g.barbadense_cottongen_reftransV1_0097326, g.barbadense_cottongen_reftransV1_0097326 (contig) Gossypium barbadense

Overview
Nameg.barbadense_cottongen_reftransV1_0097326
Unique Nameg.barbadense_cottongen_reftransV1_0097326
Typecontig
OrganismGossypium barbadense (Sea Island cotton)
Sequence length3518
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Dt13chromosomeg.barbadense_cottongen_reftransV1_0097326:1..3518 .
Dt13:58958724..58965146 -
Homology
BLAST of g.barbadense_cottongen_reftransV1_0097326 vs. ExPASy Swiss-Prot
Match: RIF1_MOUSE (Telomere-associated protein RIF1 OS=Mus musculus GN=Rif1 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.121e-14
Identity = 83/346 (23.99%), Postives = 155/346 (44.80%), Query Frame = -1
Query: 2226 IHNEDEEIAAQALKCLGFMIYHPSLVATIPAGDGKRVLESLAKLITFTKMKSVCNLGVWCISMQQFDATLLAACFDTLLQAVVHALD-NPIGSLSTTFEAMQAVAKLVAQMSEMMRESSHLWA----PPIYRRLLSIDKRER---DMSERCLLKIRSTILPPPISLSKAIIED--MREKLLTGMKDWSDKGMKVQTVQAWGWFICFLGSGALKNRHLVNDMLKVLEQTFSDHNPQVQIASLVAWQGLIDAL-VHPQILSCKKNGIQQLQTSPGKSSELVLNGFSKSLKLAMAPLIGI-ISSKCDVSVLLSCLNTWCYLLHKLDTFINSPSVINVVLDPMFQAIFKI 3227
            I +++ E+++ AL+ LGF +Y+P + + +   + + +L +L  +I  +  K+VC   +W IS Q F A L++    +++ ++   L    I S    FEA+  + +L+ Q    M E S  WA    P +      +  R     +M    LL+ +  I         A+I +  M  KL++ ++       +   ++ W  F+  LG    ++   +N +L++ E  F    P ++  + +AW+ LID   ++P IL C                       +K LKL M PL  I + ++   ++ L+ L  W YLL +L   +  P+    V  P+ Q+   +
Sbjct:   64 ISSQNSELSSAALQALGFCLYNPRITSGLSEANIQELLLTLNGIIKSSD-KNVCTRALWVISKQTFPAELVSKMVSSIIDSLEVILSKGEIHSAVVDFEALNVIIRLIEQAPVQMGEESVRWAKLVIPLVVHSAQKVHLRGATALEMGMPLLLQKQQEI---------ALITEHLMTTKLISELQKLFKNKNETYVLKLWPLFVKLLGKTLHRSGSFINSLLQLEELGFRSGTPMIKKIAFIAWKSLIDNFALNPDIL-CS----------------------AKRLKLLMQPLSSIHVRTE---TLALTKLEVWWYLLMRLGPQL--PANFEQVCVPLIQSTISV 371          
BLAST of g.barbadense_cottongen_reftransV1_0097326 vs. ExPASy Swiss-Prot
Match: RIF1_HUMAN (Telomere-associated protein RIF1 OS=Homo sapiens GN=RIF1 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.552e-11
Identity = 81/357 (22.69%), Postives = 155/357 (43.42%), Query Frame = -1
Query: 2187 IHNEDEEIAAQALKCLGFMIYHPSLVATIPAGDGKRVLESLAKLITFTKMKSVCNLGVWCISMQQFDATLLAACFDTLLQAVVHALD-NPIGSLSTTFEAMQAVAKLVAQMSEMMRESSHLWA----PPIYRRLLSIDKRER---DMSERCLLKIRSTILPPPISLSKAIIEDMREKLLTGMKDWSDKGMKVQTVQAWGWFICFLGSGALKNRHLVNDMLKVLEQTFSDHNPQVQIASLVAWQGLIDAL-VHPQILSCKKNGIQQLQTSPGKSSELVLNGFSKSLKLAMAPLIGI-ISSKCDVSVLLSCLNTWCYLLHKLDTFINSPSVINVVLDPMFQAIFKIGPDSKSIRLWNLC 3227
            I +++ E+++ AL+ LGF +Y+P + + +   +   +L  L   I  +  K+V    +W IS Q F + ++     +++ ++    +     S    FEA+  + +L+ Q    M E +  WA    P +      +  R     +M    LL+ +  I     S+++ +   M  KL++ ++       +   ++ W  F+  LG    ++   +N +L++ E  F    P ++  + +AW+ LID   ++P IL C                       +K LKL M PL  I + ++   ++ L+ L  W YLL +L   +  P+    V  P+ Q+   I  DS +    N C
Sbjct:   64 ISSQNSELSSAALQALGFCLYNPKITSELSEANALELLSKLNDTIKNSD-KNVRTRALWVISKQTFPSEVVGKMVSSIIDSLEILFNKGETHSAVVDFEALNVIVRLIEQAPIQMGEEAVRWAKLVIPLVVHSAQKVHLRGATALEMGMPLLLQKQQEI----ASITEQL---MTTKLISELQKLFMSKNETYVLKLWPLFVKLLGRTLHRSGSFINSLLQLEELGFRSGAPMIKKIAFIAWKSLIDNFALNPDIL-CS----------------------AKRLKLLMQPLSSIHVRTE---TLALTKLEVWWYLLMRLGPHL--PANFEQVCVPLIQSTISI--DSNASPQGNSC 382          
