g.barbadense_cottongen_reftransV1_0097313, g.barbadense_cottongen_reftransV1_0097313 (contig) Gossypium barbadense

Overview


Name	g.barbadense_cottongen_reftransV1_0097313
Unique Name	g.barbadense_cottongen_reftransV1_0097313
Type	contig
Organism	Gossypium barbadense (Sea Island cotton)
Sequence length	1977

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium barbadense CottonGen RefTrans V1	2016-11-01
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot	2016-11-01
InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1	2016-11-02
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL	2016-11-02

Homology

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BLAST of g.barbadense_cottongen_reftransV1_0097313 vs. ExPASy Swiss-Prot
Match: ATA1_ARATH (Short-chain dehydrogenase reductase ATA1 OS=Arabidopsis thaliana GN=TA1 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.219e-67
Identity = 72/115 (62.61%), Postives = 89/115 (77.39%), Query Frame = -3

Query:  563 TLSKAGIVGLMRTAACELGVHGIRVNCISPHGVPTDMLISGYRMFRGKET-TPEEVKKLVGDQGSLLRGKAATVEDVAQAAVFLASDD-TGFITAHNLVIDGGYTSAISSLSFIY 901
            TLSK  I G++RT ACELG HGIRVN ISPHGVPTD+L++ YR F   +     EV  ++ ++GSLL G+A TVEDVAQAA+FLAS + +GFIT HNLV+DGGYTSA S++ FIY
Sbjct:  157 TLSKGAINGVVRTTACELGSHGIRVNSISPHGVPTDILVNAYRKFLNHDKLNVAEVTDIIAEKGSLLTGRAGTVEDVAQAALFLASQESSGFITGHNLVVDGGYTSATSTMRFIY 271

HSP 2 Score: 134.42 bits (337), Expect = 1.219e-67
Identity = 71/131 (54.20%), Postives = 101/131 (77.10%), Query Frame = -2

Query:  894 KLFAENGAYVVIADILDEAGTMLANSIGARYIHCDVAKESDVESAIQLAITWKGKLDILFSNAGIGGTASSITSLDMEQVKHLVSINLLGNVHAIKHAA*AMLRCNTKGSIICTSSSAGIMGGLASHPYSV 1286
            +LF ENGAYV++ADIL+  G ++A SIG  Y+HCDV+KE+DVE+A++LA+  KG+LD++F+NAG+     SI  +D++ V  LVS+N+ G +H IKHAA AM++    GSIICTSSS+G+MGGL  H Y++
Sbjct:   28 RLFTENGAYVIVADILENEGILVAESIGGCYVHCDVSKEADVEAAVELAMRRKGRLDVMFNNAGMSLNEGSIMGMDVDMVNKLVSVNVNGVLHGIKHAAKAMIKGGRGGSIICTSSSSGLMGGLGGHAYTL 158

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BLAST of g.barbadense_cottongen_reftransV1_0097313 vs. ExPASy Swiss-Prot
Match: SDR2A_ARATH (Short-chain dehydrogenase reductase 2a OS=Arabidopsis thaliana GN=SDR2a PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.838e-43
Identity = 57/139 (41.01%), Postives = 86/139 (61.87%), Query Frame = -2

Query:  897 LFAENGAYVVIADILDEAGTMLANSIGAR-------YIHCDVAKESDVESAIQLAITWKGKLDILFSNAGIGGTAS---SITSLDMEQVKHLVSINLLGNVHAIKHAA*AMLRCNTKGSIICTSSSAGIMGGLASHPYS 1283
            LFA +GA VVIAD+ + AG+ LA S+ +        +I CDV+ E+DVE+ + + +   G+LDILF+NAG+ G      SI   D ++  H++ +N+ G    +KH A AM++   KG II T+S AG+MGG+  H Y+
Sbjct:   53 LFARHGATVVIADVDNVAGSSLAKSLSSHKTSPMVAFISCDVSVEADVENLVNVTVARYGRLDILFNNAGVLGDQKKHKSILDFDADEFDHVMRVNVRGVGLGMKHGARAMIKRGFKGCIISTASVAGVMGGMGPHAYT 191

HSP 2 Score: 95.9005 bits (237), Expect = 3.838e-43
Identity = 51/107 (47.66%), Postives = 74/107 (69.16%), Query Frame = -3

Query:  587 TLSKAGIVGLMRTAACELGVHGIRVNCISPHGVPTDMLISGYRMFRGKETTPEEVKKLVGDQGSL--LRGKAATVEDVAQAAVFLASDDTGFITAHNLVIDGGYTSA 901
            T SK  IVGL + AACELG +GIRVNCISP GV T ML++ +R   G +   ++V+++     SL  L+G+     D+A+AA++LASD++ ++  HNLV+DGG T+A
Sbjct:  191 TASKHAIVGLTKNAACELGKYGIRVNCISPFGVATSMLVNAWRKTSGGDVEDDDVEEMEEFVRSLANLKGETLRANDIAEAALYLASDESKYVNGHNLVVDGGVTTA 297

