTDKDEEHCRKVNEYLNNPPMPGALGGNASGGHELSALGGEGGLQSLLGNMSHNQL 168

HSP 2 Score: 68.1662 bits (165), Expect = 1.427e-10
Identity = 45/141 (31.91%), Postives = 81/141 (57.45%), Query Frame = 3

Query: 1419 PVKLKDLQRILSSIG-PAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTP---EDLLELLQSPPFRQQVDSFTYVLRTGQID--LSQFGIDP----SKYKFTVLSFLEALEDSVS--KTSGETQDEKD 1805
            P++L DLQ IL+++  P+   G+    + L  +L P+++ P++    ++ERL  YLP G+  P   E++   L SP F+Q +  F+  L +GQ    +SQFG+      +  K  V +F +A+++SV   +  G+++D+KD
Sbjct:  261 PIQLSDLQNILATMNVPSGAGGQQ---VDLATVLTPEIMAPILANAEVQERLMPYLPSGESLPQTAEEIQNTLTSPQFQQALSMFSAALASGQHGPLMSQFGLPAEAIDAANKGDVEAFAKAMQNSVKSDQKEGDSKDKKD 398

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy Swiss-Prot
Match: ADRM1_HUMAN (Proteasomal ubiquitin receptor ADRM1 OS=Homo sapiens GN=ADRM1 PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 1.166e-12
Identity = 38/97 (39.18%), Postives = 53/97 (54.64%), Query Frame = 3

Query: 1092 DQIIFPDEAVFEKVNQA-SGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPLELGVDEPDASEPLQAFEDMVEDDISSRAGNLTVTNL 1379
            D IIFPD+  F++V Q  SGRVY+LKF    ++ FFWMQEPK + D + C  VN ++N P   G      S   +      E  + S  GN++ + L
Sbjct:   72 DLIIFPDDCEFKRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEHCRKVNEYLNNPPMPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQL 168

HSP 2 Score: 68.5514 bits (166), Expect = 9.230e-11
Identity = 47/150 (31.33%), Postives = 83/150 (55.33%), Query Frame = 3

Query: 1395 SDVTSSSGPVKLKDLQRILSSIGPAEVAGEPDGGLGLD--DILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLEL---LQSPPFRQQVDSFTYVLRTGQID--LSQFGIDP----SKYKFTVLSFLEALEDSVS--KTSGETQDEKD 1805
            S   S + P++L DLQ IL+++    V   P GG  +D   +L P+++ P++    ++ERL  YLP G+  P+   E+   L SP F+Q +  F+  L +GQ+   + QFG+      +  K  V +F +A++++    +  G+T+D+KD
Sbjct:  253 STAASPTQPIQLSDLQSILATM---NVPAGPAGGQQVDLASVLTPEIMAPILANADVQERLLPYLPSGESLPQTADEIQNTLTSPQFQQALGMFSAALASGQLGPLMCQFGLPAEAVEAANKGDVEAFAKAMQNNAKPEQKEGDTKDKKD 399

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy Swiss-Prot
Match: ADRM1_BOVIN (Proteasomal ubiquitin receptor ADRM1 OS=Bos taurus GN=ADRM1 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.176e-12
Identity = 31/60 (51.67%), Postives = 41/60 (68.33%), Query Frame = 3

Query: 1092 DQIIFPDEAVFEKVNQA-SGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQP 1268
            D IIFPD+  F++V Q  SGRVY+LKF    ++ FFWMQEPK + D + C  VN ++N P
Sbjct:   72 DLIIFPDDCEFKRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEHCRKVNEYLNNP 131

HSP 2 Score: 70.0922 bits (170), Expect = 3.476e-11
Identity = 48/154 (31.17%), Postives = 84/154 (54.55%), Query Frame = 3

