g.barbadense_cottongen_reftransV1_0097313, g.barbadense_cottongen_reftransV1_0097313 (contig) Gossypium barbadense

Overview


Name	g.barbadense_cottongen_reftransV1_0097313
Unique Name	g.barbadense_cottongen_reftransV1_0097313
Type	contig
Organism	Gossypium barbadense (Sea Island cotton)
Sequence length	1977

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium barbadense CottonGen RefTrans V1	2016-11-01
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot	2016-11-01
InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1	2016-11-02
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL	2016-11-02

Homology

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BLAST of g.barbadense_cottongen_reftransV1_0097313 vs. ExPASy Swiss-Prot
Match: ATA1_ARATH (Short-chain dehydrogenase reductase ATA1 OS=Arabidopsis thaliana GN=TA1 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.219e-67
Identity = 72/115 (62.61%), Postives = 89/115 (77.39%), Query Frame = -3

Query:  563 TLSKAGIVGLMRTAACELGVHGIRVNCISPHGVPTDMLISGYRMFRGKET-TPEEVKKLVGDQGSLLRGKAATVEDVAQAAVFLASDD-TGFITAHNLVIDGGYTSAISSLSFIY 901
            TLSK  I G++RT ACELG HGIRVN ISPHGVPTD+L++ YR F   +     EV  ++ ++GSLL G+A TVEDVAQAA+FLAS + +GFIT HNLV+DGGYTSA S++ FIY
Sbjct:  157 TLSKGAINGVVRTTACELGSHGIRVNSISPHGVPTDILVNAYRKFLNHDKLNVAEVTDIIAEKGSLLTGRAGTVEDVAQAALFLASQESSGFITGHNLVVDGGYTSATSTMRFIY 271

HSP 2 Score: 134.42 bits (337), Expect = 1.219e-67
Identity = 71/131 (54.20%), Postives = 101/131 (77.10%), Query Frame = -2

Query:  894 KLFAENGAYVVIADILDEAGTMLANSIGARYIHCDVAKESDVESAIQLAITWKGKLDILFSNAGIGGTASSITSLDMEQVKHLVSINLLGNVHAIKHAA*AMLRCNTKGSIICTSSSAGIMGGLASHPYSV 1286
            +LF ENGAYV++ADIL+  G ++A SIG  Y+HCDV+KE+DVE+A++LA+  KG+LD++F+NAG+     SI  +D++ V  LVS+N+ G +H IKHAA AM++    GSIICTSSS+G+MGGL  H Y++
Sbjct:   28 RLFTENGAYVIVADILENEGILVAESIGGCYVHCDVSKEADVEAAVELAMRRKGRLDVMFNNAGMSLNEGSIMGMDVDMVNKLVSVNVNGVLHGIKHAAKAMIKGGRGGSIICTSSSSGLMGGLGGHAYTL 158

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BLAST of g.barbadense_cottongen_reftransV1_0097313 vs. ExPASy Swiss-Prot
Match: SDR2A_ARATH (Short-chain dehydrogenase reductase 2a OS=Arabidopsis thaliana GN=SDR2a PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.838e-43
Identity = 57/139 (41.01%), Postives = 86/139 (61.87%), Query Frame = -2

Query:  897 LFAENGAYVVIADILDEAGTMLANSIGAR-------YIHCDVAKESDVESAIQLAITWKGKLDILFSNAGIGGTAS---SITSLDMEQVKHLVSINLLGNVHAIKHAA*AMLRCNTKGSIICTSSSAGIMGGLASHPYS 1283
            LFA +GA VVIAD+ + AG+ LA S+ +        +I CDV+ E+DVE+ + + +   G+LDILF+NAG+ G      SI   D ++  H++ +N+ G    +KH A AM++   KG II T+S AG+MGG+  H Y+
Sbjct:   53 LFARHGATVVIADVDNVAGSSLAKSLSSHKTSPMVAFISCDVSVEADVENLVNVTVARYGRLDILFNNAGVLGDQKKHKSILDFDADEFDHVMRVNVRGVGLGMKHGARAMIKRGFKGCIISTASVAGVMGGMGPHAYT 191

HSP 2 Score: 95.9005 bits (237), Expect = 3.838e-43
Identity = 51/107 (47.66%), Postives = 74/107 (69.16%), Query Frame = -3

Query:  587 TLSKAGIVGLMRTAACELGVHGIRVNCISPHGVPTDMLISGYRMFRGKETTPEEVKKLVGDQGSL--LRGKAATVEDVAQAAVFLASDDTGFITAHNLVIDGGYTSA 901
            T SK  IVGL + AACELG +GIRVNCISP GV T ML++ +R   G +   ++V+++     SL  L+G+     D+A+AA++LASD++ ++  HNLV+DGG T+A
Sbjct:  191 TASKHAIVGLTKNAACELGKYGIRVNCISPFGVATSMLVNAWRKTSGGDVEDDDVEEMEEFVRSLANLKGETLRANDIAEAALYLASDESKYVNGHNLVVDGGVTTA 297

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BLAST of g.barbadense_cottongen_reftransV1_0097313 vs. ExPASy Swiss-Prot
Match: SDR3B_ARATH (Short-chain dehydrogenase reductase 3b OS=Arabidopsis thaliana GN=SDR3b PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 7.411e-41
Identity = 61/133 (45.86%), Postives = 85/133 (63.91%), Query Frame = -2

Query:  897 KLFAENGAYVVIADILDEAGTMLANSIG---ARYIHCDVAKESDVESAIQLAITWKGKLDILFSNAGIGGTASSITSLDMEQVKHLVSINLLGNVHAIKHAA*AMLRCNTKGSIICTSSSAGIMGGLASHPYS 1286
            +LF E+GA VVI D+ DE G  +A SIG   A Y HCDV  E++VE+A++  +   GKLD+LFSNAG+     SI  L++ ++   ++INL G    IKHAA AM+    +GSI+CT+S A  + G A H Y+
Sbjct:   26 RLFTEHGARVVIVDVQDELGQNVAVSIGEDKASYYHCDVTNETEVENAVKFTVEKYGKLDVLFSNAGVIEPFVSILDLNLNELDRTIAINLRGTAAFIKHAARAMVEKGIRGSIVCTTSVAAEIAGTAPHGYT 158

HSP 2 Score: 75.485 bits (184), Expect = 7.411e-41
Identity = 39/103 (37.86%), Postives = 66/103 (64.08%), Query Frame = -3

