g.barbadense_cottongen_reftransV1_0097313, g.barbadense_cottongen_reftransV1_0097313 (contig) Gossypium barbadense

Overview
Nameg.barbadense_cottongen_reftransV1_0097313
Unique Nameg.barbadense_cottongen_reftransV1_0097313
Typecontig
OrganismGossypium barbadense (Sea Island cotton)
Sequence length1977
Homology
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0097313 vs. ExPASy Swiss-Prot
Match: HSD_MYCTO (3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) GN=fabG3 PE=3 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 2.158e-17
Identity = 57/153 (37.25%), Postives = 84/153 (54.90%), Query Frame = -2 
Query:  897 RMIGKXXXXXXXXXXXXXXXAKLFAENGAYVVIADILDEAG--TMLANSIGARYIHCDVAKESDVESAIQLAITWKGKLDILFSNAGIGGTASSITSLDMEQVKHLVSINLLGNVHAIKHAA*AMLRCNTKGSIICTSSSAGIMGGLASHPYS 1349
            R+IGKVA+V+GGARG+GA+  +     GA VV  DILDE G       +  ARY+H DV + +   +A+  A+T  G L +L +NAGI     +I    + + + ++ +NL G    I+     M     +GSII  SS  G+ G +A H Y+
Sbjct:    4 RLIGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAVAAELADAARYVHLDVTQPAQWTAAVDTAVTAFGGLHVLVNNAGI-LNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAG-RGSIINISSIEGLAGTVACHGYT 154

HSP 2 Score: 51.2174 bits (121), Expect = 2.158e-17
Identity = 37/111 (33.33%), Postives = 56/111 (50.45%), Query Frame = -3 
Query:  569 TLSKAGIVGLMRTAACELGVHGIRVNCISPHGVPTDMLISGYRMFRGKETTPEEVKKLVGDQGSLLRGKAATVEDVAQAAVFLASDDTGFITAHNLVIDGGYTSAISSLSF 901
            T +K  + GL ++ A ELG  GIRVN I P  V T M           +  PE++      Q +L  G+AA   +V+   V+LASD++ + T    V+DGG  + ++   F
Sbjct:  154 TATKFAVRGLTKSTALELGPGGIRVNSIHPGLVKTPM----------TDWVPEDIF-----QTAL--GRAAEPVEVSNLVVYLASDESSYSTGAEFVVDGGTVAGLAHNDF 247
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0097313 vs. ExPASy Swiss-Prot
Match: YKVO_BACSU (Uncharacterized oxidoreductase YkvO OS=Bacillus subtilis (strain 168) GN=ykvO PE=3 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 2.179e-17
Identity = 47/133 (35.34%), Postives = 65/133 (48.87%), Query Frame = -2 
Query:  900 FAENGAYVVIA----DILDEAGTMLANSIGARY--IHCDVAKESDVESAIQLAITWKGKLDILFSNAGIGGTASSITSLDMEQVKHLVSINLLGNVHAIKHAA*AMLRCNTKGSIICTSSSAGIMGGLASHPY 1280
            F   GAYV I     + LD+A     N IG     +  D++K  D++    +    KGKLDILF+NAGI G    +  +  EQV     IN+ G +  ++ A    L  +  GSII T S+AG +G  A   Y
Sbjct:   26 FVNEGAYVYITGRRQNELDKA----VNQIGKNVTGVQGDISKLEDLDKLYDIIKQEKGKLDILFANAGI-GNFLPLGEITEEQVDRTFDINVKGTIFTVQKA--LSLFPDKVGSIIVTGSTAGSIGNPAFSVY 151