Query: 1383 AEAISDVTSSSGPVKLKDLQRILSSIGPAEVAGEPDGGLGLD--DILKPDLIMPLIETLSLEERLASYLPEGQWTP---EDLLELLQSPPFRQQVDSFTYVLRTGQID--LSQFGIDP----SKYKFTVLSFLEALEDSVS--KTSGETQDEKD 1805
             +  S   S + P++L DLQ IL+++    V   P GG  +D   +L P+++ P++    ++ERL  YLP G+  P   E++   L SP F+Q +  F+  L +GQ+   + QFG+      +  K  V +F +A+++S S  +  G+ +D+KD
Sbjct:  249 GDGASTAASPAQPIQLSDLQSILATM---SVPAGPGGGQQVDLASVLTPEIMAPILANADVQERLLPYLPSGESLPQTAEEIQNTLTSPQFQQALGMFSAALASGQLGPLMCQFGLPAEAVEAANKGDVEAFAKAMQNSASPEQQEGDGKDKKD 399

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy Swiss-Prot
Match: ADM1A_XENLA (Proteasomal ubiquitin receptor ADRM1-A OS=Xenopus laevis GN=adrm1-a PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 1.496e-12
Identity = 29/60 (48.33%), Postives = 42/60 (70.00%), Query Frame = 3

Query: 1092 DQIIFPDEAVFEKVNQAS-GRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQP 1268
            D IIFPD+  F++V+Q + GRVY+LKF    ++ FFWMQEPK + D + C  +N ++N P
Sbjct:   71 DLIIFPDDCEFKRVSQCTTGRVYVLKFKAGSKRLFFWMQEPKTDKDEEYCRKLNEYLNNP 130

HSP 2 Score: 66.2402 bits (160), Expect = 5.013e-10
Identity = 42/139 (30.22%), Postives = 73/139 (52.52%), Query Frame = 3

Query: 1386 EAISDVTSSSGPVKLKDLQRILSSIGPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLEL---LQSPPFRQQVDSFTYVLRTGQID--LSQFGIDPSKYKFTVLSFLEALEDSVSKTSGE 1787
            +  S+ TS + P++L DLQ IL+++      GE    + L  +L P+++ P++    ++ERL  YLP G+  P+   E+   L SP F+Q +  F+  L +GQ+   +SQFG+            +EA   ++  TS +
Sbjct:  249 DGASEATSPTQPIQLSDLQNILATMN-VPATGEGGQQVDLASVLTPEIMAPILANAEVQERLTPYLPSGESLPQTADEIQNTLTSPQFQQALGMFSAALASGQLGPLMSQFGLPADAVDAANKGDIEAFAKAMQSTSSQ 386

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy Swiss-Prot
Match: ADRM1_RAT (Proteasomal ubiquitin receptor ADRM1 OS=Rattus norvegicus GN=Adrm1 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 3.011e-12
Identity = 38/97 (39.18%), Postives = 52/97 (53.61%), Query Frame = 3

Query: 1092 DQIIFPDEAVFEKVNQA-SGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPLELGVDEPDASEPLQAFEDMVEDDISSRAGNLTVTNL 1379
            D IIFPD+  F++V Q  SGRVY+LKF    ++ FFWMQEPK + D + C  VN  +N P   G      S   +      E  + S  GN++ + L
Sbjct:   72 DLIIFPDDCEFKRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEHCRKVNECLNNPPMPGTLGASGSSGHELSALGGEGGLQSLLGNMSHSQL 168

HSP 2 Score: 66.2402 bits (160), Expect = 4.522e-10
Identity = 46/154 (29.87%), Postives = 81/154 (52.60%), Query Frame = 3

Query: 1383 AEAISDVTSSSGPVKLKDLQRILSSIGPAEVAGEPDGGLGLD--DILKPDLIMPLIETLSLEERLASYLPEGQWTP---EDLLELLQSPPFRQQVDSFTYVLRTGQID--LSQFGIDP----SKYKFTVLSFLEALEDSVSK--TSGETQDEKD 1805
                S   S + P++L DLQ IL+++    V   P G   +D   +L P+++ P++    ++ERL  YLP G+  P   E++   L SP F+Q +  F+  L +GQ+   + QFG+      +  K  V +F +A++++       G+T+D+KD
Sbjct:  249 GNGTSTAASPTQPIQLSDLQSILATM---NVPAGPGGSQQVDLASVLTPEIMAPILANADVQERLLPYLPSGESLPQTAEEIQNTLTSPQFQQALGMFSAALASGQLGPLMCQFGLPAEAVEAANKGDVEAFAKAMQNNAKSDPKEGDTKDKKD 399