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BLAST of g.barbadense_cottongen_reftransV1_0097313 vs. ExPASy Swiss-Prot
Match: SDR3B_ARATH (Short-chain dehydrogenase reductase 3b OS=Arabidopsis thaliana GN=SDR3b PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 7.411e-41
Identity = 61/133 (45.86%), Postives = 85/133 (63.91%), Query Frame = -2

Query:  897 KLFAENGAYVVIADILDEAGTMLANSIG---ARYIHCDVAKESDVESAIQLAITWKGKLDILFSNAGIGGTASSITSLDMEQVKHLVSINLLGNVHAIKHAA*AMLRCNTKGSIICTSSSAGIMGGLASHPYS 1286
            +LF E+GA VVI D+ DE G  +A SIG   A Y HCDV  E++VE+A++  +   GKLD+LFSNAG+     SI  L++ ++   ++INL G    IKHAA AM+    +GSI+CT+S A  + G A H Y+
Sbjct:   26 RLFTEHGARVVIVDVQDELGQNVAVSIGEDKASYYHCDVTNETEVENAVKFTVEKYGKLDVLFSNAGVIEPFVSILDLNLNELDRTIAINLRGTAAFIKHAARAMVEKGIRGSIVCTTSVAAEIAGTAPHGYT 158

HSP 2 Score: 75.485 bits (184), Expect = 7.411e-41
Identity = 39/103 (37.86%), Postives = 66/103 (64.08%), Query Frame = -3

Query:  593 TLSKAGIVGLMRTAACELGVHGIRVNCISPHGVPTDMLISGYRMFRGKETTPEEVKKLVGDQGSLLRGKAATVEDVAQAAVFLASDDTGFITAHNLVIDGGYT 901
            T SK G++GL+++A+  LG +GIRVN ++P GV T ++ +G++M       P  V++      + L+G       VA+AA+FLASD++ +++  NL +DGGY+
Sbjct:  158 TTSKHGLLGLIKSASGGLGKYGIRVNGVAPFGVATPLVCNGFKM------EPNVVEQNTSASAN-LKGIVLKARHVAEAALFLASDESAYVSGQNLAVDGGYS 253

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BLAST of g.barbadense_cottongen_reftransV1_0097313 vs. ExPASy Swiss-Prot
Match: SDR4_ARATH (Short-chain dehydrogenase reductase 4 OS=Arabidopsis thaliana GN=SDR4 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 7.517e-39
Identity = 58/133 (43.61%), Postives = 84/133 (63.16%), Query Frame = -2

Query:  897 KLFAENGAYVVIADILDEAGTMLANSIG---ARYIHCDVAKESDVESAIQLAITWKGKLDILFSNAGIGGTASSITSLDMEQVKHLVSINLLGNVHAIKHAA*AMLRCNTKGSIICTSSSAGIMGGLASHPYS 1286
            +LF ++GA VVI DI +E G  LA SIG   A +  C+V  E+DVE+A++  +   GKLD+LFSNAG+     S+  LD+E     +++N+ G    IKHAA +M+   T+GSI+CT+S A  +GG   H Y+
Sbjct:   64 RLFTDHGAKVVIVDIQEELGQNLAVSIGLDKASFYRCNVTDETDVENAVKFTVEKHGKLDVLFSNAGVLEAFGSVLDLDLEAFDRTMAVNVRGAAAFIKHAARSMVASGTRGSIVCTTSIAAEIGGPGPHSYT 196

HSP 2 Score: 74.3294 bits (181), Expect = 7.517e-39
Identity = 43/108 (39.81%), Postives = 65/108 (60.19%), Query Frame = -3

Query:  593 TLTLSKAGIVGLMRTAACELGVHGIRVNCISPHGVPTDMLISGYRMFRGKETTPEEVKKLVGDQGSLL---RGKAATVEDVAQAAVFLASDDTGFITAHNLVIDGGYT 907
            + T SK  ++GL+R+A   LG +GIRVN ++P+GV T M  S Y          EE  K++ + G  L   +G       +A+AA+FLASDD+ +I+  NLV+DGG++
Sbjct:  194 SYTASKHALLGLIRSACAGLGQYGIRVNGVAPYGVATGM-TSAYN---------EEAVKMLEEYGEALGNLKGVVLKARHIAEAALFLASDDSVYISGQNLVVDGGFS 291

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BLAST of g.barbadense_cottongen_reftransV1_0097313 vs. ExPASy Swiss-Prot
Match: SDR3C_ARATH (Short-chain dehydrogenase reductase 3c OS=Arabidopsis thaliana GN=SDR3c PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.056e-37
Identity = 54/133 (40.60%), Postives = 82/133 (61.65%), Query Frame = -2

Query:  897 KLFAENGAYVVIADILDEAGTMLANSIG---ARYIHCDVAKESDVESAIQLAITWKGKLDILFSNAGIGGTASSITSLDMEQVKHLVSINLLGNVHAIKHAA*AMLRCNTKGSIICTSSSAGIMGGLASHPYS 1286
            +LF ++GA VVI D+ +E G  +A  IG   A +  CDV  E++VE A++  +   GKLD+LFSNAG+     S    D+E+   ++++N+ G    IKHAA AM+   T+GSI+CT+S +  +GG   H Y+
Sbjct:   26 RLFTDHGAKVVIVDVQEELGQNVAVLIGKDKASFYRCDVTNETEVEDAVKFTVEKHGKLDVLFSNAGVLEPLESFLDFDLERFDRIMAVNVRGAAAFIKHAARAMVEKGTRGSIVCTTSVSAEIGG-GHHGYT 157