HSP 2 Score: 51.9878 bits (123), Expect = 2.179e-17
Identity = 37/99 (37.37%), Postives = 51/99 (51.52%), Query Frame = -3 
Query:  599 SKAGIVGLMRTAACELGVHGIRVNCISPHGVPTDMLISGYRMFRGKETTPEEVKKLVGDQGSLLRGKAATVEDVAQAAVFLASDDTGFITAHNLVIDGG 895
            SKA +  L+R    +L    IRVN +SP G+    L   Y    G     EEV  L   + ++  GK  T E+VA A  FLASD++ ++T   L +DGG
Sbjct:  154 SKAALRALVRNWILDLKGTEIRVNVVSPGGI----LTPAYDELFGDAL--EEV--LENSRNTVPAGKVGTPEEVANAVSFLASDESSYLTGVELFVDGG 244
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0097313 vs. ExPASy Swiss-Prot
Match: Y1385_MYCBO (Uncharacterized oxidoreductase Mb1385 OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=fabG2 PE=3 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 3.806e-17
Identity = 42/132 (31.82%), Postives = 73/132 (55.30%), Query Frame = -2 
Query:  897 FAENGAYVVIADILDEAGTMLANSIG----ARYIHCDVAKESDVESAIQLAITWKGKLDILFSNAGIGGTASSITSLDMEQVKHLVSINLLGNVHAIKHAA*AMLRCNTKGSIICTSSSAGIMGGLASHPYS 1280
            F   GA VV+ D+  EA  + A  +G    A  + CDV +  DV+  I+ A+   G LD++ +NAGI   A ++ ++  EQ   +++++L G  +  + AA A++R   +G+I+  SS +G +G +    YS
Sbjct:   27 FVAEGARVVLGDVNLEATEVAAKRLGGDDVALAVRCDVTQADDVDILIRTAVERFGGLDVMVNNAGITRDA-TMRTMTEEQFDQVIAVHLKGTWNGTRLAA-AIMRERKRGAIVNMSSVSGKVGMVGQTNYS 156

HSP 2 Score: 50.447 bits (119), Expect = 3.806e-17
Identity = 37/101 (36.63%), Postives = 53/101 (52.48%), Query Frame = -3 
Query:  599 SKAGIVGLMRTAACELGVHGIRVNCISPHGVPTDMLISGYRMFRGKETTPEEV--KKLVGDQGSLLRGKAATVEDVAQAAVFLASDDTGFITAHNLVIDGG 895
            +KAGIVG+ + AA EL   GIRVN I+P  + + M           E  P+ +  +KL      +  G+A    +VA  AVFLASD + ++T   L + GG
Sbjct:  158 AKAGIVGMTKAAAKELAHLGIRVNAIAPGLIRSAM----------TEAMPQRIWDQKL----AEVPMGRAGEPSEVASVAVFLASDLSSYMTGTVLDVTGG 244
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0097313 vs. ExPASy Swiss-Prot
Match: Y1350_MYCTU (Uncharacterized oxidoreductase Rv1350 OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=fabG2 PE=1 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 3.806e-17
Identity = 42/132 (31.82%), Postives = 73/132 (55.30%), Query Frame = -2 
Query:  897 FAENGAYVVIADILDEAGTMLANSIG----ARYIHCDVAKESDVESAIQLAITWKGKLDILFSNAGIGGTASSITSLDMEQVKHLVSINLLGNVHAIKHAA*AMLRCNTKGSIICTSSSAGIMGGLASHPYS 1280
            F   GA VV+ D+  EA  + A  +G    A  + CDV +  DV+  I+ A+   G LD++ +NAGI   A ++ ++  EQ   +++++L G  +  + AA A++R   +G+I+  SS +G +G +    YS
Sbjct:   27 FVAEGARVVLGDVNLEATEVAAKRLGGDDVALAVRCDVTQADDVDILIRTAVERFGGLDVMVNNAGITRDA-TMRTMTEEQFDQVIAVHLKGTWNGTRLAA-AIMRERKRGAIVNMSSVSGKVGMVGQTNYS 156