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy Swiss-Prot
Match: ADRM1_MOUSE (Proteasomal ubiquitin receptor ADRM1 OS=Mus musculus GN=Adrm1 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 5.032e-12
Identity = 31/60 (51.67%), Postives = 40/60 (66.67%), Query Frame = 3

Query: 1092 DQIIFPDEAVFEKVNQA-SGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQP 1268
            D IIFPD+  F++V Q  SGRVY+LKF    ++ FFWMQEPK + D + C  VN  +N P
Sbjct:   72 DLIIFPDDCEFKRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEHCRKVNECLNNP 131

HSP 2 Score: 65.4698 bits (158), Expect = 1.031e-9
Identity = 46/154 (29.87%), Postives = 81/154 (52.60%), Query Frame = 3

Query: 1383 AEAISDVTSSSGPVKLKDLQRILSSIGPAEVAGEPDGGLGLD--DILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLEL---LQSPPFRQQVDSFTYVLRTGQID--LSQFGIDP----SKYKFTVLSFLEALEDSVSK--TSGETQDEKD 1805
                S   S + P++L DLQ IL+++    V   P G   +D   +L P+++ P++    ++ERL  YLP G+  P+   E+   L SP F+Q +  F+  L +GQ+   + QFG+      +  K  V +F +A++++       G+T+D+KD
Sbjct:  249 GNGTSTAASPTQPIQLSDLQSILATM---NVPAGPGGSQQVDLASVLTPEIMAPILANADVQERLLPYLPSGESLPQTADEIQNTLTSPQFQQALGMFSAALASGQLGPLMCQFGLPAEAVEAANKGDVEAFAKAMQNNAKSDPKEGDTKDKKD 399

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy TrEMBL
Match: A0A067F3S0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g020703mg PE=4 SV=1)

HSP 1 Score: 395.586 bits (1015), Expect = 6.926e-127
Identity = 204/258 (79.07%), Postives = 221/258 (85.66%), Query Frame = 3

Query: 1092 DQIIFPDEAVFEKVNQASGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPLE-LGVDEPDASEPLQAFEDMVEDDISSRAGNLTVTNLGAEAISDVTSSSGPVKLKDLQRILSSIGPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSKTS---GETQDEKDVRPQSCNRNDPMDESK 1853
            DQI+FP EAVFEKVNQASGRVYILKFNTDDRKFF WMQEPKAE+DSQLC +VN FIN+PL  +  +E DAS PLQ  EDMVEDD+SSRAGNL V NLG EAISDVTSSSGPVKL+DLQRI S+IGPA        GLGL DILKPDLIMPLIETL LE+RLA YLPEGQWTPE+LLELLQSPPFRQQVDSFTYVL+TGQIDLSQFG+DPSKYKFTVLSFLEALEDSVSK S      QD+K++  QSCNR+D MDESK
Sbjct:   65 DQIVFPHEAVFEKVNQASGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRPLVFVNEEELDASVPLQVSEDMVEDDVSSRAGNLVVPNLGGEAISDVTSSSGPVKLEDLQRIFSNIGPA--------GLGLGDILKPDLIMPLIETLPLEQRLAPYLPEGQWTPEELLELLQSPPFRQQVDSFTYVLKTGQIDLSQFGVDPSKYKFTVLSFLEALEDSVSKLSESEESRQDDKNLMSQSCNRSDSMDESK 314

HSP 2 Score: 69.707 bits (169), Expect = 1.686e-9
Identity = 33/44 (75.00%), Postives = 37/44 (84.09%), Query Frame = 1

Query:  127 MGSSFGEAFPAMQETLLEFRAGKMMLEGKRVVPDTRKGLIRIAR 258
            MGSS   A PAMQE LLEFRAGKM  +GK+VVPD+RKGL+RIAR
Sbjct:    1 MGSSSTAASPAMQEILLEFRAGKMTFDGKKVVPDSRKGLVRIAR 44

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy TrEMBL
Match: V4WI59_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10008923mg PE=4 SV=1)

HSP 1 Score: 395.586 bits (1015), Expect = 6.926e-127
Identity = 204/258 (79.07%), Postives = 221/258 (85.66%), Query Frame = 3