BLAST of g.barbadense_cottongen_reftransV1_0097326 vs. ExPASy TrEMBL
Match: A0A059CNX0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C01385 PE=4 SV=1)

HSP 1 Score: 684.871 bits (1766), Expect = 0.000e+0
Identity = 397/858 (46.27%), Postives = 549/858 (63.99%), Query Frame = -1
Query:  882 LISSNSKTDQSLGYSTLLHFQEQSCDSPPSIQALIQSSRCLINSIVSDIHNEDEEIAAQALKCLGFMIYHPSLVATIP------AGDGKRVL--ESLAKLITFTKMKSVCNLGVWCISMQQFDATLLAACFDTLLQAVVHALDNPIGSLSTTFEAMQAVAKLVAQMSEMMRESSHLWAPPIYRRLLSIDKRERDMSERCLLKIRSTILPPPISLSKAIIEDMREKLLTGMKDWSDKGMKVQTVQAWGWFICFLGSGALKNRHLVNDMLKVLEQTFSDHNPQVQIASLVAWQGLIDAL-VHPQIL-SCKKNGIQQLQTSPGKSSELVLNGFSKSLKLAMAPLIGIISSKCDVSVLLSCLNTWCYLLHKLDTFINSPSVINVVLDPMFQAIFKIGPDSKSIRLW--NLCLDLLEDSISTKCSDLNSDPKDQVNLHLSARTFISG---SGRYSWNQYPIKWLPWDLSQLDFYLKMXXXXXXXXXXXXXAPESKKSV-CDAAVRIFRSVLKGVQMEFRNPSNNYDNIMFCLNTILSFMKKLGEDASSDGGGDL-----FNTSLYLIEAAVEELEPSIMESPLYKVALDISYVGSLDSVKHSKIP---HRCSFMDIFSPMXXXXXXXXXXXXXXTINTPEMELILQRLQRFYKFVLSSDDPLESFLASVGFLYAHMGFKYMEIWMVMVTCLNGYIDGMKDLSLFRTDSDNSFYRAICHLLSYPFILFSCAKKDITLSKASNPLKESFVLSERKLE--QVIEVWKSLFGSVCVACLKSSATNTLSHDLCAMLNSCFDENSSMFQYNSELGYK--DLELACLSFSGKVLVCILEQKLTSDTIGRECVGVCNGSSGINNIFEFASR 3371
            L S ++   +SL YS LL  QE+S   P +I+AL   SR L++ +V D+ +EDEEIA QA+KCLGFMI+HP+++A+IP      +    R+L  +S     +F  M+SVCNLG+WCISMQQFD +LL A F +LL+A+VHALDNP GSLSTTFEA+QAV K+ +Q+ EMMR SSH+W PP+YRRLLS DKRERDM+ERCLLKI+S +LPPP +LSK +  DM+E+LL  MKD  ++G KVQTV+AWGWFI  LG  AL+ R L+NDMLK+ E TFSD + +VQIAS V    +I +L V  Q   + K+  +Q+   S   + + + +GF KS+KL M PLIGI SSK D+SV  SC NTWCYLLHKLD ++N P V N+VLDP+F+A F  GP    +R W  NLCLDLL+DSIS K      D  DQV  ++S +T   G   SGR+SWNQYPIKWLPWD  QLDFY+++I  I      + A     +S+ CDAA+R+FRSVLK VQMEFR+PS NYD+IM+ L  IL F+KK+ EDA+  G GD      ++TS   I+A  E+L+PSI+ SPLYK+ LD+ YV + +SV   + P      ++MD+ SP+    ++   +V+Q  ++  + E       ++ + VLSSDDP E+       LY H  F  +E+W  +   L  +++   D SL +   +   +  I HLLSYPF ++S  K+ I  + A++   E  V + RK E   +IE W SL+G V    ++  A NT    LC++LN C   N+SM ++ ++LG    +  +  +SF G +L  I+EQ L S+      V +   ++G +++  FA++
Sbjct:   15 LASPDAGAGKSLAYSALLRLQERSVSDPDAIRALAGRSRSLVSLLVGDVRDEDEEIAVQAMKCLGFMIHHPAILASIPGRLCCNSHIYNRILPSQSFKSNFSFIGMQSVCNLGMWCISMQQFDGSLLNAHFQSLLKAIVHALDNPFGSLSTTFEAIQAVMKIASQLGEMMRASSHIWIPPLYRRLLSTDKRERDMTERCLLKIKSIMLPPPPTLSKVLALDMKERLLVSMKDMLEQGFKVQTVRAWGWFIRLLGDRALRKRCLLNDMLKIPELTFSDQDVRVQIASQVLPTTVIHSLDVQAQRSNTTKEKQMQRTNKSRFDTDDSLSSGFLKSIKLIMTPLIGIFSSKSDLSVHSSCFNTWCYLLHKLDIYVNHPLVRNLVLDPVFEAAFHSGP--LIMRTWFCNLCLDLLDDSISAKLGIDEKDSDDQVGQNMS-KTPNQGNLISGRFSWNQYPIKWLPWDPCQLDFYIQVIQTICEVSIASVAQSNEDRSLTCDAALRMFRSVLKLVQMEFRSPSTNYDDIMWILKQILMFVKKICEDANL-GCGDRKGTRSYHTSFLFIQAIFEQLQPSILGSPLYKIPLDLKYVENWESVDDFRRPLDMRDITYMDMVSPV-VYLIVLYHVVIQSHLDKSKAEATPWGSCKYMEIVLSSDDPSENLALINALLYKHANFSCLELWSAVAGGLKDHMNAANDPSLVQKAFN---FSTIIHLLSYPFYVYSHQKEKIVDTNAADSSGEYHVSALRKPEVSHLIEEWISLYGFVSTMDIQLPAPNTFHGLLCSILNDCLQGNTSMLEHGNDLGSSSDNPVIDFISFYGNLLTYIVEQNLKSE------VRIDGITAGSDSVLHFAAK 858          
BLAST of g.barbadense_cottongen_reftransV1_0097326 vs. ExPASy TrEMBL
Match: U5D6C2_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00046p00132680 PE=4 SV=1)

