g.barbadense_cottongen_reftransV1_0097326, g.barbadense_cottongen_reftransV1_0097326 (contig) Gossypium barbadense
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0097326 vs. ExPASy Swiss-Prot
Match: RIF1_MOUSE (Telomere-associated protein RIF1 OS=Mus musculus GN=Rif1 PE=1 SV=2) HSP 1 Score: 82.4185 bits (202), Expect = 2.121e-14 Identity = 83/346 (23.99%), Postives = 155/346 (44.80%), Query Frame = -1 Query: 2226 IHNEDEEIAAQALKCLGFMIYHPSLVATIPAGDGKRVLESLAKLITFTKMKSVCNLGVWCISMQQFDATLLAACFDTLLQAVVHALD-NPIGSLSTTFEAMQAVAKLVAQMSEMMRESSHLWA----PPIYRRLLSIDKRER---DMSERCLLKIRSTILPPPISLSKAIIED--MREKLLTGMKDWSDKGMKVQTVQAWGWFICFLGSGALKNRHLVNDMLKVLEQTFSDHNPQVQIASLVAWQGLIDAL-VHPQILSCKKNGIQQLQTSPGKSSELVLNGFSKSLKLAMAPLIGI-ISSKCDVSVLLSCLNTWCYLLHKLDTFINSPSVINVVLDPMFQAIFKI 3227 I +++ E+++ AL+ LGF +Y+P + + + + + +L +L +I + K+VC +W IS Q F A L++ +++ ++ L I S FEA+ + +L+ Q M E S WA P + + R +M LL+ + I A+I + M KL++ ++ + ++ W F+ LG ++ +N +L++ E F P ++ + +AW+ LID ++P IL C +K LKL M PL I + ++ ++ L+ L W YLL +L + P+ V P+ Q+ + Sbjct: 64 ISSQNSELSSAALQALGFCLYNPRITSGLSEANIQELLLTLNGIIKSSD-KNVCTRALWVISKQTFPAELVSKMVSSIIDSLEVILSKGEIHSAVVDFEALNVIIRLIEQAPVQMGEESVRWAKLVIPLVVHSAQKVHLRGATALEMGMPLLLQKQQEI---------ALITEHLMTTKLISELQKLFKNKNETYVLKLWPLFVKLLGKTLHRSGSFINSLLQLEELGFRSGTPMIKKIAFIAWKSLIDNFALNPDIL-CS----------------------AKRLKLLMQPLSSIHVRTE---TLALTKLEVWWYLLMRLGPQL--PANFEQVCVPLIQSTISV 371
BLAST of g.barbadense_cottongen_reftransV1_0097326 vs. ExPASy Swiss-Prot
Match: RIF1_HUMAN (Telomere-associated protein RIF1 OS=Homo sapiens GN=RIF1 PE=1 SV=2) HSP 1 Score: 72.0182 bits (175), Expect = 3.552e-11 Identity = 81/357 (22.69%), Postives = 155/357 (43.42%), Query Frame = -1 Query: 2187 IHNEDEEIAAQALKCLGFMIYHPSLVATIPAGDGKRVLESLAKLITFTKMKSVCNLGVWCISMQQFDATLLAACFDTLLQAVVHALD-NPIGSLSTTFEAMQAVAKLVAQMSEMMRESSHLWA----PPIYRRLLSIDKRER---DMSERCLLKIRSTILPPPISLSKAIIEDMREKLLTGMKDWSDKGMKVQTVQAWGWFICFLGSGALKNRHLVNDMLKVLEQTFSDHNPQVQIASLVAWQGLIDAL-VHPQILSCKKNGIQQLQTSPGKSSELVLNGFSKSLKLAMAPLIGI-ISSKCDVSVLLSCLNTWCYLLHKLDTFINSPSVINVVLDPMFQAIFKIGPDSKSIRLWNLC 3227 I +++ E+++ AL+ LGF +Y+P + + + + +L L I + K+V +W IS Q F + ++ +++ ++ + S FEA+ + +L+ Q M E + WA P + + R +M LL+ + I S+++ + M KL++ ++ + ++ W F+ LG ++ +N +L++ E F P ++ + +AW+ LID ++P IL C +K LKL M PL I + ++ ++ L+ L W YLL +L + P+ V P+ Q+ I DS + N C Sbjct: 64 ISSQNSELSSAALQALGFCLYNPKITSELSEANALELLSKLNDTIKNSD-KNVRTRALWVISKQTFPSEVVGKMVSSIIDSLEILFNKGETHSAVVDFEALNVIVRLIEQAPIQMGEEAVRWAKLVIPLVVHSAQKVHLRGATALEMGMPLLLQKQQEI----ASITEQL---MTTKLISELQKLFMSKNETYVLKLWPLFVKLLGRTLHRSGSFINSLLQLEELGFRSGAPMIKKIAFIAWKSLIDNFALNPDIL-CS----------------------AKRLKLLMQPLSSIHVRTE---TLALTKLEVWWYLLMRLGPHL--PANFEQVCVPLIQSTISI--DSNASPQGNSC 382
BLAST of g.barbadense_cottongen_reftransV1_0097326 vs. ExPASy TrEMBL
Match: A0A059CNX0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C01385 PE=4 SV=1) HSP 1 Score: 684.871 bits (1766), Expect = 0.000e+0 Identity = 397/858 (46.27%), Postives = 549/858 (63.99%), Query Frame = -1 Query: 882 LISSNSKTDQSLGYSTLLHFQEQSCDSPPSIQALIQSSRCLINSIVSDIHNEDEEIAAQALKCLGFMIYHPSLVATIP------AGDGKRVL--ESLAKLITFTKMKSVCNLGVWCISMQQFDATLLAACFDTLLQAVVHALDNPIGSLSTTFEAMQAVAKLVAQMSEMMRESSHLWAPPIYRRLLSIDKRERDMSERCLLKIRSTILPPPISLSKAIIEDMREKLLTGMKDWSDKGMKVQTVQAWGWFICFLGSGALKNRHLVNDMLKVLEQTFSDHNPQVQIASLVAWQGLIDAL-VHPQIL-SCKKNGIQQLQTSPGKSSELVLNGFSKSLKLAMAPLIGIISSKCDVSVLLSCLNTWCYLLHKLDTFINSPSVINVVLDPMFQAIFKIGPDSKSIRLW--NLCLDLLEDSISTKCSDLNSDPKDQVNLHLSARTFISG---SGRYSWNQYPIKWLPWDLSQLDFYLKMXXXXXXXXXXXXXAPESKKSV-CDAAVRIFRSVLKGVQMEFRNPSNNYDNIMFCLNTILSFMKKLGEDASSDGGGDL-----FNTSLYLIEAAVEELEPSIMESPLYKVALDISYVGSLDSVKHSKIP---HRCSFMDIFSPMXXXXXXXXXXXXXXTINTPEMELILQRLQRFYKFVLSSDDPLESFLASVGFLYAHMGFKYMEIWMVMVTCLNGYIDGMKDLSLFRTDSDNSFYRAICHLLSYPFILFSCAKKDITLSKASNPLKESFVLSERKLE--QVIEVWKSLFGSVCVACLKSSATNTLSHDLCAMLNSCFDENSSMFQYNSELGYK--DLELACLSFSGKVLVCILEQKLTSDTIGRECVGVCNGSSGINNIFEFASR 3371 L S ++ +SL YS LL QE+S P +I+AL SR L++ +V D+ +EDEEIA QA+KCLGFMI+HP+++A+IP + R+L +S +F M+SVCNLG+WCISMQQFD +LL A F +LL+A+VHALDNP GSLSTTFEA+QAV K+ +Q+ EMMR SSH+W PP+YRRLLS DKRERDM+ERCLLKI+S +LPPP +LSK + DM+E+LL MKD ++G KVQTV+AWGWFI LG AL+ R L+NDMLK+ E TFSD + +VQIAS V +I +L V Q + K+ +Q+ S + + + +GF KS+KL M PLIGI SSK D+SV SC NTWCYLLHKLD ++N P V N+VLDP+F+A F GP +R W NLCLDLL+DSIS K D DQV ++S +T G SGR+SWNQYPIKWLPWD QLDFY+++I I + A +S+ CDAA+R+FRSVLK VQMEFR+PS NYD+IM+ L IL F+KK+ EDA+ G GD ++TS I+A E+L+PSI+ SPLYK+ LD+ YV + +SV + P ++MD+ SP+ ++ +V+Q ++ + E ++ + VLSSDDP E+ LY H F +E+W + L +++ D SL + + + I HLLSYPF ++S K+ I + A++ E V + RK E +IE W SL+G V ++ A NT LC++LN C N+SM ++ ++LG + + +SF G +L I+EQ L S+ V + ++G +++ FA++ Sbjct: 