HSP 2 Score: 50.447 bits (119), Expect = 3.806e-17
Identity = 37/101 (36.63%), Postives = 53/101 (52.48%), Query Frame = -3 
Query:  599 SKAGIVGLMRTAACELGVHGIRVNCISPHGVPTDMLISGYRMFRGKETTPEEV--KKLVGDQGSLLRGKAATVEDVAQAAVFLASDDTGFITAHNLVIDGG 895
            +KAGIVG+ + AA EL   GIRVN I+P  + + M           E  P+ +  +KL      +  G+A    +VA  AVFLASD + ++T   L + GG
Sbjct:  158 AKAGIVGMTKAAAKELAHLGIRVNAIAPGLIRSAM----------TEAMPQRIWDQKL----AEVPMGRAGEPSEVASVAVFLASDLSSYMTGTVLDVTGG 244
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0097313 vs. ExPASy Swiss-Prot
Match: Y1350_MYCTO (Uncharacterized oxidoreductase MT1393 OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) GN=fabG2 PE=3 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 3.806e-17
Identity = 42/132 (31.82%), Postives = 73/132 (55.30%), Query Frame = -2 
Query:  897 FAENGAYVVIADILDEAGTMLANSIG----ARYIHCDVAKESDVESAIQLAITWKGKLDILFSNAGIGGTASSITSLDMEQVKHLVSINLLGNVHAIKHAA*AMLRCNTKGSIICTSSSAGIMGGLASHPYS 1280
            F   GA VV+ D+  EA  + A  +G    A  + CDV +  DV+  I+ A+   G LD++ +NAGI   A ++ ++  EQ   +++++L G  +  + AA A++R   +G+I+  SS +G +G +    YS
Sbjct:   27 FVAEGARVVLGDVNLEATEVAAKRLGGDDVALAVRCDVTQADDVDILIRTAVERFGGLDVMVNNAGITRDA-TMRTMTEEQFDQVIAVHLKGTWNGTRLAA-AIMRERKRGAIVNMSSVSGKVGMVGQTNYS 156

HSP 2 Score: 50.447 bits (119), Expect = 3.806e-17
Identity = 37/101 (36.63%), Postives = 53/101 (52.48%), Query Frame = -3 
Query:  599 SKAGIVGLMRTAACELGVHGIRVNCISPHGVPTDMLISGYRMFRGKETTPEEV--KKLVGDQGSLLRGKAATVEDVAQAAVFLASDDTGFITAHNLVIDGG 895
            +KAGIVG+ + AA EL   GIRVN I+P  + + M           E  P+ +  +KL      +  G+A    +VA  AVFLASD + ++T   L + GG
Sbjct:  158 AKAGIVGMTKAAAKELAHLGIRVNAIAPGLIRSAM----------TEAMPQRIWDQKL----AEVPMGRAGEPSEVASVAVFLASDLSSYMTGTVLDVTGG 244
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0097313 vs. ExPASy TrEMBL
Match: R0HAL5_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10025571mg PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.135e-70
Identity = 70/131 (53.44%), Postives = 99/131 (75.57%), Query Frame = -2 
Query:  894 KLFAENGAYVVIADILDEAGTMLANSIGARYIHCDVAKESDVESAIQLAITWKGKLDILFSNAGIGGTASSITSLDMEQVKHLVSINLLGNVHAIKHAA*AMLRCNTKGSIICTSSSAGIMGGLASHPYSV 1286
            +LF ENGAYV++ADIL+  G  +A SIG  Y+HCDV+KE+DVE+ ++LA+  KG+LD++F+NAG+     SI  +D++ V  LVS+N+ G +H IKHAA AM++    GSIICTSSS+G+MGGL  H Y++
Sbjct:   28 RLFTENGAYVIVADILENEGIHVAESIGGCYVHCDVSKEADVEAVVELAMRRKGRLDVMFNNAGMTFNEGSIMEMDVDMVNKLVSVNVNGVLHGIKHAAKAMIKGGGGGSIICTSSSSGVMGGLGGHAYTL 158