HSP 1 Score: 630.172 bits (1624), Expect = 0.000e+0
Identity = 402/1028 (39.11%), Postives = 592/1028 (57.59%), Query Frame = -1
Query:  195 GKRVLESLAKLITFTKMKSVCNLGVWCISMQQFDATLLAACFDTLLQAVVHALDNPIGSLSTTFEAMQAVAKLVAQMSEMMRESSHLWAPPIYRRLLSIDKRERDMSERCLLKIRSTILPPPISLSKAIIEDMREKLLTGMKDWSDKGM-KVQTVQAWGWFICFLGSGALKNRHLVNDMLKVLEQTFSDHNPQVQIASLVAWQGLIDALVHPQILSCKKNGIQQLQTSPGKSSELVLNGFS--------KSLKLAMAPLIGIISSKCDVSVLLSCLNTWCYLLHKLDTFINSPSVINVVLDPMFQAIFKIGPDSKSIRLWNLCLDLLEDSISTKCSDLNSDPKDQVNLHL----SARTFISGSGRYSWNQYPIKWLPWDLSQLDFYLKMXXXXXXXXXXXXXAPESKKSVCDAAVRIFRSVLKGVQMEFRNPSNNYDNIMFCLNTILSFMKKLGEDASSD----GGGDLFNTSLYLIEAAVEELEPSIMESPLYKVALDISYVGSLDSVKHSKIPHR-------CSFMDIFSPMXXXXXXXXXXXXXXTINTPEMELILQRLQRFYKFVLSSDDPLESFLASVGFLYAHM--GFKY--MEIWMVMVTCLNGYIDGMKDLSLFRTDSDNSFYRAICHLLSYPFILFSCAKKDITLSKASNPLKESFVLSERKLE--QVIEVWKSLFGSV-CVACLKSSATNTLSHDLCAMLNSCFDENSSMFQYNSELGYK-DLELAC--LSFSGKVLVCILEQKLTSDTIG------RECVGVCNGSSGINNIFEFASRVMKFMYINMGREPASGL-VSSRVFSTLTRFISCLHSKQDILSFFEIISGLLLQWLSHLEIKDE-----NAKDQLGILWAESLNCLQRSQPPLTFDSSFLKLQASLLEKTLDHPNTSVSDPTIIFWNSTYGKQISLDYPQNLLHVLHKLS---RNGRISLYNRSKSFVARCSTLENDTVTTPRYCKITATQK-SSKRVELTEEGMIPGSNQXXXXXXXXXXXRVELTEHQKEVRRAQQGR 3128
             + ++ESL KLI  TKMK++CNL VWCIS+QQF ++ LA+  +TLL+AVV+A+DNP GSLSTTFEA+Q   KL  QM + MRESSH+WAP I RRL S++KR+RDM+ERCL KI+S ILPPP+ LSKAI  D++ + L+ M+      + KV  +QAWGW I  LGS  L+ RHL+N+MLK+ E+TFS  +PQVQIAS VAW+ LID L+   + +   N I    +  G       +G          K +KL M PL+G++SS CD+ V L+ LN W Y+LHKLD F+N PS+  VVL+P+F+A+F++GPD ++I +W+ CLDL ++ +S+K       PK QV  ++    S       S + SW+ +PIKWLPWDL++L+FYL M+ II  +      A E  K   DA++RIF+S+L+ V++E +  S  +D I+  ++ +LSF K +    + +       D     L  IE  + ELE  +++SPLYKV LDI  +  L   + ++  ++         +MD+ SPMVY+ VLY  +V        E + I+ RLQ+F + + S  +PL+     +G LY +M   F++   ++W V+   LN  ID +K L   R+DSDN+ Y  + + L  P  L+   +K + + ++S  +      SE  LE    +EVW+SL+ S   V+ ++ S+ N  +  +C  L     +   + Q  +++  K +L   C  L   G++++ +L+Q L  ++         +     + SS I N  EF +R ++ +   +   P   L V  R F+++T F+S L  K+DIL F EIIS  L QWLS   I ++     + + QL I W E+L+CL+RS+PPL F+SS L LQA LL   L+HP++++SD TI FW +TYGK   + YP  L  +L  L     N  ++  N + S   +C               +  TQK SSKRV      + P  + +      SKRK  ELTEHQ EVRRAQQGR
Sbjct:   38 AQDIIESLEKLIMTTKMKAICNLAVWCISVQQFSSSFLASHQETLLKAVVYAIDNPFGSLSTTFEAIQGAVKLATQMGKTMRESSHVWAPCICRRLFSLNKRDRDMAERCLQKIKSIILPPPLRLSKAIALDIKHRFLSDMEKMLQLPLCKVHVIQAWGWLIRLLGSHVLRKRHLLNEMLKIPEKTFSCPDPQVQIASQVAWEALIDILLQQPVKANGTNVIHVPSSHEGLRPSHASSGNYDAERDVPLKRIKLLMTPLVGVLSSACDIPVRLASLNMWHYILHKLDVFVNHPSIQEVVLEPIFKAVFQMGPDDRNIFIWSRCLDLFDELVSSKIDKGFDAPKKQVVAYIWPPDSGSYEPCLSAKMSWHDHPIKWLPWDLNRLNFYLNMVQIIRRYCLGKGMADEYVKRGLDASLRIFKSLLQRVKIELKGTSRPFDEIVLIIHELLSFTKDIYATVTLEHPIISVTDWQCNVLQFIEVVIAELEHDVLKSPLYKVPLDIQEIQKLQCPQDTERANQNMSGSGFLVYMDLVSPMVYIIVLYFVVVAHSLSALEENQFIMNRLQKFSEMICSICEPLDELNHFIGMLYLYMQNDFRWGLFKMWRVLARGLNDRIDSVKYLHFLRSDSDNTGYAIVYYSLCCPLELYISLEK-MNMKESSGYMNFHVSPSELSLELDLTLEVWRSLYYSANHVSNIEGSSINRFAEGMCRRLTELVSKRYIVSQSETQIRLKEELNGRCSFLFLIGELVIYVLKQTLVLNSQNLILKNRNQEESKKSDSSNIRNYLEFVARYLRLLLTIVNTLPEVELDVILRTFASMTIFVSHLCLKKDILLFMEIISDPLAQWLSLCSILNQETNRGDLQHQLSIFWTETLDCLRRSKPPLLFNSSLLTLQAPLLGIALNHPHSAISDATISFWQATYGKNTKISYPHYLFPILVNLKIVDANAPLACDNPAISADTKC-------------VGVNVTQKGSSKRV------VAPMQDCDALFVGPSKRKCSELTEHQMEVRRAQQGR 1045          