Query:  593 TLSKAGIVGLMRTAACELGVHGIRVNCISPHGVPTDMLISGYRMFRGKETTPEEVKKLVGDQGSLLRGKAATVEDVAQAAVFLASDDTGFITAHNLVIDGGYT 901
            T SK G++GL+++A+  LG +GIRVN ++P GV T ++ +G++M       P  V++      + L+G       VA+AA+FLASD++ +++  NL +DGGY+
Sbjct:  158 TTSKHGLLGLIKSASGGLGKYGIRVNGVAPFGVATPLVCNGFKM------EPNVVEQNTSASAN-LKGIVLKARHVAEAALFLASDESAYVSGQNLAVDGGYS 253

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BLAST of g.barbadense_cottongen_reftransV1_0097313 vs. ExPASy Swiss-Prot
Match: SDR4_ARATH (Short-chain dehydrogenase reductase 4 OS=Arabidopsis thaliana GN=SDR4 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 7.517e-39
Identity = 58/133 (43.61%), Postives = 84/133 (63.16%), Query Frame = -2

Query:  897 KLFAENGAYVVIADILDEAGTMLANSIG---ARYIHCDVAKESDVESAIQLAITWKGKLDILFSNAGIGGTASSITSLDMEQVKHLVSINLLGNVHAIKHAA*AMLRCNTKGSIICTSSSAGIMGGLASHPYS 1286
            +LF ++GA VVI DI +E G  LA SIG   A +  C+V  E+DVE+A++  +   GKLD+LFSNAG+     S+  LD+E     +++N+ G    IKHAA +M+   T+GSI+CT+S A  +GG   H Y+
Sbjct:   64 RLFTDHGAKVVIVDIQEELGQNLAVSIGLDKASFYRCNVTDETDVENAVKFTVEKHGKLDVLFSNAGVLEAFGSVLDLDLEAFDRTMAVNVRGAAAFIKHAARSMVASGTRGSIVCTTSIAAEIGGPGPHSYT 196

HSP 2 Score: 74.3294 bits (181), Expect = 7.517e-39
Identity = 43/108 (39.81%), Postives = 65/108 (60.19%), Query Frame = -3

Query:  593 TLTLSKAGIVGLMRTAACELGVHGIRVNCISPHGVPTDMLISGYRMFRGKETTPEEVKKLVGDQGSLL---RGKAATVEDVAQAAVFLASDDTGFITAHNLVIDGGYT 907
            + T SK  ++GL+R+A   LG +GIRVN ++P+GV T M  S Y          EE  K++ + G  L   +G       +A+AA+FLASDD+ +I+  NLV+DGG++
Sbjct:  194 SYTASKHALLGLIRSACAGLGQYGIRVNGVAPYGVATGM-TSAYN---------EEAVKMLEEYGEALGNLKGVVLKARHIAEAALFLASDDSVYISGQNLVVDGGFS 291

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BLAST of g.barbadense_cottongen_reftransV1_0097313 vs. ExPASy Swiss-Prot
Match: SDR3C_ARATH (Short-chain dehydrogenase reductase 3c OS=Arabidopsis thaliana GN=SDR3c PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.056e-37
Identity = 54/133 (40.60%), Postives = 82/133 (61.65%), Query Frame = -2

Query:  897 KLFAENGAYVVIADILDEAGTMLANSIG---ARYIHCDVAKESDVESAIQLAITWKGKLDILFSNAGIGGTASSITSLDMEQVKHLVSINLLGNVHAIKHAA*AMLRCNTKGSIICTSSSAGIMGGLASHPYS 1286
            +LF ++GA VVI D+ +E G  +A  IG   A +  CDV  E++VE A++  +   GKLD+LFSNAG+     S    D+E+   ++++N+ G    IKHAA AM+   T+GSI+CT+S +  +GG   H Y+
Sbjct:   26 RLFTDHGAKVVIVDVQEELGQNVAVLIGKDKASFYRCDVTNETEVEDAVKFTVEKHGKLDVLFSNAGVLEPLESFLDFDLERFDRIMAVNVRGAAAFIKHAARAMVEKGTRGSIVCTTSVSAEIGG-GHHGYT 157

HSP 2 Score: 77.411 bits (189), Expect = 2.056e-37
Identity = 43/103 (41.75%), Postives = 63/103 (61.17%), Query Frame = -3

Query:  593 TLSKAGIVGLMRTAACELGVHGIRVNCISPHGVPTDMLISGYRMFRGKETTPEEVKKLVGDQGSLLRGKAATVEDVAQAAVFLASDDTGFITAHNLVIDGGYT 901
            T SK G+VGL+R+A  +LG +GIRVN ++P+ V T M           E T ++++     +G +L+G       VAQ A+FLASDD+ +I+  NL +DGGYT
Sbjct:  157 TASKHGLVGLIRSACGDLGKYGIRVNGVAPYAVATPMT-------SHDEVTGKQLEDYFDAKG-ILKGMVLKASHVAQVALFLASDDSAYISGQNLAVDGGYT 251

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BLAST of g.barbadense_cottongen_reftransV1_0097313 vs. ExPASy Swiss-Prot
Match: SDR5_ARATH (Short-chain dehydrogenase reductase 5 OS=Arabidopsis thaliana GN=SDR5 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 4.506e-37
Identity = 55/133 (41.35%), Postives = 83/133 (62.41%), Query Frame = -2

Query:  897 KLFAENGAYVVIADILDEAGTMLANSIG---ARYIHCDVAKESDVESAIQLAITWKGKLDILFSNAGIGGTASSITSLDMEQVKHLVSINLLGNVHAIKHAA*AMLRCNTKGSIICTSSSAGIMGGLASHPYS 1286
            +LF ++GA VVI D+ +E G  +A SIG   A +  CD+  E++VE+A++  +   GKLD+LFSNAG+     SI  LD+E     +++N+ G    IKHAA +M+   T+GSI+CT+S    +GG   H Y+
Sbjct:   26 RLFTDHGAKVVIVDLQEELGQNVAVSIGLDKASFYRCDITDETEVENAVKFTVEKHGKLDVLFSNAGVMEPHGSILDLDLEAFDRTMAVNVRGAAAFIKHAARSMVASGTRGSIVCTTSVTAEIGGPGPHSYT 158

HSP 2 Score: 71.2478 bits (173), Expect = 4.506e-37
Identity = 44/108 (40.74%), Postives = 63/108 (58.33%), Query Frame = -3

Query:  593 TLTLSKAGIVGLMRTAACELGVHGIRVNCISPHGVPTDMLISGYRMFRGKETTPEEVKKLVGDQGS---LLRGKAATVEDVAQAAVFLASDDTGFITAHNLVIDGGYT 907
            + T SK  ++GL+R+A   LG +GIRVN ++P+GV T           G  +  EE  K+V D  S   +L+G       VA AA+FLASDD+ +I+  NL +DGGY+
Sbjct:  156 SYTASKHALLGLVRSACGGLGKYGIRVNGVAPYGVAT-----------GLTSYNEETVKMVEDYCSATAILKGVVLKARHVADAALFLASDDSVYISGQNLGVDGGYS 252