HSP 2 Score: 77.411 bits (189), Expect = 2.056e-37
Identity = 43/103 (41.75%), Postives = 63/103 (61.17%), Query Frame = -3

Query:  593 TLSKAGIVGLMRTAACELGVHGIRVNCISPHGVPTDMLISGYRMFRGKETTPEEVKKLVGDQGSLLRGKAATVEDVAQAAVFLASDDTGFITAHNLVIDGGYT 901
            T SK G+VGL+R+A  +LG +GIRVN ++P+ V T M           E T ++++     +G +L+G       VAQ A+FLASDD+ +I+  NL +DGGYT
Sbjct:  157 TASKHGLVGLIRSACGDLGKYGIRVNGVAPYAVATPMT-------SHDEVTGKQLEDYFDAKG-ILKGMVLKASHVAQVALFLASDDSAYISGQNLAVDGGYT 251

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BLAST of g.barbadense_cottongen_reftransV1_0097313 vs. ExPASy Swiss-Prot
Match: SDR5_ARATH (Short-chain dehydrogenase reductase 5 OS=Arabidopsis thaliana GN=SDR5 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 4.506e-37
Identity = 55/133 (41.35%), Postives = 83/133 (62.41%), Query Frame = -2

Query:  897 KLFAENGAYVVIADILDEAGTMLANSIG---ARYIHCDVAKESDVESAIQLAITWKGKLDILFSNAGIGGTASSITSLDMEQVKHLVSINLLGNVHAIKHAA*AMLRCNTKGSIICTSSSAGIMGGLASHPYS 1286
            +LF ++GA VVI D+ +E G  +A SIG   A +  CD+  E++VE+A++  +   GKLD+LFSNAG+     SI  LD+E     +++N+ G    IKHAA +M+   T+GSI+CT+S    +GG   H Y+
Sbjct:   26 RLFTDHGAKVVIVDLQEELGQNVAVSIGLDKASFYRCDITDETEVENAVKFTVEKHGKLDVLFSNAGVMEPHGSILDLDLEAFDRTMAVNVRGAAAFIKHAARSMVASGTRGSIVCTTSVTAEIGGPGPHSYT 158

HSP 2 Score: 71.2478 bits (173), Expect = 4.506e-37
Identity = 44/108 (40.74%), Postives = 63/108 (58.33%), Query Frame = -3

Query:  593 TLTLSKAGIVGLMRTAACELGVHGIRVNCISPHGVPTDMLISGYRMFRGKETTPEEVKKLVGDQGS---LLRGKAATVEDVAQAAVFLASDDTGFITAHNLVIDGGYT 907
            + T SK  ++GL+R+A   LG +GIRVN ++P+GV T           G  +  EE  K+V D  S   +L+G       VA AA+FLASDD+ +I+  NL +DGGY+
Sbjct:  156 SYTASKHALLGLVRSACGGLGKYGIRVNGVAPYGVAT-----------GLTSYNEETVKMVEDYCSATAILKGVVLKARHVADAALFLASDDSVYISGQNLGVDGGYS 252

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BLAST of g.barbadense_cottongen_reftransV1_0097313 vs. ExPASy Swiss-Prot
Match: SDR3A_ARATH (Short-chain dehydrogenase reductase 3a OS=Arabidopsis thaliana GN=SDR3a PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.119e-36
Identity = 56/133 (42.11%), Postives = 82/133 (61.65%), Query Frame = -2

Query:  897 KLFAENGAYVVIADILDEAGTMLANSIG---ARYIHCDVAKESDVESAIQLAITWKGKLDILFSNAGIGGTASSITSLDMEQVKHLVSINLLGNVHAIKHAA*AMLRCNTKGSIICTSSSAGIMGGLASHPYS 1286
            +LF ++GA VVI D  +E G  +A S+G   A +  CDV  E +VE+A++  +   GKLD+LFSNAG+     S   L++EQ    +++N+ G    IKHAA AM+   T+GSI+CT+S A  +GG   H Y+
Sbjct:   26 RLFTDHGAKVVIVDFQEELGQNVAVSVGKDKASFYRCDVTNEKEVENAVKFTVEKYGKLDVLFSNAGVMEQPGSFLDLNLEQFDRTMAVNVRGAAAFIKHAARAMVEKGTRGSIVCTTSVASEIGGPGPHAYT 158

HSP 2 Score: 67.3958 bits (163), Expect = 1.119e-36
Identity = 37/106 (34.91%), Postives = 62/106 (58.49%), Query Frame = -3

Query:  593 TLSKAGIVGLMRTAACELGVHGIRVNCISPHGVPTDMLISGYRMFRGKETTPEEVKKLVGDQGS---LLRGKAATVEDVAQAAVFLASDDTGFITAHNLVIDGGYT 901
            T SK  ++GL+++A   LG +GIRVN ++P+ V T +            +  EE  ++V +  +   +L+G       VA+AA+FLASDD+ +++  NL +DGGY+
Sbjct:  158 TASKHALLGLVKSACGGLGKYGIRVNGVAPYAVATAI-----------NSRDEETVRMVEEYSAATGILKGVVLKARHVAEAALFLASDDSAYVSGQNLAVDGGYS 252