BLAST of g.barbadense_cottongen_reftransV1_0097326 vs. ExPASy TrEMBL
Match: K3XUX9_SETIT (Uncharacterized protein OS=Setaria italica GN=Si005736m.g PE=4 SV=1)

HSP 1 Score: 454.521 bits (1168), Expect = 2.103e-136
Identity = 327/988 (33.10%), Postives = 506/988 (51.21%), Query Frame = -1
Query:  495 SKTDQSLGYSTLLHFQEQSCDSPPSIQALI-QSSRCLINSIVSDIHNEDEEIAAQALKCLGFMIYHPSLVATIPAGDGKRVLESLAKLITFTKMKSVCNLGVWCISMQQFDATLLAACFDTLLQAVVHALDNPIGSLSTTFEAMQAVAKLVAQMSEMMRESSHLWAPPIYRRLLSIDKRERDMSERCLLKIRSTILPPPISLSKAIIEDMREKLLTGMKDW-SDKGMKVQTVQAWGWFICFLGSGALKNRHLVNDMLKVLEQTFSDHNPQVQIASLVAWQGLIDALVHPQILSCKKNG--IQQLQTSPGKSSELVLNGFSKSLKLAMAPLIGIISSKCDVSVLLSCLNTWCYLLHKLDTFINSPSVINVVLDPMFQAIFKIGPDSKSIRLWNLCLDLLEDSISTKCSDLNSDPKDQVNLHLSARTFISGSGRYSWNQYPIKWLPWDLSQLDFYLKMXXXXXXXXXXXXXAPESKKSVCDAAVRIFRSVLKGVQMEFRNPSNNYDNIMFCLNTILSFMK-KLGEDASSDGGGD----LFNTSLYLIEAAVEELEPSIMESPLYKVALDISYVGSLDSVKHSKIPHRCSFMDI--FSPMXXXXXXXXXXXXXXTINTPEMELILQRLQRFYKFVLSSDDPLESFLASVGFLYAHM--------GFKYMEIWMVMVTCLNGYIDGMKDLSL--FRTDSDNSFYRAICHLLSYPFILFSCAKKDITLSKASNPLKESFVLSERKLEQVIEVWKSLFGSVCVACLKSSATNTLSHDLCAMLNSCFDENSSMFQYNSELGYKDLE-LACLSFSGKVLVCILEQKLTSDTIGRECVGV---CNGSSGIN---NIFEFASRVMKFMYINMGREPAS-GLVSSRVFSTLTRFISCLHSKQDILSFFEIISGLLLQWLS-----HLEIKDENAKDQLGILWAESLNCLQRSQPPLTFDSSFLKLQASLLEKTLDHPNTSVSDPTIIFWNSTYGKQISL 3356
            ++ D++  Y+ LLH Q  S D P +   L  +    L+  ++ D  + DE +AA ALKCLGF +YHP+LV+T+ A   + VL++L +LI  T+MKSVCNLG+WCIS+QQ +  ++    D ++ A+V+ALDNP GSLSTTFEA QA+ KL  Q  + MR+ S LW PPIY+RLLS DK ERDM+ERCL+K+   ILPP   LSKA+  D+  KLL+ M +   D   KVQ V++WGW I FLG  A+ NR L+N +LKV EQ F D + QVQIA++V+W+ L+DA    Q    + +   I  L+     S+++      K  +L M PL  ++S   ++ +  SCL+TW YLLH+L   IN   ++     P+ + IF +G + ++  LW+ C++L  D   +K S    D    VN +L A++ +       +    IKWLPWD+    F L ++  I+         PE    V D+A  IF+ +L GVQ+E +    +Y+ +  C+  +  F+K KL  D      G+    L    L  +E  V EL+ S++ S   ++ LDI ++     +++++   + SF  I   S M  ++       + LT+      ++          +LSS D L+SF   V F+Y  +          K++ +W       N +   + D+++   +    +S Y  +     YPF  F      +++   +     + V+ + ++E  IEV++SL  S   +C   +A           L +  DE++++FQ N E   +  E  A LS  G+V++ +LE         +E         GS  +N   +    A+R MKF        PA    V+SR FS+L+ F+  +  K+DIL  FEII   L +WLS     + E++      QL  LW + L CL  SQ  L  D    + Q  LL+  L HP+ ++S  T     +    +ISL
Sbjct:   15 AEPDRAAAYACLLHLQRGSADDPSAAADLAAELPSPLLPLLLRDAADPDEAVAASALKCLGFALYHPALVSTVSAQMSQAVLDTLVQLIMNTRMKSVCNLGIWCISVQQLEPLIIDDRADLIVAAIVYALDNPFGSLSTTFEAAQAIMKLACQSHKRMRDLSSLWVPPIYQRLLSADKPERDMAERCLIKVSHVILPPQPLLSKAVALDLERKLLSHMMNMLDDASKKVQVVKSWGWIISFLGPDAVNNRPLLNKLLKVPEQMFIDLDTQVQIATMVSWRNLVDAFFPSQATESESHETVIAPLEPREHASAQV------KRTRLIMVPLCRVLSRSRNIVLSSSCLSTWNYLLHRLGNLINCLPILEAAFAPILKIIFSVGINDQNKPLWSFCMNLFHDFSKSK-SRHREDLCTPVNWNLVAQSCMHLKALLDFQH--IKWLPWDIGCFHFQLDILGTILNPELFQDMIPEKMLIVMDSATEIFKFLLGGVQIELKEKC-SYEQVRLCITDVCKFVKTKLFLDHVGKHSGNKCAMLLEFGLQFVEVIVGELDHSLLNSEKIEICLDIEHI---KEIQYAECTRKFSFPGIRPLSYMEMVSPAVYMTALSLTMVAQYTGVLSHGDAEKLALILSSSDILKSFHVVVAFMYMQIMCPIFNRQRLKWLMVW-------NKFAKQLNDITISYLKASPGSSSYDVLHQFFCYPFFSF-LYPGGLSIPWNAENSSCAPVMQDLEVELAIEVYRSLCTS---SCNSKAAPKVFFEGFYDYLVNIIDEHTALFQANLEHCPEKFENTAILSALGEVVIGLLENDQILAYANQELNEANEDFTGSRHLNLFLSCLNLANRFMKFSRFGFKANPAGQHQVTSRFFSSLSNFVRHVVLKKDILLLFEIIGDQLTEWLSLSATLYCEMQQGKIIYQLEKLWLKILKCLNMSQ--LISDGPLSQKQ-QLLQVALSHPHDAISVATASACRAEANIKISL 975          