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BLAST of g.barbadense_cottongen_reftransV1_0097313 vs. ExPASy Swiss-Prot
Match: SDR3A_ARATH (Short-chain dehydrogenase reductase 3a OS=Arabidopsis thaliana GN=SDR3a PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.119e-36
Identity = 56/133 (42.11%), Postives = 82/133 (61.65%), Query Frame = -2

Query:  897 KLFAENGAYVVIADILDEAGTMLANSIG---ARYIHCDVAKESDVESAIQLAITWKGKLDILFSNAGIGGTASSITSLDMEQVKHLVSINLLGNVHAIKHAA*AMLRCNTKGSIICTSSSAGIMGGLASHPYS 1286
            +LF ++GA VVI D  +E G  +A S+G   A +  CDV  E +VE+A++  +   GKLD+LFSNAG+     S   L++EQ    +++N+ G    IKHAA AM+   T+GSI+CT+S A  +GG   H Y+
Sbjct:   26 RLFTDHGAKVVIVDFQEELGQNVAVSVGKDKASFYRCDVTNEKEVENAVKFTVEKYGKLDVLFSNAGVMEQPGSFLDLNLEQFDRTMAVNVRGAAAFIKHAARAMVEKGTRGSIVCTTSVASEIGGPGPHAYT 158

HSP 2 Score: 67.3958 bits (163), Expect = 1.119e-36
Identity = 37/106 (34.91%), Postives = 62/106 (58.49%), Query Frame = -3

Query:  593 TLSKAGIVGLMRTAACELGVHGIRVNCISPHGVPTDMLISGYRMFRGKETTPEEVKKLVGDQGS---LLRGKAATVEDVAQAAVFLASDDTGFITAHNLVIDGGYT 901
            T SK  ++GL+++A   LG +GIRVN ++P+ V T +            +  EE  ++V +  +   +L+G       VA+AA+FLASDD+ +++  NL +DGGY+
Sbjct:  158 TASKHALLGLVKSACGGLGKYGIRVNGVAPYAVATAI-----------NSRDEETVRMVEEYSAATGILKGVVLKARHVAEAALFLASDDSAYVSGQNLAVDGGYS 252

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BLAST of g.barbadense_cottongen_reftransV1_0097313 vs. ExPASy Swiss-Prot
Match: TS2_MAIZE (Sex determination protein tasselseed-2 OS=Zea mays GN=TS2 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 5.050e-36
Identity = 52/123 (42.28%), Postives = 71/123 (57.72%), Query Frame = -3

Query:  587 TLSKAGIVGLMRTAACELGVHGIRVNCISPHGVPTDMLISGYRMFRGKE--------------TTP--EEVKKL--VGDQGSLLRGKAATVEDVAQAAVFLASDDTGFITAHNLVIDGGYTSA 901
            T SK  IVGL + AACEL  HG+RVNC+SP GV T MLI+ +R                    T P  +EV+K+  V    + L+G      D+A+A +FLASD+  +I+ HNLV+DGG T++
Sbjct:  208 TASKHAIVGLTKNAACELRAHGVRVNCVSPFGVATPMLINAWRQGHDDATADADRDLDLDLDVTVPSDQEVEKMEEVVRGLATLKGPTLRPRDIAEAVLFLASDEARYISGHNLVVDGGVTTS 330

HSP 2 Score: 85.8853 bits (211), Expect = 5.050e-36
Identity = 54/137 (39.42%), Postives = 82/137 (59.85%), Query Frame = -2

Query:  897 KLFAENGAYVVIADILDEAGTMLANSIGAR--YIHCDVAKESDVESAIQLAITWK-GKLDILFSNAGIGG----TASSITSLDMEQVKHLVSINLLGNVHAIKHAA*AMLRCNTKGSIICTSSSAGIMGGLASHPYS 1286
            +LFA++GA VVIADI D AG  LA+++G +  ++ CDV+ E DV  A+  A++   G+LD+  +NAG+ G     A SI S D  +   ++ +N LG    +KHAA   +     GSI+  +S A ++GGL  H Y+
Sbjct:   73 RLFAKHGARVVIADIDDAAGEALASALGPQVSFVRCDVSVEDDVRRAVDWALSRHGGRLDVYCNNAGVLGRQTRAARSILSFDAAEFDRVLRVNALGAALGMKHAA-RAMAPRRAGSIVSVASVAAVLGGLGPHAYT 208

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BLAST of g.barbadense_cottongen_reftransV1_0097313 vs. ExPASy Swiss-Prot
Match: SILD_FORIN (Secoisolariciresinol dehydrogenase (Fragment) OS=Forsythia intermedia PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 7.657e-36
Identity = 54/133 (40.60%), Postives = 79/133 (59.40%), Query Frame = -2

Query:  900 KLFAENGAYVVIADILDEAGTMLANSIG---ARYIHCDVAKESDVESAIQLAITWKGKLDILFSNAGIG-GTASSITSLDMEQVKHLVSINLLGNVHAIKHAA*AMLRCNTKGSIICTSSSAGIMGGLASHPY 1286
            KLF+++GA V IAD+ DE G  +  +IG   + YIHCDV  E  V++A+   ++  GKLDI+FSNAGI       I   +    + + S+N+ G    +KHAA  M+   + G+II T+S +  MGG +SH Y
Sbjct:   35 KLFSQHGAKVAIADVQDELGHSVVEAIGTSNSTYIHCDVTNEDGVKNAVDNTVSTYGKLDIMFSNAGISDPNRPRIIDNEKADFERVFSVNVTGVFLCMKHAARVMIPARS-GNIISTASLSSTMGGGSSHAY 166

HSP 2 Score: 84.7297 bits (208), Expect = 7.657e-36
Identity = 45/101 (44.55%), Postives = 65/101 (64.36%), Query Frame = -3

Query:  593 SKAGIVGLMRTAACELGVHGIRVNCISPHGVPTDMLISGYRMFRGKETTPEEVKKLVGDQGSLLRGKAATVEDVAQAAVFLASDDTGFITAHNLVIDGGYT 895
            SK  ++GL R  A ELG  GIRVNC+SP G+PT +     + F G +   EE + ++   G+L +G    VEDVA AA++LASD+  +++ HNL IDGG++
Sbjct:  169 SKHAVLGLTRNLAVELGQFGIRVNCLSPFGLPTAL----GKKFSGIKN-EEEFENVINFAGNL-KGPKFNVEDVANAALYLASDEAKYVSGHNLFIDGGFS 263