HSP 2 Score: 146.747 bits (369), Expect = 1.135e-70
Identity = 72/115 (62.61%), Postives = 89/115 (77.39%), Query Frame = -3 
Query:  563 TLSKAGIVGLMRTAACELGVHGIRVNCISPHGVPTDMLISGYRMFRGKETTP-EEVKKLVGDQGSLLRGKAATVEDVAQAAVFLASDD-TGFITAHNLVIDGGYTSAISSLSFIY 901
            TLSK  I GL+RT ACELG HGIRVN ISPHGVPTD+L++ YR +   +    +EV  +V ++GSLL G+A  VEDVAQAA+FLAS + +GFIT HNLV+DGGYTSA S++ FIY
Sbjct:  157 TLSKGAINGLVRTTACELGSHGIRVNSISPHGVPTDILVNAYRKYLNNDKLDVDEVTDIVAEKGSLLTGRAGNVEDVAQAALFLASQESSGFITGHNLVVDGGYTSATSTMRFIY 271
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0097313 vs. ExPASy TrEMBL
Match: U5D9L1_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00044p00056720 PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 1.243e-70
Identity = 70/114 (61.40%), Postives = 94/114 (82.46%), Query Frame = -3 
Query:  563 TLSKAGIVGLMRTAACELGVHGIRVNCISPHGVPTDMLISGYRMFRGKETT-PEEVKKLVGDQGSLLRGKAATVEDVAQAAVFLASDDTGFITAHNLVIDGGYTSAISSLSFIY 901
            T+SK  +VG++R+AACELGVHGIRVNC+SPHGV +DML+  YR   G+E    E V ++V + GSLL+G++AT EDVA AA+FLASD++GF+T HNLV+DGG+TSA +++SFIY
Sbjct:  162 TMSKEAVVGIVRSAACELGVHGIRVNCVSPHGVASDMLVGAYREILGREDLGAEAVDRVVAESGSLLKGRSATPEDVANAALFLASDESGFVTGHNLVVDGGFTSACNTMSFIY 275

HSP 2 Score: 141.354 bits (355), Expect = 1.243e-70
Identity = 68/130 (52.31%), Postives = 96/130 (73.85%), Query Frame = -2 
Query:  894 LFAENGAYVVIADILDEAGTMLANSIGARYIHCDVAKESDVESAIQLAITWKGKLDILFSNAGIGGTASSITSLDMEQVKHLVSINLLGNVHAIKHAA*AMLRCNTKGSIICTSSSAGIMGGLASHPYSV 1283
            LFA +GA+V +ADILD+ G  L   IGARY+HCDV+ ESDV + ++  +   G LDI+F+NAGI G   SIT L+ + +++L+S+NL G V+ IKHAA AM++   +GSI+CT+SSA +MGGL SH Y++
Sbjct:   34 LFALHGAHVTVADILDDEGPALCTKIGARYMHCDVSLESDVAATVRSTVAQHGCLDIMFNNAGIAGQLGSITHLNSKLMQNLLSVNLCGPVYGIKHAAQAMIKGRVQGSIVCTASSAALMGGLGSHAYTM 163
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0097313 vs. ExPASy TrEMBL
Match: A0A078FYQ2_BRANA (BnaA01g23670D protein OS=Brassica napus GN=BnaA01g23670D PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 9.417e-70
Identity = 72/131 (54.96%), Postives = 100/131 (76.34%), Query Frame = -2 
Query:  894 KLFAENGAYVVIADILDEAGTMLANSIGARYIHCDVAKESDVESAIQLAITWKGKLDILFSNAGIGGTASSITSLDMEQVKHLVSINLLGNVHAIKHAA*AMLRCNTKGSIICTSSSAGIMGGLASHPYSV 1286
            +LF ENGAYV++ADILDE G  +A SIG  Y+HCDV+KE+DVE+A++LA+  KG+LD++F+NAG+     SI  +D++ V  LVS+N+ G +  IKHAA AM++    GSIICTSSS+G+MGGL  H Y++
Sbjct:   28 RLFTENGAYVIVADILDEEGVRMAESIGGCYVHCDVSKEADVEAAVELAMRRKGRLDVMFNNAGMAVNEGSIMEMDIKMVNKLVSVNVNGVLLGIKHAAKAMIKVG-GGSIICTSSSSGVMGGLGGHAYTL 157