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BLAST of g.barbadense_cottongen_reftransV1_0097313 vs. ExPASy Swiss-Prot
Match: TS2_MAIZE (Sex determination protein tasselseed-2 OS=Zea mays GN=TS2 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 5.050e-36
Identity = 52/123 (42.28%), Postives = 71/123 (57.72%), Query Frame = -3

Query:  587 TLSKAGIVGLMRTAACELGVHGIRVNCISPHGVPTDMLISGYRMFRGKE--------------TTP--EEVKKL--VGDQGSLLRGKAATVEDVAQAAVFLASDDTGFITAHNLVIDGGYTSA 901
            T SK  IVGL + AACEL  HG+RVNC+SP GV T MLI+ +R                    T P  +EV+K+  V    + L+G      D+A+A +FLASD+  +I+ HNLV+DGG T++
Sbjct:  208 TASKHAIVGLTKNAACELRAHGVRVNCVSPFGVATPMLINAWRQGHDDATADADRDLDLDLDVTVPSDQEVEKMEEVVRGLATLKGPTLRPRDIAEAVLFLASDEARYISGHNLVVDGGVTTS 330

HSP 2 Score: 85.8853 bits (211), Expect = 5.050e-36
Identity = 54/137 (39.42%), Postives = 82/137 (59.85%), Query Frame = -2

Query:  897 KLFAENGAYVVIADILDEAGTMLANSIGAR--YIHCDVAKESDVESAIQLAITWK-GKLDILFSNAGIGG----TASSITSLDMEQVKHLVSINLLGNVHAIKHAA*AMLRCNTKGSIICTSSSAGIMGGLASHPYS 1286
            +LFA++GA VVIADI D AG  LA+++G +  ++ CDV+ E DV  A+  A++   G+LD+  +NAG+ G     A SI S D  +   ++ +N LG    +KHAA   +     GSI+  +S A ++GGL  H Y+
Sbjct:   73 RLFAKHGARVVIADIDDAAGEALASALGPQVSFVRCDVSVEDDVRRAVDWALSRHGGRLDVYCNNAGVLGRQTRAARSILSFDAAEFDRVLRVNALGAALGMKHAA-RAMAPRRAGSIVSVASVAAVLGGLGPHAYT 208

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BLAST of g.barbadense_cottongen_reftransV1_0097313 vs. ExPASy Swiss-Prot
Match: SILD_FORIN (Secoisolariciresinol dehydrogenase (Fragment) OS=Forsythia intermedia PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 7.657e-36
Identity = 54/133 (40.60%), Postives = 79/133 (59.40%), Query Frame = -2

Query:  900 KLFAENGAYVVIADILDEAGTMLANSIG---ARYIHCDVAKESDVESAIQLAITWKGKLDILFSNAGIG-GTASSITSLDMEQVKHLVSINLLGNVHAIKHAA*AMLRCNTKGSIICTSSSAGIMGGLASHPY 1286
            KLF+++GA V IAD+ DE G  +  +IG   + YIHCDV  E  V++A+   ++  GKLDI+FSNAGI       I   +    + + S+N+ G    +KHAA  M+   + G+II T+S +  MGG +SH Y
Sbjct:   35 KLFSQHGAKVAIADVQDELGHSVVEAIGTSNSTYIHCDVTNEDGVKNAVDNTVSTYGKLDIMFSNAGISDPNRPRIIDNEKADFERVFSVNVTGVFLCMKHAARVMIPARS-GNIISTASLSSTMGGGSSHAY 166

HSP 2 Score: 84.7297 bits (208), Expect = 7.657e-36
Identity = 45/101 (44.55%), Postives = 65/101 (64.36%), Query Frame = -3

Query:  593 SKAGIVGLMRTAACELGVHGIRVNCISPHGVPTDMLISGYRMFRGKETTPEEVKKLVGDQGSLLRGKAATVEDVAQAAVFLASDDTGFITAHNLVIDGGYT 895
            SK  ++GL R  A ELG  GIRVNC+SP G+PT +     + F G +   EE + ++   G+L +G    VEDVA AA++LASD+  +++ HNL IDGG++
Sbjct:  169 SKHAVLGLTRNLAVELGQFGIRVNCLSPFGLPTAL----GKKFSGIKN-EEEFENVINFAGNL-KGPKFNVEDVANAALYLASDEAKYVSGHNLFIDGGFS 263

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BLAST of g.barbadense_cottongen_reftransV1_0097313 vs. ExPASy Swiss-Prot
Match: TPRL2_ERYCB (Tropinone reductase-like 2 OS=Erythroxylum coca PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 4.799e-34
Identity = 56/135 (41.48%), Postives = 79/135 (58.52%), Query Frame = -2