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BLAST of g.barbadense_cottongen_reftransV1_0097313 vs. ExPASy Swiss-Prot
Match: TPRL2_ERYCB (Tropinone reductase-like 2 OS=Erythroxylum coca PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 4.799e-34
Identity = 56/135 (41.48%), Postives = 79/135 (58.52%), Query Frame = -2

Query:  897 KLFAENGAYVVIADILDEAGTMLANSIGAR--YIHCDVAKESDVESAIQLAITWKGKLDILFSNAGI---GGTASSITSLDMEQVKHLVSINLLGNVHAIKHAA*AMLRCNTKGSIICTSSSAGIMGGLASHPYS 1286
            +LF ENGA VVIADI D+ G  LA  +G +  YIHCDV+KE +V + +   +   G+LDI+F+NAGI    G   S+   +   +  L+S+NL G     KHA   M++   KG I+ TSS    + GL+ H Y+
Sbjct:   31 ELFHENGAKVVIADIQDDLGQALATKLGGKACYIHCDVSKEDEVINLVDTTVAKYGRLDIMFNNAGIIEGQGLPVSVVESEKSDLDRLLSVNLGGAFLGAKHATRVMVQ-QRKGCILFTSSVCTSIAGLSGHAYA 164

HSP 2 Score: 75.0998 bits (183), Expect = 4.799e-34
Identity = 41/102 (40.20%), Postives = 66/102 (64.71%), Query Frame = -3

Query:  593 SKAGIVGLMRTAACELGVHGIRVNCISPHGVPTDMLISGYRMFRGK-ETTPEEVKKLVGDQGSLLRGKAATVEDVAQAAVFLASDDTGFITAHNLVIDGGYT 895
            SK+G+ GL +    ELG +GIRVNCISP+G     L++G     G+ E   E V+ ++ + G+ L G+    + +A+AA+FLASD+  +++  N+V+DGGY+
Sbjct:  166 SKSGVCGLAKNLTPELGKYGIRVNCISPYG-----LVTGVSNVSGEGEANREFVEAMLSELGT-LSGQTLRADGIAKAALFLASDEAYYVSGINMVVDGGYS 261

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BLAST of g.barbadense_cottongen_reftransV1_0097313 vs. ExPASy TrEMBL
Match: I1N4V0_SOYBN (Uncharacterized protein OS=Glycine max PE=3 SV=2)

HSP 1 Score: 181.415 bits (459), Expect = 4.483e-83
Identity = 91/133 (68.42%), Postives = 109/133 (81.95%), Query Frame = -2

Query:  894 KLFAENGAYVVIADILDEAGTMLANSIGARYIHCDVAKESDVESAIQLAITWKGKLDILFSNAGIGGT-ASSITSLDMEQVKHLVSINLLGNVHAIKHAA*AMLRCNTK-GSIICTSSSAGIMGGLASHPYSV 1286
            KLFAENGA+VVIAD+LDE GT +A SIG  YIHCDV+KE DVESAI LA++WKG LDI+ SNAGIGG    SIT+L+M++V+HL SINL G +H IKHAA AM++ N K GSIICTSS+A IMGGLA H Y++
Sbjct:   41 KLFAENGAHVVIADVLDELGTTVAKSIGGHYIHCDVSKEDDVESAINLALSWKGHLDIMLSNAGIGGPEGRSITTLEMDRVRHLFSINLYGTIHGIKHAARAMIKGNNKGGSIICTSSAASIMGGLALHGYTM 173

HSP 2 Score: 156.762 bits (395), Expect = 4.483e-83
Identity = 72/113 (63.72%), Postives = 95/113 (84.07%), Query Frame = -3

Query:  563 TLSKAGIVGLMRTAACELGVHGIRVNCISPHGVPTDMLISGYRMFRGKETTPEEVKKLVGDQGSLLRGKAATVEDVAQAAVFLASDDTGFITAHNLVIDGGYTSAISSLSFIY 901
            T++KA I GL+R+AACELG H IRVNCISPHGVP++ML+S  R F   + TP+ VK+++G + SLL+GK AT+EDVA AA+FLASD++GFITAHNL+IDGG+TSA S +S++Y
Sbjct:  172 TMTKAAIDGLVRSAACELGEHLIRVNCISPHGVPSEMLLSACRRFGHDDITPQGVKEMIGSRASLLKGKGATIEDVAHAALFLASDESGFITAHNLLIDGGHTSADSRMSYMY 284

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BLAST of g.barbadense_cottongen_reftransV1_0097313 vs. ExPASy TrEMBL
Match: U3PT51_POPTO (ATA OS=Populus tomentosa PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 7.447e-83
Identity = 87/131 (66.41%), Postives = 103/131 (78.63%), Query Frame = -2

Query:  894 KLFAENGAYVVIADILDEAGTMLANSIGARYIHCDVAKESDVESAIQLAITWKGKLDILFSNAGIGGTASSITSLDMEQVKHLVSINLLGNVHAIKHAA*AMLRCNTKGSIICTSSSAGIMGGLASHPYSV 1286
            K+FAENGA V IADIL + GT LA+SIG RYIHCDV  ++DVESAI LA+ WKGKLDI+F+NAGI GT  SIT+LDMEQV +L+S+N+ G +H IKHAA  M+     G IIC SSSA IMGGL SHPYS+
Sbjct:   20 KVFAENGASVNIADILADLGTSLADSIGGRYIHCDVVNQADVESAINLALAWKGKLDIMFNNAGISGTEGSITNLDMEQVNYLLSVNVNGILHGIKHAARVMITGQKGGCIICMSSSAAIMGGLGSHPYSL 150

HSP 2 Score: 160.999 bits (406), Expect = 7.447e-83
Identity = 74/114 (64.91%), Postives = 96/114 (84.21%), Query Frame = -3

Query:  563 TLSKAGIVGLMRTAACELGVHGIRVNCISPHGVPTDMLISGYRMFRGK-ETTPEEVKKLVGDQGSLLRGKAATVEDVAQAAVFLASDDTGFITAHNLVIDGGYTSAISSLSFIY 901
            +L+K  I+GLMR+ ACELGVHGIRVNCISPHGV ++ML+  YR   GK + TP EV K+VG++GSLL+G++ ++EDVAQA +FLAS++ G+ITAHNLVIDGG+TSA S +SFIY
Sbjct:  149 SLAKEAIIGLMRSTACELGVHGIRVNCISPHGVASEMLVGAYRKVLGKKDMTPVEVSKIVGERGSLLKGRSPSLEDVAQAVLFLASEEAGYITAHNLVIDGGFTSASSKMSFIY 262