15 LASPDAGAGKSLAYSALLRLQERSVSDPDAIRALAGRSRSLVSLLVGDVRDEDEEIAVQAMKCLGFMIHHPAILASIPGRLCCNSHIYNRILPSQSFKSNFSFIGMQSVCNLGMWCISMQQFDGSLLNAHFQSLLKAIVHALDNPFGSLSTTFEAIQAVMKIASQLGEMMRASSHIWIPPLYRRLLSTDKRERDMTERCLLKIKSIMLPPPPTLSKVLALDMKERLLVSMKDMLEQGFKVQTVRAWGWFIRLLGDRALRKRCLLNDMLKIPELTFSDQDVRVQIASQVLPTTVIHSLDVQAQRSNTTKEKQMQRTNKSRFDTDDSLSSGFLKSIKLIMTPLIGIFSSKSDLSVHSSCFNTWCYLLHKLDIYVNHPLVRNLVLDPVFEAAFHSGP--LIMRTWFCNLCLDLLDDSISAKLGIDEKDSDDQVGQNMS-KTPNQGNLISGRFSWNQYPIKWLPWDPCQLDFYIQVIQTICEVSIASVAQSNEDRSLTCDAALRMFRSVLKLVQMEFRSPSTNYDDIMWILKQILMFVKKICEDANL-GCGDRKGTRSYHTSFLFIQAIFEQLQPSILGSPLYKIPLDLKYVENWESVDDFRRPLDMRDITYMDMVSPV-VYLIVLYHVVIQSHLDKSKAEATPWGSCKYMEIVLSSDDPSENLALINALLYKHANFSCLELWSAVAGGLKDHMNAANDPSLVQKAFN---FSTIIHLLSYPFYVYSHQKEKIVDTNAADSSGEYHVSALRKPEVSHLIEEWISLYGFVSTMDIQLPAPNTFHGLLCSILNDCLQGNTSMLEHGNDLGSSSDNPVIDFISFYGNLLTYIVEQNLKSE------VRIDGITAGSDSVLHFAAK 858
BLAST of g.barbadense_cottongen_reftransV1_0097326 vs. ExPASy TrEMBL
Match: U5D6C2_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00046p00132680 PE=4 SV=1) HSP 1 Score: 630.172 bits (1624), Expect = 0.000e+0 Identity = 402/1028 (39.11%), Postives = 592/1028 (57.59%), Query Frame = -1 Query: 195 GKRVLESLAKLITFTKMKSVCNLGVWCISMQQFDATLLAACFDTLLQAVVHALDNPIGSLSTTFEAMQAVAKLVAQMSEMMRESSHLWAPPIYRRLLSIDKRERDMSERCLLKIRSTILPPPISLSKAIIEDMREKLLTGMKDWSDKGM-KVQTVQAWGWFICFLGSGALKNRHLVNDMLKVLEQTFSDHNPQVQIASLVAWQGLIDALVHPQILSCKKNGIQQLQTSPGKSSELVLNGFS--------KSLKLAMAPLIGIISSKCDVSVLLSCLNTWCYLLHKLDTFINSPSVINVVLDPMFQAIFKIGPDSKSIRLWNLCLDLLEDSISTKCSDLNSDPKDQVNLHL----SARTFISGSGRYSWNQYPIKWLPWDLSQLDFYLKMXXXXXXXXXXXXXAPESKKSVCDAAVRIFRSVLKGVQMEFRNPSNNYDNIMFCLNTILSFMKKLGEDASSD----GGGDLFNTSLYLIEAAVEELEPSIMESPLYKVALDISYVGSLDSVKHSKIPHR-------CSFMDIFSPMXXXXXXXXXXXXXXTINTPEMELILQRLQRFYKFVLSSDDPLESFLASVGFLYAHM--GFKY--MEIWMVMVTCLNGYIDGMKDLSLFRTDSDNSFYRAICHLLSYPFILFSCAKKDITLSKASNPLKESFVLSERKLE--QVIEVWKSLFGSV-CVACLKSSATNTLSHDLCAMLNSCFDENSSMFQYNSELGYK-DLELAC--LSFSGKVLVCILEQKLTSDTIG------RECVGVCNGSSGINNIFEFASRVMKFMYINMGREPASGL-VSSRVFSTLTRFISCLHSKQDILSFFEIISGLLLQWLSHLEIKDE-----NAKDQLGILWAESLNCLQRSQPPLTFDSSFLKLQASLLEKTLDHPNTSVSDPTIIFWNSTYGKQISLDYPQNLLHVLHKLS---RNGRISLYNRSKSFVARCSTLENDTVTTPRYCKITATQK-SSKRVELTEEGMIPGSNQXXXXXXXXXXXRVELTEHQKEVRRAQQGR 3128 + ++ESL KLI TKMK++CNL VWCIS+QQF ++ LA+ +TLL+AVV+A+DNP GSLSTTFEA+Q