Query:  897 KLFAENGAYVVIADILDEAGTMLANSIGAR--YIHCDVAKESDVESAIQLAITWKGKLDILFSNAGI---GGTASSITSLDMEQVKHLVSINLLGNVHAIKHAA*AMLRCNTKGSIICTSSSAGIMGGLASHPYS 1286
            +LF ENGA VVIADI D+ G  LA  +G +  YIHCDV+KE +V + +   +   G+LDI+F+NAGI    G   S+   +   +  L+S+NL G     KHA   M++   KG I+ TSS    + GL+ H Y+
Sbjct:   31 ELFHENGAKVVIADIQDDLGQALATKLGGKACYIHCDVSKEDEVINLVDTTVAKYGRLDIMFNNAGIIEGQGLPVSVVESEKSDLDRLLSVNLGGAFLGAKHATRVMVQ-QRKGCILFTSSVCTSIAGLSGHAYA 164

HSP 2 Score: 75.0998 bits (183), Expect = 4.799e-34
Identity = 41/102 (40.20%), Postives = 66/102 (64.71%), Query Frame = -3

Query:  593 SKAGIVGLMRTAACELGVHGIRVNCISPHGVPTDMLISGYRMFRGK-ETTPEEVKKLVGDQGSLLRGKAATVEDVAQAAVFLASDDTGFITAHNLVIDGGYT 895
            SK+G+ GL +    ELG +GIRVNCISP+G     L++G     G+ E   E V+ ++ + G+ L G+    + +A+AA+FLASD+  +++  N+V+DGGY+
Sbjct:  166 SKSGVCGLAKNLTPELGKYGIRVNCISPYG-----LVTGVSNVSGEGEANREFVEAMLSELGT-LSGQTLRADGIAKAALFLASDEAYYVSGINMVVDGGYS 261

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BLAST of g.barbadense_cottongen_reftransV1_0097313 vs. ExPASy TrEMBL
Match: R0HAL5_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10025571mg PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.135e-70
Identity = 70/131 (53.44%), Postives = 99/131 (75.57%), Query Frame = -2

Query:  894 KLFAENGAYVVIADILDEAGTMLANSIGARYIHCDVAKESDVESAIQLAITWKGKLDILFSNAGIGGTASSITSLDMEQVKHLVSINLLGNVHAIKHAA*AMLRCNTKGSIICTSSSAGIMGGLASHPYSV 1286
            +LF ENGAYV++ADIL+  G  +A SIG  Y+HCDV+KE+DVE+ ++LA+  KG+LD++F+NAG+     SI  +D++ V  LVS+N+ G +H IKHAA AM++    GSIICTSSS+G+MGGL  H Y++
Sbjct:   28 RLFTENGAYVIVADILENEGIHVAESIGGCYVHCDVSKEADVEAVVELAMRRKGRLDVMFNNAGMTFNEGSIMEMDVDMVNKLVSVNVNGVLHGIKHAAKAMIKGGGGGSIICTSSSSGVMGGLGGHAYTL 158

HSP 2 Score: 146.747 bits (369), Expect = 1.135e-70
Identity = 72/115 (62.61%), Postives = 89/115 (77.39%), Query Frame = -3

Query:  563 TLSKAGIVGLMRTAACELGVHGIRVNCISPHGVPTDMLISGYRMFRGKETTP-EEVKKLVGDQGSLLRGKAATVEDVAQAAVFLASDD-TGFITAHNLVIDGGYTSAISSLSFIY 901
            TLSK  I GL+RT ACELG HGIRVN ISPHGVPTD+L++ YR +   +    +EV  +V ++GSLL G+A  VEDVAQAA+FLAS + +GFIT HNLV+DGGYTSA S++ FIY
Sbjct:  157 TLSKGAINGLVRTTACELGSHGIRVNSISPHGVPTDILVNAYRKYLNNDKLDVDEVTDIVAEKGSLLTGRAGNVEDVAQAALFLASQESSGFITGHNLVVDGGYTSATSTMRFIY 271

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BLAST of g.barbadense_cottongen_reftransV1_0097313 vs. ExPASy TrEMBL
Match: U5D9L1_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00044p00056720 PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 1.243e-70
Identity = 70/114 (61.40%), Postives = 94/114 (82.46%), Query Frame = -3

Query:  563 TLSKAGIVGLMRTAACELGVHGIRVNCISPHGVPTDMLISGYRMFRGKETT-PEEVKKLVGDQGSLLRGKAATVEDVAQAAVFLASDDTGFITAHNLVIDGGYTSAISSLSFIY 901
            T+SK  +VG++R+AACELGVHGIRVNC+SPHGV +DML+  YR   G+E    E V ++V + GSLL+G++AT EDVA AA+FLASD++GF+T HNLV+DGG+TSA +++SFIY
Sbjct:  162 TMSKEAVVGIVRSAACELGVHGIRVNCVSPHGVASDMLVGAYREILGREDLGAEAVDRVVAESGSLLKGRSATPEDVANAALFLASDESGFVTGHNLVVDGGFTSACNTMSFIY 275

HSP 2 Score: 141.354 bits (355), Expect = 1.243e-70
Identity = 68/130 (52.31%), Postives = 96/130 (73.85%), Query Frame = -2