Query: 1092 DQIIFPDEAVFEKVNQASGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPLE-LGVDEPDASEPLQAFEDMVEDDISSRAGNLTVTNLGAEAISDVTSSSGPVKLKDLQRILSSIGPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSKTS---GETQDEKDVRPQSCNRNDPMDESK 1853
            DQI+FP EAVFEKVNQASGRVYILKFNTDDRKFF WMQEPKAE+DSQLC +VN FIN+PL  +  +E DAS PLQ  EDMVEDD+SSRAGNL V NLG EAISDVTSSSGPVKL+DLQRI S+IGPA        GLGL DILKPDLIMPLIETL LE+RLA YLPEGQWTPE+LLELLQSPPFRQQVDSFTYVL+TGQIDLSQFG+DPSKYKFTVLSFLEALEDSVSK S      QD+K++  QSCNR+D MDESK
Sbjct:   65 DQIVFPHEAVFEKVNQASGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRPLVFVNEEELDASVPLQVSEDMVEDDVSSRAGNLVVPNLGGEAISDVTSSSGPVKLEDLQRIFSNIGPA--------GLGLGDILKPDLIMPLIETLPLEQRLAPYLPEGQWTPEELLELLQSPPFRQQVDSFTYVLKTGQIDLSQFGVDPSKYKFTVLSFLEALEDSVSKLSESEESRQDDKNLMSQSCNRSDSMDESK 314

HSP 2 Score: 69.707 bits (169), Expect = 1.686e-9
Identity = 33/44 (75.00%), Postives = 37/44 (84.09%), Query Frame = 1

Query:  127 MGSSFGEAFPAMQETLLEFRAGKMMLEGKRVVPDTRKGLIRIAR 258
            MGSS   A PAMQE LLEFRAGKM  +GK+VVPD+RKGL+RIAR
Sbjct:    1 MGSSSTAASPAMQEILLEFRAGKMTFDGKKVVPDSRKGLVRIAR 44

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy TrEMBL
Match: A0A097PT32_VITVI (Regulatory particle non-ATPase 13 (Fragment) OS=Vitis vinifera PE=2 SV=1)

HSP 1 Score: 394.045 bits (1011), Expect = 2.411e-126
Identity = 203/254 (79.92%), Postives = 221/254 (87.01%), Query Frame = 3

Query: 1092 DQIIFPDEAVFEKVNQASGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPLE-LGVDEPDASEPLQAFEDMVEDDISSRAGNLTVTNLGAEAISDVTSSSGPVKLKDLQRILSSIGPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSKTSGETQDEKDVRPQSCNRNDPMDES 1850
            DQI+FPDEAVFEKVNQASGR+YILKFNTD+RKFFFWMQEPKAE DSQLC +VN  IN+PLE LG +E D S P+Q  EDMVEDDISSRAGNL   +LGAE  SDVTS SGPVKL DLQRILS+I PA+ AG+PD GLGL DILKPDLI+PLIETL +E+RLASYLPEGQW PEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALED+V K S   QD+KD R Q CN N+PMDE+
Sbjct:   60 DQIVFPDEAVFEKVNQASGRIYILKFNTDNRKFFFWMQEPKAEGDSQLCNSVNYHINRPLEFLGEEEQDVSGPVQISEDMVEDDISSRAGNLVGPSLGAEVTSDVTSLSGPVKLADLQRILSNIEPADGAGDPDEGLGLADILKPDLILPLIETLPMEQRLASYLPEGQWNPEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDTVCKAS---QDDKDSRSQ-CNDNEPMDEA 309

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy TrEMBL
Match: I1K657_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 393.66 bits (1010), Expect = 6.134e-126
Identity = 198/258 (76.74%), Postives = 225/258 (87.21%), Query Frame = 3