BLAST of g.barbadense_cottongen_reftransV1_0097326 vs. ExPASy TrEMBL
Match: J3MBQ2_ORYBR (Uncharacterized protein OS=Oryza brachyantha GN=OB06G14460 PE=4 SV=1)

HSP 1 Score: 446.432 bits (1147), Expect = 9.271e-135
Identity = 332/981 (33.84%), Postives = 513/981 (52.29%), Query Frame = -1
Query:  537 DQSLGYSTLLHFQEQ-SCDSPPSIQALIQSSRCLINSIVSDIHNEDEEIAAQALKCLGFMIYHPSLVATIPAGDGKRVLESLAKLITFTKMKSVCNLGVWCISMQQFDATLLAACFDTLLQAVVHALDNPIGSLSTTFEAMQAVAKLVAQMSEMMRESSHLWAPPIYRRLLSIDKRERDMSERCLLKIRSTILPPPISLSKAIIEDMREKLLTGMKDW-SDKGMKVQTVQAWGWFICFLGSGALKNRHLVNDMLKVLEQTFSDHNPQVQIASLVAWQGLIDALVHPQILSCKKNGIQQLQTSPGKSSELVLNGFSKSLKLAMAPLIGIISSKCDVSVLLSCLNTWCYLLHKLDTFINSPSVINVVLDPMFQAIFKIGPDSKSIRLWNLCLDLLEDSISTKCSDLNSDPKD---QVNLHLSARTFISGSGRYSWNQYPIKWLPWDLSQLDFYLKMXXXXXXXXXXXXXAPESKKSVCDAAVRIFRSVLKGVQMEFRNPSNNYDNIMFCLNTILSFMK---KLGEDASSDGGGDLFNTSLYLIEAAVEELEPSIMESPLYKVALDISYVGSLDSVKHSKIPH-RC------SFMDIFSPMXXXXXXXXXXXXXXTINTPEMELILQRLQRFYKFVLSSDDPLESFLASVGFLYAH--------MGFKYMEIWMVMVTCLNGYIDGMKDLSLF-RTDSDNSFYRAICHLLSYPFILFSCAKKDITLSKASNPLKESFVLS-ERKLEQVIEVWKSLFGSVCVACLKSSATNTLSHDL-----CAMLNSCFDENSSMFQYNSEL--GYKDLELACLSFSGKVLVCILEQKLTSDTIGRECV------GVCNGSSGINNIFEFASRVMKFMYINMGREPAS-GLVSSRVFSTLTRFISCLHSKQDILSFFEIISGLLLQWLS-----HLEIKDENAKDQLGILWAESLNCLQRSQPPLTFDSSFLKLQASLLEKTLDHPNTSVSDPT 3347
            D++  Y+ LLH Q   + D   +      S   L+  ++ D  + DE +AA ALKCLGF +YHP LV+T+     + +L +L +LI  T+MK++CNLGVWCIS+QQ +A +L     +LL A+VHA+DNP  SLSTTFEA QA+ KL  Q  E MRE S +W PPIYRRLLS DK ERDM+ERCLL++ S +LPP   LSKA+  D+   LL+ M +  +D   KVQ V++WGW+I  LG  A+ NR L+N +LKV EQ F D + QVQI+++VAW+ L++A   P      +  + + + SP +S     N   K+++L M PL  I+S   ++++  SCL+TW +LL+KL   IN   V+     P+ + IF IGPD K+  L++ C++L    IS K  ++ S+ ++    +N +L +++ I   G     +  I+WLPWDLS  DF+L+++  I           E   +V D+A +IFR +++GVQ++++  + +YDN + C+  +  F+K    L    +S+    L       ++  +EEL+  ++ S  Y + LDI ++  +   + S  P+  C      S+MD+ SP +Y+  L L +V +    T E+             V+   +  ++F A V  +Y          +  +++ +W  +   L      M  L       + +  Y+  C    YPF  F    K  TL  A +       L+ + ++E  IEV+KS+       C  S+     +H +     C  ++S  DEN SMFQ N E     K   +A LS  G+++  +LE     +   +E         V    S + +  +  SR M    + +   P S   + SRVFS+L+ F   L  K+DIL FFEII   L +WL      + E+      DQL  LW + + CL+ S+  L  DSSFL+ Q  LL+  L+H +  +S  T
Sbjct:    4 DRAAAYARLLHLQRDCADDPSAAADLAAASPSVLLPILLRDAADRDEAVAASALKCLGFTLYHPVLVSTVSGQMAQLLLHTLIQLILTTQMKAICNLGVWCISVQQLEAVILDDTATSLLTAIVHAIDNPFCSLSTTFEAAQAIIKLTCQNPERMRELSSIWVPPIYRRLLSTDKGERDMAERCLLRVSSVVLPPQSPLSKAVASDLEHSLLSRMLNMLNDPVKKVQAVKSWGWYISLLGLHAVDNRPLLNKILKVPEQMFIDPDTQVQISTVVAWRNLVNAFFPPL---ASETPVPETKISPIESRADA-NAQLKNIRLIMMPLSRILSRSRNIALSSSCLSTWHHLLYKLGDLINHLPVLEAAFGPILKIIFSIGPDIKNKPLYSFCVNLFHGFISAKVQNMTSNEENLPIPLNKNLLSQSCIYLKGLMDGQR--IRWLPWDLSCFDFHLEILGSIANPELLHNMTLEIVVTVMDSATQIFRLLVQGVQLDWK-ANCSYDNALKCIAKVCKFVKVFMDLVGKQNSNNCSVLLQFGFQFVKVILEELDHCLLSSGTYLIGLDIEHIKEMQYAECS--PNLSCLGIKSQSYMDMVSPAIYMIALTLSVVAEF---TGELS---HGDAEQLAMVICLANFQDNFHAVVSIMYKQIMHLTDNRLRVRWLMVWNKIAKHLGE--QTMPHLKFICGISAQDVLYQFFC----YPFFAFLMHGKKSTLCDAESSSVSYLSLTHDLEVEVTIEVFKSI-------CANSNHGPEAAHKVFLERFCGFVSSIIDENISMFQANLEYCSDKKFKNIAFLSALGELVSGLLESGHILNHANKELTETSEEPAVSGQPSLVLSCLKLISRFMGLSTVVVKANPNSQHQIMSRVFSSLSTFAGHLLLKEDILLFFEIIGEQLTEWLFLSSTLYGEMLQGEIIDQLERLWFKIITCLKMSK--LINDSSFLQKQLVLLQAALNHSHRPISVAT 954          