Query:  894 LFAENGAYVVIADILDEAGTMLANSIGARYIHCDVAKESDVESAIQLAITWKGKLDILFSNAGIGGTASSITSLDMEQVKHLVSINLLGNVHAIKHAA*AMLRCNTKGSIICTSSSAGIMGGLASHPYSV 1283
            LFA +GA+V +ADILD+ G  L   IGARY+HCDV+ ESDV + ++  +   G LDI+F+NAGI G   SIT L+ + +++L+S+NL G V+ IKHAA AM++   +GSI+CT+SSA +MGGL SH Y++
Sbjct:   34 LFALHGAHVTVADILDDEGPALCTKIGARYMHCDVSLESDVAATVRSTVAQHGCLDIMFNNAGIAGQLGSITHLNSKLMQNLLSVNLCGPVYGIKHAAQAMIKGRVQGSIVCTASSAALMGGLGSHAYTM 163

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097313 vs. ExPASy TrEMBL
Match: A0A078FYQ2_BRANA (BnaA01g23670D protein OS=Brassica napus GN=BnaA01g23670D PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 9.417e-70
Identity = 72/131 (54.96%), Postives = 100/131 (76.34%), Query Frame = -2

Query:  894 KLFAENGAYVVIADILDEAGTMLANSIGARYIHCDVAKESDVESAIQLAITWKGKLDILFSNAGIGGTASSITSLDMEQVKHLVSINLLGNVHAIKHAA*AMLRCNTKGSIICTSSSAGIMGGLASHPYSV 1286
            +LF ENGAYV++ADILDE G  +A SIG  Y+HCDV+KE+DVE+A++LA+  KG+LD++F+NAG+     SI  +D++ V  LVS+N+ G +  IKHAA AM++    GSIICTSSS+G+MGGL  H Y++
Sbjct:   28 RLFTENGAYVIVADILDEEGVRMAESIGGCYVHCDVSKEADVEAAVELAMRRKGRLDVMFNNAGMAVNEGSIMEMDIKMVNKLVSVNVNGVLLGIKHAAKAMIKVG-GGSIICTSSSSGVMGGLGGHAYTL 157

HSP 2 Score: 141.739 bits (356), Expect = 9.417e-70
Identity = 70/115 (60.87%), Postives = 88/115 (76.52%), Query Frame = -3

Query:  563 TLSKAGIVGLMRTAACELGVHGIRVNCISPHGVPTDMLISGYRMF-RGKETTPEEVKKLVGDQGSLLRGKAATVEDVAQAAVFLASDDTG-FITAHNLVIDGGYTSAISSLSFIY 901
            TLSK  I GL++T ACELG HGIRVN ISPHGVPT++L++ YR +         EV K V ++GSLL G+A TVEDVAQAA+FLAS+++  FIT HNLVIDGGYTSA +++ +IY
Sbjct:  156 TLSKGAINGLVKTTACELGSHGIRVNSISPHGVPTEILVNAYRTYLHNDRIDAAEVTKTVAEKGSLLTGRAGTVEDVAQAALFLASEESSRFITGHNLVIDGGYTSATTTMRYIY 270

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097313 vs. ExPASy TrEMBL
Match: K4D6R4_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc11g018600.1 PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.056e-69
Identity = 99/152 (65.13%), Postives = 125/152 (82.24%), Query Frame = -2

Query:  894 RMIGKXXXXXXXXXXXXXXXAKLFAENGAYVVIADILDEAGTMLANSIGARYIHCDVAKESDVESAIQLAITWKGKLDILFSNAGIGGTASSITSLDMEQVKHLVSINLLGNVHAIKHAA*AMLRCNTKGSIICTSSSAGIMGGLASHPYSV 1349
            R+ GKVAV+TGGARGIGAATA++FAENGA+VVIADIL+E GT LA SIG RYI CDV+KE +VESA+++A+ WKG+LDI+F+NAGI G   SIT++ M+Q+  L++INL G VH IKHAA  M+     G+IIC+SSSA IMGGLASH Y++
Sbjct:   20 RLRGKVAVITGGARGIGAATARVFAENGAHVVIADILNEVGTSLAESIGGRYIQCDVSKEEEVESAVKVAVEWKGRLDIMFNNAGIAGFGGSITNIRMDQMMTLLAINLHGVVHGIKHAARTMIAGKRGGTIICSSSSAAIMGGLASHSYTM 171

HSP 2 Score: 123.635 bits (309), Expect = 2.056e-69
Identity = 62/115 (53.91%), Postives = 75/115 (65.22%), Query Frame = -3

Query:  563 TLTLSKAGIVGLMRTAACELGVHGIRVNCISPHGVPTDMLISGYRMFRGKETTPEEVKKLVGDQGSLLRGKAATVEDVAQAAVFLASDDTGFITAHNLVIDGGYTSAISSLSFIY 907
            + T+SK  I+GL R+ ACELGVHGIRVNCISPHG                            ++GSLLRG+   +EDVAQA +FLASD++GF+T HNLVIDGGYTSA S +SFIY
Sbjct:  168 SYTMSKEAILGLARSTACELGVHGIRVNCISPHG----------------------------ERGSLLRGRGGRLEDVAQAVLFLASDESGFVTGHNLVIDGGYTSAFSQMSFIY 254