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BLAST of g.barbadense_cottongen_reftransV1_0097313 vs. ExPASy TrEMBL
Match: V7B3A1_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_008G022500g PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 4.848e-81
Identity = 90/132 (68.18%), Postives = 106/132 (80.30%), Query Frame = -2

Query:  894 KLFAENGAYVVIADILDEAGTMLANSIGARYIHCDVAKESDVESAIQLAITWKGKLDILFSNAGIGGT-ASSITSLDMEQVKHLVSINLLGNVHAIKHAA*AMLRCNTKGSIICTSSSAGIMGGLASHPYSV 1286
            KLFAENGA+VVIAD+LD+ G  +A SIG RYIHCDV+KE DVESAI LA++WKG LDI+ SNAGIGG    SIT++DMEQV+HL SINL G VH IKHAA AM++    GSIICTSS A +MGGLA H Y++
Sbjct:   39 KLFAENGAHVVIADVLDDLGANVAESIGGRYIHCDVSKEDDVESAINLAVSWKGHLDIMLSNAGIGGPEGRSITTIDMEQVRHLFSINLHGTVHGIKHAARAMIKGQRGGSIICTSSVAAVMGGLALHGYTM 170

HSP 2 Score: 149.443 bits (376), Expect = 4.848e-81
Identity = 67/113 (59.29%), Postives = 91/113 (80.53%), Query Frame = -3

Query:  563 TLSKAGIVGLMRTAACELGVHGIRVNCISPHGVPTDMLISGYRMFRGKETTPEEVKKLVGDQGSLLRGKAATVEDVAQAAVFLASDDTGFITAHNLVIDGGYTSAISSLSFIY 901
            T++KA I GL+R+AACELG H IRVNCISPHG+P+ MLI+ ++ F   + TPE + + +G + SLL+G+ AT+EDVA AA+FLASD++GFITAHNL +DGGYTSA S + ++Y
Sbjct:  169 TMTKAAIDGLVRSAACELGEHLIRVNCISPHGIPSQMLITAFKRFANVDITPECLNEYIGTRASLLKGRGATIEDVAHAALFLASDESGFITAHNLRVDGGYTSADSRMCYMY 281

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097313 vs. ExPASy TrEMBL
Match: G7JTV8_MEDTR (Enoyl-(Acyl carrier) reductase OS=Medicago truncatula GN=MTR_4g078630 PE=3 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 2.511e-80
Identity = 103/153 (67.32%), Postives = 128/153 (83.66%), Query Frame = -2

Query:  894 RMIGKXXXXXXXXXXXXXXXAKLFAENGAYVVIADILDEAGTMLANSIGARYIHCDVAKESDVESAIQLAITWKGKLDILFSNAGIGG-TASSITSLDMEQVKHLVSINLLGNVHAIKHAA*AMLRCNTKGSIICTSSSAGIMGGLASHPYSV 1349
            R++GKVAV+TGGARGIGAATAKLFAENGA+V+IAD+LDE GT +A SI   YIHCDV+KESD+ESAI L+I+WKG+LDI+F+NAGI G    SIT+LDME++ HL+SINL G +H IKHAA AM++    GSIICTSS+A  +GG ASH Y++
Sbjct:   18 RLLGKVAVITGGARGIGAATAKLFAENGAHVIIADVLDEEGTKVAESIDGLYIHCDVSKESDIESAINLSISWKGQLDIMFNNAGIAGYEGRSITTLDMEKLTHLLSINLFGTIHGIKHAAKAMIKGKKGGSIICTSSAAATIGGFASHGYTM 170

HSP 2 Score: 149.828 bits (377), Expect = 2.511e-80
Identity = 67/113 (59.29%), Postives = 92/113 (81.42%), Query Frame = -3

Query:  563 TLSKAGIVGLMRTAACELGVHGIRVNCISPHGVPTDMLISGYRMFRGKETTPEEVKKLVGDQGSLLRGKAATVEDVAQAAVFLASDDTGFITAHNLVIDGGYTSAISSLSFIY 901
            T+SK+ + GLMR+AACELGVH IRVNC+SPHGVP++ML++ +R +   + T E++ + +G   SLL+G+ AT +DVAQAA+FLASD++GF+TAHNL +DGG TSA S +SFIY
Sbjct:  169 TMSKSAMDGLMRSAACELGVHLIRVNCVSPHGVPSEMLLNAFRCYGEVDMTSEQLSEFIGMNASLLKGRGATTDDVAQAALFLASDESGFVTAHNLSVDGGITSANSVMSFIY 281

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097313 vs. ExPASy TrEMBL
Match: A0A0B2Q1Z9_GLYSO (Sex determination protein tasselseed-2 OS=Glycine soja GN=glysoja_016076 PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.033e-77
Identity = 85/133 (63.91%), Postives = 101/133 (75.94%), Query Frame = -2

Query:  894 KLFAENGAYVVIADILDEAGTMLANSIGARYIHCDVAKESDVESAIQLAITWKGKLDILFSNAGIGGT-ASSITSLDMEQVKHLVSINLLGNVHAIKHAA*AMLRCNTK-GSIICTSSSAGIMGGLASHPYSV 1286
            KLFAENGA+VVIAD           SIG  YIHCDV+KE DVESAI LA++WKG LDI+ SNAGIGG    SIT+L+M++V+HL SINL G +H IKHAA AM++ N K GSIICTSS+A IMGGLA H Y++
Sbjct:   41 KLFAENGAHVVIAD-----------SIGGHYIHCDVSKEDDVESAINLALSWKGHLDIMLSNAGIGGPEGRSITTLEMDRVRHLFSINLYGTIHGIKHAARAMIKGNNKGGSIICTSSAASIMGGLALHGYTM 162

HSP 2 Score: 156.762 bits (395), Expect = 7.033e-77
Identity = 72/113 (63.72%), Postives = 95/113 (84.07%), Query Frame = -3

Query:  563 TLSKAGIVGLMRTAACELGVHGIRVNCISPHGVPTDMLISGYRMFRGKETTPEEVKKLVGDQGSLLRGKAATVEDVAQAAVFLASDDTGFITAHNLVIDGGYTSAISSLSFIY 901
            T++KA I GL+R+AACELG H IRVNCISPHGVP++ML+S  R F   + TP+ VK+++G + SLL+GK AT+EDVA AA+FLASD++GFITAHNL+IDGG+TSA S +S++Y
Sbjct:  161 TMTKAAIDGLVRSAACELGEHLIRVNCISPHGVPSEMLLSACRRFGHDDITPQGVKEMIGSRASLLKGKGATIEDVAHAALFLASDESGFITAHNLLIDGGHTSADSRMSYMY 273