Query: 1092 DQIIFPDEAVFEKVNQASGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPLEL-GVDEPDASEPLQAFEDMVEDDISSRAGNLTVTNLGAEAISDVTSSSGPVKLKDLQRILSSIGPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSK---TSGETQDEKDVRPQSCNRNDPMDESK 1853
            DQIIFP+EA+FEKVNQ SGRVYILKFN+DDRKFFFWMQE  A+ DSQLC +VN++IN+PLEL G +EPD S PLQ  EDM EDDISSRA NL + NLG EA SDVTSS GPVKL+DLQRILS+IGPA+   +PDGGLGL DILKPDLIMPL++ L LE+RLA YLPEG+W+PE++LELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSK   +    QD++D+R QSCNR+DPMDES+
Sbjct:   65 DQIIFPNEAIFEKVNQTSGRVYILKFNSDDRKFFFWMQESNADGDSQLCSSVNDYINRPLELLGEEEPDGSLPLQISEDMTEDDISSRAANLGIPNLGVEATSDVTSS-GPVKLEDLQRILSNIGPADSIVDPDGGLGLGDILKPDLIMPLMDMLPLEQRLAPYLPEGKWSPEEILELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSKSVESEEARQDDQDLRSQSCNRHDPMDESQ 321

HSP 2 Score: 71.633 bits (174), Expect = 4.715e-10
Identity = 33/44 (75.00%), Postives = 37/44 (84.09%), Query Frame = 1

Query:  127 MGSSFGEAFPAMQETLLEFRAGKMMLEGKRVVPDTRKGLIRIAR 258
            M SS  + FPA+QE +LEFRAGKM LE KRVVPDTRKGL+RIAR
Sbjct:    1 MSSSSADVFPAIQEVMLEFRAGKMFLEEKRVVPDTRKGLVRIAR 44

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy TrEMBL
Match: A0A0B2NXB0_GLYSO (Proteasomal ubiquitin receptor ADRM1 OS=Glycine soja GN=glysoja_017560 PE=4 SV=1)

HSP 1 Score: 393.66 bits (1010), Expect = 6.134e-126
Identity = 198/258 (76.74%), Postives = 225/258 (87.21%), Query Frame = 3

Query: 1092 DQIIFPDEAVFEKVNQASGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPLEL-GVDEPDASEPLQAFEDMVEDDISSRAGNLTVTNLGAEAISDVTSSSGPVKLKDLQRILSSIGPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSK---TSGETQDEKDVRPQSCNRNDPMDESK 1853
            DQIIFP+EA+FEKVNQ SGRVYILKFN+DDRKFFFWMQE  A+ DSQLC +VN++IN+PLEL G +EPD S PLQ  EDM EDDISSRA NL + NLG EA SDVTSS GPVKL+DLQRILS+IGPA+   +PDGGLGL DILKPDLIMPL++ L LE+RLA YLPEG+W+PE++LELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSK   +    QD++D+R QSCNR+DPMDES+
Sbjct:   65 DQIIFPNEAIFEKVNQTSGRVYILKFNSDDRKFFFWMQESNADGDSQLCSSVNDYINRPLELLGEEEPDGSLPLQISEDMTEDDISSRAANLGIPNLGVEATSDVTSS-GPVKLEDLQRILSNIGPADSIVDPDGGLGLGDILKPDLIMPLMDMLPLEQRLAPYLPEGKWSPEEILELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSKSVESEEARQDDQDLRSQSCNRHDPMDESQ 321

HSP 2 Score: 71.633 bits (174), Expect = 4.715e-10
Identity = 33/44 (75.00%), Postives = 37/44 (84.09%), Query Frame = 1

Query:  127 MGSSFGEAFPAMQETLLEFRAGKMMLEGKRVVPDTRKGLIRIAR 258
            M SS  + FPA+QE +LEFRAGKM LE KRVVPDTRKGL+RIAR
Sbjct:    1 MSSSSADVFPAIQEVMLEFRAGKMFLEEKRVVPDTRKGLVRIAR 44

The following BLAST results are available for this feature:

BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy Swiss-Prot
BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy TrEMBL

BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 13


Match Name	E-value	Identity	Description
RPN13_ARATH	1.781e-103	69.33	26S proteasome regulatory subunit RPN13 OS=Arabido...	[more]
ADRM1_DANRE	1.304e-13	51.67	Proteasomal ubiquitin receptor ADRM1 OS=Danio reri...	[more]
ADRM1_XENTR	5.521e-13	50.00	Proteasomal ubiquitin receptor ADRM1 OS=Xenopus tr...	[more]
ADM1B_XENLA	6.899e-13	50.00	Proteasomal ubiquitin receptor ADRM1-B OS=Xenopus ...	[more]
ADRM1_CHICK	1.139e-12	39.18	Proteasomal ubiquitin receptor ADRM1 OS=Gallus gal...	[more]
ADRM1_HUMAN	1.166e-12	39.18	Proteasomal ubiquitin receptor ADRM1 OS=Homo sapie...	[more]
ADRM1_BOVIN	1.176e-12	51.67	Proteasomal ubiquitin receptor ADRM1 OS=Bos taurus...	[more]
ADM1A_XENLA	1.496e-12	48.33	Proteasomal ubiquitin receptor ADRM1-A OS=Xenopus ...	[more]
ADRM1_RAT	3.011e-12	39.18	Proteasomal ubiquitin receptor ADRM1 OS=Rattus nor...	[more]
ADRM1_MOUSE	5.032e-12	51.67	Proteasomal ubiquitin receptor ADRM1 OS=Mus muscul...	[more]

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BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A067F3S0_CITSI	6.926e-127	79.07	Uncharacterized protein OS=Citrus sinensis GN=CISI...	[more]
V4WI59_9ROSI	6.926e-127	79.07	Uncharacterized protein OS=Citrus clementina GN=CI...	[more]
A0A097PT32_VITVI	2.411e-126	79.92	Regulatory particle non-ATPase 13 (Fragment) OS=Vi...	[more]
I1K657_SOYBN	6.134e-126	76.74	Uncharacterized protein OS=Glycine max PE=4 SV=1	[more]
A0A0B2NXB0_GLYSO	6.134e-126	76.74	Proteasomal ubiquitin receptor ADRM1 OS=Glycine so...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032368	UCH-binding domain	PFAM	PF16550	RPN13_C	coord: 81..186 e-value: 1.6E-25 score: 89.3
IPR006773	26S proteasome complex ubiquitin receptor, subunit Rpn13	PANTHER	PTHR12225	ADHESION REGULATING MOLECULE 1 110 KDA CELL MEMBRANE GLYCOPROTEIN	coord: 1..218