KL QM + MRESSH+WAP I RRL S++KR+RDM+ERCL KI+S ILPPP+ LSKAI D++ + L+ M+ + KV +QAWGW I LGS L+ RHL+N+MLK+ E+TFS +PQVQIAS VAW+ LID L+ + + N I + G +G K +KL M PL+G++SS CD+ V L+ LN W Y+LHKLD F+N PS+ VVL+P+F+A+F++GPD ++I +W+ CLDL ++ +S+K PK QV ++ S S + SW+ +PIKWLPWDL++L+FYL M+ II + A E K DA++RIF+S+L+ V++E + S +D I+ ++ +LSF K + + + D L IE + ELE +++SPLYKV LDI + L + ++ ++ +MD+ SPMVY+ VLY +V E + I+ RLQ+F + + S +PL+ +G LY +M F++ ++W V+ LN ID +K L R+DSDN+ Y + + L P L+ +K + + ++S + SE LE +EVW+SL+ S V+ ++ S+ N + +C L + + Q +++ K +L C L G++++ +L+Q L ++ + + SS I N EF +R ++ + + P L V R F+++T F+S L K+DIL F EIIS L QWLS I ++ + + QL I W E+L+CL+RS+PPL F+SS L LQA LL L+HP++++SD TI FW +TYGK + YP L +L L N ++ N + S +C + TQK SSKRV + P + + SKRK ELTEHQ EVRRAQQGR Sbjct: 38 AQDIIESLEKLIMTTKMKAICNLAVWCISVQQFSSSFLASHQETLLKAVVYAIDNPFGSLSTTFEAIQGAVKLATQMGKTMRESSHVWAPCICRRLFSLNKRDRDMAERCLQKIKSIILPPPLRLSKAIALDIKHRFLSDMEKMLQLPLCKVHVIQAWGWLIRLLGSHVLRKRHLLNEMLKIPEKTFSCPDPQVQIASQVAWEALIDILLQQPVKANGTNVIHVPSSHEGLRPSHASSGNYDAERDVPLKRIKLLMTPLVGVLSSACDIPVRLASLNMWHYILHKLDVFVNHPSIQEVVLEPIFKAVFQMGPDDRNIFIWSRCLDLFDELVSSKIDKGFDAPKKQVVAYIWPPDSGSYEPCLSAKMSWHDHPIKWLPWDLNRLNFYLNMVQIIRRYCLGKGMADEYVKRGLDASLRIFKSLLQRVKIELKGTSRPFDEIVLIIHELLSFTKDIYATVTLEHPIISVTDWQCNVLQFIEVVIAELEHDVLKSPLYKVPLDIQEIQKLQCPQDTERANQNMSGSGFLVYMDLVSPMVYIIVLYFVVVAHSLSALEENQFIMNRLQKFSEMICSICEPLDELNHFIGMLYLYMQNDFRWGLFKMWRVLARGLNDRIDSVKYLHFLRSDSDNTGYAIVYYSLCCPLELYISLEK-MNMKESSGYMNFHVSPSELSLELDLTLEVWRSLYYSANHVSNIEGSSINRFAEGMCRRLTELVSKRYIVSQSETQIRLKEELNGRCSFLFLIGELVIYVLKQTLVLNSQNLILKNRNQEESKKSDSSNIRNYLEFVARYLRLLLTIVNTLPEVELDVILRTFASMTIFVSHLCLKKDILLFMEIISDPLAQWLSLCSILNQETNRGDLQHQLSIFWTETLDCLRRSKPPLLFNSSLLTLQAPLLGIALNHPHSAISDATISFWQATYGKNTKISYPHYLFPILVNLKIVDANAPLACDNPAISADTKC-------------VGVNVTQKGSSKRV------VAPMQDCDALFVGPSKRKCSELTEHQMEVRRAQQGR 1045
BLAST of g.barbadense_cottongen_reftransV1_0097326 vs. ExPASy TrEMBL
Match: K3XUX9_SETIT (Uncharacterized protein OS=Setaria italica GN=Si005736m.g PE=4 SV=1) HSP 1 Score: 454.521 bits (1168), Expect = 2.103e-136 Identity = 327/988 (33.10%), Postives = 506/988 (51.21%), Query Frame = -1 Query: 495 