BLAST of g.barbadense_cottongen_reftransV1_0097326 vs. ExPASy TrEMBL
Match: A0A0D3GDD4_9ORYZ (Uncharacterized protein OS=Oryza barthii PE=4 SV=1)

HSP 1 Score: 446.432 bits (1147), Expect = 2.929e-133
Identity = 333/1038 (32.08%), Postives = 527/1038 (50.77%), Query Frame = -1
Query:  432 SKTDQSLGYSTLLHFQEQSCDSPPSIQALIQSSRCLINSIVS-DIHNEDEEIAAQALKCLGFMIYHPSLVATIPAGDGKRVLESLAKLITFTKMKSVCNLGVWCISMQQFDATLLAACFDTLLQAVVHALDNPIGSLSTTFEAMQAVAKLVAQMSEMMRESSHLWAPPIYRRLLSIDKRERDMSERCLLKIRSTILPPPISLSKAIIEDMREKLLTGMKDW-SDKGMKVQTVQAWGWFICFLGSGALKNRHLVNDMLKVLEQTFSDHNPQVQIASLVAWQGLIDALVHPQILSCKKNGIQQLQTSPGKSSELVLNGFSKSLKLAMAPLIGIISSKCDVSVLLSCLNTWCYLLHKLDTFINSPSVINVVLDPMFQAIFKIGPDSKSIRLWNLCLDLLEDSISTKCSD-----------LNSDPKDQVNLHLSARTFISGSGRYSWNQYPIKWLPWDLSQLDFYLKMXXXXXXXXXXXXXAPESKKSVCDAAVRIFRSVLKGVQMEFRNPSNNYDNIMFCLNTILSFMKKLGEDASSDGGGD----LFNTSLYLIEAAVEELEPSIMESPLYKVALDISYVGSLDSVKHSKIPHRCSF--MDIFSPMXXXXXXXXXXXXXXTINTPEMELILQRLQRFYKFV--LSSDDP------------LESFLASVGFLYAH--------MGFKYMEIWMVMVTCLNGYIDGMKDLSLFRTDSDNSFYRAICHLLSYPFILFSCAKKDITLSKASNPLKESFVLS-ERKLEQVIEVWKSLFGSVCVACLKSSATNTLSHDL-----CAMLNSCFDENSSMFQ----YNSELGYKDLELACLSFSGKVLVCILEQKLTSDTIGRECVGVCNGSSGINN------IFEFASRVMKFMYINMGREPAS-GLVSSRVFSTLTRFISCLHSKQDILSFFEIISGLLLQWLS-----HLEIKDENAKDQLGILWAESLNCLQRSQPPLTFDSSFLKLQASLLEKTLDHPNTSVSDPTIIFWNSTYGKQISLDYPQNLLHVLHKLSRNGRISL 3356
            ++ D++  Y+ LLH Q    D P +   L  +S  ++  ++  D  + DE +AA ALKCLGF +YHP LV+T+     + VL++L +LI  T+MK++CNLGVWCIS+Q+ +A ++     +LL A+VHA+DNP  SLSTTFEA QA+ KL +Q  E MRE S +W PPIYRRLLS+DK ERDM+ERCL+K+ S +LPP   LSKAI  D+   LL+ M +   D   KVQ V++WGW+I  LG   + NRHL+N +LKV EQ F D + QVQIA++VAW+ L++A + PQ     +  + + + SP +S     N   K ++L M PL  I+S    +++  SCL+TW +LL+KL   IN   ++     P+ + +F IGPD ++  L++ C++L  + ISTK  D           LN +   Q  +HL  +T + G          I+WLPWD++  DF+L ++  I+          ES  +V D+A  IFR +++GVQ++ +    N  N   C+  +  F+KK+  D       +    L   +   ++  +EEL+  ++ S +  + LDI ++  ++   ++    + S+  M  +S M  +              +PE+ +I+  L    +F   LS  D              ++F A+V F+Y          +  +++ +W  +   LNG I      +L +   D   +  +     YPF  F    +  TL  + +  +    L+ + ++E  IEV++S+       C  S+      H +     C  + S  DEN S+FQ    Y SE  +K+   A LS  G+++  +LE     +   +E       S+G +            SR M    I +   P +   + SRVFS+L+ F   L  K+D+L FFEII   L + LS     + E++     +Q+  LW + + CL+ S+  L  D SFL+ Q  LL+  + HP+  +S  T   W ++     +L +    L  L KL    R  L