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.barbadense_cottongen_reftransV1_0097348 ID=g.barbadense_cottongen_reftransV1_0097348; Name=g.barbadense_cottongen_reftransV1_0097348; organism=Gossypium barbadense; type=contig; length=2544bp
CTCGGCCGCTTTTGATATACAGAATCTGAGCTTTCCAATCTTTACATGCA
AAAGAAAATTTGATCAAATTTCTGCGAAAAATAAAGCTATATATATAAAA
AGCAGCTATTGAAAGAAGTGGAGCTGATGGGTTCGTCTTTCGGTGAAGCT
TTTCCAGCAATGCAGGAAACTTTGCTGGAGTTTCGTGCTGGTAAAATGAT
GTTGGAAGGAAAAAGGGTTGTCCCTGATACACGTAAAGGGCTCATTCGCA
TAGCTAGGGTATTATCAATTAAAGAACTTTCGGTTATACCTATTTTATCT
TTTGGGTTTTATTAGTTTTTTGCATTATGTGTTTAGATAATGGAATTGTT
ATCTGTTTTAGATTATTTTTATCTGAAACTGTTGTGAGCTTACCACGTTT
CTGTTCCAGGGTGAGGAGGGACTGGTTCATTTTCAGTGGCTTGATCGGAC
TCAAAATGTTATTGAAGATGTATCCCGCTTCCTATAGTTTGCTTTTGTTG
TTTTACTTAAAATATTTTATTCTGTATGAACATTGAGGCTTGCAGGTTTT
ATCGTAGCAGCCTTTCAGTTTTGACTTTTATATGCTGCTTCTGATTTTGT
AGTCTAGGAATCAATTTTGCATGTACGTGTCTGTGTATATGCATGCATTT
CATTCTAAAATGTAGTTTGGGGGTCTTTTAGAGTTTAATATAAGTTCAGC
ATGTATGCTTGTTAACACATTGTATGTGTATACTTTTCATGTTAACTATT
AGTCACATTAGTTCTATCTTCTCATCTTGTTAATATCTGGAATAGTTTGC
TATGTTGTCCATCTTTGCTATTTAGAAGTCAGAAGCAATGTTGTCTGATA
GGTCACATTGTTTTATTTTATGTATAAGTTTCCATCTGGTTAACTGATAT
GGTTAAGAATTGATTTTTAATTCTTTTCCTTTAATAGCTTAGTTTCATTG
TTAATATTCAGACCTGTGATTAACATTCTATGCCTACTTTACCCTGTTAT
TATTGCTTGATTCATAAAAATGTTAATATAACATGTTGTGAGTACTCTTT
TTTCTTTCCCTTTCCCTTTTCCTTCACATGACATATTATAGGATCAGATT
ATTTTCCCCGATGAGGCTGTTTTTGAGAAGGTTAATCAAGCATCAGGCAG
GGTTTACATATTAAAGTTCAATACCGACGACCGGAAGTTCTTTTTCTGGA
TGCAGGAGCCGAAAGCTGAAGATGACTCACAATTATGTTGCGCGGTCAAT
AATTTCATCAATCAACCATTAGAACTTGGTGTAGATGAGCCTGATGCTTC
TGAGCCTTTGCAAGCGTTTGAAGACATGGTTGAAGATGATATTTCATCAA
GAGCTGGAAACTTGACTGTTACAAACTTAGGTGCTGAAGCGATTAGTGAT
GTAACCTCTTCATCAGGGCCAGTTAAATTGAAAGACTTGCAAAGAATACT
GAGCAGTATTGGTCCAGCAGAGGTAGCTGGTGAGCCAGATGGAGGCTTGG
GGTTGGATGATATTTTGAAGCCAGATTTGATAATGCCATTAATTGAGACA
TTGTCATTGGAAGAGCGATTAGCTTCATATTTACCAGAGGGTCAATGGAC
ACCTGAGGATTTGTTAGAGTTGCTGCAGAGTCCTCCTTTCCGTCAGCAAG
TAGATTCATTTACCTATGTACTTCGAACCGGACAGATAGATTTGTCTCAG
TTCGGTATTGATCCAAGTAAATATAAGTTCACCGTTTTATCTTTCCTTGA
GGCACTTGAAGATTCTGTTTCCAAAACTTCTGGAGAAACACAAGATGAAA
AAGATGTAAGACCTCAATCCTGTAATCGTAATGACCCCATGGATGAGAGC
AAGTGACAGATAATTTCATCTGCTACCGTTCCCATCACTCTCATTTATCA
TAGGAGAGAATAGTTCATCCCTGTTTTAATTTATTCTTCTTGTTTGGGTG
GGTGTTCTGGAAAAAAAAAAGGCAGAAAAAAGAAAGCAATGAAGAATGGA
AATGGTTTTTATTGTGGTTCAAAGTTTTAAGCTATTGTATAATACAACCC
AAAAAACAAAAACAAAAAAAGAAGAAAAAATTGTGTTGAAGATTAAGTGG
ATAATTTCTTGGTTTTTTTAGGACCATTTTTAATACCTTTTGAACATACA
CGGAAAGCATTGAATTGGTGAAAACATATAAAGGTCAAGTGTATGTTGGT
CTGTTGGATTTTTGTTACATTCGAATTCCTATCAGTTTTTTGTGTGTTTT
ATTGCTCTATGGTTATGGTTTCCATTAGACCTGAAAATTGGGCTTGAGTC
AATCTAGGTCTGGTCATTTTGGGTTTTAAATTTTCAGGTTTAGATCATTT
TAAGTTTGGATTGTTTCTGACTAGAATCATTTTGGGTTTGTATTGTTGGG
ATTTGTTTGTTAGGGTTTTTGAGTCAAGATCATAGGTTTTTTCAGGGTAA
AGTGCCATGGAGGTCTTTGTATTAGGAGTCAAATTATATTTTGCCCCCTA
CTTAAAAAAGGGTAAATTAGTTCTTGTATGTTAGATTAAAGTGC

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR032368	RPN13_DEUBAD
IPR006773	Rpn13/ADRM1

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus
GO:0005737	cytoplasm

Search form

g.barbadense_cottongen_reftransV1_0097348, g.barbadense_cottongen_reftransV1_0097348 (contig) Gossypium barbadense

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