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097313 vs. ExPASy TrEMBL
Match: A0A0D3AB49_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea GN=ATA1 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.251e-69
Identity = 72/131 (54.96%), Postives = 100/131 (76.34%), Query Frame = -2

Query:  894 KLFAENGAYVVIADILDEAGTMLANSIGARYIHCDVAKESDVESAIQLAITWKGKLDILFSNAGIGGTASSITSLDMEQVKHLVSINLLGNVHAIKHAA*AMLRCNTKGSIICTSSSAGIMGGLASHPYSV 1286
            +LF ENGAYV++ADILDE G  +A SIG  Y+HCDV+KE+DVE+A++LA+  KG+LD++F+NAG+     SI  +D++ V  LVS+N+ G +  IKHAA AM++    GSIICTSSS+G+MGGL  H Y++
Sbjct:   28 RLFTENGAYVIVADILDEEGVHMAESIGGCYVHCDVSKEADVEAAVELAMRRKGRLDVMFNNAGMAVNEGSIMEMDIKMVNKLVSVNVNGVLLGIKHAAKAMIKGG--GSIICTSSSSGVMGGLGGHAYTL 156

HSP 2 Score: 141.739 bits (356), Expect = 2.251e-69
Identity = 70/115 (60.87%), Postives = 88/115 (76.52%), Query Frame = -3

Query:  563 TLSKAGIVGLMRTAACELGVHGIRVNCISPHGVPTDMLISGYRMF-RGKETTPEEVKKLVGDQGSLLRGKAATVEDVAQAAVFLASDDTG-FITAHNLVIDGGYTSAISSLSFIY 901
            TLSK  I GL++T ACELG HGIRVN ISPHGVPT++L++ YR +         EV K V ++GSLL G+A TVEDVAQAA+FLAS+++  FIT HNLVIDGGYTSA +++ +IY
Sbjct:  155 TLSKGAINGLVKTTACELGSHGIRVNSISPHGVPTEILVNAYRTYLHNDRIDAAEVTKTVAEKGSLLTGRAGTVEDVAQAALFLASEESSRFITGHNLVIDGGYTSATTTMRYIY 269

The following BLAST results are available for this feature:

BLAST of g.barbadense_cottongen_reftransV1_0097313 vs. ExPASy Swiss-Prot
BLAST of g.barbadense_cottongen_reftransV1_0097313 vs. ExPASy TrEMBL

BLAST of g.barbadense_cottongen_reftransV1_0097313 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 25


Match Name	E-value	Identity	Description
ATA1_ARATH	1.219e-67	62.61	Short-chain dehydrogenase reductase ATA1 OS=Arabid...	[more]
SDR2A_ARATH	3.838e-43	41.01	Short-chain dehydrogenase reductase 2a OS=Arabidop...	[more]
SDR3B_ARATH	7.411e-41	45.86	Short-chain dehydrogenase reductase 3b OS=Arabidop...	[more]
SDR4_ARATH	7.517e-39	43.61	Short-chain dehydrogenase reductase 4 OS=Arabidops...	[more]
SDR3C_ARATH	2.056e-37	40.60	Short-chain dehydrogenase reductase 3c OS=Arabidop...	[more]
SDR5_ARATH	4.506e-37	41.35	Short-chain dehydrogenase reductase 5 OS=Arabidops...	[more]
SDR3A_ARATH	1.119e-36	42.11	Short-chain dehydrogenase reductase 3a OS=Arabidop...	[more]
TS2_MAIZE	5.050e-36	42.28	Sex determination protein tasselseed-2 OS=Zea mays...	[more]
SILD_FORIN	7.657e-36	40.60	Secoisolariciresinol dehydrogenase (Fragment) OS=F...	[more]
TPRL2_ERYCB	4.799e-34	41.48	Tropinone reductase-like 2 OS=Erythroxylum coca PE...	[more]

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BLAST of g.barbadense_cottongen_reftransV1_0097313 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
R0HAL5_9BRAS	1.135e-70	53.44	Uncharacterized protein OS=Capsella rubella GN=CAR...	[more]
U5D9L1_AMBTC	1.243e-70	61.40	Uncharacterized protein OS=Amborella trichopoda GN...	[more]
A0A078FYQ2_BRANA	9.417e-70	54.96	BnaA01g23670D protein OS=Brassica napus GN=BnaA01g...	[more]
K4D6R4_SOLLC	2.056e-69	65.13	Uncharacterized protein OS=Solanum lycopersicum GN...	[more]
A0A0D3AB49_BRAOL	2.251e-69	54.96	Uncharacterized protein OS=Brassica oleracea var. ...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002347	Short-chain dehydrogenase/reductase SDR	PRINTS	PR00081	GDHRDH	coord: 5..22 score: 53.3 coord: 74..85 score: 57.57
IPR002347	Short-chain dehydrogenase/reductase SDR	PFAM	PF00106	adh_short	coord: 4..118 e-value: 1.4E-23 score: 83.3
IPR002347	Short-chain dehydrogenase/reductase SDR	PANTHER	PTHR24322	FAMILY NOT NAMED	coord: 8..115
IPR016040	NAD(P)-binding domain	GENE3D	3.40.50.720		coord: 3..118 e-value: 2.4E-31 score: 108.4
IPR016040	NAD(P)-binding domain	SUPERFAMILY	51735	NAD(P)-binding Rossmann-fold domains	coord: 3..118
None	No IPR available	PANTHER	PTHR24322:SF510	ALCOHOL DEHYDROGENASE (ATA1)	coord: 8..115