SKTDQSLGYSTLLHFQEQSCDSPPSIQALI-QSSRCLINSIVSDIHNEDEEIAAQALKCLGFMIYHPSLVATIPAGDGKRVLESLAKLITFTKMKSVCNLGVWCISMQQFDATLLAACFDTLLQAVVHALDNPIGSLSTTFEAMQAVAKLVAQMSEMMRESSHLWAPPIYRRLLSIDKRERDMSERCLLKIRSTILPPPISLSKAIIEDMREKLLTGMKDW-SDKGMKVQTVQAWGWFICFLGSGALKNRHLVNDMLKVLEQTFSDHNPQVQIASLVAWQGLIDALVHPQILSCKKNG--IQQLQTSPGKSSELVLNGFSKSLKLAMAPLIGIISSKCDVSVLLSCLNTWCYLLHKLDTFINSPSVINVVLDPMFQAIFKIGPDSKSIRLWNLCLDLLEDSISTKCSDLNSDPKDQVNLHLSARTFISGSGRYSWNQYPIKWLPWDLSQLDFYLKMXXXXXXXXXXXXXAPESKKSVCDAAVRIFRSVLKGVQMEFRNPSNNYDNIMFCLNTILSFMK-KLGEDASSDGGGD----LFNTSLYLIEAAVEELEPSIMESPLYKVALDISYVGSLDSVKHSKIPHRCSFMDI--FSPMXXXXXXXXXXXXXXTINTPEMELILQRLQRFYKFVLSSDDPLESFLASVGFLYAHM--------GFKYMEIWMVMVTCLNGYIDGMKDLSL--FRTDSDNSFYRAICHLLSYPFILFSCAKKDITLSKASNPLKESFVLSERKLEQVIEVWKSLFGSVCVACLKSSATNTLSHDLCAMLNSCFDENSSMFQYNSELGYKDLE-LACLSFSGKVLVCILEQKLTSDTIGRECVGV---CNGSSGIN---NIFEFASRVMKFMYINMGREPAS-GLVSSRVFSTLTRFISCLHSKQDILSFFEIISGLLLQWLS-----HLEIKDENAKDQLGILWAESLNCLQRSQPPLTFDSSFLKLQASLLEKTLDHPNTSVSDPTIIFWNSTYGKQISL 3356 ++ D++ Y+ LLH Q S D P + L + L+ ++ D + DE +AA ALKCLGF +YHP+LV+T+ A + VL++L +LI T+MKSVCNLG+WCIS+QQ + ++ D ++ A+V+ALDNP GSLSTTFEA QA+ KL Q + MR+ S LW PPIY+RLLS DK ERDM+ERCL+K+ ILPP LSKA+ D+ KLL+ M + D KVQ V++WGW I FLG A+ NR L+N +LKV EQ F D + QVQIA++V+W+ L+DA Q + + I L+ S+++ K +L M PL ++S ++ + SCL+TW YLLH+L IN ++ P+ + IF +G + ++ LW+ C++L D +K S D VN +L A++ + + IKWLPWD+ F L ++ I+ PE V D+A IF+ +L GVQ+E + +Y+ + C+ + F+K KL D G+ L L +E V EL+ S++ S ++ LDI ++ +++++ + SF I S M ++ + LT+ ++ +LSS D L+SF V F+Y + K++ +W N + + D+++ + +S Y + YPF F +++ + + V+ + ++E IEV++SL S +C +A L + DE++++FQ N E + E A LS G+V++ +LE +E GS +N + A+R MKF PA V+SR FS+L+ F+ + K+DIL FEII L +WLS + E++ QL LW + L CL SQ L D + Q LL+ L HP+ ++S T + +ISL Sbjct: 15 AEPDRAAAYACLLHLQRGSADDPSAAADLAAELPSPLLPLLLRDAADPDEAVAASALKCLGFALYHPALVSTVSAQMSQAVLDTLVQLIMNTRMKSVCNLGIWCISVQQLEPLIIDDRADLIVAAIVYALDNPFGSLSTTFEAAQAIMKLACQSHKRMRDLSSLWVPPIYQRLLSADKPERDMAERCLIKVSHVILPPQPLLSKAVALDLERKLLSHMMNMLDDASKKVQVVKSWGWIISFLGPDAVNNRPLLNKLLKVPEQMFIDLDTQVQIATMVSWRNLVDAFFPSQATESESHETVIAPLEPREHASAQV------KRTRLIMVPLCRVLSRSRNIVLSSSCLSTWNYLLHRLGNLINCLPILEAAFAPILKIIFSVGINDQNKPLWSFCMNLFHDFSKSK-SRHREDLCTPVNWNLVAQSCMHLKALLDFQH--IKWLPWDIGCFHFQLDILGTILNPELFQDMIPEKMLIVMDSATEIFKFLLGGVQIELKEKC-SYEQVRLCITDVCKFVKTKLFLDHVGKHSGNKCAMLLEFGLQFVEVIVGELDHSLLNSEKIEICLDIEHI---KEIQYAECTRKFSFPGIRPLSYMEMVSPAVYMTALSLTMVAQYTGVLSHGDAEKLALILSSSDILKSFHVVVAFMYMQIMCPIFNRQRLKWLMVW-------NKFAKQLNDITISYLKASPGSSSYDVLHQFFCYPFFSF-LYPGGLSIPWNAENSSCAPVMQDLEVELAIEVYRSLCTS---SCNSKAAPKVFFEGFYDYLVNIIDEHTALFQANLEHCPEKFENTAILSALGEVVIGLLENDQILAYANQELNEANEDFTGSRHLNLFLSCLNLANRFMKFSRFGFKANPAGQHQVTSRFFSSLSNFVRHVVLKKDILLLFEIIGDQLTEWLSLSATLYCEMQQGKIIYQLEKLWLKILKCLNMSQ--LISDGPLSQKQ-QLLQVALSHPHDAISVATASACRAEANIKISL 975