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097313 vs. ExPASy TrEMBL
Match: A0A068V3Y0_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_96 OS=Coffea canephora GN=GSCOC_T00042784001 PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 2.589e-76
Identity = 88/130 (67.69%), Postives = 108/130 (83.08%), Query Frame = -2

Query:  897 KLFAENGAYVVIADILDEAGTMLANSIGARYIHCDVAKESDVESAIQLAITWKGKLDILFSNAGIGGTASSITSLDMEQVKHLVSINLLGNVHAIKHAA*AMLRCNTKGSIICTSSSAGIMGGLASHPYS 1286
            KLFA+NGAYVVIADILDE G+ LA+SIG RYIHCDV+KE DVESA++ A+ WKGKLDI+F+NAG+GG   SI+SL+ME V+ L+SINL G +H IKHA+ AM+     GSIIC+SSSA IMGGLA+H Y+
Sbjct:   35 KLFAKNGAYVVIADILDELGSKLADSIGGRYIHCDVSKEEDVESAVEFALAWKGKLDIMFNNAGVGGPGGSISSLNMEDVRALLSINLFGIIHGIKHASRAMIAGKNGGSIICSSSSAAIMGGLAAHAYT 164

HSP 2 Score: 149.443 bits (376), Expect = 2.589e-76
Identity = 72/114 (63.16%), Postives = 92/114 (80.70%), Query Frame = -3

Query:  563 TLSKAGIVGLMRTAACELGVHGIRVNCISPHGVPTDMLISGYRMFRGKET-TPEEVKKLVGDQGSLLRGKAATVEDVAQAAVFLASDDTGFITAHNLVIDGGYTSAISSLSFIY 901
            T SK  I+GL +T ACELG +GIRVNCISPHGV ++ML+S YR   G++    E+V K+VG++GSLLRG+  ++EDVA+A +FLASD++GFITAHNLVIDGGYTSA S +S IY
Sbjct:  164 TASKTAILGLAKTTACELGAYGIRVNCISPHGVASEMLLSAYRTCLGRDDLQAEDVTKIVGERGSLLRGRGGSMEDVAKAVLFLASDESGFITAHNLVIDGGYTSACSHMSPIY 277

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097313 vs. ExPASy TrEMBL
Match: M0ZJW8_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400000882 PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 6.348e-76
Identity = 75/116 (64.66%), Postives = 94/116 (81.03%), Query Frame = -3

Query:  563 TLTLSKAGIVGLMRTAACELGVHGIRVNCISPHGVPTDMLISGYRMFRGK-ETTPEEVKKLVGDQGSLLRGKAATVEDVAQAAVFLASDDTGFITAHNLVIDGGYTSAISSLSFIY 907
            + T+SK  I+GL R+ ACELGVHGIRVNCISPHGVP++ML+S ++ F G  E  P EV  +VG++GSLLRG+   +EDVAQA +FLASD++GF+T HNLVIDGGYTSA S +SFIY
Sbjct:  157 SYTMSKEAILGLARSTACELGVHGIRVNCISPHGVPSEMLVSEFQKFLGNTELRPNEVGSIVGERGSLLRGRGGRLEDVAQAVLFLASDESGFVTGHNLVIDGGYTSAFSQMSFIY 272

HSP 2 Score: 150.984 bits (380), Expect = 6.348e-76
Identity = 74/131 (56.49%), Postives = 99/131 (75.57%), Query Frame = -2

Query:  894 KLFAENGAYVVIADILDEAGTMLANSIGARYIHCDVAKESDVESAIQLAITWKGKLDILFSNAGIGGTASSITSLDMEQVKHLVSINLLGNVHAIKHAA*AMLRCNTKGSIICTSSSAGIMGGLASHPYSV 1286
            ++FAENGA+VVIADIL+E GT LA SIG RY+ CDV+KE +VESA+++A+ WKG+LDI+F+NAGI G   SIT++ M+Q+  L++INL G VH  +            G+IIC+SSSA IMGGLASH Y++
Sbjct:   41 RVFAENGAHVVIADILNEVGTSLAESIGGRYVRCDVSKEEEVESAVKVAVEWKGRLDIMFNNAGIAGFGGSITNIKMDQMMTLLAINLHGVVHGKR-----------GGTIICSSSSAAIMGGLASHSYTM 160

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097313 vs. ExPASy TrEMBL
Match: Q41345_SILLB (STA1-12 OS=Silene latifolia subsp. alba GN=STA1-12 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 2.272e-74
Identity = 93/152 (61.18%), Postives = 122/152 (80.26%), Query Frame = -2

Query:  894 RMIGKXXXXXXXXXXXXXXXAKLFAENGAYVVIADILDEAGTMLANSIGARYIHCDVAKESDVESAIQLAITWKGKLDILFSNAGIGGTASSITSLDMEQVKHLVSINLLGNVHAIKHAA*AMLRCNTKGSIICTSSSAGIMGGLASHPYSV 1349
            R+ GKVA+VTGGARGIGAA AKLFA NGA+VV+AD+LDE G  LANSIG  ++HC+V+KE+D+E+ ++LA+ WKG+LDI+ +NAG  G   SI +++M++V+ +V +NL G VH IKHAA AM+     GSIICTSSSA IMGGLASH Y++
Sbjct:   18 RLKGKVAIVTGGARGIGAAIAKLFASNGAHVVVADVLDELGVGLANSIGGCFVHCNVSKEADLENTVKLAMAWKGRLDIIVNNAGTSGADGSIVNVNMDRVREIVGVNLFGVVHGIKHAARAMIEGKRGGSIICTSSSAAIMGGLASHAYTM 169

HSP 2 Score: 146.362 bits (368), Expect = 2.272e-74
Identity = 68/113 (60.18%), Postives = 87/113 (76.99%), Query Frame = -3

Query:  563 TLSKAGIVGLMRTAACELGVHGIRVNCISPHGVPTDMLISGYRMFRGKETTPEEVKKLVGDQGSLLRGKAATVEDVAQAAVFLASDDTGFITAHNLVIDGGYTSAISSLSFIY 901
            T+SK  I+ +M++AACELG HGIRVNCISPH VPT+MLISGYR F G +   EE+ K+   + SLL GK  +VED+A  A+FLASDD GFIT HNLV+DGGYT+A  +++ +Y
Sbjct:  168 TMSKGAILSVMKSAACELGEHGIRVNCISPHAVPTEMLISGYRRFVG-DIGDEEIAKMCAAKASLLHGKGGSVEDIAAGALFLASDDAGFITGHNLVVDGGYTAANITMAHMY 279