HSP 2 Score: 141.739 bits (356), Expect = 9.417e-70
Identity = 70/115 (60.87%), Postives = 88/115 (76.52%), Query Frame = -3 
Query:  563 TLSKAGIVGLMRTAACELGVHGIRVNCISPHGVPTDMLISGYRMF-RGKETTPEEVKKLVGDQGSLLRGKAATVEDVAQAAVFLASDDTG-FITAHNLVIDGGYTSAISSLSFIY 901
            TLSK  I GL++T ACELG HGIRVN ISPHGVPT++L++ YR +         EV K V ++GSLL G+A TVEDVAQAA+FLAS+++  FIT HNLVIDGGYTSA +++ +IY
Sbjct:  156 TLSKGAINGLVKTTACELGSHGIRVNSISPHGVPTEILVNAYRTYLHNDRIDAAEVTKTVAEKGSLLTGRAGTVEDVAQAALFLASEESSRFITGHNLVIDGGYTSATTTMRYIY 270
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0097313 vs. ExPASy TrEMBL
Match: K4D6R4_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc11g018600.1 PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.056e-69
Identity = 99/152 (65.13%), Postives = 125/152 (82.24%), Query Frame = -2 
Query:  894 RMIGKXXXXXXXXXXXXXXXAKLFAENGAYVVIADILDEAGTMLANSIGARYIHCDVAKESDVESAIQLAITWKGKLDILFSNAGIGGTASSITSLDMEQVKHLVSINLLGNVHAIKHAA*AMLRCNTKGSIICTSSSAGIMGGLASHPYSV 1349
            R+ GKVAV+TGGARGIGAATA++FAENGA+VVIADIL+E GT LA SIG RYI CDV+KE +VESA+++A+ WKG+LDI+F+NAGI G   SIT++ M+Q+  L++INL G VH IKHAA  M+     G+IIC+SSSA IMGGLASH Y++
Sbjct:   20 RLRGKVAVITGGARGIGAATARVFAENGAHVVIADILNEVGTSLAESIGGRYIQCDVSKEEEVESAVKVAVEWKGRLDIMFNNAGIAGFGGSITNIRMDQMMTLLAINLHGVVHGIKHAARTMIAGKRGGTIICSSSSAAIMGGLASHSYTM 171

HSP 2 Score: 123.635 bits (309), Expect = 2.056e-69
Identity = 62/115 (53.91%), Postives = 75/115 (65.22%), Query Frame = -3 
Query:  563 TLTLSKAGIVGLMRTAACELGVHGIRVNCISPHGVPTDMLISGYRMFRGKETTPEEVKKLVGDQGSLLRGKAATVEDVAQAAVFLASDDTGFITAHNLVIDGGYTSAISSLSFIY 907
            + T+SK  I+GL R+ ACELGVHGIRVNCISPHG                            ++GSLLRG+   +EDVAQA +FLASD++GF+T HNLVIDGGYTSA S +SFIY
Sbjct:  168 SYTMSKEAILGLARSTACELGVHGIRVNCISPHG----------------------------ERGSLLRGRGGRLEDVAQAVLFLASDESGFVTGHNLVIDGGYTSAFSQMSFIY 254
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0097313 vs. ExPASy TrEMBL
Match: A0A0D3AB49_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea GN=ATA1 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.251e-69
Identity = 72/131 (54.96%), Postives = 100/131 (76.34%), Query Frame = -2 
Query:  894 KLFAENGAYVVIADILDEAGTMLANSIGARYIHCDVAKESDVESAIQLAITWKGKLDILFSNAGIGGTASSITSLDMEQVKHLVSINLLGNVHAIKHAA*AMLRCNTKGSIICTSSSAGIMGGLASHPYSV 1286
            +LF ENGAYV++ADILDE G  +A SIG  Y+HCDV+KE+DVE+A++LA+  KG+LD++F+NAG+     SI  +D++ V  LVS+N+ G +  IKHAA AM++    GSIICTSSS+G+MGGL  H Y++
Sbjct:   28 RLFTENGAYVIVADILDEEGVHMAESIGGCYVHCDVSKEADVEAAVELAMRRKGRLDVMFNNAGMAVNEGSIMEMDIKMVNKLVSVNVNGVLLGIKHAAKAMIKGG--GSIICTSSSSGVMGGLGGHAYTL 156