Sbjct:   19 AEPDRASAYARLLHLQRACADDPSAAADLAAASPSILLPLLLRDAGDRDEAVAASALKCLGFTLYHPVLVSTVSGQMAQSVLDTLIQLIMTTQMKAICNLGVWCISVQELEAVVVDHRATSLLTAIVHAIDNPFCSLSTTFEAAQAIMKLTSQNPEKMRELSSIWVPPIYRRLLSVDKAERDMAERCLIKVSSVVLPPQSLLSKAIASDLEHSLLSCMLNMIHDPVKKVQAVKSWGWYISLLGLHVVDNRHLLNKILKVPEQLFIDSDTQVQIATMVAWRNLVNAFL-PQ---ASETLVPKTKISPIESRADT-NAQLKKIRLIMMPLGRILSRSHSIALSSSCLSTWHHLLYKLGDLINQLPILEAAFGPVLKIVFSIGPDIQNKPLYSFCVNLFHEYISTKVRDMASHGEYLPIPLNQNLLSQSCIHL--KTLMDGQC--------IRWLPWDVTCFDFHLDILVSIVNPELLRKMTLESVMTVMDSATHIFRLLVQGVQVDCKAKCAN-GNAQICVAKVCKFVKKVFMDLVGKQNNNNCSVLLQYAFQFVKVILEELDHCLLASGICVIGLDIEHIKEME---YADCSPKLSYPGMKSYSYMEMV--------------SPEVYMIVLSLSIVAEFTGELSHGDAEQLAIIICLSNFQDNFHAAVSFMYKQIMLLTDNRLRMRWLMVWNKIAKRLNGQITP----NLKKIICDAGVHDVLYQFFCYPFFAFLLPGRKSTLCGSESSSESYLSLTHDLEVEVAIEVYRSI-------CANSNHGPEADHKVFLESFCGFVVSIIDENISLFQANIEYCSEKKFKN--CAILSTLGELVSGLLENGHILNYAIKEPTEASEESAGYSQPSILLCCLRLVSRFMGLSTIVIKANPTTQHQIMSRVFSSLSAFAGYLLLKKDVLLFFEIIGEQLTECLSLSGTLYREMQHGETINQIEKLWLKIIMCLKTSK--LINDCSFLQKQQMLLQAAVSHPHRPISVATTPAWRASRSDISTLQHSSFSLSKLDKLPMERRKDL 1008          
The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0097326 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 2
Match NameE-valueIdentityDescription
RIF1_MOUSE2.121e-1423.99Telomere-associated protein RIF1 OS=Mus musculus G... [more]
RIF1_HUMAN3.552e-1122.69Telomere-associated protein RIF1 OS=Homo sapiens G... [more]
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BLAST of g.barbadense_cottongen_reftransV1_0097326 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A059CNX0_EUCGR0.000e+046.27Uncharacterized protein OS=Eucalyptus grandis GN=E... [more]
U5D6C2_AMBTC0.000e+039.11Uncharacterized protein OS=Amborella trichopoda GN... [more]
K3XUX9_SETIT2.103e-13633.10Uncharacterized protein OS=Setaria italica GN=Si00... [more]
J3MBQ2_ORYBR9.271e-13533.84Uncharacterized protein OS=Oryza brachyantha GN=OB... [more]
A0A0D3GDD4_9ORYZ2.929e-13332.08Uncharacterized protein OS=Oryza barthii PE=4 SV=1[more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 228..390
e-value: 1.4E-6
score: 26.8
coord: 56..182
e-value: 1.4E-6
score: 26.8
IPR022031Telomere-associated protein Rif1, N-terminalPFAMPF12231Rif1_Ncoord: 29..376
e-value: 8.8E-36
score: 123.5
IPR028566Telomere-associated protein Rif1PANTHERPTHR22928TELOMERE-ASSOCIATED PROTEIN RIF1coord: 733..1116
coord: 1..309
coord: 332..716
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 603..623
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 624..1121
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..602
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 9..423
coord: 858..884
coord: 516..558

Sequences
The following sequences are available for this feature:

contig sequence

>g.barbadense_cottongen_reftransV1_0097326 ID=g.barbadense_cottongen_reftransV1_0097326; Name=g.barbadense_cottongen_reftransV1_0097326; organism=Gossypium barbadense; type=contig; length=3518bp
GGCCGATTTCCCCTCCTTTACAATCAGTTTCGCAACAGCACCCGCTGCTC
TAGCTAATTGTCTCTTCTCAACATCTCCAACATGGCTTCCGAATCTCGAA
TGTCCTGACTGTCTTGCAACTCTTGGTTTCCCTGCGAAAAGTCGAGACTT
GTATAAGTTCGGACCCCAGGACCGTGTCCATTGCAGTCCCTCTCCCTTCC
TTGCTGCGCTCGTCTTACTTCCTTTTGATGCTCCGTTAGTTCCACTCTCT
TTCGTTTTGAATTCGATGGTGGCTTATTGTTCTGGTTAGATCCGGGAATC
ATACCCTCCTCTGTTAACTCGACTCTTTTAGAGCTCTTCTGTGTTGCGGT
GATCTTGCAATACCGTGGGGTGGTGACTGTGTCATTTTCTAGCGTGGAGC
ATCTTGCCACAAATGATTTGCTTCTATTGTAGAGGCTTATTCTTCCATTT
CTTGACAACTTGTGTAGAACATGAAGTAGATTTTGGGGGTAATCCAAGCT
GATTTGCTTGCCATATGTGGAGTTCCAAAAGATTATGGTCGGATCAGAAA
CGGAGGTATTCGGATGATCCAGAGTTTTCTCGAGGAGGGATGCTTGAAGT