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097313 vs. ExPASy TrEMBL
Match: Q42407_SILLB (STA1-18 OS=Silene latifolia subsp. alba GN=STA1-18 PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.704e-74
Identity = 76/131 (58.02%), Postives = 103/131 (78.63%), Query Frame = -2

Query:  894 KLFAENGAYVVIADILDEAGTMLANSIGARYIHCDVAKESDVESAIQLAITWKGKLDILFSNAGIGGTASSITSLDMEQVKHLVSINLLGNVHAIKHAA*AMLRCNTKGSIICTSSSAGIMGGLASHPYSV 1286
            KLFA NGA+VV+AD+LDE G  LANSIG  ++HC+V+KE+D+E+ ++LA+ WKG+LDI+ +NAG  G   SI +++M++V+ +V +NL G VH IKHAA AM+     GSIICTSSSA IMGGLASH Y++
Sbjct:   39 KLFASNGAHVVVADVLDELGVGLANSIGGCFVHCNVSKEADLENTVKLAMAWKGRLDIIVNNAGTSGADGSIVNVNMDRVREIVGVNLFGVVHGIKHAARAMIEGKRGGSIICTSSSAAIMGGLASHAYTM 169

HSP 2 Score: 146.362 bits (368), Expect = 2.704e-74
Identity = 68/113 (60.18%), Postives = 87/113 (76.99%), Query Frame = -3

Query:  563 TLSKAGIVGLMRTAACELGVHGIRVNCISPHGVPTDMLISGYRMFRGKETTPEEVKKLVGDQGSLLRGKAATVEDVAQAAVFLASDDTGFITAHNLVIDGGYTSAISSLSFIY 901
            T+SK  I+ +M++AACELG HGIRVNCISPH VPT+MLISGYR F G +   EE+ K+   + SLL GK  +VED+A  A+FLASDD GFIT HNLV+DGGYT+A  +++ +Y
Sbjct:  168 TMSKGAILSVMKSAACELGEHGIRVNCISPHAVPTEMLISGYRRFVG-DIGDEEIAKMCAAKASLLHGKGGSVEDIAAGALFLASDDAGFITGHNLVVDGGYTAANITMAHMY 279

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097313 vs. ExPASy TrEMBL
Match: D7LPE0_ARALL (Alcohol dehydrogenase OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_484770 PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 3.922e-71
Identity = 71/131 (54.20%), Postives = 100/131 (76.34%), Query Frame = -2

Query:  894 KLFAENGAYVVIADILDEAGTMLANSIGARYIHCDVAKESDVESAIQLAITWKGKLDILFSNAGIGGTASSITSLDMEQVKHLVSINLLGNVHAIKHAA*AMLRCNTKGSIICTSSSAGIMGGLASHPYSV 1286
            +LF ENGAYV++ADIL+  G  +A SIG  Y+HCDV+KE+DVE+A++LA+  KG+LD++F+NAG+     SI  +D++ V  LVS+N+ G +H IKHAA AM++    GSIICTSSS+G+MGGL  H Y++
Sbjct:   28 RLFTENGAYVIVADILENEGIHVAESIGGCYVHCDVSKEADVEAAVELAMRRKGRLDVMFNNAGMTLNEGSIMEMDVDMVNKLVSVNVNGVLHGIKHAAKAMIKGGGGGSIICTSSSSGVMGGLGGHAYTL 158

HSP 2 Score: 147.517 bits (371), Expect = 3.922e-71
Identity = 73/115 (63.48%), Postives = 89/115 (77.39%), Query Frame = -3

Query:  563 TLSKAGIVGLMRTAACELGVHGIRVNCISPHGVPTDMLISGYRMFRGKETTP-EEVKKLVGDQGSLLRGKAATVEDVAQAAVFLASDD-TGFITAHNLVIDGGYTSAISSLSFIY 901
            TLSK  I GL+RT ACELG HGIRVN ISPHGVPTD+L++ YR +   +     EV  +V ++GSLL G+A TVEDVAQAA+FLAS + +GFIT HNLV+DGGYTSA S++ FIY
Sbjct:  157 TLSKGAINGLVRTTACELGSHGIRVNSISPHGVPTDILVNAYRKYLNNDKLDVAEVTDIVAEKGSLLTGRAGTVEDVAQAALFLASQESSGFITGHNLVVDGGYTSATSTMRFIY 271

The following BLAST results are available for this feature:

BLAST of g.barbadense_cottongen_reftransV1_0097313 vs. ExPASy Swiss-Prot
BLAST of g.barbadense_cottongen_reftransV1_0097313 vs. ExPASy TrEMBL

BLAST of g.barbadense_cottongen_reftransV1_0097313 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 25


Match Name	E-value	Identity	Description
ATA1_ARATH	1.219e-67	62.61	Short-chain dehydrogenase reductase ATA1 OS=Arabid...	[more]
SDR2A_ARATH	3.838e-43	41.01	Short-chain dehydrogenase reductase 2a OS=Arabidop...	[more]
SDR3B_ARATH	7.411e-41	45.86	Short-chain dehydrogenase reductase 3b OS=Arabidop...	[more]
SDR4_ARATH	7.517e-39	43.61	Short-chain dehydrogenase reductase 4 OS=Arabidops...	[more]
SDR3C_ARATH	2.056e-37	40.60	Short-chain dehydrogenase reductase 3c OS=Arabidop...	[more]
SDR5_ARATH	4.506e-37	41.35	Short-chain dehydrogenase reductase 5 OS=Arabidops...	[more]
SDR3A_ARATH	1.119e-36	42.11	Short-chain dehydrogenase reductase 3a OS=Arabidop...	[more]
TS2_MAIZE	5.050e-36	42.28	Sex determination protein tasselseed-2 OS=Zea mays...	[more]
SILD_FORIN	7.657e-36	40.60	Secoisolariciresinol dehydrogenase (Fragment) OS=F...	[more]
TPRL2_ERYCB	4.799e-34	41.48	Tropinone reductase-like 2 OS=Erythroxylum coca PE...	[more]