BLAST of g.barbadense_cottongen_reftransV1_0097326 vs. ExPASy TrEMBL
Match: J3MBQ2_ORYBR (Uncharacterized protein OS=Oryza brachyantha GN=OB06G14460 PE=4 SV=1) HSP 1 Score: 446.432 bits (1147), Expect = 9.271e-135 Identity = 332/981 (33.84%), Postives = 513/981 (52.29%), Query Frame = -1 Query: 537 DQSLGYSTLLHFQEQ-SCDSPPSIQALIQSSRCLINSIVSDIHNEDEEIAAQALKCLGFMIYHPSLVATIPAGDGKRVLESLAKLITFTKMKSVCNLGVWCISMQQFDATLLAACFDTLLQAVVHALDNPIGSLSTTFEAMQAVAKLVAQMSEMMRESSHLWAPPIYRRLLSIDKRERDMSERCLLKIRSTILPPPISLSKAIIEDMREKLLTGMKDW-SDKGMKVQTVQAWGWFICFLGSGALKNRHLVNDMLKVLEQTFSDHNPQVQIASLVAWQGLIDALVHPQILSCKKNGIQQLQTSPGKSSELVLNGFSKSLKLAMAPLIGIISSKCDVSVLLSCLNTWCYLLHKLDTFINSPSVINVVLDPMFQAIFKIGPDSKSIRLWNLCLDLLEDSISTKCSDLNSDPKD---QVNLHLSARTFISGSGRYSWNQYPIKWLPWDLSQLDFYLKMXXXXXXXXXXXXXAPESKKSVCDAAVRIFRSVLKGVQMEFRNPSNNYDNIMFCLNTILSFMK---KLGEDASSDGGGDLFNTSLYLIEAAVEELEPSIMESPLYKVALDISYVGSLDSVKHSKIPH-RC------SFMDIFSPMXXXXXXXXXXXXXXTINTPEMELILQRLQRFYKFVLSSDDPLESFLASVGFLYAH--------MGFKYMEIWMVMVTCLNGYIDGMKDLSLF-RTDSDNSFYRAICHLLSYPFILFSCAKKDITLSKASNPLKESFVLS-ERKLEQVIEVWKSLFGSVCVACLKSSATNTLSHDL-----CAMLNSCFDENSSMFQYNSEL--GYKDLELACLSFSGKVLVCILEQKLTSDTIGRECV------GVCNGSSGINNIFEFASRVMKFMYINMGREPAS-GLVSSRVFSTLTRFISCLHSKQDILSFFEIISGLLLQWLS-----HLEIKDENAKDQLGILWAESLNCLQRSQPPLTFDSSFLKLQASLLEKTLDHPNTSVSDPT 3347 D++ Y+ LLH Q + D + S L+ ++ D + DE +AA ALKCLGF +YHP LV+T+ + +L +L +LI T+MK++CNLGVWCIS+QQ +A +L +LL A+VHA+DNP SLSTTFEA QA+ KL Q E MRE S +W PPIYRRLLS DK ERDM+ERCLL++ S +LPP LSKA+ D+ LL+ M + +D KVQ V++WGW+I LG A+ NR L+N +LKV EQ F D + QVQI+++VAW+ L++A P + + + + SP +S N K+++L M PL I+S ++++ SCL+TW +LL+KL IN V+ P+ + IF IGPD K+ L++ C++L IS K ++ S+ ++ +N +L +++ I G + I+WLPWDLS DF+L+++ I E +V D+A +IFR +++GVQ++++ + +YDN + C+ + F+K L +S+ L ++ +EEL+ ++ S Y + LDI ++ + + S P+ C S+MD+ SP +Y+ L L +V + T E+ V+ + ++F A V +Y + +++ +W + L M L + + Y+ C YPF F K TL A + L+ + ++E IEV+KS+ C S+ +H + C ++S DEN SMFQ N E K +A LS G+++ +LE + +E V S + + + SR M + + P S + SRVFS+L+ F L K+DIL FFEII L +WL + E+ DQL LW + + CL+ S+ L DSSFL+ Q LL+ L+H + +S T Sbjct: 4 DRAAAYARLLHLQRDCADDPSAAADLAAASPSVLLPILLRDAADRDEAVAASALKCLGFTLYHPVLVSTVSGQMAQLLLHTLIQLILTTQMKAICNLGVWCISVQQLEAVILDDTATSLLTAIVHAIDNPFCSLSTTFEAAQAIIKLTCQNPERMRELSSIWVPPIYRRLLSTDKGERDMAERCLLRVSSVVLPPQSPLSKAVASDLEHSLLSRMLNMLNDPVKKVQAVKSWGWYISLLGLHAVDNRPLLNKILKVPEQMFIDPDTQVQISTVVAWRNLVNAFFPPL---ASETPVPETKISPIESRADA-NAQLKNIRLIMMPLSRILSRSRNIALSSSCLSTWHHLLYKLGDLINHLPVLEAAFGPILKIIFSIGPDIKNKPLYSFCVNLFHGFISAKVQNMTSNEENLPIPLNKNLLSQSCIYLKGLMDGQR--IRWLPWDLSCFDFHLEILGSIANPELLHNMTLEIVVTVMDSATQIFRLLVQGVQLDWK-ANCSYDNALKCIAKVCKFVKVFMDLVGKQNSNNCSVLLQFGFQFVKVILEELDHCLLSSGTYLIGLDIEHIKEMQYAECS--PNLSCLGIKSQSYMDMVSPAIYMIALTLSVVAEF---TGELS---HGDAEQLAMVICLANFQDNFHAVVSIMYKQIMHLTDNRLRVRWLMVWNKIAKHLGE--QTMPHLKFICGISAQDVLYQFFC----YPFFAFLMHGKKSTLCDAESSSVSYLSLTHDLEVEVTIEVFKSI-------CANSNHGPEAAHKVFLERFCGFVSSIIDENISMFQANLEYCSDKKFKNIAFLSALGELVSGLLESGHILNHANKELTETSEEPAVSGQPSLVLSCLKLISRFMGLSTVVVKANPNSQHQIMSRVFSSLSTFAGHLLLKEDILLFFEIIGEQLTEWLFLSSTLYGEMLQGEIIDQLERLWFKIITCLKMSK--LINDSSFLQKQLVLLQAALNHSHRPISVAT 954
BLAST of g.barbadense_cottongen_reftransV1_0097326 vs. ExPASy TrEMBL
Match: A0A0D3GDD4_9ORYZ (Uncharacterized protein OS=Oryza barthii PE=4 SV=1) HSP 1 Score: 446.432 bits (1147), Expect = 2.929e-133 Identity = 333/1038 (32.08%), Postives = 527/1038 (50.77%), Query Frame = -1 Query: 432 SKTDQSLGYSTLLHFQEQSCDSPPSIQALIQSSRCLINSIVS-DIHNEDEEIAAQALKCLGFMIYHPSLVATIPAGDGKRVLESLAKLITFTKMKSVCNLGVWCISMQQFDATLLAACFDTLLQAVVHALDNPIGSLSTTFEAMQAVAKLVAQMSEMMRESSHLWAPPIYRRLLSIDKRERDMSERCLLKIRSTILPPPISLSKAIIEDMREKLLTGMKDW-SDKGMKVQTVQAWGWFICFLGSGALKNRHLVNDMLKVLEQTFSDHNPQVQIASLVAWQGLIDALVHPQILSCKKNGIQQLQTSPGKSSELVLNGFSKSLKLAMAPLIGIISSKCDVSVLLSCLNTWCYLLHKLDTFINSPSVINVVLDPMFQAIFKIGPDSKSIRLWNLCLDLLEDSISTKCSD-----------LNSDPKDQVNLHLSARTFISGSGRYSWNQYPIKWLPWDLSQLDFYLKMXXXXXXXXXXXXXAPESKKSVCDAAVRIFRSVLKGVQMEFRNPSNNYDNIMFCLNTILSFMKKLGEDASSDGGGD----LFNTSLYLIEAAVEELEPSIMESPLYKVALDISYVGSLDSVKHSKIPHRCSF--MDIFSPMXXXXXXXXXXXXXXTINTPEMELILQRLQRFYKFV--LSSDDP------------LESFLASVGFLYAH--------MGFKYMEIWMVMVTCLNGYIDGMKDLSLFRTDSDNSFYRAICHLLSYPFILFSCAKKDITLSKASNPLKESFVLS-ERKLEQVIEVWKSLFGSVCVACLKSSATNTLSHDL-----CAMLNSCFDENSSMFQ----YNSELGYKDLELACLSFSGKVLVCILEQKLTSDTIGRECVGVCNGSSGINN------IFEFASRVMKFMYINMGREPAS-GLVSSRVFSTLTRFISCLHSKQDILSFFEIISGLLLQWLS-----HLEIKDENAKDQLGILWAESLNCLQRSQPPLTFDSSFLKLQASLLEKTLDHPNTSVSDPTIIFWNSTYGKQISLDYPQNLLHVLHKLSRNGRISL 