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.barbadense_cottongen_reftransV1_0097313 ID=g.barbadense_cottongen_reftransV1_0097313; Name=g.barbadense_cottongen_reftransV1_0097313; organism=Gossypium barbadense; type=contig; length=1977bp
CAAAAAGCAAATAGGCCTTTTTTGTTAAAAATTTCATCCATTTCTACTAT
TAAAAATTGGTATGCCTTGTAGAATAACATAACAGCTACACATGGCTGCC
ATGTGCTGATATATAGAGATTAGTTTTTAACTGTAGAAATTAATGAAATT
TTTAACAGAATCATCAATTTACTTTTTAATTTAACGTACGAGGGTTAATT
TGTCTATTTTTTTTAGTGAAGGGAGTGAAATGTAATCTAACTCTTAATAC
AAGAGCATCTATGGTACTTTTACTGTTTTTAGCTGATGCTCACATATTGT
ACATAAATACAACATGGTTTTCAATTATATGCCATCCTTCCATGTTGGAC
TAAGCTGTTTGCATCTTGTTGGATGAAAAGACTTCCTTTAAACTAATAAT
CTTTGCTTTCTGTATTGATTCTCAATATTTGATACTATTATAGATTTAGC
ACAACTATTTTGGTTTGATTGAAGGTGTTTTTAACAATAAAAGCTACAAA
ATTGACGTCAGGTAAAGTTTGTCTTTGTTTTATTTTTTTCTTCTCCCAAT
TCTTTACTATTTGTAGATGAAACTCAGTGAACTAATAGCAGAAGTATATC
CACCATCGATAACGAGGTTATGTGCTGTTATAAATCCAGTGTCATCTGAG
GCAAGGAACACTGCAGCTTGGGCCACATCTTCAACAGTTGCAGCTTTCCC
ACGTAATAGACTCCCTTGATCACCGACCAGTTTCTTCACCTCTTCAGGTG
TTGTTTCTTTCCCCCGGAACATTCTATAACCACTAATGAGCATATCTGTA
GGTACACCATGAGGAGAAATGCAGTTCACACGAATCCCGTGCACACCTAA
CTCGCATGCTGCGGTTCTCATCAGTCCGACGATACCGGCTTTCGACAGAG
TAAGGGTGAGACGCTAGCCCTCCCATGATGCCTGCAGAACTCGATGTACA
TATGATGGAACCTTTTGTATTGCATCTCAGCATGGCTCATGCGGCATGCT
TGATCGCATGTACATTGCCAAGCAGATTGATTGAGACCAGATGTTTGACT
TGTTCCATGTCAAGGCTGGTTATGCTGCTTGCAGTGCCTCCAATGCCAGC
ATTGCTAAATAGTATGTCTAGTTTGCCTTTCCATGTGATGGCAAGTTGGA
TAGCTGATTCGACATCACTTTCCTTGGCTACATCACAATGAATGTAGCGA
GCTCCGATGGAGTTAGCAAGCATGGTCCCAGCTTCATCCAATATGTCAGC
AATGACAACATAGGCCCCATTTTCAGCAAATAATTTAGCTGTGGCAGCTC
CAATCCCTCTTGCACCACCAGTTACAACTGCGACTTTGCCAATCATCCTA
CAAAAAAAAAAAAAAAGAGGTATTCATTTCGAATTTAAGTATATAAGATT
CATCGAACATGATGCAGTGAAAAGATCATTAGTAAGAGAGGCTATTGAAG
TAGCCATTGGTACCAACCTCTTTGCAGATGAATTCTGCAAATCAACATGC
TTATCAACACCTTGCTCCATTGCATACACCAAAAAATCAAACATGGTGTA
TATATAGGAATGACTCAAAGAGGCTTTTCGAAGGTTTTTTCCTGTTTTTT
TCCCCTTTCTTTTTATATATAAAAGAGTTGGGCACTCTTTACATTCTCAA
CAACTACATCCAAACTAGATGCTTGGTAATGTTCTGTTGATAGATTCTTC
TTTAAAATCATGTGTAAATATGTATTTTATTTTGTGGTTGTTTTCTACTT
TTTAACAACCATATATCTTCTCATTTCTTCATCATGTAAAAATTTCCTAA
CGCACAACACACACTCAAAACACATGAAAAAACTTATTAGAATTATATTT
TAGGTCTAATTCTTCTCCTACTTCTTGTACTGTTTGCACATTTGAATTTT
AACCCTCTACTTTTAATCCCAGGAATTTAGTTTCTCTACTCTTTTGATTT
AAGAATTGAAGTTCCATTGTTGATCGA

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR002347	SDR_fam
IPR016040	NAD(P)-bd_dom

Search form

g.barbadense_cottongen_reftransV1_0097313, g.barbadense_cottongen_reftransV1_0097313 (contig) Gossypium barbadense

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