HSP 2 Score: 141.739 bits (356), Expect = 2.251e-69
Identity = 70/115 (60.87%), Postives = 88/115 (76.52%), Query Frame = -3 
Query:  563 TLSKAGIVGLMRTAACELGVHGIRVNCISPHGVPTDMLISGYRMF-RGKETTPEEVKKLVGDQGSLLRGKAATVEDVAQAAVFLASDDTG-FITAHNLVIDGGYTSAISSLSFIY 901
            TLSK  I GL++T ACELG HGIRVN ISPHGVPT++L++ YR +         EV K V ++GSLL G+A TVEDVAQAA+FLAS+++  FIT HNLVIDGGYTSA +++ +IY
Sbjct:  155 TLSKGAINGLVKTTACELGSHGIRVNSISPHGVPTEILVNAYRTYLHNDRIDAAEVTKTVAEKGSLLTGRAGTVEDVAQAALFLASEESSRFITGHNLVIDGGYTSATTTMRYIY 269
The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0097313 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 25
Match NameE-valueIdentityDescription
HSD_MYCTO2.158e-1737.253-alpha-(or 20-beta)-hydroxysteroid dehydrogenase ... [more]
YKVO_BACSU2.179e-1735.34Uncharacterized oxidoreductase YkvO OS=Bacillus su... [more]
Y1385_MYCBO3.806e-1731.82Uncharacterized oxidoreductase Mb1385 OS=Mycobacte... [more]
Y1350_MYCTU3.806e-1731.82Uncharacterized oxidoreductase Rv1350 OS=Mycobacte... [more]
Y1350_MYCTO3.806e-1731.82Uncharacterized oxidoreductase MT1393 OS=Mycobacte... [more]

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BLAST of g.barbadense_cottongen_reftransV1_0097313 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
R0HAL5_9BRAS1.135e-7053.44Uncharacterized protein OS=Capsella rubella GN=CAR... [more]
U5D9L1_AMBTC1.243e-7061.40Uncharacterized protein OS=Amborella trichopoda GN... [more]
A0A078FYQ2_BRANA9.417e-7054.96BnaA01g23670D protein OS=Brassica napus GN=BnaA01g... [more]
K4D6R4_SOLLC2.056e-6965.13Uncharacterized protein OS=Solanum lycopersicum GN... [more]
A0A0D3AB49_BRAOL2.251e-6954.96Uncharacterized protein OS=Brassica oleracea var. ... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002347Short-chain dehydrogenase/reductase SDRPRINTSPR00081GDHRDHcoord: 5..22
score: 53.3
coord: 74..85
score: 57.57
IPR002347Short-chain dehydrogenase/reductase SDRPFAMPF00106adh_shortcoord: 4..118
e-value: 1.4E-23
score: 83.3
IPR002347Short-chain dehydrogenase/reductase SDRPANTHERPTHR24322FAMILY NOT NAMEDcoord: 8..115
IPR016040NAD(P)-binding domainGENE3D3.40.50.720coord: 3..118
e-value: 2.4E-31
score: 108.4
IPR016040NAD(P)-binding domainSUPERFAMILY51735NAD(P)-binding Rossmann-fold domainscoord: 3..118
NoneNo IPR availablePANTHERPTHR24322:SF510ALCOHOL DEHYDROGENASE (ATA1)coord: 8..115

Sequences
The following sequences are available for this feature:

contig sequence

>g.barbadense_cottongen_reftransV1_0097313 ID=g.barbadense_cottongen_reftransV1_0097313; Name=g.barbadense_cottongen_reftransV1_0097313; organism=Gossypium barbadense; type=contig; length=1977bp
CAAAAAGCAAATAGGCCTTTTTTGTTAAAAATTTCATCCATTTCTACTAT
TAAAAATTGGTATGCCTTGTAGAATAACATAACAGCTACACATGGCTGCC
ATGTGCTGATATATAGAGATTAGTTTTTAACTGTAGAAATTAATGAAATT
TTTAACAGAATCATCAATTTACTTTTTAATTTAACGTACGAGGGTTAATT
TGTCTATTTTTTTTAGTGAAGGGAGTGAAATGTAATCTAACTCTTAATAC
AAGAGCATCTATGGTACTTTTACTGTTTTTAGCTGATGCTCACATATTGT
ACATAAATACAACATGGTTTTCAATTATATGCCATCCTTCCATGTTGGAC
TAAGCTGTTTGCATCTTGTTGGATGAAAAGACTTCCTTTAAACTAATAAT
CTTTGCTTTCTGTATTGATTCTCAATATTTGATACTATTATAGATTTAGC
ACAACTATTTTGGTTTGATTGAAGGTGTTTTTAACAATAAAAGCTACAAA
ATTGACGTCAGGTAAAGTTTGTCTTTGTTTTATTTTTTTCTTCTCCCAAT
TCTTTACTATTTGTAGATGAAACTCAGTGAACTAATAGCAGAAGTATATC
CACCATCGATAACGAGGTTATGTGCTGTTATAAATCCAGTGTCATCTGAG
GCAAGGAACACTGCAGCTTGGGCCACATCTTCAACAGTTGCAGCTTTCCC
ACGTAATAGACTCCCTTGATCACCGACCAGTTTCTTCACCTCTTCAGGTG
TTGTTTCTTTCCCCCGGAACATTCTATAACCACTAATGAGCATATCTGTA
GGTACACCATGAGGAGAAATGCAGTTCACACGAATCCCGTGCACACCTAA
CTCGCATGCTGCGGTTCTCATCAGTCCGACGATACCGGCTTTCGACAGAG
TAAGGGTGAGACGCTAGCCCTCCCATGATGCCTGCAGAACTCGATGTACA
TATGATGGAACCTTTTGTATTGCATCTCAGCATGGCTCATGCGGCATGCT
TGATCGCATGTACATTGCCAAGCAGATTGATTGAGACCAGATGTTTGACT
TGTTCCATGTCAAGGCTGGTTATGCTGCTTGCAGTGCCTCCAATGCCAGC
ATTGCTAAATAGTATGTCTAGTTTGCCTTTCCATGTGATGGCAAGTTGGA
TAGCTGATTCGACATCACTTTCCTTGGCTACATCACAATGAATGTAGCGA
GCTCCGATGGAGTTAGCAAGCATGGTCCCAGCTTCATCCAATATGTCAGC
AATGACAACATAGGCCCCATTTTCAGCAAATAATTTAGCTGTGGCAGCTC
CAATCCCTCTTGCACCACCAGTTACAACTGCGACTTTGCCAATCATCCTA
CAAAAAAAAAAAAAAAGAGGTATTCATTTCGAATTTAAGTATATAAGATT
CATCGAACATGATGCAGTGAAAAGATCATTAGTAAGAGAGGCTATTGAAG
TAGCCATTGGTACCAACCTCTTTGCAGATGAATTCTGCAAATCAACATGC
TTATCAACACCTTGCTCCATTGCATACACCAAAAAATCAAACATGGTGTA
TATATAGGAATGACTCAAAGAGGCTTTTCGAAGGTTTTTTCCTGTTTTTT
TCCCCTTTCTTTTTATATATAAAAGAGTTGGGCACTCTTTACATTCTCAA
CAACTACATCCAAACTAGATGCTTGGTAATGTTCTGTTGATAGATTCTTC
TTTAAAATCATGTGTAAATATGTATTTTATTTTGTGGTTGTTTTCTACTT
TTTAACAACCATATATCTTCTCATTTCTTCATCATGTAAAAATTTCCTAA
CGCACAACACACACTCAAAACACATGAAAAAACTTATTAGAATTATATTT
TAGGTCTAATTCTTCTCCTACTTCTTGTACTGTTTGCACATTTGAATTTT
AACCCTCTACTTTTAATCCCAGGAATTTAGTTTCTCTACTCTTTTGATTT
AAGAATTGAAGTTCCATTGTTGATCGA
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR002347SDR_fam
IPR016040NAD(P)-bd_dom