3356 ++ D++ Y+ LLH Q D P + L +S ++ ++ D + DE +AA ALKCLGF +YHP LV+T+ + VL++L +LI T+MK++CNLGVWCIS+Q+ +A ++ +LL A+VHA+DNP SLSTTFEA QA+ KL +Q E MRE S +W PPIYRRLLS+DK ERDM+ERCL+K+ S +LPP LSKAI D+ LL+ M + D KVQ V++WGW+I LG + NRHL+N +LKV EQ F D + QVQIA++VAW+ L++A + PQ + + + + SP +S N K ++L M PL I+S +++ SCL+TW +LL+KL IN ++ P+ + +F IGPD ++ L++ C++L + ISTK D LN + Q +HL +T + G I+WLPWD++ DF+L ++ I+ ES +V D+A IFR +++GVQ++ + N N C+ + F+KK+ D + L + ++ +EEL+ ++ S + + LDI ++ ++ ++ + S+ M +S M + +PE+ +I+ L +F LS D ++F A+V F+Y + +++ +W + LNG I +L + D + + YPF F + TL + + + L+ + ++E IEV++S+ C S+ H + C + S DEN S+FQ Y SE +K+ A LS G+++ +LE + +E S+G + SR M I + P + + SRVFS+L+ F L K+D+L FFEII L + LS + E++ +Q+ LW + + CL+ S+ L D SFL+ Q LL+ + HP+ +S T W ++ +L + L L KL R L Sbjct: 19 AEPDRASAYARLLHLQRACADDPSAAADLAAASPSILLPLLLRDAGDRDEAVAASALKCLGFTLYHPVLVSTVSGQMAQSVLDTLIQLIMTTQMKAICNLGVWCISVQELEAVVVDHRATSLLTAIVHAIDNPFCSLSTTFEAAQAIMKLTSQNPEKMRELSSIWVPPIYRRLLSVDKAERDMAERCLIKVSSVVLPPQSLLSKAIASDLEHSLLSCMLNMIHDPVKKVQAVKSWGWYISLLGLHVVDNRHLLNKILKVPEQLFIDSDTQVQIATMVAWRNLVNAFL-PQ---ASETLVPKTKISPIESRADT-NAQLKKIRLIMMPLGRILSRSHSIALSSSCLSTWHHLLYKLGDLINQLPILEAAFGPVLKIVFSIGPDIQNKPLYSFCVNLFHEYISTKVRDMASHGEYLPIPLNQNLLSQSCIHL--KTLMDGQC--------IRWLPWDVTCFDFHLDILVSIVNPELLRKMTLESVMTVMDSATHIFRLLVQGVQVDCKAKCAN-GNAQICVAKVCKFVKKVFMDLVGKQNNNNCSVLLQYAFQFVKVILEELDHCLLASGICVIGLDIEHIKEME---YADCSPKLSYPGMKSYSYMEMV--------------SPEVYMIVLSLSIVAEFTGELSHGDAEQLAIIICLSNFQDNFHAAVSFMYKQIMLLTDNRLRMRWLMVWNKIAKRLNGQITP----NLKKIICDAGVHDVLYQFFCYPFFAFLLPGRKSTLCGSESSSESYLSLTHDLEVEVAIEVYRSI-------CANSNHGPEADHKVFLESFCGFVVSIIDENISLFQANIEYCSEKKFKN--CAILSTLGELVSGLLENGHILNYAIKEPTEASEESAGYSQPSILLCCLRLVSRFMGLSTIVIKANPTTQHQIMSRVFSSLSAFAGYLLLKKDVLLFFEIIGEQLTECLSLSGTLYREMQHGETINQIEKLWLKIIMCLKTSK--LINDCSFLQKQQMLLQAAVSHPHRPISVATTPAWRASRSDISTLQHSSFSLSKLDKLPMERRKDL 1008 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0097326 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 2
BLAST of g.barbadense_cottongen_reftransV1_0097326 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0097326 ID=g.barbadense_cottongen_reftransV1_0097326; Name=g.barbadense_cottongen_reftransV1_0097326; organism=Gossypium barbadense; type=contig; length=3518bpback to top |