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BLAST of g.barbadense_cottongen_reftransV1_0097313 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
I1N4V0_SOYBN	4.483e-83	68.42	Uncharacterized protein OS=Glycine max PE=3 SV=2	[more]
U3PT51_POPTO	7.447e-83	66.41	ATA OS=Populus tomentosa PE=3 SV=1	[more]
V7B3A1_PHAVU	4.848e-81	68.18	Uncharacterized protein OS=Phaseolus vulgaris GN=P...	[more]
G7JTV8_MEDTR	2.511e-80	67.32	Enoyl-(Acyl carrier) reductase OS=Medicago truncat...	[more]
A0A0B2Q1Z9_GLYSO	7.033e-77	63.91	Sex determination protein tasselseed-2 OS=Glycine ...	[more]
A0A068V3Y0_COFCA	2.589e-76	67.69	Coffea canephora DH200=94 genomic scaffold, scaffo...	[more]
M0ZJW8_SOLTU	6.348e-76	64.66	Uncharacterized protein OS=Solanum tuberosum GN=PG...	[more]
Q41345_SILLB	2.272e-74	61.18	STA1-12 OS=Silene latifolia subsp. alba GN=STA1-12...	[more]
Q42407_SILLB	2.704e-74	58.02	STA1-18 OS=Silene latifolia subsp. alba GN=STA1-18...	[more]
D7LPE0_ARALL	3.922e-71	54.20	Alcohol dehydrogenase OS=Arabidopsis lyrata subsp....	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002347	Short-chain dehydrogenase/reductase SDR	PRINTS	PR00081	GDHRDH	coord: 5..22 score: 53.3 coord: 74..85 score: 57.57
IPR002347	Short-chain dehydrogenase/reductase SDR	PFAM	PF00106	adh_short	coord: 4..118 e-value: 1.4E-23 score: 83.3
IPR002347	Short-chain dehydrogenase/reductase SDR	PANTHER	PTHR24322	FAMILY NOT NAMED	coord: 8..115
IPR016040	NAD(P)-binding domain	GENE3D	3.40.50.720		coord: 3..118 e-value: 2.4E-31 score: 108.4
IPR016040	NAD(P)-binding domain	SUPERFAMILY	51735	NAD(P)-binding Rossmann-fold domains	coord: 3..118
None	No IPR available	PANTHER	PTHR24322:SF510	ALCOHOL DEHYDROGENASE (ATA1)	coord: 8..115

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.barbadense_cottongen_reftransV1_0097313 ID=g.barbadense_cottongen_reftransV1_0097313; Name=g.barbadense_cottongen_reftransV1_0097313; organism=Gossypium barbadense; type=contig; length=1977bp
CAAAAAGCAAATAGGCCTTTTTTGTTAAAAATTTCATCCATTTCTACTAT
TAAAAATTGGTATGCCTTGTAGAATAACATAACAGCTACACATGGCTGCC
ATGTGCTGATATATAGAGATTAGTTTTTAACTGTAGAAATTAATGAAATT
TTTAACAGAATCATCAATTTACTTTTTAATTTAACGTACGAGGGTTAATT
TGTCTATTTTTTTTAGTGAAGGGAGTGAAATGTAATCTAACTCTTAATAC
AAGAGCATCTATGGTACTTTTACTGTTTTTAGCTGATGCTCACATATTGT
ACATAAATACAACATGGTTTTCAATTATATGCCATCCTTCCATGTTGGAC
TAAGCTGTTTGCATCTTGTTGGATGAAAAGACTTCCTTTAAACTAATAAT
CTTTGCTTTCTGTATTGATTCTCAATATTTGATACTATTATAGATTTAGC
ACAACTATTTTGGTTTGATTGAAGGTGTTTTTAACAATAAAAGCTACAAA
ATTGACGTCAGGTAAAGTTTGTCTTTGTTTTATTTTTTTCTTCTCCCAAT
TCTTTACTATTTGTAGATGAAACTCAGTGAACTAATAGCAGAAGTATATC
CACCATCGATAACGAGGTTATGTGCTGTTATAAATCCAGTGTCATCTGAG
GCAAGGAACACTGCAGCTTGGGCCACATCTTCAACAGTTGCAGCTTTCCC
ACGTAATAGACTCCCTTGATCACCGACCAGTTTCTTCACCTCTTCAGGTG
TTGTTTCTTTCCCCCGGAACATTCTATAACCACTAATGAGCATATCTGTA
GGTACACCATGAGGAGAAATGCAGTTCACACGAATCCCGTGCACACCTAA
CTCGCATGCTGCGGTTCTCATCAGTCCGACGATACCGGCTTTCGACAGAG
TAAGGGTGAGACGCTAGCCCTCCCATGATGCCTGCAGAACTCGATGTACA
TATGATGGAACCTTTTGTATTGCATCTCAGCATGGCTCATGCGGCATGCT
TGATCGCATGTACATTGCCAAGCAGATTGATTGAGACCAGATGTTTGACT
TGTTCCATGTCAAGGCTGGTTATGCTGCTTGCAGTGCCTCCAATGCCAGC
ATTGCTAAATAGTATGTCTAGTTTGCCTTTCCATGTGATGGCAAGTTGGA
TAGCTGATTCGACATCACTTTCCTTGGCTACATCACAATGAATGTAGCGA
GCTCCGATGGAGTTAGCAAGCATGGTCCCAGCTTCATCCAATATGTCAGC
AATGACAACATAGGCCCCATTTTCAGCAAATAATTTAGCTGTGGCAGCTC
CAATCCCTCTTGCACCACCAGTTACAACTGCGACTTTGCCAATCATCCTA
CAAAAAAAAAAAAAAAGAGGTATTCATTTCGAATTTAAGTATATAAGATT
CATCGAACATGATGCAGTGAAAAGATCATTAGTAAGAGAGGCTATTGAAG
TAGCCATTGGTACCAACCTCTTTGCAGATGAATTCTGCAAATCAACATGC
TTATCAACACCTTGCTCCATTGCATACACCAAAAAATCAAACATGGTGTA
TATATAGGAATGACTCAAAGAGGCTTTTCGAAGGTTTTTTCCTGTTTTTT
TCCCCTTTCTTTTTATATATAAAAGAGTTGGGCACTCTTTACATTCTCAA
CAACTACATCCAAACTAGATGCTTGGTAATGTTCTGTTGATAGATTCTTC
TTTAAAATCATGTGTAAATATGTATTTTATTTTGTGGTTGTTTTCTACTT
TTTAACAACCATATATCTTCTCATTTCTTCATCATGTAAAAATTTCCTAA
CGCACAACACACACTCAAAACACATGAAAAAACTTATTAGAATTATATTT
TAGGTCTAATTCTTCTCCTACTTCTTGTACTGTTTGCACATTTGAATTTT
AACCCTCTACTTTTAATCCCAGGAATTTAGTTTCTCTACTCTTTTGATTT
AAGAATTGAAGTTCCATTGTTGATCGA

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR002347	SDR_fam
IPR016040	NAD(P)-bd_dom

Search form

g.barbadense_cottongen_reftransV1_0097313, g.barbadense_cottongen_reftransV1_0097313 (contig) Gossypium barbadense

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