TTGAGGAAAGAAGAATCGAAAGTTAGCGGTGGCTGACTCCTCTGTAAACA
ATTGAGGCTCTCAGCCCATAGGATTCCGAGTTGATCTTTGGCATTTTCAT
CCTTTATCTCTAGATGTGATAACCATTGAAGCAGCAGACCGGATATTATC
TCGAAAAATGAAAGAATATCTTGCTTTGAGTGAAGGCAACTAATGAAGCG
TGTCAACGTAGAGAATACCCTTGAACTCACAAGACCAGAGGCTGGTTCCC
TTCCCATGTTTATGTACATGAATTTCATGACTCTGGAAGCAAATTCGAAA
ATATTATTAATGCCACTGGATCCATTGCAGACGCCAACACATTCTCTGCC
GATCGTATCTGAAGTCAGTTTCTGTTCCAAAATACATACCAAAACCTTGC
CAGAGAAAGAAAGGCAAGCAAGCTCCAGATCCTTGTAACCAAGCTCACTA
TTATACTGAAACATGCTACTGTTTTCATCGAAACATGAATTTAACATTGC
ACACAGATCATGACTGAGAGTGTTTGTAGCAGAAGACTTCAAGCATGCAA
CACAAACAGAACCAAATAAGGACTTCCAAACCTCAATAACCTGTTCAAGT
TTTCTCTCTGATAAAACAAAAGATTCTTTCAGGGGATTGCTAGCTTTCGA
CAGGGTTATATCTTTCTTAGCACAAGAGAACAAAATGAATGGATATGATA
AGAGATGGCATATGGCCCTATAAAACGAATTGTCAGAATCTGTTCTGAAT
AGAGAGAGATCCTTCATACCATCAATATAGCCATTCAGACATGTCACCAT
CACCATCCATATCTCCATGTACTTAAAACCCATGTGCGCATACAAAAAAC
CAACAGAAGCAAGAAAACTTTCCAGGGGATCATCAGAAGACAGTACAAAT
TTATAAAATCTTTGAAGCCTCTGTAAAATCAATTCCATCTCAGGTGTATT
TATAGTTAATTGAACCACCAAACCAAGGTAGAGTACAGTTAGATAGACCA
TAGGTGAAAATATATCCATAAAAGAACATCGATGCGGTATTTTTGAATGT
TTAACTGAATCCAGACTGCCAACATAACTGATGTCTAAAGCCACCTTGTA
AAGAGGGGATTCCATAATAGACGGTTCTAACTCCTCCACAGCGGCCTCTA
TTAAATAAAGGGAAGTATTAAATAAGTCACCACCACCATCTGAACTAGCA
TCTTCGCCTAATTTCTTCATGAAACTTAATATTGTGTTCAAACAGAACAT
TATGTTATCATAATTATTTGATGGATTTCTAAACTCCATTTGCACACCCT
TTAAAACAGATCTAAATATCCTGACAGCTGCATCACACACTGATTTTTTA
CTTTCAGGGGCAGCTGTTGCTGTTGCCACATGAGTAATGATAATACTAAT
CATCTTTAAGTAGAAATCCAACTGACTAAGATCCCAAGGCAACCATTTAA
TAGGATATTGATTCCATGAATACCTGCCCGACCCAGAAATGAAGGTTCTA
GCAGAAAGATGAAGGTTTACCTGGTCCTTTGGATCAGAGTTCAAATCTGA
ACACTTTGTTGATATAGAATCTTCAAGCAAATCAAGGCACAAATTCCATA
ACCGAATACTTTTACTATCAGGTCCTATCTTAAAAATTGCTTGAAACATA
GGATCCAGTACCACGTTAATTACTGACGGAGAGTTGATGAAGGTATCAAG
TTTATGTAGAAGATAACACCATGTGTTTAGGCAGGACAAGAGAACAGAAA
CGTCACATTTACTTGAAATGATTCCTATTAGAGGTGCCATAGCGAGCTTT
AAGCTTTTTGAAAATCCATTTAACACCAATTCACTACTTTTTCCTGGTGA
CGTTTGCAACTGTTGAATTCCATTCTTCTTGCAAGACAGTATTTGAGGAT
GAACCAGGGCATCAATAAGACCTTGCCAAGCAACCAGAGAAGCAATCTGG
ACTTGTGGGTTGTGATCTGAAAATGTTTGCTCAAGAACTTTCAACATATC
GTTCACCAGATGTCTGTTCTTCAAGGCACCAGATCCTAGGAAGCAGATGA
ACCACCCCCACGCCTGGACAGTTTGAACCTTCATACCCTTGTCTGACCAG
TCCTTCATCCCTGTCAGCAATTTTTCCCTCATGTCTTCAATAATAGCCTT
GGAAAGACTTATTGGAGGAGGAAGTATTGTAGACCTAATTTTCAAAAGAC
ACCTCTCAGACATATCCCGCTCTCTCTTATCAATGCTGAGAAGTCTTCTA
TATATAGGAGGAGCCCATAAGTGCGATGATTCTCGCATCATTTCACTCAT
TTGGGCCACTAGCTTTGCCACAGCCTGCATGGCCTCGAACGTTGTTGACA
ATGAACCAATAGGATTGTCAAGGGCATGAACAACCGCCTGCAACAATGTA
TCAAAGCAGGCAGCTAAAAGTGTCGCATCGAATTGTTGCATCGATATACA
CCACACGCCTAAATTGCAAACTGACTTCATTTTTGTAAACGTGATGAGTT
TAGCCAATGACTCTAAAACTCGTTTACCATCTCCAGCAGGAATTGTAGCA
ACGAGAGAAGGGTGATAGATCATAAATCCCAAGCACTTCAAAGCTTGAGC
AGCTATTTCTTCGTCTTCATTGTGGATATCGGAGACGATTGAATTAATAA
GACATCGAGAACTTTGAATTAGGGCTTGGATTGAAGGAGGACTGTCACAG
GACTGTTCTTGGAAGTGTAACAGAGTTGAATAACCTAACGATTGGTCTGT
TTTTGAATTAGATGATATGAGAATTTTGATTTCTTCCATCTGACTGCTGA
TGATACTCGACATTGTCAAAACGATTGTCGATTGTGAAATCGAAGGAGGT
GAGAAAAGTAAAAATAAACCCTAAAAGGTTACTATTTGGGGATTTTTACA
CTCACTTCAATTTTCGCG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR011989ARM-like
IPR022031Rif1_N
IPR028566Rif1
IPR016024ARM-type_fold
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding